cran: PERMANOVA | Projects | Ecosyste.ms: Papers

10.3390/microorganisms8010030

Influence of Sampling Site and other Environmental Factors on the Bacterial Community Composition of Domestic Washing Machines
Cited by: 20
Author(s): Susanne Jacksch, Dominik Kaiser, Severin Weis, Mirko Weide, Stefan Ratering, Sylvia Schnell, Markus Egert
Software Mentions: 4
Published: almost 5 years ago

10.1371/journal.pone.0209887

Seabird and pinniped shape soil bacterial communities of their settlements in Cape Shirreff, Antarctica
Cited by: 6
Author(s): Lía Ramírez-Fernández, Nicole Trefault, Margarita Carú, Julieta Orlando
Software Mentions: 4
Published: almost 6 years ago

10.3390/microorganisms8101506

Microbiome Management by Biological and Chemical Treatments in Maize Is Linked to Plant Health
Cited by: 16
Author(s): Peter Kusstatscher, Wisnu Adi Wicaksono, Dhivya Priya Thenappan, Eveline Adam, Henry Müller, Gabriele Berg
Software Mentions: 4
Published: about 4 years ago

10.3390/microorganisms9081737

Characterizing the Cattle Gut Microbiome in Farms with a High and Low Prevalence of Shiga Toxin Producing Escherichia coli
Cited by: 8
Author(s): Karla Vasco, Brian Nohomovich, Pallavi Singh, Cristina Venegas-Vargas, Rebekah E. Mosci, S. R. Rust, Paul C. Bartlett, Bo Norby, Daniel L. Grooms, Lixin Zhang, Shannon D. Manning
Software Mentions: 4
Published: over 3 years ago

10.1089/ast.2018.1870

A Low-Diversity Microbiota Inhabits Extreme Terrestrial Basaltic Terrains and Their Fumaroles: Implications for the Exploration of Mars
Cited by: 18
Author(s): Charles S. Cockell, Jesse Patrick Harrison, Adam H. Stevens, Samuel J. Payler, S. S. Hughes, S. E. Kobs Nawotniak, A. L. Brady, R. C. Elphic, C. W. Haberle, A. Sehlke, K. Beaton, Andrew F. J. Abercromby, Petra Schwendner, Jennifer Wadsworth, Hanna Landenmark, Rosie Cane, Andrew W. Dickinson, Natasha Nicholson, Liam Perera, D. S. S. Lim
Software Mentions: 4
Published: over 5 years ago

10.3390/life11010007

The Gut Microbiome and Alcoholic Liver Disease: Ethanol Consumption Drives Consistent and Reproducible Alteration in Gut Microbiota in Mice
Cited by: 8
Author(s): Erick S. LeBrun, Meghali Nighot, Dharmaprakash Viszwapriya, Anand Kumar, Chien-Chi Lo, Patrick Chain, Y. Thomas
Software Mentions: 4
Published: almost 4 years ago

10.3390/microorganisms9040787

Gut Microbiota Dynamics, Growth Performance, and Gut Morphology in Broiler Chickens Fed Diets Varying in Energy Density with or without Bacitracin Methylene Disalicylate (BMD)
Cited by: 13
Author(s): Deborah Adewole, Fisayo Akinyemi
Software Mentions: 4
Published: over 3 years ago

10.1186/s13568-019-0747-z

Dietary supplementation with fermented Mao-tai lees beneficially affects gut microbiota structure and function in pigs
Cited by: 18
Author(s): Huan Li, Huawei Li, Peifeng Xie, Zhihua Li, Yulong Yin, François Blachier, Xiangfeng Kong
Software Mentions: 4
Published: almost 6 years ago

10.3389/fmicb.2021.670336

Comparative Analysis of 16S rRNA Gene and Metagenome Sequencing in Pediatric Gut Microbiomes
Cited by: 47
Author(s): Danielle Peterson, Kevin S. Bonham, Sophie Rowland, Cassandra Wolos Pattanayak, Vanja Klepac‐Ceraj, Sean Deoni, Viren D’Sa, Muriel Bruchhage, Alexandra Volpe, Jennifer Beauchemin, Caroline Wallace, J. H. Rogers, R. Cano, Jéssica Moreira Fernandes, Elizabeth Walsh, Brittany Rhodes, Matthew J. Huentelman, Candace R. Lewis, Matthew De Both, Marcus Naymik, Susan Carnell, E.N.H. Jansen, Jennifer R. Sadler, Gita Thapaliya, Monique K. LeBourgeois, Hans G. Mueller, Jane-Ling Wang, Changbo Zhu, Yaqing Chang, Joseph M. Braun
Software Mentions: 4
Published: over 3 years ago

10.1371/journal.pone.0157442

Dung Beetles along a Tropical Altitudinal Gradient: Environmental Filtering on Taxonomic and Functional Diversity
Cited by: 90
Author(s): Cássio Alencar Nunes, Rodrigo Fagundes Braga, José Eugênio Côrtes Figueira, Frederico S. Neves, G. Wilson Fernandes
Software Mentions: 4
Published: over 8 years ago

10.3390/microorganisms8091267

Investigating Both Mucosal Immunity and Microbiota in Response to Gut Enteritis in Yellowtail Kingfish
Cited by: 17
Author(s): Thibault Philippe Raymond Albert Legrand, James W. Wynne, Laura S. Weyrich, Alan Oxley
Software Mentions: 4
Published: over 4 years ago

10.3389/fmicb.2020.540404

The Total and Active Bacterial Community of the Chlorolichen Cetraria islandica and Its Response to Long-Term Warming in Sub-Arctic Tundra
Cited by: 10
Author(s): Ingeborg J. Klarenberg, Christoph Keuschnig, Denis Warshan, Ingibjörg S. Jónsdóttir, Oddur Vilhelmsson
Software Mentions: 4
Published: almost 4 years ago

10.1007/s00204-021-03132-x

The diarrhetic shellfish-poisoning toxin, okadaic acid, provokes gastropathy, dysbiosis and susceptibility to bacterial infection in a non-rodent bioassay, Galleria mellonella
Cited by: 13
Author(s): Helena Emery, William Traves, Andrew F. Rowley, Christopher J. Coates
Software Mentions: 4
Published: over 3 years ago

10.3389/fmicb.2019.02302

Exploring the Link Between the Geographical Origin of European Fermented Foods and the Diversity of Their Bacterial Communities: The Case of Fermented Meats
Cited by: 35
Author(s): Emiel Niels Van Reckem, Wim Geeraerts, Christina Charmpi, David Van der Veken, Luc De Vuyst, Frédéric Leroy
Software Mentions: 4
Published: about 5 years ago

10.3390/microorganisms8020214

Succession and Colonization Dynamics of Endolithic Phototrophs within Intertidal Carbonates
Cited by: 11
Author(s): Daniel Roush, Ferrán García-Pichel
Software Mentions: 4
Published: almost 5 years ago

10.1128/AEM.00305-19

Bacterial and Fungal Endophytic Microbiomes of Salicornia europaea
Cited by: 46
Author(s): Bliss Ursula Furtado, Marcin Gołębiewski, Monika Skorupa, Piotr Hulisz, Katarzyna Hrynkiewicz
Software Mentions: 4
Published: over 5 years ago

10.3389/fmicb.2019.00347

Microbial Community Diversity Within Sediments from Two Geographically Separated Hadal Trenches
Cited by: 49
Author(s): Logan M. Peoples, Eleanna Grammatopoulou, Michelle Pombrol, Xu Xin, Oladayo Osuntokun, Jessica M. Blanton, Eric E. Allen, Clifton C. Nunnally, Jeffrey C. Drazen, Daniel J. Mayor, Douglas H. Bartlett
Software Mentions: 4
Published: over 5 years ago

10.3389/fmicb.2017.00902

The Effects of Cropping Regimes on Fungal and Bacterial Communities of Wheat and Faba Bean in a Greenhouse Pot Experiment Differ between Plant Species and Compartment
Cited by: 77
Author(s): Sandra Granzow, Kristin Kaiser, Bernd Wemheuer, Birgit Pfeiffer, Rolf Daniel, Stefan Vidal, Franziska Wemheuer
Software Mentions: 4
Published: over 7 years ago

10.1128/AEM.02470-17

Influence of Pig Farming on the Human Nasal Microbiota: Key Role of Airborne Microbial Communities
Cited by: 59
Author(s): Julia G. Kraemer, Alban Ramette, Suzanne Aebi, Anne Oppliger, Markus Hilty
Software Mentions: 4
Published: over 6 years ago

10.1128/mSystems.00857-19

Depletion of Blautia Species in the Microbiota of Obese Children Relates to Intestinal Inflammation and Metabolic Phenotype Worsening
Cited by: 165
Author(s): Alfonso Benı́tez-Páez, Eva M. Gómez del Pugar, Inmaculada López-Almela, Ángela Moya-Pérez, Pilar Codoñer‐Franch, Yolanda Sanz
Software Mentions: 4
Published: over 4 years ago

10.3390/microorganisms9020411

Gut Microbiomes of Freshwater Mussels (Unionidae) Are Taxonomically and Phylogenetically Variable across Years but Remain Functionally Stable
Cited by: 12
Author(s): Mark McCauley, Marlène Chiarello, Carla L. Atkinson, Colin R. Jackson
Software Mentions: 4
Published: almost 4 years ago

10.3389/fmicb.2020.00133

Consequences of Domestication on Gut Microbiome: A Comparative Study Between Wild Gaur and Domestic Mithun
Cited by: 15
Author(s): Vandana R. Prabhu, . Wasimuddin, Ranganathan Kamalakkannan, Moolamkudy Suresh Arjun, Muniyandi Nagarajan
Software Mentions: 4
Published: over 4 years ago

10.3389/fmicb.2018.01188

Canola Root–Associated Microbiomes in the Canadian Prairies
Cited by: 67
Author(s): Chih Ying Lay, Terrence H. Bell, Chantal Hamel, K. Neil Harker, Ramona M. Mohr, Charles W. Greer, Étienne Yergeau, Marc St‐Arnaud
Software Mentions: 4
Published: over 6 years ago

10.3390/ani10040676

Transport to the Slaughterhouse Affects the Salmonella Shedding and Modifies the Fecal Microbiota of Finishing Pigs
Cited by: 11
Author(s): Francesca Romana Massacci, Alessandra Morelli, Lucilla Cucco, Adrien Castinel, Roberta Ortenzi, Silvia Tofani, Giovanni Pezzotti, Jordi Estellé, Marta Paniccià, Chiara Francesca Magistrali
Software Mentions: 4
Published: over 4 years ago

10.1186/s12866-021-02119-z

Diversity and plant growth-promoting potential of (un)culturable bacteria in the Hedera helix phylloplane
Cited by: 7
Author(s): Vincent Stevens, Sofie Thijs, Jaco Vangronsveld
Software Mentions: 4
Published: over 3 years ago

10.1128/mSystems.00268-20

Impact of Glyphosate on the Honey Bee Gut Microbiota: Effects of Intensity, Duration, and Timing of Exposure
Cited by: 49
Author(s): Erick V. S. Motta, Nancy A. Moran
Software Mentions: 4
Published: over 4 years ago

10.3389/fmicb.2020.590212

Gut Microbiomes Differ Among Dietary Types and Stool Consistency in the Captive Red Wolf (Canis rufus)
Cited by: 19
Author(s): Morgan Bragg, Elizabeth W. Freeman, Haw Chuan Lim, Nucharin Songsasen, Carly R. Muletz‐Wolz
Software Mentions: 4
Published: about 4 years ago

10.3390/microorganisms9020357

Soil Bacterial Diversity Is Positively Correlated with Decomposition Rates during Early Phases of Maize Litter Decomposition
Cited by: 18
Author(s): Akane Chiba, Yoshitaka Uchida, Susanne Kublik, Gisle Vestergaard, Franz Buegger, Michael Schloter, Stefanie Schulz
Software Mentions: 4
Published: almost 4 years ago

10.3390/microorganisms8081146

Dynamics of the Honeybee (Apis mellifera) Gut Microbiota Throughout the Overwintering Period in Canada
Cited by: 19
Author(s): Naomie Bleau, Sidki Bouslama, Pierre Giovenazzo, Nicolas Derôme
Software Mentions: 4
Published: over 4 years ago

10.3389/fmicb.2021.718727

Soil Fungal Community in Grazed Inner Mongolian Grassland Adjacent to Coal-Mining Activity
Cited by: 2
Author(s): Liji Xie, Yinli Bi, Xianglei Li, Kun Wang, Peter Christie
Software Mentions: 4
Published: about 3 years ago

10.1371/journal.pone.0219633

Contributions to human breast milk microbiome and enteromammary transfer of Bifidobacterium breve
Cited by: 72
Author(s): Kattayoun Kordy, Thaidra Gaufin, Martin Mwangi, Ли Фан, Chiara Cerini, Dong Hoon Lee, Helty Adisetiyo, Cora L. Woodward, Pia S. Pannaraj, Nicole H. Tobin, Grace M. Aldrovandi
Software Mentions: 4
Published: almost 5 years ago

10.1007/s00253-018-8932-6

Insights into microbial communities mediating the bioremediation of hydrocarbon-contaminated soil from an Alpine former military site
Cited by: 63
Author(s): J.A. Siles, Rosa Margesin
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pone.0212949

The nasal and oropharyngeal microbiomes of healthy livestock workers
Cited by: 15
Author(s): Ashley E. Kates, Mark Dalman, James C. Torner, Tara C. Smith
Software Mentions: 4
Published: over 5 years ago

10.3389/fmicb.2020.01636

Evidence of Vent-Adaptation in Sponges Living at the Periphery of Hydrothermal Vent Environments: Ecological and Evolutionary Implications
Cited by: 12
Author(s): Magdalena N. Georgieva, Sergi Taboada, Ana Riesgo, Cristina Díez‐Vives, Fabio C. De Leo, Rachel M. Jeffreys, Jonathan T. Copley, Crispin T. S. Little, Pilar Ríos, Javier Cristobo, Jon Thomassen Hestetun, Adrian G. Glover
Software Mentions: 4
Published: over 4 years ago

10.3390/microorganisms9061157

Does the Composition of the Gut Bacteriome Change during the Growth of Tuna?
Cited by: 5
Author(s): Elsa Gadoin, Lucile Durand, Aurélie Guillou, Sandrine Crochemore, Thierry Bouvier, Emmanuelle Roque, Laurent Dagorn, Jean‐Christophe Auguet, Antoinette Adingra, Christelle Desnues, Yvan Bettarel
Software Mentions: 4
Published: over 3 years ago

10.1186/s12575-021-00148-6

Nasopharyngeal Microbiota in SARS-CoV-2 Positive and Negative Patients
Cited by: 22
Author(s): Phillip A. Engen, Ankur Naqib, Cheryl Jennings, Stefan J. Green, Alan Landay, Ali Keshavarzian, Robin M. Voigt
Software Mentions: 4
Published: over 3 years ago

10.3389/fmicb.2021.683814

Comparative Genomic Insights Into the Taxonomic Classification, Diversity, and Secondary Metabolic Potentials of Kitasatospora, a Genus Closely Related to Streptomyces
Cited by: 10
Author(s): Yisong Li, Meng Wang, Zhuo Sun, Bin-Bin Xie
Software Mentions: 4
Published: over 3 years ago

10.1186/s40168-019-0776-5

Coral microbiome composition along the northern Red Sea suggests high plasticity of bacterial and specificity of endosymbiotic dinoflagellate communities
Cited by: 55
Author(s): Eslam O. Osman, David J. Suggett, Christian R. Voolstra, D. Tye Pettay, Dave R. Clark, Claudia Pogoreutz, Eugenia M. Sampayo, Mark E. Warner, David J. Smith
Software Mentions: 4
Published: almost 5 years ago

10.3389/fmicb.2021.643904

Predominant Microbial Colonizers in the Root Endosphere and Rhizosphere of Turfgrass Systems: Pseudomonas veronii, Janthinobacterium lividum, and Pseudogymnoascus spp.
Cited by: 10
Author(s): Qing Xia, Thomas W. Rufty, Wei Shi
Software Mentions: 4
Published: over 3 years ago

10.1186/s40168-018-0603-4

A comparative study of the gut microbiota in immune-mediated inflammatory diseases—does a common dysbiosis exist?
Cited by: 238
Author(s): Jessica D. Forbes, Chih-Yu Chen, Natalie Knox, Ruth Ann Marrie, Hani El-Gabalawy, Teresa de Kievit, Michelle J. Alfa, Çharles N. Bernstein, Gary Van Domselaar
Software Mentions: 4
Published: almost 6 years ago

10.1128/mSystems.00340-20

Evaluating Organism-Wide Changes in the Metabolome and Microbiome following a Single Dose of Antibiotic
Cited by: 5
Author(s): Alison Vrbanac, Kathryn A. Patras, Alan K. Jarmusch, Robert H. Mills, Samuel R. Shing, Robert A. Quinn, Fernando Vargas, Kyung E. Rhee, Pieter C. Dorrestein, Rob Knight, Victor Nizet
Software Mentions: 4
Published: about 4 years ago

10.3389/fmicb.2021.688754

High Potential for Secondary Metabolite Production of Paracoccus marcusii CP157, Isolated From the Crustacean Cancer pagurus
Cited by: 7
Author(s): Janina Leinberger, Jonas Holste, Boyke Bunk, Heike M. Freese, Cathrin Spröer, Leon Dlugosch, Anna-Carlotta Kück, Stefan Schulz, Thorsten Brinkhoff
Software Mentions: 4
Published: over 3 years ago

10.1128/mSystems.00834-20

Infant Skin Bacterial Communities Vary by Skin Site and Infant Age across Populations in Mexico and the United States
Cited by: 16
Author(s): Melissa B. Manus, Sahana Kuthyar, Ana Gabriela Perroni‐Marañón, Alejandra Núñez‐de la Mora, Katherine R. Amato
Software Mentions: 4
Published: almost 4 years ago

10.1128/AEM.02673-20

The Effects of Soil Depth on the Structure of Microbial Communities in Agricultural Soils in Iowa (United States)
Cited by: 53
Author(s): Jingjie Hao, Yen Ning Chai, Lucas Dantas Lopes, Raziel A. Ordóñez, Emily E. Wright, Sotirios Archontoulis, Daniel P. Schachtman
Software Mentions: 4
Published: almost 4 years ago

10.6026/97320630016567

Bacterial community dynamics with rhizosphere of Calotropis procera and Senna alexandrina desert plants in Saudi Arabia
Cited by: 4
Author(s): Diana A. Al-Quwaie
Software Mentions: 4
Published: about 4 years ago

10.3389/fmicb.2015.00891

Soil bacterial and fungal community responses to nitrogen addition across soil depth and microhabitat in an arid shrubland
Cited by: 85
Author(s): Rebecca C. Mueller, Jayne Belnap, Cheryl R. Kuske
Software Mentions: 4
Published: about 9 years ago

10.1186/s40168-019-0707-5

Comparison of the microbiomes of two drinking water distribution systems—with and without residual chloramine disinfection
Cited by: 55
Author(s): Michael B. Waak, Raymond M. Hozalski, Cynthia Hallé, Timothy M. LaPara
Software Mentions: 4
Published: over 5 years ago

10.1186/s40168-020-00859-0

Engineering CRISPR/Cas9 to mitigate abundant host contamination for 16S rRNA gene-based amplicon sequencing
Cited by: 22
Author(s): Luyang Song, Kabin Xie
Software Mentions: 4
Published: over 4 years ago

10.1002/advs.201902862

Gut Microbial Signatures Can Discriminate Unipolar from Bipolar Depression
Cited by: 75
Author(s): Peng Zheng, Jian Yang, Yifan Li, Jing Wu, Weiwei Liang, Bangmin Yin, Xunmin Tan, Yu Huang, Tingjia Chai, Hanping Zhang, Jiajia Duan, Jingjing Zhou, Zuoli Sun, Chen Xu, Subhi Marwari, Jianbo Lai, Tingting Huang, Yanli Du, Peifen Zhang, Seth W. Perry, Ma‐Li Wong, Júlio Licinio, Shaohua Hu, Peng Xie, Gang Wang
Software Mentions: 4
Published: almost 5 years ago

10.1186/s40168-021-01055-4

Whole lung tissue is the preferred sampling method for amplicon-based characterization of murine lung microbiota
Cited by: 18
Author(s): Jennifer M. Baker, Kevin J. Hinkle, Roderick A. McDonald, Christopher Brown, Nicole R. Falkowski, Gary B. Huffnagle, Robert P. Dickson
Software Mentions: 4
Published: over 3 years ago

10.3390/nu12113557

High Fat-High Fructose Diet-Induced Changes in the Gut Microbiota Associated with Dyslipidemia in Syrian Hamsters
Cited by: 29
Author(s): Rachael Horne, Yifan Yu, Rianna Zhang, Nyan Abdalqadir, Laura Rossi, Michael G. Surette, Philip M. Sherman, Khosrow Adeli
Software Mentions: 4
Published: about 4 years ago

10.3389/fmicb.2020.00322

Metatranscriptomics Reveals Antibiotic-Induced Resistance Gene Expression in the Murine Gut Microbiota
Cited by: 11
Author(s): Benjamin J. Korry, Damien J. Cabral, Peter Belenky
Software Mentions: 4
Published: over 4 years ago

10.3390/nu12102938

Diet Quality, Food Groups and Nutrients Associated with the Gut Microbiota in a Nonwestern Population
Cited by: 17
Author(s): Ángela S García-Vega, Vanessa Corrales-Agudelo, Alejandro Reyes, Juan S. Escobar
Software Mentions: 4
Published: about 4 years ago

10.3389/fmicb.2020.562546

Bacterial Communities Are More Sensitive to Water Addition Than Fungal Communities Due to Higher Soil K and Na in a Degraded Karst Ecosystem of Southwestern China
Cited by: 4
Author(s): Muhammad Umair, Ning Sun, Hongmei Du, Nan Hui, Muhammad Altaf, Baoming Du, Shan Yin, Chunjiang Liu
Software Mentions: 4
Published: about 4 years ago

10.3390/nu12113450

Metabolomic and Metataxonomic Fingerprinting of Human Milk Suggests Compositional Stability over a Natural Term of Breastfeeding to 24 Months
Cited by: 7
Author(s): Natalie Shenker, Alvaro Perdones‐Montero, Adam Burke, Sarah Stickland, Julie A. K. McDonald, Kate Alexander-Hardiman, James M. Flanagan, Zoltan Takáts, Simon Cameron
Software Mentions: 4
Published: about 4 years ago

10.3390/nu11061390

Influence of Socio-Economic and Psychosocial Profiles on the Human Breast Milk Bacteriome of South African Women
Cited by: 14
Author(s): Anna Ojo-Okunola, Shantelle Claassen-Weitz, Kilaza Samson Mwaikono, Sugnet Gardner-Lubbe, Dan J. Stein, Heather J. Zar, Mark P. Nicol, Elloise du Toit
Software Mentions: 4
Published: over 5 years ago

10.1128/AEM.02658-18

Bacterial Dispersers along Preferential Flow Paths of a Clay Till Depth Profile
Cited by: 5
Author(s): Urse Scheel Krüger, Arnaud Dechesne, Friedhelm Bak, Nora Badawi, Ole Nybroe, Jens Aamand
Software Mentions: 4
Published: over 5 years ago

10.1186/s12917-020-02430-3

Gut microbiota profiles of commercial laying hens infected with tumorigenic viruses
Cited by: 1
Author(s): Xianhua Wan, Laipeng Xu, Xiaolun Sun, Hui Li, Fengbin Yan, Ruili Han, Hong Li, Zhuanjian Li, Yadong Tian, Xiaojun Liu, Xin Kang, Zhenya Wang, Yanbin Wang
Software Mentions: 4
Published: over 4 years ago

10.1186/s40168-019-0724-4

Reproducible changes in the gut microbiome suggest a shift in microbial and host metabolism during spaceflight
Cited by: 65
Author(s): Peng Jiang, Stefan J. Green, George E. Chlipala, Fred W. Turek, Martha Hotz Vitaterna
Software Mentions: 4
Published: over 5 years ago

10.3390/nu12051257

Prebiotic Effects of Partially Hydrolyzed Guar Gum on the Composition and Function of the Human Microbiota—Results from the PAGODA Trial
Cited by: 35
Author(s): Simon Reider, Simon Moosmang, J Tragust, Lovro Trgovec-Greif, Simon Tragust, Lorenz Perschy, Nicole Przysiecki, Sonja Sturm, Herbert Tilg, Hermann Stuppner, Thomas Rattei, Alexander R. Moschen
Software Mentions: 4
Published: over 4 years ago

10.3389/fmicb.2020.616875

Curing of Cocoa Beans: Fine-Scale Monitoring of the Starter Cultures Applied and Metabolomics of the Fermentation and Drying Steps
Cited by: 19
Author(s): Cristian Díaz-Muñoz, Dario Van de Voorde, Andrea Comasio, Marko Verce, Carlos Eduardo Hernandez, Stefan Weckx, Luc De Vuyst
Software Mentions: 4
Published: almost 4 years ago

10.1186/s40168-021-01115-9

Gut microbiota from green tea polyphenol-dosed mice improves intestinal epithelial homeostasis and ameliorates experimental colitis
Cited by: 181
Author(s): Zhenhua Wu, Shimeng Huang, Tiantian Li, Na Li, Dandan Han, Bing Zhang, Zhenjiang Xu, Shiyi Zhang, Jiaman Pang, Shilan Wang, Guolong Zhang, Jiangchao Zhao, Junjun Wang
Software Mentions: 4
Published: about 3 years ago

10.1186/s40168-018-0400-0

Effects of predation stress and food ration on perch gut microbiota
Cited by: 47
Author(s): Yinghua Zha, Alexander Eiler, Frank Johansson, Richard Svanbäck
Software Mentions: 4
Published: almost 7 years ago

10.1186/s42523-021-00076-6

Flexibility and resilience of great tit (Parus major) gut microbiomes to changing diets
Cited by: 23
Author(s): Kasun H. Bodawatta, Inga Freiberga, Kateřina Pužejová, Kateřina Sam, Michael Poulsen, Knud A. Jønsson
Software Mentions: 4
Published: almost 4 years ago

10.3390/nu12041063

Specific Dietary Components and Gut Microbiota Composition are Associated with Obesity in Children and Adolescents with Prader–Willi Syndrome
Cited by: 16
Author(s): Sonika Garcia-Ribera, Montse Amat-Bou, Eric Climent, M. Villangómez Llobet, Empar Chenoll, Raquel Corripio, Lourdes Ibáñez, Marta Ramón-Krauel, Carles Lerín
Software Mentions: 4
Published: over 4 years ago

10.3389/fmicb.2018.02094

Application of MootralTM Reduces Methane Production by Altering the Archaea Community in the Rumen Simulation Technique
Cited by: 27
Author(s): Melanie Eger, Michael Graz, Susanne Riede, Gerhard Breves
Software Mentions: 4
Published: about 6 years ago

10.1186/s40168-016-0178-x

Variable responses of human microbiomes to dietary supplementation with resistant starch
Cited by: 257
Author(s): Arvind Venkataraman, Jessica R. Sieber, Alex W. Schmidt, Clive Waldron, Kevin R. Theis, Thomas M. Schmidt
Software Mentions: 4
Published: over 8 years ago

10.1186/s40168-019-0645-2

Environmental toxicants in breast milk of Norwegian mothers and gut bacteria composition and metabolites in their infants at 1 month
Cited by: 99
Author(s): Nina Iszatt, Stefan Janssen, Virissa Lenters, Cecilie Dahl, Hein Stigum, Rob Knight, Siddhartha Mandal, Shyamal Peddada, Antonio González, Tore Midtvedt, Merete Eggesbø
Software Mentions: 4
Published: over 5 years ago

10.1186/s42523-021-00101-8

Effect of sequentially fed high protein, hydrolyzed protein, and high fiber diets on the fecal microbiota of healthy dogs: a cross-over study
Cited by: 9
Author(s): Lina María Martínez-López, Amy Pepper, Rachel Pilla, Andrew Woodward, Jan S. Suchodolski, Caroline Mansfield
Software Mentions: 4
Published: over 3 years ago

10.1186/s40168-018-0518-0

Bacterial microbiota protect an invasive bark beetle from a pine defensive compound
Cited by: 47
Author(s): Chihang Cheng, Jacob D. Wickham, Li Chen, Dandan Xu, Min Lü, Jianghua Sun
Software Mentions: 4
Published: over 6 years ago

10.1038/s41396-019-0435-7

Rethinking gut microbiome residency and the Enterobacteriaceae in healthy human adults
Cited by: 81
Author(s): Jonathan N. V. Martinson, Nicholas V. Pinkham, Garrett W. Peters, Hanbyul Cho, Jeremy Heng, Mychiel Rauch, Susan C. Broadaway, Seth T. Walk
Software Mentions: 4
Published: over 5 years ago

10.1186/s13568-020-01119-y

Dissimilarity of microbial diversity of pond water, shrimp intestine and sediment in Aquamimicry system
Cited by: 23
Author(s): Shenzheng Zeng, Sukontorn Khoruamkid, Warinphorn Kongpakdee, Dongdong Wei, Lingfei Yu, Hao Wang, Zhao‐Peng Deng, Shaoping Weng, Zhijian Huang, Jianguo He, Kriengkrai Satapornvanit
Software Mentions: 4
Published: about 4 years ago

10.1186/s40168-020-0788-1

Gastric bypass surgery in a rat model alters the community structure and functional composition of the intestinal microbiota independently of weight loss
Cited by: 37
Author(s): Sven-Bastiaan Haange, Nico Jehmlich, Ute Krügel, Constantin A. Hintschich, Dorothee Wehrmann, Mohammed K. Hankir, Florian Seyfried, Jean Froment, Thomas Hübschmann, Susann Müller, Dirk K. Wissenbach, Kang Kang, Christian Buettner, Gianni Panagiotou, Matthias Noll, Ulrike Rolle-Kampczyk, Wiebke Fenske, Martin von Bergen
Software Mentions: 4
Published: almost 5 years ago

10.1186/s12884-021-03855-w

Association between premature ovarian insufficiency and gut microbiota
Cited by: 15
Author(s): Jiaman Wu, Yuanyuan Zhuo, Yu-Lei Liu, Yan Chen, Yan Ning, Jilong Yao
Software Mentions: 4
Published: over 3 years ago

10.1038/s41396-018-0059-3

Suppression of the activity of arbuscular mycorrhizal fungi by the soil microbiota
Cited by: 105
Author(s): Nanna Bygvraa Svenningsen, Stephanie J. Watts‐Williams, Erik J. Joner, Fabio Battini, Aikaterini Efthymiou, Carla Cruz-Paredes, Ole Nybroe, Iver Jakobsen
Software Mentions: 4
Published: almost 7 years ago

10.1186/s12870-018-1602-0

Dual RNA-seq analysis provides new insights into interactions between Norway spruce and necrotrophic pathogen Heterobasidion annosum s.l.
Cited by: 31
Author(s): Andriy Kovalchuk, Zhen Zeng, Rajendra P. Ghimire, Minna Kivimäenpää, Tommaso Raffaello, Mengxia Liu, Mukrimin Mukrimin, Risto Kasanen, Hui Sun, Riitta Julkunen‐Tiitto, Jarmo K. Holopainen, Fred O. Asiegbu
Software Mentions: 4
Published: almost 6 years ago

10.1186/s40168-016-0214-x

Influence of maternal breast milk ingestion on acquisition of the intestinal microbiome in preterm infants
Cited by: 140
Author(s): Katherine E. Gregory, Buck S. Samuel, Pearl Houghteling, Shan Guru, Frederick M. Ausubel, Ruslan I. Sadreyev, W. Allan Walker
Software Mentions: 4
Published: almost 8 years ago

10.1186/s40168-018-0515-3

Breast cancer in postmenopausal women is associated with an altered gut metagenome
Cited by: 157
Author(s): Jia Zhu, Ming Liao, Ziting Yao, Wenying Liang, Qibin Li, Jianlun Liu, Huawei Yang, Yinan Ji, Wei Wei, Aihua Tan, Sai Liang, Yang Chen, Haisong Lin, Xinyuan Zhu, Shengzhu Huang, Jiarong Tian, Rongjiang Tang, Qiuyan Wang, Zengnan Mo
Software Mentions: 4
Published: over 6 years ago

10.3934/microbiol.2019.1.62

Stability of temperate coral Astrangia poculata microbiome is reflected across different sequencing methodologies
Cited by: 5
Author(s): Dawn B. Goldsmith, Zoe A. Pratte, Christina A. Kellogg, Sara E. Snader, Koty Sharp
Software Mentions: 4
Published: almost 6 years ago

10.1128/AEM.01336-19

Surface Water Microbial Community Response to the Biocide 2,2-Dibromo-3-Nitrilopropionamide, Used in Unconventional Oil and Gas Extraction
Cited by: 11
Author(s): Maria Fernanda Campa, Stephen M. Techtmann, Mallory P. Ladd, Jun Yan, Megan Patterson, Amanda Garcia de Matos Amaral, Kimberly E. Carter, Nikea Ulrich, Christopher J. Grant, Robert L. Hettich, Regina Lamendella, Terry C. Hazen
Software Mentions: 4
Published: about 5 years ago

10.1186/s40168-019-0778-3

Warming-induced permafrost thaw exacerbates tundra soil carbon decomposition mediated by microbial community
Cited by: 66
Author(s): Jiajie Feng, Cong Wang, Jiesi Lei, Yunfeng Yang, Qingyun Yan, Xuelong Zhou, Xuanyu Tao, Daliang Ning, Mengting Yuan, Yujia Qin, Zhou Shi, Xue Guo, Zhili He, Joy D. Van Nostrand, Liyou Wu, Rosvel G. Bracho-Garillo, C. Ryan Penton, James R. Cole, Konstantinos T. Konstantinidis, Yiqi Luo, Edward A. G. Schuur, James M. Tiedje, Jizhong Zhou
Software Mentions: 4
Published: almost 5 years ago

10.3389/fmicb.2021.641141

Gut Structure and Microbial Communities in Sirex noctilio (Hymenoptera: Siricidae) and Their Predicted Contribution to Larval Nutrition
Cited by: 9
Author(s): Jiale Li, Chengcheng Li, Ming Wang, Lixiang Wang, Xiaobo Liu, Chenglong Gao, Lili Ren, Luo YouQing
Software Mentions: 4
Published: over 3 years ago

10.1186/s42523-021-00098-0

The microbiota of healthy dogs demonstrates individualized responses to synbiotic supplementation in a randomized controlled trial
Cited by: 6
Author(s): Jirayu Tanprasertsuk, Aashish R. Jha, Justin Shmalberg, Roshonda B. Jones, Lee M. Perry, Heather Maughan, Ryan W. Honaker
Software Mentions: 4
Published: over 3 years ago

10.3389/fmicb.2018.01697

Bacterial Biomarkers of Marcellus Shale Activity in Pennsylvania
Cited by: 11
Author(s): Jeremy R. Chen See, Nikea Ulrich, Hephzibah Nwanosike, Christopher J. McLimans, Vasily Tokarev, Justin Wright, Maria Fernanda Campa, Christopher J. Grant, Terry C. Hazen, Jonathan M. Niles, Daniel Ressler, Regina Lamendella
Software Mentions: 4
Published: over 6 years ago

10.1186/s40168-018-0446-z

Reproducible protocols for metagenomic analysis of human faecal phageomes
Cited by: 127
Author(s): Andrey N. Shkoporov, Feargal J. Ryan, Lorraine A. Draper, Amanda Forde, Stephen R. Stockdale, Karen Daly, Siobhan A. McDonnell, James A. Nolan, Thomas D.S. Sutton, Marion Dalmasso, A. McCann, R. Paul Ross, Colin Hill
Software Mentions: 4
Published: over 6 years ago

10.3389/fmicb.2018.01069

Benchmark Evaluation of True Single Molecular Sequencing to Determine Cystic Fibrosis Airway Microbiome Diversity
Cited by: 6
Author(s): Andrea Hahn, Matthew L. Bendall, Keylie M. Gibson, Hollis Chaney, Iman Sami, Geovanny F. Pérez, Anastassios C. Koumbourlis, Timothy A. McCaffrey, Robert J. Freishtat, Keith A. Crandall
Software Mentions: 4
Published: over 6 years ago

10.3389/fmicb.2020.01363

Microbial Communities Associated With Long-Term Tillage and Fertility Treatments in a Corn-Soybean Cropping System
Cited by: 47
Author(s): Ali Srour, Hala A. Ammar, Arjun Subedi, Mirian F. Pimentel, Rachel L. Cook, Jason P. Bond, Ahmad M. Fakhoury
Software Mentions: 4
Published: over 4 years ago

10.1128/mSystems.00319-21

Facial Skin Microbiota-Mediated Host Response to Pollution Stress Revealed by Microbiome Networks of Individual
Cited by: 7
Author(s): Lu Wang, Yining Xu, Chung-Ching Chu, Zehua Jing, Yabin Chen, Jingsong Zhang, Mingming Pu, Tingyan Mi, Yaping Du, Zong-Qi Liang, Chandraprabha Doraiswamy, Tao Zeng, Jiarui Wu, Luonan Chen
Software Mentions: 4
Published: about 3 years ago

10.3389/fmicb.2020.554105

Diverse Bacterial Communities From Qaidam Basin of the Qinghai–Tibet Plateau: Insights Into Variations in Bacterial Diversity Across Different Regions
Cited by: 6
Author(s): Wei Zhang, Ali Bahadur, Gaosen Zhang, Binglin Zhang, Xiukun Wu, Tuo Chen, Guangxiu Lu
Software Mentions: 4
Published: about 4 years ago

10.1128/mSystems.00116-21

Intermittent Hypoxia and Hypercapnia Alter Diurnal Rhythms of Luminal Gut Microbiome and Metabolome
Cited by: 25
Author(s): Celeste Allaband, Amulya Lingaraju, Cameron Martino, Baylee J. Russell, Anupriya Tripathi, Orit Poulsen, Ana Carolina Dantas Machado, Dan Zhou, Jin Xue, Emmanuel O. Elijah, Atul Malhotra, Pieter C. Dorrestein, Rob Knight, Gabriel G. Haddad, Amir Zarrinpar
Software Mentions: 4
Published: over 3 years ago

10.1128/mSystems.00161-21

Rapid Response of Nitrogen Cycling Gene Transcription to Labile Carbon Amendments in a Soil Microbial Community
Cited by: 17
Author(s): Peter F. Chuckran, Viacheslav Y. Fofanov, Bruce A. Hungate, Ember M. Morrissey, Egbert Schwartz, Jeth Walkup, Paul Dijkstra
Software Mentions: 4
Published: over 3 years ago

10.3389/fmicb.2016.00403

Spatial and Temporal Variation of Cultivable Communities of Co-occurring Endophytes and Pathogens in Wheat
Cited by: 58
Author(s): Morgane Comby, Sandrine Lacoste, Fabienne Baillieul, Camille Profizi, Joëlle Dupont
Software Mentions: 4
Published: over 8 years ago

10.3389/fmicb.2021.726923

Genome-Resolved Metagenomics of the Chicken Gut Microbiome
Cited by: 25
Author(s): Maia Segura-Wang, Nikolaus Grabner, Andreas Koestelbauer, Viviana Klose, Mahdi Ghanbari
Software Mentions: 4
Published: over 3 years ago

10.1186/s12866-021-02230-1

A synbiotic intervention modulates meta-omics signatures of gut redox potential and acidity in elective caesarean born infants
Cited by: 12
Author(s): Christophe Lay, Collins Wenhan Chu, Rikky W. Purbojati, Enzo Acerbi, Daniela I. Drautz–Moses, Paola Flórez de Sessions, Jié Song, Eliza Xin Pei Ho, Yee Jiun Kok, Xinyan Bi, Shuwen Chen, Shi Ya Mak, Mei Chien Chua, Angela Goh, Wen Chin Chiang, Rajeshwar Rao, Surasith Chaithongwongwatthana, Nipon Khemapech, Voranush Chongsrisawat, Rocı́o Martı́n, Yanqing Koh, Sachin R. Lohar, Ivan Chin Hin Tan, Wong Anng Anng, Jie Chen, Nana Bartke, Kaouther Ben-Amor, Ingrid B. Renes, Fiona Wong, Guus Roeselers, Ying Swan Ho, Martin L. Hibberd, Stephan C. Schuster, Jan Knol
Software Mentions: 4
Published: over 3 years ago

10.1128/mSystems.00471-20

Press Disturbance Alters Community Structure and Assembly Mechanisms of Bacterial Taxa and Functional Genes in Mesocosm-Scale Bioreactors
Cited by: 14
Author(s): Ezequiel Santillan, Florentin Constancias, Stefan Wuertz
Software Mentions: 4
Published: over 4 years ago

10.1371/journal.pone.0231759

Links between the rumen microbiota, methane emissions and feed efficiency of finishing steers offered dietary lipid and nitrate supplementation
Cited by: 19
Author(s): J M Bowen, Paul Cormican, S.J. Lister, Matthew S. McCabe, Carol-Anne Duthie, R. Roehe, Richard J. Dewhurst
Software Mentions: 4
Published: over 4 years ago

10.1186/s12866-020-02002-3

Lifestyle modifications result in alterations in the gut microbiota in obese children
Cited by: 21
Author(s): Ky Young Cho
Software Mentions: 4
Published: almost 4 years ago

10.1128/mSystems.00692-19

The Gut Microbiota in Camellia Weevils Are Influenced by Plant Secondary Metabolites and Contribute to Saponin Degradation
Cited by: 39
Author(s): Shouke Zhang, Jinping Shu, Huai‐Jun Xue, Wei Zhang, Yabo Zhang, Yaning Liu, Linxin Fang, Yangdong Wang, Haojie Wang
Software Mentions: 4
Published: over 4 years ago

10.1128/mSystems.00783-19

Space Is More Important than Season when Shaping Soil Microbial Communities at a Large Spatial Scale
Cited by: 61
Author(s): Kaoping Zhang, Manuel Delgado‐Baquerizo, Yong‐Guan Zhu, Haiyan Chu
Software Mentions: 4
Published: over 4 years ago

10.3389/fmicb.2020.00380

Diet and Genotype of an Aquatic Invertebrate Affect the Composition of Free-Living Microbial Communities
Cited by: 32
Author(s): Emilie Macke, Martijn Callens, François Massol, Isabel Vanoverberghe, Luc De Meester, Ellen Decaestecker
Software Mentions: 4
Published: over 4 years ago

Projects: cran: PERMANOVA

Papers Mentioning PERMANOVA 6,292