Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: cran: PERMANOVA

https://packages.ecosyste.ms/registries/cran.r-project.org/packages/PERMANOVA

Multivariate Analysis of Variance Based on Distances and Permutations
2 versions
Latest release: about 3 years ago
299 downloads last month

Papers Mentioning PERMANOVA 6,292

10.1128/mBio.03186-19
Fecal Metabolomic Signatures in Colorectal Adenoma Patients Are Associated with Gut Microbiota and Early Events of Colorectal Cancer Pathogenesis
Cited by: 86
Author(s): Minsuk Kim, Emily Vogtmann, David A. Ahlquist, Mary E. Devens, John B. Kisiel, William R. Taylor, Bryan A. White, Vanessa L. Hale, Jaeyun Sung, Nicholas Chia, Rashmi Sinha, Jun Chen
Software Mentions: 5
Published: over 4 years ago
10.1128/mBio.02635-19
Time after Time: Temporal Variation in the Effects of Grass and Forb Species on Soil Bacterial and Fungal Communities
Cited by: 53
Author(s): S. Emilia Hannula, Anna M. Kielak, Katja Steinauer, Martine Huberty, Renske Jongen, Jonathan R. De Long, Robin Heinen, T. Martijn Bezemer
Software Mentions: 5
Published: almost 5 years ago
10.7717/peerj.3246
Microbial communities in sediment from <i>Zostera marina</i> patches, but not the <i>Z. marina</i> leaf or root microbiomes, vary in relation to distance from patch edge
Cited by: 77
Author(s): Cassandra L. Ettinger, Sofie E. Voerman, Jenna M. Lang, John J. Stachowicz, Jonathan A. Eisen
Software Mentions: 5
Published: over 7 years ago
10.1038/s41598-019-46923-0
The Predominant Oral Microbiota Is Acquired Early in an Organized Pattern
Cited by: 63
Author(s): Rosalyn Sulyanto, Zachary A. Thompson, Clifford J. Beall, Eugene J. Leys, Ann L. Griffen
Software Mentions: 5
Published: over 5 years ago
10.1186/s40168-021-01052-7
Iron status influences non-alcoholic fatty liver disease in obesity through the gut microbiome
Cited by: 54
Author(s): Jordi Mayneris‐Perxachs, Marina Cardellini, Lesley Hoyles, Jéssica Latorre, Francesca Davato, José María Moreno-Navarrete, María Arnoriaga-Rodríguez, Matteo Sérino, James Abbott, Richard H. Barton, Josep Puig, Xavier Fernández-Real, Wifredo Ricart, Christopher Tomlinson, Mark Woodbridge, Paolo Gentileschi, Sarah Butcher, Elaine Holmes, Jeremy K. Nicholson, Vicente Pérez‐Brocal, Andrés Moya, Donald Mc Clain, Rémy Burcelin, Marc Dumas, Massimo Federici, José‐Manuel Fernández‐Real
Software Mentions: 5
Published: over 3 years ago
10.1038/s41598-019-46024-y
Direct and indirect effects of urban gardening on aboveground and belowground diversity influencing soil multifunctionality
Cited by: 24
Author(s): Simon Tresch, David Frey, Renée‐Claire Le Bayon, Paul Mäder, Bernhard Stehle, Andreas Fließbach, Marco Moretti
Software Mentions: 5
Published: over 5 years ago
10.1038/s41598-019-45368-9
Microbial communities in top- and subsoil of repacked soil columns respond differently to amendments but their diversity is negatively correlated with plant productivity
Cited by: 23
Author(s): Corinne Celestina, Jennifer L. Wood, James B. Manson, Xiaojuan Wang, P. W. G. Sale, Caixian Tang, Ashley E. Franks
Software Mentions: 5
Published: over 5 years ago
10.1186/s40168-021-01102-0
Candidate probiotic Lactiplantibacillus plantarum HNU082 rapidly and convergently evolves within human, mice, and zebrafish gut but differentially influences the resident microbiome
Cited by: 22
Author(s): Shi Huang, Shuaiming Jiang, Dongxue Huo, Celeste Allaband, Mehrbod Estaki, Victor Cantu, Pedro Belda-Ferre, Yoshiki Vázquez-Baeza, Qiyun Zhu, Chenchen Ma, Congfa Li, Amir Zarrinpar, Yang‐Yu Liu, Rob Knight, Jiachao Zhang
Software Mentions: 5
Published: over 3 years ago
10.1186/s40168-018-0437-0
Species classifier choice is a key consideration when analysing low-complexity food microbiome data
Cited by: 56
Author(s): Aaron M. Walsh, Fiona Crispie, Órla O’Sullivan, Laura Finnegan, Marcus J. Claesson, Paul D. Cotter
Software Mentions: 5
Published: over 6 years ago
10.1038/s41598-019-44338-5
In-feed bacitracin methylene disalicylate modulates the turkey microbiota and metabolome in a dose-dependent manner
Cited by: 25
Author(s): Timothy A. Johnson, Matthew J. Sylte, Torey Looft
Software Mentions: 5
Published: over 5 years ago
10.7717/peerj.10463
Diversity of microbes colonizing forages of varying lignocellulose properties in the sheep rumen
Cited by: 13
Author(s): Mohammad Farhad Vahidi, Javad Gharechahi, Mehrdad Behmanesh, Xuezhi Ding, Jianlin Han, Ghasem Hosseini Salekdeh
Software Mentions: 5
Published: almost 4 years ago
10.7717/peerj.8549
Invasive vegetation affects amphibian skin microbiota and body condition
Cited by: 7
Author(s): Obed Hernández‐Gómez, Allison Q. Byrne, Alex R. Gunderson, Thomas S. Jenkinson, Clay F. Noss, Andrew P. Rothstein, Molly C. Womack, Erica Bree Rosenblum
Software Mentions: 5
Published: almost 5 years ago
10.1038/s41598-019-43268-6
Structure and stability of the coral microbiome in space and time
Cited by: 60
Author(s): Courtney M. Dunphy, Tarik C. Gouhier, Nathaniel D. Chu, Steven V. Vollmer
Software Mentions: 5
Published: over 5 years ago
10.1186/s40168-020-00959-x
Microbiome dynamics during the HI-SEAS IV mission, and implications for future crewed missions beyond Earth
Cited by: 21
Author(s): Alexander Mahnert, Cyprien Verseux, Petra Schwendner, Kaisa Koskinen, Christina Kumpitsch, Marcus Blohs, Lisa Wink, Daniela Brunner, Theodora Goessler, Daniela Billi, Christine Moissl-Eichinger
Software Mentions: 5
Published: almost 4 years ago
10.1038/s41598-019-40910-1
Phosphorus source driving the soil microbial interactions and improving sugarcane development
Cited by: 25
Author(s): Thiago Gumière, Alain N. Rousseau, Diogo Paes da Costa, Alice de Souza Cassetari, Simone Raposo Cotta, Fernando Dini Andreote, Silvio José Gumière, Paulo Sérgio Pavinato
Software Mentions: 5
Published: over 5 years ago
10.1038/s41598-018-36709-1
Urogenital schistosomiasis is associated with signatures of microbiome dysbiosis in Nigerian adolescents
Cited by: 27
Author(s): Olumide Ajibola, Aislinn D. Rowan, Clement O. Ogedengbe, Mari B. Mshelia, Damien J. Cabral, Anthonius A. Eze, Stephen K. Obaro, Peter Belenky
Software Mentions: 5
Published: almost 6 years ago
10.1038/s41598-018-35159-z
Taxon-specific responses to different forestry treatments in a temperate forest
Cited by: 28
Author(s): Zoltán Elek, Bence Kovács, Réka Aszalós, Gergely Boros, Ferenc Samu, Flóra Tinya, Péter Ódor
Software Mentions: 5
Published: about 6 years ago
10.1038/s41598-018-34619-w
A multiscale study of fungal endophyte communities of the foliar endosphere of native rubber trees in Eastern Amazon
Cited by: 28
Author(s): Aline B. M. Vaz, Paula Luize Camargos Fonseca, Fernanda Badotti, Demetra Skaltsas, Luiz Marcelo Ribeiro Tomé, Allefi C. Silva, Mayara C. Cunha, Marco A. Soares, Vera Lúcia dos Santos, Guilherme Oliveira, Priscilla Chaverri, Aristóteles Goés-Neto
Software Mentions: 5
Published: about 6 years ago
10.1038/s41598-018-32917-x
Metabarcoding of marine environmental DNA based on mitochondrial and nuclear genes
Cited by: 42
Author(s): Babett Günther, Thomas Knebelsberger, Hermann Neumann, Silke Laakmann, Pedro Martínez Arbizu
Software Mentions: 5
Published: about 6 years ago
10.1038/s41598-018-31795-7
Macrofungal species distributions depend on habitat partitioning of topography, light, and vegetation in a temperate mountain forest
Cited by: 29
Author(s): Yun Chen, Zuoqiang Yuan, Bi Shi, Xueying Wang, Ye Yongzhong, Jens‐Christian Svenning
Software Mentions: 5
Published: about 6 years ago
10.1002/pld3.122
Metabolomics of sorghum roots during nitrogen stress reveals compromised metabolic capacity for salicylic acid biosynthesis
Cited by: 27
Author(s): Amy M. Sheflin, Dawn Chiniquy, Chaohui Yuan, Emily Goren, Indrajit Kumar, Max Braud, Thomas P. Brutnell, Andrea L. Eveland, Susannah G. Tringe, Peng Liu, Stephen Kresovich, Ellen L. Marsh, Daniel P. Schachtman, Jessica E. Prenni
Software Mentions: 5
Published: over 5 years ago
10.1038/s41598-017-04016-w
Deciphering biodiversity and interactions between bacteria and microeukaryotes within epilithic biofilms from the Loue River, France
Cited by: 30
Author(s): Anouk Zancarini, Isidora Echenique‐Subiabre, Didier Debroas, Najwa Taïb, Catherine Quiblier, Jean‐François Humbert
Software Mentions: 5
Published: over 7 years ago
10.1038/s41598-017-00223-7
Weaning age influences the severity of gastrointestinal microbiome shifts in dairy calves
Cited by: 78
Author(s): S. J. Meale, S. C. Li, Paula Azevedo, Hooman Derakhshani, T.J. DeVries, J.C. Plaizier, M.A. Steele, Ehsan Khafipour
Software Mentions: 5
Published: over 7 years ago
10.1038/srep43465
Parasitism perturbs the mucosal microbiome of Atlantic Salmon
Cited by: 86
Author(s): Martin S. Llewellyn, S. Leadbeater, Carlos García, François‐Étienne Sylvain, María Custodio, Keng Pee Ang, Frank C. Powell, Gary R. Carvalho, Simon Creer, J. M. Elliot, Nicolas Derôme
Software Mentions: 5
Published: over 7 years ago
10.1186/s40168-018-0543-z
Quantification of variation and the impact of biomass in targeted 16S rRNA gene sequencing studies
Cited by: 40
Author(s): Jeffrey M. Bender, Fan Li, Helty Adisetiyo, David Lee, Sara Zabih, Long Hung, Thomas A. Wilkinson, Pia S. Pannaraj, Rosemary C. She, Jennifer Dien Bard, Nicole H. Tobin, Grace M. Aldrovandi
Software Mentions: 5
Published: about 6 years ago
10.3389/fpls.2021.694727
The Plastid-Localized AtFtsHi3 Pseudo-Protease of Arabidopsis thaliana Has an Impact on Plant Growth and Drought Tolerance
Cited by: 3
Author(s): Laxmi S. Mishra, Sanatkumar Mishra, Daniel Caddell, Devin Coleman‐Derr, Christiane Funk
Software Mentions: 5
Published: over 3 years ago
10.3389/fpls.2019.00643
Shifts in Ectomycorrhizal Fungal Communities and Exploration Types Relate to the Environment and Fine-Root Traits Across Interior Douglas-Fir Forests of Western Canada
Cited by: 43
Author(s): Camille E. Defrenne, Timothy J. Philpott, Shannon H. A. Guichon, W. Jean Roach, Brian J. Pickles, Suzanne W. Simard
Software Mentions: 5
Published: over 5 years ago
10.1186/s12967-019-1880-9
Timing gone awry: distinct tumour suppressive and oncogenic roles of the circadian clock and crosstalk with hypoxia signalling in diverse malignancies
Cited by: 28
Author(s): Wai Hoong Chang, Alvina G. Lai
Software Mentions: 5
Published: over 5 years ago
10.3389/fpls.2019.01018
Plant Diversity and Fertilizer Management Shape the Belowground Microbiome of Native Grass Bioenergy Feedstocks
Cited by: 17
Author(s): Daniel Revillini, Gail W. T. Wilson, R. M. Miller, Ryan C. Lancione, Nancy Collins Johnson
Software Mentions: 5
Published: over 5 years ago
10.3389/fpls.2018.01001
Environmental Characteristics and Anthropogenic Impact Jointly Modify Aquatic Macrophyte Species Diversity
Cited by: 24
Author(s): Merja Elo, Janne Alahuhta, Antti Kanninen, Kristian Meissner, Katri Seppälä, Mikko Mönkkönen
Software Mentions: 5
Published: over 6 years ago
10.1371/journal.pone.0217121
Removal of an established invader can change gross primary production of native macroalgae and alter carbon flow in intertidal rock pools
Cited by: 1
Author(s): Francesca Rossi, Rosa M. Viejo, Linney Duarte, Fátima Vaz-Pinto, Ignácio Gestoso, Celia Olabarria
Software Mentions: 5
Published: almost 5 years ago
10.1186/s40168-020-00980-0
The pleiotropic effects of prebiotic galacto-oligosaccharides on the aging gut
Cited by: 33
Author(s): Jason W. Arnold, Jeffery Roach, Salvador Fabela, Emily Moorfield, Shengli Ding, R. Eric Blue, Sue F. Dagher, Scott T. Magness, Rita Tamayo, José M. Bruno-Bárcena, M. Andrea Azcárate-Peril
Software Mentions: 5
Published: almost 4 years ago
10.1186/s40168-017-0297-z
Formula diet driven microbiota shifts tryptophan metabolism from serotonin to tryptamine in neonatal porcine colon
Cited by: 69
Author(s): Manish Kumar Saraf, Brian D. Piccolo, Anne K. Bowlin, Kelly E. Mercer, Tanya LeRoith, Sree V. Chintapalli, Kartik Shankar, Thomas M. Badger, Laxmi Yeruva
Software Mentions: 5
Published: over 7 years ago
10.3389/fpls.2020.00203
Influences of Climate on Phyllosphere Endophytic Bacterial Communities of Wild Poplar
Cited by: 19
Author(s): Andrea Firrincieli, Mahsa Khorasani, A. Carolin Frank, Sharon L. Doty
Software Mentions: 5
Published: over 4 years ago
10.1371/journal.pone.0145099
Variability of Symbiodinium Communities in Waters, Sediments, and Corals of Thermally Distinct Reef Pools in American Samoa
Cited by: 54
Author(s): Ross Cunning, Denise M. Yost, Marisa L. Guarinello, Hollie M. Putnam, Ruth D. Gates
Software Mentions: 5
Published: almost 9 years ago
10.3389/fpls.2019.00214
Root-Associated Fungal Communities From Two Phenologically Contrasting Silver Fir (Abies alba Mill.) Groups of Trees
Cited by: 18
Author(s): Tina Unuk, Tijana Martinović, Domen Finžgar, Nataša Šibanc, Tine Grebenc, Hojka Kraigher
Software Mentions: 5
Published: over 5 years ago
10.3389/fpls.2013.00361
Arbuscular mycorrhizal fungi alter above- and below-ground chemical defense expression differentially among Asclepias species
Cited by: 31
Author(s): Rachel L. Vannette, Mark D. Hunter, Sergio Rasmann
Software Mentions: 5
Published: almost 12 years ago
10.1371/journal.pone.0219962
Chronic obstructive pulmonary disease upper airway microbiome is associated with select clinical characteristics
Cited by: 17
Author(s): Alexa A. Pragman, Katherine A. Knutson, Trevor Gould, Shane Hodgson, Richard E. Isaacson, Cavan Reilly, Chris H. Wendt
Software Mentions: 5
Published: over 5 years ago
10.3389/fpls.2020.575861
Effect of Inorganic N Top Dressing and Trichoderma harzianum Seed-Inoculation on Crop Yield and the Shaping of Root Microbial Communities of Wheat Plants Cultivated Under High Basal N Fertilization
Cited by: 29
Author(s): María Illescas, M. Belén Rubio, Víctor Hernández-Ruiz, María E. Morán-Diez, Ángel Emilio Martínez de Alba, Carlos Nicolás, Enrique Monte, Rosa Hermosa
Software Mentions: 5
Published: about 4 years ago
10.1371/journal.pone.0180969
Impact of environmental microbiota on human microbiota of workers in academic mouse research facilities: An observational study
Cited by: 30
Author(s): Peggy S. Lai, Joseph G. Allen, Diane S. Hutchinson, Nadim J. Ajami, Joseph F. Petrosino, Thomas Winters, Christopher Hug, Gary R. Wartenberg, Jose Vallarino, David C. Christiani
Software Mentions: 5
Published: over 7 years ago
10.3389/fonc.2021.650026
Fecal Microbiota and Gut Microbe-Derived Extracellular Vesicles in Colorectal Cancer
Cited by: 33
Author(s): Jihye Park, Nam-Eun Kim, Hyuk Yoon, Cheol Min Shin, Nayoung Kim, Dong Hoon Lee, Jae Yong Park, Chang Hwan Choi, Jae Gyu Kim, Eui Chong Kim, Tae-Seop Shin, Jinho Yang, Young Soo Park
Software Mentions: 5
Published: about 3 years ago
10.3389/fmicb.2021.661410
Short-Term Effect in Soil Microbial Community of Two Strategies of Recovering Degraded Area in Brazilian Savanna: A Pilot Case Study
Cited by: 1
Author(s): Priscila Jane Romano Gonçalves Selari, Luiz Ricardo Olchanheski, Almir José Ferreira, Tiago do Prado Paim, Guido Calgaro, Flávio Lopes Claudio, Estênio Moreira Alves, Darliane de Castro Santos, Welington Luiz Araújo, Fabiano Guimarães Silva
Software Mentions: 5
Published: over 3 years ago
10.3389/fmicb.2020.01075
Depth-Differentiation and Seasonality of Planktonic Microbial Assemblages in the Monterey Bay Upwelling System
Cited by: 18
Author(s): Linta Reji, Bradley B. Tolar, Francisco P. Chávez, Christopher A. Francis
Software Mentions: 5
Published: over 4 years ago
10.3389/fmicb.2021.653880
Interactions Between Tsetse Endosymbionts and Glossina pallidipes Salivary Gland Hypertrophy Virus in Glossina Hosts
Cited by: 4
Author(s): Güler Demirbaş-Uzel, Antonios A. Augustinos, Vangelis Doudoumis, Andrew G. Parker, George Tsiamis, Kostas Bourtzis, Adly M. M. Abd-Alla
Software Mentions: 5
Published: over 3 years ago
10.3389/fmicb.2020.01614
Replacing Barley and Soybean Meal With By-products, in a Pasture Based Diet, Alters Daily Methane Output and the Rumen Microbial Community in vitro Using the Rumen Simulation Technique (RUSITEC)
Cited by: 7
Author(s): Pamela M. Smith, Sinéad M. Waters, David A. Kenny, T. M. Boland, J. S. Heffernan, A. K. Kelly
Software Mentions: 5
Published: over 4 years ago
10.1371/journal.pone.0255304
Coral reefs in the Gilbert Islands of Kiribati: Resistance, resilience, and recovery after more than a decade of multiple stressors
Cited by: 22
Author(s): Sara E. Cannon, Erietera Aram, Toaea Beiateuea, A. Kiareti, Max Peter, Simon D. Donner
Software Mentions: 5
Published: over 3 years ago
10.3389/fmicb.2016.02143
Linking Peripartal Dynamics of Ruminal Microbiota to Dietary Changes and Production Parameters
Cited by: 37
Author(s): Hooman Derakhshani, Hein Min Tun, F.C. Cardoso, J.C. Plaizier, Ehsan Khafipour, Juan J. Loor
Software Mentions: 5
Published: almost 8 years ago
10.1186/s40168-021-01134-6
SalmoSim: the development of a three-compartment in vitro simulator of the Atlantic salmon GI tract and associated microbial communities
Cited by: 4
Author(s): Raminta Kazlauskaite, Bachar Cheaib, Chloe Heys, Umer Ijaz, Stephanie Connelly, William T. Sloan, Julie Russel, Laura Rubio, John Sweetman, Alex Kitts, Philip McGinnity, Philip Lyons, Martin S. Llewellyn
Software Mentions: 5
Published: about 3 years ago
10.1371/journal.pone.0140614
Structural Diversity of Bacterial Communities Associated with Bloom-Forming Freshwater Cyanobacteria Differs According to the Cyanobacterial Genus
Cited by: 100
Author(s): Imen Louati, Noémie Pascault, Didier Debroas, Cécile Bernard, Jean‐François Humbert, Julie Leloup
Software Mentions: 5
Published: about 9 years ago
10.1186/s40168-020-00858-1
Using soil bacterial communities to predict physico-chemical variables and soil quality
Cited by: 113
Author(s): Syrie M. Hermans, Hannah Buckley, Bradley S. Case, Fiona Curran-Cournane, Mykel R. Taylor, Gavin Lear
Software Mentions: 5
Published: over 4 years ago
10.3389/fmicb.2021.660749
Positive Effects of Crop Diversity on Productivity Driven by Changes in Soil Microbial Composition
Cited by: 45
Author(s): Laura Stefan, Martin Hartmann, Nadine Engbersen, Johan Six, Christian Schöb
Software Mentions: 5
Published: over 3 years ago
10.1371/journal.pone.0172811
Longitudinal sampling of the lung microbiota in individuals with cystic fibrosis
Cited by: 61
Author(s): Fiona Whelan, Alya Heirali, Laura Rossi, Harvey Rabin, Michael D. Parkins, Michael G. Surette
Software Mentions: 5
Published: over 7 years ago
10.3389/fmicb.2016.00565
Chitin Mixed in Potting Soil Alters Lettuce Growth, the Survival of Zoonotic Bacteria on the Leaves and Associated Rhizosphere Microbiology
Cited by: 59
Author(s): Jane Debode, Caroline De Tender, Saman Soltaninejad, Cinzia Van Malderghem, Annelies Haegeman, Inge Van der Linden, Bart Cottyn, Marc Heyndrickx, Martine Maes
Software Mentions: 5
Published: over 8 years ago
10.3389/fmicb.2019.02902
Exploring Soil Factors Determining Composition and Structure of the Bacterial Communities in Saline-Alkali Soils of Songnen Plain
Cited by: 42
Author(s): Shuang Wang, Lei Sun, Ning Ling, Chen Zhu, Fengqin Chi, Weiqun Li, Xiaoyu Hao, Wu Zhang, Jingyang Bian, Lei Chen, Dan Wei
Software Mentions: 5
Published: almost 5 years ago
10.3389/fmicb.2019.00256
Soil Macroinvertebrate Presence Alters Microbial Community Composition and Activity in the Rhizosphere
Cited by: 25
Author(s): Natalie Bray, Jenny Kao‐Kniffin, Serita D. Frey, Timothy J. Fahey, Kyle Wickings
Software Mentions: 5
Published: almost 6 years ago
10.3389/fmicb.2017.01120
The Arbuscular Mycorrhizal Fungus Funneliformis mosseae Alters Bacterial Communities in Subtropical Forest Soils during Litter Decomposition
Cited by: 31
Author(s): Heng Gui, Witoon Purahong, Kevin D. Hyde, Jianchu Xu, Peter E. Mortimer
Software Mentions: 5
Published: over 7 years ago
10.3389/fmicb.2019.00481
Fungal-Bacterial Networks in the Populus Rhizobiome Are Impacted by Soil Properties and Host Genotype
Cited by: 40
Author(s): Gregory Bonito, Gian Maria Niccolò Benucci, Khalid Hameed, Deborah Weighill, Piet Jones, Ko‐Hsuan Chen, Daniel Jacobson, Christopher W. Schadt, Rytas Vilgalys
Software Mentions: 5
Published: over 5 years ago
10.3389/fmicb.2021.616730
Antarctic Water Tracks: Microbial Community Responses to Variation in Soil Moisture, pH, and Salinity
Cited by: 10
Author(s): Scott F. George, Noah Fierer, J. S. Levy, Byron J. Adams
Software Mentions: 5
Published: almost 4 years ago
10.3389/fmicb.2019.01519
Tree Species Shape Soil Bacterial Community Structure and Function in Temperate Deciduous Forests
Cited by: 57
Author(s): Amélie Dukunde, Dominik Schneider, M. Schmidt, Edzo Veldkamp, Rolf Daniel
Software Mentions: 5
Published: over 5 years ago
10.3389/fmicb.2021.683685
Characterization of Supragingival Plaque and Oral Swab Microbiomes in Children With Severe Early Childhood Caries
Cited by: 13
Author(s): Vivianne Cruz de Jesus, Mohd Wasif Khan, Betty-Anne Mittermuller, Kangmin Duan, Pingzhao Hu, Robert J Schroth, Prashen Chelikani
Software Mentions: 5
Published: over 3 years ago
10.1371/journal.pone.0049263
Nocturnal Homing: Learning Walks in a Wandering Spider?
Cited by: 18
Author(s): Thomas Nørgaard, Yakir Luc Gagnon, Eric J. Warrant
Software Mentions: 5
Published: about 12 years ago
10.3389/fmicb.2019.02066
Use of RNA and DNA to Identify Mechanisms of Bacterial Community Homogenization
Cited by: 16
Author(s): Kyle Meyer, Ian A. B. Petersen, Elie Tobi, Lisa Körte, Brendan J. M. Bohannan
Software Mentions: 5
Published: about 5 years ago
10.3389/fmicb.2021.617280
Electron Acceptor Availability Shapes Anaerobically Methane Oxidizing Archaea (ANME) Communities in South Georgia Sediments
Cited by: 9
Author(s): Annika Schnakenberg, David A. Aromokeye, Ajinkya Kulkarni, Lisa Maier, Lea C Wunder, Tim Richter-Heitmann, Thomas Pape, Petra Pop Ristova, Solveig I Bühring, Ingrid Dohrmann, Gerhard Bohrmann, Sabine Kasten, Michael W. Friedrich
Software Mentions: 5
Published: over 3 years ago
10.3389/fmicb.2018.01526
Bioprospecting and Structure of Fungal Endophyte Communities Found in the Brazilian Biomes, Pantanal, and Cerrado
Cited by: 34
Author(s): Sandriele Aparecida Noriler, Daiani Cristina Savi, Rodrigo Aluízio, Angela María Palacio-Cortés, Yvelise Maria Possiede, Chirlei Glienke
Software Mentions: 5
Published: over 6 years ago
10.3389/fmicb.2020.00101
Predicting Microbiome Function Across Space Is Confounded by Strain-Level Differences and Functional Redundancy Across Taxa
Cited by: 26
Author(s): Elle M. Barnes, Erin L. Carter, James D. Lewis
Software Mentions: 5
Published: almost 5 years ago
10.3389/fmicb.2019.03138
Rare Species Shift the Structure of Bacterial Communities Across Sphagnum Compartments in a Subalpine Peatland
Cited by: 13
Author(s): Wen Tian, Xiang Xiao, Liyuan Ma, Stephanie Evers, Ruicheng Wang, Xuan Qiu, Hongmei Wang
Software Mentions: 5
Published: almost 5 years ago
10.3389/fmicb.2018.01909
Intensified Pulse Rotations Buildup Pea Rhizosphere Pathogens in Cereal and Pulse Based Cropping Systems
Cited by: 25
Author(s): Yining Niu, Luke D. Bainard, William E. May, Zakir Hossain, Chantal Hamel, Yantai Gan
Software Mentions: 5
Published: over 6 years ago
10.3390/nu12082308
Plasma Metabolites Related to Peripheral and Hepatic Insulin Sensitivity Are Not Directly Linked to Gut Microbiota Composition
Cited by: 6
Author(s): Annefleur M. Koopen, Nicolien C. de Clercq, Moritz V. Warmbrunn, Hilde Herrema, Mark Davids, Pieter F. de Groot, Ruud S. Kootte, Kristien E. Bouter, Max Nieuwdorp, Albert K. Groen, Andrei Prodan
Software Mentions: 5
Published: over 4 years ago
10.3389/fmicb.2019.02118
Defining the Distinct Skin and Gut Microbiomes of the Northern Pike (Esox lucius)
Cited by: 20
Author(s): Elizabeth M. Reinhart, Benjamin J. Korry, Aislinn D. Rowan-Nash, Peter Belenky
Software Mentions: 5
Published: about 5 years ago
10.3389/fmicb.2018.02381
How Rainforest Conversion to Agricultural Systems in Sumatra (Indonesia) Affects Active Soil Bacterial Communities
Cited by: 33
Author(s): Dirk Hölscher, Dominik Schneider, Martin Engelhaupt, Melanie Heinemann, Stephan Christel, Marini Wijayanti, Anja Meryandini, Rolf Daniel
Software Mentions: 5
Published: about 6 years ago
10.1371/journal.pone.0248967
The pulmonary mycobiome—A study of subjects with and without chronic obstructive pulmonary disease
Cited by: 13
Author(s): Einar Marius Hjellestad Martinsen, Tomas Mikal Eagan, Elise Orvedal Leiten, Ingvild Haaland, Gunnar Reksten Husebø, Kristel Svalland Knudsen, Christine Drengenes, Walter Sanseverino, Andreu Paytuví-Gallart, Rune Nielsen
Software Mentions: 5
Published: over 3 years ago
10.3390/ijms22189930
Comparative Evaluation of Sucrosomial Iron and Iron Oxide Nanoparticles as Oral Supplements in Iron Deficiency Anemia in Piglets
Cited by: 7
Author(s): Rafał Mazgaj, Paweł Lipiński, Mateusz Szudzik, Aneta Jończy, Z Kopeć, Adrian Stankiewicz, M. Kamyczek, Dorine W. Swinkels, Beata Żelazowska, Rafał R. Starzyński
Software Mentions: 5
Published: about 3 years ago
10.1371/journal.pone.0184515
Unraveling the human salivary microbiome diversity in Indian populations
Cited by: 19
Author(s): Anujit Sarkar, Mark Stoneking, Madhusudan R. Nandineni
Software Mentions: 5
Published: about 7 years ago
10.3390/ijms22115876
Oral Microbiome in Relation to Periodontitis Severity and Systemic Inflammation
Cited by: 31
Author(s): Adelina S. Plachokova, Sergio Andreu‐Sánchez, Marlies P. Noz, Jingyuan Fu, Niels P. Riksen
Software Mentions: 5
Published: over 3 years ago
10.3389/fpubh.2021.710985
Nanopore Sequencing Provides Rapid and Reliable Insight Into Microbial Profiles of Intensive Care Units
Cited by: 16
Author(s): Guilherme Marcelino Viana de Siqueira, Felipe Marcelo Pereira-dos-Santos, Rafael Silva‐Rocha, María-Eugenia Guazzaroni
Software Mentions: 4
Published: about 3 years ago
10.7717/peerj.5682
Hemiparasitic plants increase alpine plant richness and evenness but reduce arbuscular mycorrhizal fungal colonization in dominant plant species
Cited by: 18
Author(s): Michael A. McKibben, Jeremiah A. Henning
Software Mentions: 4
Published: about 6 years ago
10.1128/mBio.01937-21
Mucosal Bacteria Modulate Candida albicans Virulence in Oropharyngeal Candidiasis
Cited by: 16
Author(s): Martinna Bertolini, Roberto Vázquez-Muñoz, Linda Archambault, Siddharth Shah, João Gabriel Silva Souza, Raphael Cavalcante Costa, Angela Thompson, Yanjiao Zhou, Takanori Sobue, Anna Dongari-Bagtzoglou
Software Mentions: 4
Published: about 3 years ago
10.3389/fpls.2016.01468
Altered Precipitation Impacts on Above- and Below-Ground Grassland Invertebrates: Summer Drought Leads to Outbreaks in Spring
Cited by: 40
Author(s): Marcel D. Torode, Kirk Barnett, Sarah L. Facey, Uffe N. Nielsen, Sally A. Power, Scott N. Johnson
Software Mentions: 4
Published: about 8 years ago
10.1002/ece3.5816
Spatial and temporal structure of diversity and demographic dynamics along a successional gradient of tropical forests in southern Brazil
Cited by: 18
Author(s): Cilmar Antônio Dalmaso, Márcia C. M. Marques, Pedro Higuchi, Victor P. Zwiener, Renato Marques
Software Mentions: 4
Published: over 4 years ago
10.1371/journal.pone.0187044
Rapid regrowth and detection of microbial contaminants in equine fecal microbiome samples
Cited by: 19
Author(s): Kalie F. Beckers, Christopher Schulz, Gary W. Childers
Software Mentions: 4
Published: about 7 years ago
10.1186/s12967-018-1755-5
Serum protein signature of coronary artery disease in type 2 diabetes mellitus
Cited by: 28
Author(s): Ramu Adela, Podduturu Naveen Chander Reddy, Tarini Shankar Ghosh, Suruchi Aggarwal, Amit Kumar Yadav, Bhabatosh Das, Sanjay K. Banerjee
Software Mentions: 4
Published: almost 6 years ago
10.1371/journal.pone.0221855
Preferences and perceptions of the recreational spearfishery of the Great Barrier Reef
Cited by: 5
Author(s): Thea E. Bradford, Kennedy Wolfe, Peter J. Mumby
Software Mentions: 4
Published: about 5 years ago
10.3389/fmicb.2017.02099
Cyanobacteria and Alphaproteobacteria May Facilitate Cooperative Interactions in Niche Communities
Cited by: 32
Author(s): Marc W. Van Goethem, Thulani P. Makhalanyane, Don A. Cowan, Ángel Valverde
Software Mentions: 4
Published: about 7 years ago
10.1002/ece3.6826
Are native and non‐native pollinator friendly plants equally valuable for native wild bee communities?
Cited by: 31
Author(s): Nicola Seitz, Dennis vanEngelsdorp, Sara D. Leonhardt
Software Mentions: 4
Published: about 4 years ago
10.1128/mSphere.00226-16
Microbial Community Patterns Associated with Automated Teller Machine Keypads in New York City
Cited by: 22
Author(s): Holly M. Bik, Julia M. Maritz, Albert Luong, Hakdong Shin, Maria Gloria Domínguez-Bello, Jane M. Carlton
Software Mentions: 4
Published: almost 8 years ago
10.3389/fpls.2021.640789
Coupling Between the Responses of Plants, Soil, and Microorganisms Following Grazing Exclusion in an Overgrazed Grassland
Cited by: 13
Author(s): Zhen Wang, Xiliang Li, Baoming Ji, P.C. Struik, Ke Jin, Shiming Tang
Software Mentions: 4
Published: over 3 years ago
10.7717/peerj.10231
Comparing sediment DNA extraction methods for assessing organic enrichment associated with marine aquaculture
Cited by: 22
Author(s): John K. Pearman, Nigel Keeley, Susanna A. Wood, Olivier Laroche, Anastasija Zaiko, Georgia Thomson‐Laing, Laura Biessy, Javier Atalah, Xavier Pochon
Software Mentions: 4
Published: about 4 years ago
10.1128/mSphere.00560-17
Systematic Bias Introduced by Genomic DNA Template Dilution in 16S rRNA Gene-Targeted Microbiota Profiling in Human Stool Homogenates
Cited by: 17
Author(s): Francesco Multinu, Sean C. Harrington, Jun Chen, Patricio Jeraldo, Stephen Johnson, Nicholas Chia, Marina Walther-Antonio
Software Mentions: 4
Published: over 6 years ago
10.1128/mSphere.00332-18
Tongue Microbiota and Oral Health Status in Community-Dwelling Elderly Adults
Cited by: 66
Author(s): Mikari Asakawa, Toru Takeshita, Michiko Furuta, Shinya Kageyama, Kenji Takeuchi, Jun Hata, Toshiharu Ninomiya, Yoshihisa Yamashita
Software Mentions: 4
Published: about 6 years ago
10.1002/ece3.6811
Differences in rhizosphere microbial communities between native and non‐native <i>Phragmites australis</i> may depend on stand density
Cited by: 14
Author(s): Wesley A. Bickford, Donald R. Zak, Kurt P. Kowalski, Deborah E. Goldberg
Software Mentions: 4
Published: about 4 years ago
10.3389/fmicb.2020.01979
Genomic Comparison and Spatial Distribution of Different Synechococcus Phylotypes in the Black Sea
Cited by: 11
Author(s): Andrea Di Cesare, Nina Dzhembekova, Pedro J. Cabello‐Yeves, Ester M. Eckert, Violeta Slabakova, Nataliya Slabakova, Elisaveta Peneva, Roberto Bertoni, Gianluca Corno, Michaela M. Salcher, Lyudmila Kamburska, Filippo Bertoni, Francisco Rodrı́guez-Valera, Snejana Moncheva, Cristiana Callieri
Software Mentions: 4
Published: over 4 years ago
10.3389/fpls.2020.00993
Plant Microbiomes: Do Different Preservation Approaches and Primer Sets Alter Our Capacity to Assess Microbial Diversity and Community Composition?
Cited by: 14
Author(s): Zhiguang Qiu, Juntao Wang, Manuel Delgado‐Baquerizo, Pankaj Trivedi, Eleonora Egidi, Yi-Min Chen, Haiyang Zhang, Brajesh K. Singh
Software Mentions: 4
Published: over 4 years ago
10.1128/mSphere.00382-18
The Cloacal Microbiome of Five Wild Duck Species Varies by Species and Influenza A Virus Infection Status
Cited by: 22
Author(s): Sarah M. Hird, Holly H. Ganz, Jonathan A. Eisen, Walter M. Boyce
Software Mentions: 4
Published: about 6 years ago
10.1128/mSphere.00626-18
Decreased Snow Cover Stimulates Under-Ice Primary Producers but Impairs Methanotrophic Capacity
Cited by: 15
Author(s): Sarahi L. Garcia, Anna J. Székely, Christoffer Bergvall, Martha Schattenhofer, Sari Peura
Software Mentions: 4
Published: over 5 years ago
10.3389/fpls.2018.00902
Functional Microbial Features Driving Community Assembly During Seed Germination and Emergence
Cited by: 74
Author(s): Gloria Torres-Cortés, Sophie Bonneau, Olivier Bouchez, Clémence Genthon, Martial Briand, Marie‐Agnès Jacques, Matthieu Barret
Software Mentions: 4
Published: over 6 years ago
10.1128/mSphere.00730-19
Gut Microbiomes of the Eastern Oyster ( <i>Crassostrea virginica</i> ) and the Blue Mussel ( <i>Mytilus edulis</i> ): Temporal Variation and the Influence of Marine Aggregate-Associated Microbial Communities
Cited by: 43
Author(s): Melissa L. Pierce, J. Evan Ward
Software Mentions: 4
Published: almost 5 years ago
10.1080/20002297.2019.1633194
Bacterial biofilm composition in healthy subjects with and without caries experience.
Cited by: 37
Author(s): Kyrill Schoilew, Helena Ueffing, Alexander H. Dalpke, Björn Wolff, Cornelia Frese, Diana Wolff, Sébastien Boutin
Software Mentions: 4
Published: almost 6 years ago
10.1371/journal.pone.0237397
Spatial heterogeneity of coral reef benthic communities in Kenya
Cited by: 5
Author(s): Juliet Karisa, David Obura, Chaolun Allen Chen
Software Mentions: 4
Published: about 4 years ago
10.3389/fpls.2018.01526
Responses of the Endophytic Bacterial Communities of Juncus acutus to Pollution With Metals, Emerging Organic Pollutants and to Bioaugmentation With Indigenous Strains
Cited by: 32
Author(s): Evdokia Syranidou, Sofie Thijs, Marina Avramidou, Nele Weyens, Danae Venieri, Isabel Pintelon, Jaco Vangronsveld, Nicolas Kalogerakis
Software Mentions: 4
Published: about 6 years ago
10.7717/peerj.2571
The single-species metagenome: subtyping<i>Staphylococcus aureus</i>core genome sequences from shotgun metagenomic data
Cited by: 8
Author(s): Sandeep J. Joseph, Ben Li, Robert A. Petit, Zhaohui S. Qin, Lyndsey A. Darrow, Timothy D. Read
Software Mentions: 4
Published: about 8 years ago