cran: OpenCL | Projects | Ecosyste.ms: Papers

10.3389/fninf.2018.00068

Code Generation in Computational Neuroscience: A Review of Tools and Techniques
Cited by: 27
Author(s): Inga Blundell, Romain Brette, Thomas A. Cleland, Thomas G. Close, Daniel Coca, Andrew P. Davison, Sandra Diaz-Pier, Carlos Fernandez Musoles, Padraig Gleeson, Dan F. M. Goodman, Michael L. Hines, Michael Hopkins, Pramod Kumbhar, David Lester, Bóris Marin, Abigail Morrison, Eric Müller, Thomas Nowotny, Alexander Peyser, Dimitri Plotnikov, Paul Richmond, Andrew Rowley, Bernhard Rumpe, Marcel Stimberg, Alan B. Stokes, Adam Tomkins, Guido Trensch, Michael Woodman, Jochen Martin Eppler
Software Mentions: 16
Published: about 6 years ago

10.1186/s12868-017-0372-1

26th Annual Computational Neuroscience Meeting (CNS*2017): Part 3
Cited by: 5
Author(s): Adam J. H. Newton, Alexandra H Seidenstein, Robert A. McDougal, Alberto Pérez-Cervera, Gemma Huguet, Tere M. Seara, Caroline Haimerl, David Angulo-García, Alessandro Torcini, Rosa Cossart, Arnaud Malvache, K. Skiker, Mounir Maouene, Gianmarco Ragognetti, Letizia Lorusso, Andrea Viggiano, Angelo Marcelli, Rosa Senatore, Antonio Parziale, Sebastiano Stramaglia, M. Pellicoro, Lucia Angelini, Enrico Amico, Hannelore Aerts, Jesús M. Cortés, Steven Laureys, Daniele Marinazzo, Iege Bassez, Luca Faes, Hannes Almgren, Adeel Razi, Frederik Van de Steen, Ruth M. Krebs, Hannelore Aerts, Lida Kanari, Paweł Dłotko, Martina Scolamiero, Ran Levi, Julian C. Shillcock, Christiaan Pj de Kock, Katharina Heß, Henry Markram, Cheng Ly, Gary Marsat, Tom Gillespie, Malin Sandström, Mathew Abrams, Jeffrey S. Grethe, Maryann E. Martone, Robin De Gernier, Sergio Solinas, Christian Rössert, Marc Haelterman, Serge Massar, Valentina Pasquale, Vito Paolo Pastore, Sergio Martinoia, Paolo Massobrio, Cristiano Capone, Núria Tort-Colet, María V. Sánchez-Vives, Maurizio Mattia, Ali Almasi, Shaun L. Cloherty, David B. Grayden, Yan T. Wong, M. Ibbotson, Hamish Meffin, Luke Y. Prince, Krasimira Tsaneva-Atanasova, Jack R. Mellor, Annalisa Mazzoni, Manuela Rosa, J. Carpaneto, Luigi Romito, Alberto Priori, Silvestro Micera, Rosanna Migliore, Carmen Alina Lupaşcu, Francesco Franchina, Luca Bologna, Armando Romani, Sára Sáray, Werner Van Geit, Szabolcs Káli, Alex Thomson, Audrey Mercer, Sigrun Lange, Joanne Falck, Eilif Müller, Felix Schürmann, Dmitry Todorov, Robert Capps, William Barnett, Yaroslav I. Molkov, Federico Devalle, Diego Pazó, Ernest Montbrió, Gabriela Mochol, Habiba Azab, Benjamin Y. Hayden, Rubén Moreno‐Bote, Pragathi Priyadharsini Balasubramani, Srinivasa Chakravarthy, Vignayanandam Ravindernath Muddapu, Medorian D. Gheorghiu, Bartul Mimica, Jonathan Withlock, Raul C. Mureșan, Jennifer L. Zick, Kelsey Schultz, Rachael K. Blackman, Matthew V. Chafee, Theoden I. Netoff, Nicholas Roberts, Vivek Nagaraj, Andrew Lamperski, Logan L. Grado, Matthew D. Johnson, David Darrow, Davide Lonardoni, Hayder Amin, Stefano Di Marco, Alessandro Maccione, Luca Berdondini, Thierry Nieus, Marcel Stimberg, Dan F. M. Goodman, Thomas Nowotny, Veronika Koren, Valentin Dragoi, Klaus Obermayer, Samy Castro, Mariano Fernández, Wael El-Deredy, Ke Xu, Jean P. Maidana, Patricio Orio, Wei‐Liang Chen, Iain Hepburn, Francesco Casalegno, Adrien Devresse, A. G. Ovcharenko, Fernando Pereira, Fabien Delalondre, Erik De Schutter, Peter Bratby, Andrew R. Gallimore, Guido Klingbeil, Criseida Zamora, Yunliang Zang, Patrick Crotty, Eric Palmerduca, Alberto Antonietti, Claudia Casellato, Csaba Erö, Egidio D’Angelo, Marc‐Oliver Gewaltig, Alessandra Pedrocchi, Ilja Bytschok, Dominik Dold, Johannes Schemmel, K. Meier, Mihai A. Petrovici, Hui-An Shen, Simone Carlo Surace, Jean-Pascal Pfister, Baptiste Lefebvre, Olivier Marre, Pierre Yger, Athanasia Papoutsi, Jiyoung Park, Ryan T. Ash, Stelios M. Smirnakis, Panayiota Poirazi, Richard A. Felix, Alexander G. Dimitrov, Christine V. Portfors, Silvia Daun, Tibor Tóth, Joanna Jędrzejewska‐Szmek, Nadine Kabbani, Kim T. Blackwel, Bahar Moezzi, Natalie Schaworonkow, Lukas Plogmacher, Mitchell R. Goldsworthy, Brenton Hordacre, Mark D. McDonnell, Nicolangelo Iannella, Michael C. Ridding, Jochen Triesch, Reinoud Maex, Karen Safaryan, Volker Steuber, Rongxiang Tang, Yi‐Yuan Tang, Darya V. Verveyko, Alexey Brazhe, Andrey Yu. Verisokin, Dmitry E. Postnov, Cengiz Günay, Gabriella Panuccio, Michèle Giugliano, Astrid A. Prinz, Pablo Varona, M. I. Rabinovich, Jack E. Denham, Thomas Ranner, Netta Cohen, Maria Reva, Nelson Rebola, Tekla Kirizs, Zoltán Nusser, David A. DiGregorio, Eirini Mavritsaki, Panos Rentzelas, Nikul H. Ukani, Adam Tomkins, Chung-Heng Yeh, Wesley Bruning, Allison L. Fenichel, Yiyin Zhou, Yu-Chi Huang, Dorian Florescu, Carlos L. Ortiz, Paul Richmond, Chung-Chuan Lo, Daniel Coca, Ann‐Shyn Chiang, Aurel A. Lazar, Jennifer Creaser, Congping Lin, Peter Ashwin, Jon T. Brown, Thomas Ridler, Daniel Levenstein, Brendon O. Watson, György Buzsáki, John Rinzel, Rodica Curtu, Anh Trung Nguyen, Sahand Assadzadeh, P. A. Robinson, Paula Sanz‐Leon, Caroline Garcia Forlim, Lírio Onofre Baptista de Almeida, Reynaldo D. Pinto, Francisco B. Rodríguez, Ángel Lareo, Aarón Montero, Thiago Mosqueiro, Ramón Huerta, Vinicio Changoluisa, Vinícius Lima Cordeiro, Cesar Ceballos, Nilton L. Kamiji, Antonio Roque, William W. Lytton, Andrew T. Knox, Joshua J. C. Rosenthal, Svitlana Popovych, Liqing Liu, Bin A. Wang, Christian Grefkes, Gereon R. Fink, Nils Rosjat, Abraham Perez-Trujillo, Andrés Espinal, Marco Aurelio Sotelo-Figueroa, Iván Cruz-Aceves, Horacio Rostro-González, Martin Zapotocky, Martina Hoskovcová, J Kopecká, Olga Ulmanová, Evžen Růžička, Matthias Gärtner, Sevil Duvarci, Jochen Roeper, Gerd‐Helge Schneider, Štefan Albert, Katharina Schmack, Michiel W. H. Remme, Susanne Schreiber, Michele Migliore, Stefano Maximiliano Antonel, Jean-Denis Courcol, Sami Utku Çelikok, Eva M. Navarro-López, Neslihan Serap Şengör, Rahmi Elibol, Mustafa Y. Özdemir, Tianyi Li, Angelo Arleo, Denis Sheynikhovich, Akihiro Nakamura, Masanori Shimono, Youngjo Song, Sol Park, Ilhwan Choi, Jaeseung Jeong, Hee‐Sup Shin, Sadra Sadeh, Padraig Gleeson, R. Angus Silver, Alexandra P. Chatzikalymniou, Frances K. Skinner, Francisco B. Rodríguez, Roberto C. Sotero, Loreen Hertäg, Owen Mackwood, Henning Sprekeler, Steffen Puhlmann, Simon Weber, David Higgins, Laura Naumann, Ramakrisnan Iyer, Ştefan Mihalaş, Valentina Ticcinelli, Tomislav Stankovski, Peter V. E. McClintock, Aneta Stefanovska, Predrag Janjić, Dimitar Solev, Gerald Seifert, Ljupčo Kocarev, Christian Steinhäuser, Mehrdad Salmasi, Stefan Glasauer, Martin B. Stemmler, Danke Zhang, Chi Zhang, Armen Stepanyants, Julia Goncharenko, Lieke Kros, Neil Davey, Chris I. De Zeeuw, Freek E. Hoebeek, Ankur Sinha, Roderick Adams, Michael Schmuker, Maria Psarrou, Maria J. Schilstra, Benjamin Torben‐Nielsen, Christoph Metzner, Achim Schweikard, Tuomo Mäki‐Marttunen, Bartosz Zurowski, Daniele Marinazzo, Luca Faes, Sebastiano Stramaglia, H Jordan, Simon M. Stringer, Elżbieta Gajewska-Dendek, Piotr Suffczyński, Nicoladie D. Tam, George Zouridakis, Luca Pollonini, Mojtaba Madadi Asl, Alireza Valizadeh, Peter A. Tass, Andreas Nold, Wei Fan, Sara Konrad, Heiko Endle, Johannes Vogt, Tatjana Tchumatchenko, Juliane Herpich, Christian Tetzlaff, Jannik Luboeinski, Timo Nachstedt, Manuel Ciba, Andreas Bahmer, Christiane Thielemann, Eric S. Kuebler, Joseph S. Tauskela, Jean-Philippe Thivierge, Rembrandt Bakker, María García‐Amado, Marian Evangelio, Francisco Clascá, Paul Tiesinga, Christopher L. Buckley, Taro Toyoizumi, Alexis Dubreuil, Rémi Monasson, Alessandro Treves, Davide Spalla, Sophie Rosay, Florence I. Kleberg, Willy Wong, Bruno de Oliveira Floriano, Toshihiko Matsuo, Tetsuya Uchida, D. Dibenedetto, Kâmil Uludağ, Abdorreza Goodarzinick, Maximilian Schmidt, Claus C. Hilgetag, Markus Diesmann, Sacha J. van Albada, Michael Fauth, Mark C. W. van Rossum, Manuel Reyes-Sánchez, Rodrigo Amaducci, Carlos Múñiz, Irene Elices, David Arroyo, Rafael Levi, Ben Cohen, Carson C. Chow, Shashaank Vattikuti, Elena Bertolotti, Raffaella Burioni, Matteo di Volo, A. Vezzani, Bayar Menzat, Tim P. Vogels, Nobuhiko Wagatsuma, Susmita Saha, Reena Kapoor, Robert R. Kerr, John Wagner, Luis C. G. del Molino, Guangyu Robert Yang, Jorge F. Mejías, Xiaojing Wang, Hanbing Song, Joseph W. Goodliffe, Jennifer I. Luebke, Christina M. Weaver, John Thomas, Nishant Sinha, Nikhita Shaju, Tomasz Maszczyk, Jing Jin, Sydney S. Cash, Justin Dauwels, M. Brandon Westover, Maryam Karimian, Michelle Moerel, Peter De Weerd, Thomas Burwick, Ronald L. Westra, Romesh Abeysuriya, Jonathan Hadida, Stamatios N. Sotiropoulos, Saâd Jbabdi, Mark W. Woolrich, Chama Bensmail, Borys Wróbel, Xiaolong Zhou, Zilong Ji, Xiao Liu, Xin Yan, Si Wu, Wang Xiao, Mingsha Zhang, Netanel Ofer, Orit Shefi, Gur Yaari, Ted Carnevale, Amit Majumdar, Subhashini Sivagnanam, Kenneth Yoshimoto, Elena Y. Smirnova, Dmitry V. Amakhin, Sergey L. Malkin, Aleksey V. Zaitsev, Anton V. Chizhov, Margarita Zaleshina, Alexander Zaleshin, Victor J. Barranca, George Zhu, Quinton M. Skilling, Daniel Maruyama, Nicolette Ognjanovski, Sara J. Aton, Michal Zochowski, Jiaxing Wu, Sara J. Aton, Scott Rich, Victoria Booth, Maral Budak, Salvador Dura‐Bernal, Samuel A. Neymotin, Benjamin A. Suter, Gordon M. Shepherd, Melvin Felton, Alfred B. Yu, David L. Boothe, Kelvin S. Oie, Piotr J. Franaszczuk, Sergey A. Shuvaev, Batuhan Başerdem, Anthony M. Zador, Alexei A. Koulakov, Víctor J. López‐Madrona, Ernesto Pereda, Claudio R. Mirasso, Santiago Canals, Stefano Masoli, Udaya Bhaskar Rongala, Anton Spanne, Henrik Jörntell, Calogero Maria Oddo, A. Vartanov, Anastasia Neklyudova, S. Kozlovskiy, A. Kiselnikov, J. Marakshina, Maria Teleńczuk, Bartosz Teleńczuk, Alain Destexhe, Paula T. Kuokkanen, Anna Kraemer, Thomas McColgan, Catherine Carr, Richard Kempter
Software Mentions: 12
Published: over 7 years ago

10.1007/s11831-017-9244-1

FEMPAR: An Object-Oriented Parallel Finite Element Framework
Cited by: 38
Author(s): Santiago Badia, Alberto F. Martı́n, Javier Príncipe
Software Mentions: 9
Published: about 7 years ago

10.3389/fninf.2015.00019

ANNarchy: a code generation approach to neural simulations on parallel hardware
Cited by: 65
Author(s): Julien Vitay, Helge Ülo Dinkelbach, Fred H. Hamker
Software Mentions: 9
Published: over 9 years ago

10.3389/fninf.2021.659005

PyGeNN: A Python Library for GPU-Enhanced Neural Networks
Cited by: 23
Author(s): James C. Knight, A. B. Комиссаров, Thomas Nowotny
Software Mentions: 8
Published: over 3 years ago

10.1186/s13321-019-0332-0

Chemoinformatics and structural bioinformatics in OCaml
Cited by: 5
Author(s): Francois Berenger, Kam Y. J. Zhang, Yoshihiro Yamanishi
Software Mentions: 7
Published: almost 6 years ago

10.1186/1471-2105-14-S1-S1

Visualization of protein interaction networks: problems and solutions
Cited by: 70
Author(s): Giuseppe Agapito, Pietro Hiram Guzzi, Mario Cannataro
Software Mentions: 7
Published: almost 12 years ago

10.1007/s12559-020-09773-x

Deep Learning in Mining Biological Data
Cited by: 197
Author(s): Mufti Mahmud, M. Shamim Kaiser, TM McGinnity, Amir Hussain
Software Mentions: 7
Published: almost 4 years ago

10.1371/journal.pcbi.1000589

A Quick Guide for Developing Effective Bioinformatics Programming Skills
Cited by: 45
Author(s): Joel T. Dudley, Atul J. Butte
Software Mentions: 7
Published: almost 15 years ago

10.1186/s12868-017-0371-2

26th Annual Computational Neuroscience Meeting (CNS*2017): Part 2
Cited by: 7
Author(s): Leonid L. Rubchinsky, Sungwoo Ahn, Wouter Klijn, Ben Cumming, Stuart Yates, Vasileios Karakasis, Alexander Peyser, Marmaduke Woodman, Sandra Diaz-Pier, James Deraeve, Eliana Vassena, William H. Alexander, David Beeman, Paweł Kudela, Dana Boatman-Reich, William S. Anderson, Niceto R. Luque, Francisco Naveros, Richard R. Carrillo, Eduardo Ros, Angelo Arleo, Jacob Huth, Koki Ichinose, Jihoon Park, Yuji Kawai, Junko Suzuki, Hiroki Mori, Minoru Asada, Sorinel A. Oprisan, Austin I. Dave, Tahereh Babaie, Peter Robinson, Alejandro Tabas, Martin Andermann, André Rupp, Emili Balaguer‐Ballester, Henrik Lindén, Rasmus Kordt Christensen, Mari Nakamura, Tania Rinaldi Barkat, Zach Tosi, John M. Beggs, Davide Lonardoni, Fabio Boi, Stefano Di Marco, Alessandro Maccione, Luca Berdondini, Joanna Jędrzejewska‐Szmek, Daniel B. Dormán, Kim T. Blackwell, Christoph Bauermeister, Hanna Keren, Jochen Braun, João V. Dornas, Eirini Mavritsaki, Silvio Aldrovandi, Emma K. Bridger, Sukbin Lim, Nicolas Brunel, Anatoly Buchin, Clifford Charles Kerr, Anton V. Chizhov, Gilles Huberfeld, Richard Miles, Boris Gutkin, Martin Spencer, Hamish Meffin, David B. Grayden, Anthony N. Burkitt, Catherine E. Davey, Liangyu Tao, Vineet Tiruvadi, Rehman Ali, Helen S. Mayberg, Robert J. Butera, Cengiz Günay, Damon G. Lamb, Ronald L. Calabrese, Anca Doloc-Mihu, Víctor J. López‐Madrona, Fernanda S. Matias, Ernesto Pereda, Claudio R. Mirasso, Santiago Canals, Alice Geminiani, Alessandra Pedrocchi, Egidio D’Angelo, Claudia Casellato, Ankur Chauhan, Karthik Soman, V. Srinivasa Chakravarthy, Vignayanandam Ravindernath Muddapu, Chao-Chun Chuang, Nan-yow Chen, Mehdi Bayati, Jan Melchior, Laurenz Wiskott, Amir Azizi, Kamran Diba, Sen Cheng, Elena Y. Smirnova, E. G. Yakimova, Chi-Tin Shih, Dorian Florescu, Daniel Coca, Julie Courtiol, Viktor K. Jirsa, R. J. M. Covolan, Bartosz Teleńczuk, Richard Kempter, Gabriel Curio, Alain Destexhe, Jessica Parker, Alexander N. Klishko, Boris I. Prilutsky, Gennady Cymbalyuk, Felix Franke, Andreas Hierlemann, Rava Azeredo da Silveira, Stefano Casali, Stefano Masoli, Martina Francesca Rizza, Yinming Sun, Willy Wong, Faranak Farzan, Daniel M. Blumberger, Zafiris J. Daskalakis, Svitlana Popovych, Shivakumar Viswanathan, Nils Rosjat, Christian Grefkes, Silvia Daun, Damiano Gentiletti, Piotr Suffczyński, Vadym Gnatkovski, Marco de Curtis, Hyeonsu Lee, Se‐Bum Paik, Woochul Choi, Jaeson Jang, Youngjin Park, Jun Song, Min Song, Vicente Pallarés, Matthieu Gilson, Simone Kühn, Andrea Insabato, Gustavo Deco, Katharina Glomb, Adrián Ponce‐Alvarez, Petra Ritter, Adrià Tauste Campo, Alexander Thiele, F. Deeba, P. A. Robinson, Sacha J. van Albada, Andrew Rowley, Michael Hopkins, Maximilian Schmidt, Alan B. Stokes, David Lester, Steve Furber, Markus Diesmann, Alessandro Barri, Martin T. Wiechert, David A. DiGregorio, Alexander G. Dimitrov, Catalina Vich, Rune W. Berg, Antoni Guillamón, Susanne Ditlevsen, Romain D. Cazé, Benoît Girard, Stéphane Doncieux, Nicolas Doyon, Frank Boahen, Patrick Desrosiers, Edward Laurence, Louis J. Dubé, Eleonora Russo, Daniel Durstewitz, Dominik Schmidt, Tuomo Mäki‐Marttunen, Florian Krull, Francesco Bettella, Christoph Metzner, Anna Devor, Srdjan Djurovic, Anders M. Dale, Ole A. Andreassen, Gaute T. Einevoll, Solveig Næss, Torbjørn V. Ness, Geir Halnes, Eric Halgren, Klas H. Pettersen, Marte J. Sætra, Espen Hagen, Alina Schiffer, Axel Grzymisch, Malte Persike, Udo Ernst, Daniel Harnack, Nergis Tömen, Stefano Zucca, Valentina Pasquale, Giuseppe Pica, Manuel Molano-Mazón, Michela Chiappalone, Stefano Panzeri, Tommaso Fellin, Kelvin S. Oie, David L. Boothe, Joshua C. Crone, Alfred B. Yu, Melvin Felton, Isma Zulfiqar, Michelle Moerel, Peter De Weerd, Elia Formisano, Piotr J. Franaszczuk, Roland Diggelmann, Michele Fiscella, Domenico Guarino, Ján Antolík, Andrew Davison, Yves Frégnac, Benjamin Xavier Etienne, Flavio Fröhlich, Jérémie Lefebvre, Encarni Marcos, Maurizio Mattia, Aldo Genovesio, Leonid Fedorov, Tjeerd M. H. Dijkstra, Louisa Sting, Howard S. Hock, Martin A. Giese, Laure Buhry, Clément Langlet, Francesco Giovannini, Christophe Verbist, Stefano Salvadè, Michèle Giugliano, James A. Henderson, Hendrik Wernecke, Bulcsú Sándor, Claudius Gros, Nicole Voges, Paulina Dabrovska, Alexa Riehle, Thomas Brochier, Sonja Grün, Y. T. Gu, Pulin Gong, Grégory Dumont, Nikita A. Novikov, Parul Tewatia, Olivia Eriksson, Andrei Kramer, João Pedro Gonçalves dos Santos, Alexandra Jauhiainen, Jeanette Hellgren Kotaleski, Jovana J. Belić, Arvind Kumar, Masanori Shimono, Naomichi Hatano, Subutai Ahmad, Yuwei Cui, Jeff Hawkins, Johanna Senk, Karolína Korvasová, Tom Tetzlaff, Moritz Helias, Tobias Kühn, Michael Denker, PierGianLuca Porta Mana, David Dahmen, Jannis Schuecker, Sven Goedeke, Christian Keup, Katja Heuer, Rembrandt Bakker, Paul Tiesinga, Roberto Toro, Wei Qin, Alex E. Hadjinicolaou, M. Ibbotson, Tatiana Kameneva, William W. Lytton, Lealem Mulugeta, Andrew Drach, Jerry G. Myers, Marc Horner, Rajanikanth Vadigepalli, Tina Morrison, Marlei Walton, Martin J. Steele, C. Anthony Hunt, Nicoladie D. Tam, Rodrigo Amaducci, Carlos Múñiz, Manuel Reyes-Sánchez, Francisco B. Rodríguez, Pablo Varona, Joseph T. Cronin, Matthias Hennig, Elisabetta Iavarone, Jane Yi, Ying Shi, Bas-Jan Zandt, Werner Van Geit, Christian Rössert, Henry Markram, Sean Hill, Christian O’Reilly, Rodrigo Perin, Huanxiang Lu, Alexander Bryson, Michal Hadrava, Jaroslav Hlinka, Ryosuke Hosaka, Mark Olenik, Conor Houghton, Nicolangelo Iannella, Thomas Lavstsen, Rebecca Kotsakidis, Jaymar Soriano, Takatomi Kubo, Takao Inoue, Hirotaka Kida, Toshitaka Yamakawa, Michiyasu Suzuki, Kazushi Ikeda, Samira Abbasi, Amber E. Hudson, Detlef H. Heck, Dieter Jaeger, Joel Lee, Skirmantas Janušonis, Maria Luisa Saggio, Andreas Spiegler, William C. Stacey, Christophe Bernard, Davide Lillo, Spase Petkoski, Mark Drakesmith, Derek K. Jones, Ali Sadegh Zadeh, C. Kambhampati, Jan Karbowski, Zeynep Gokcen Kaya, Yair Lakretz, Alessandro Treves, Lily W. Li, Joseph T. Lizier, Cliff C. Kerr, Timothée Masquelier, Saeed Reza Kheradpisheh, Hojeong Kim, Chang Sub Kim, J. Marakshina, A. Vartanov, Anastasia Neklyudova, S. Kozlovskiy, A. Kiselnikov, Kanako Taniguchi, Katsunori Kitano, Oliver Schmitt, Felix Leßmann, Sebastian Schwanke, Peter Eipert, Meinhardt Jennifer, Julia Beier, Kanar Kadir, Adrian Karnitzki, Linda Sellner, Ann-Christin Klünker, Lena Kuch, Frauke Ruß, Jörg Jenssen, Andreas Wree, Paula Sanz‐Leon, S. A. Knock, Shih-Cheng Chien, Burkhard Maeß, Thomas R. Knösche, Charles C.H. Cohen, Marko Popović, Jan Klooster, Maarten H. P. Kole, Erik A. Roberts, Nancy Kopell, Daniel Kepple, Hamza Giaffar, Dima Rinberg, Alex Koulakov, Caroline Garcia Forlim, Leonie Klock, Johanna Bächle, Laura Stoll, Patrick Giemsa, Marie Fuchs, Nikola Schoofs, Christiane Montag, Jürgen Gallinat, Ray X. Lee, Greg Stephens, Bernd Kühn, Luiz Tauffer, Philippe Isope, Katsuma Inoue, Yoshiyuki Ohmura, Shogo Yonekura, Yasuo Kuniyoshi, Hyun Jae Jang, Jeehyun Kwag, Marc de Kamps, Yi Ming Lai, Filipa Santos, K. P. Lam, Péter András, Julia P. Imperatore, Jessica Helms, Tamás Tompa, Antonieta Lavín, Felicity H Inkpen, Michael C. Ashby, Nathan F. Lepora, Aaron R. Shifman, John E. Lewis, Zhong Zhang, Yeqian Feng, Christian Tetzlaff, Tomas Kulvičius, Yinyun Li, Rodrigo F. O. Pena, Davide Bernardi, Antonio Roque, Benjamin Lindner, Sebastian Vellmer, Aušra Saudargienė, Tiina Maninen, Riikka Havela, Marja-Leena Linne, Arthur S. Powanwe, André Longtin, Jesús Garrido, Joe W. Graham, Salvador Dura‐Bernal, Sergio Angulo, Samuel A. Neymotin, Srdjan D. Antic
Software Mentions: 7
Published: over 7 years ago

10.1371/journal.pone.0190279

pyPaSWAS: Python-based multi-core CPU and GPU sequence alignment
Cited by: 12
Author(s): Sven Warris, N. Roshan N. Timal, Marcel Kempenaar, Arne M. Poortinga, Henri van de Geest, Ana Lucia Vărbănescu, Jan-Peter Nap
Software Mentions: 6
Published: almost 7 years ago

10.3389/fnins.2021.667011

Benchmarking Highly Parallel Hardware for Spiking Neural Networks in Robotics
Cited by: 5
Author(s): Lea Steffen, Robin Koch, Stefan Ulbrich, Sven Nitzsche, Arne Roennau, Rüdiger Dillmann
Software Mentions: 6
Published: over 3 years ago

10.3389/fphys.2015.00026

OpenCOR: a modular and interoperable approach to computational biology
Cited by: 71
Author(s): Alan Garny, Peter Hunter
Software Mentions: 6
Published: almost 10 years ago

10.1371/journal.pone.0250306

Cross-platform programming model for many-core lattice Boltzmann simulations
Cited by: 16
Author(s): Jonas Lätt, Christophe Coreixas, Joël Bény
Software Mentions: 5
Published: over 3 years ago

10.1371/journal.pcbi.1005209

BIDS apps: Improving ease of use, accessibility, and reproducibility of neuroimaging data analysis methods
Cited by: 203
Author(s): Krzysztof J. Gorgolewski, Fidel Alfaro-Almagro, Tibor Auer, Pierre Bellec, Mihai Capotă, M. Mallar Chakravarty, Nathan W. Churchill, Alexander L. Cohen, R. Cameron Craddock, Gabriel A. Devenyi, Anders Eklund, Oscar Estéban, Guillaume Flandin, Samik Ghosh, J. Swaroop Guntupalli, Mark Jenkinson, Anisha Keshavan, Gregory Kiar, Franziskus Liem, Pradeep Reddy Raamana, David Raffelt, Christopher J. Steele, Pierre-Olivier Quirion, Robert E. Smith, Stephen C. Strother, Gaël Varoquaux, Yida Wang, Tal Yarkoni, Russell A. Poldrack
Software Mentions: 5
Published: over 7 years ago

10.3389/fninf.2014.00024

BROCCOLI: Software for fast fMRI analysis on many-core CPUs and GPUs
Cited by: 67
Author(s): Anders Eklund, Paul Dufort, Mattias Villani, Stephen M. LaConte
Software Mentions: 5
Published: over 10 years ago

10.1371/journal.pone.0146581

Neurokernel: An Open Source Platform for Emulating the Fruit Fly Brain
Cited by: 21
Author(s): Lev E. Givon, Aurel A. Lazar
Software Mentions: 5
Published: almost 9 years ago

10.1107/S2059798318002425

ISOLDE: a physically realistic environment for model building into low-resolution electron-density maps
Cited by: 933
Author(s): Tristan I. Croll
Software Mentions: 5
Published: over 6 years ago

10.3389/fnins.2018.00941

GPUs Outperform Current HPC and Neuromorphic Solutions in Terms of Speed and Energy When Simulating a Highly-Connected Cortical Model
Cited by: 55
Author(s): James C. Knight, Thomas Nowotny
Software Mentions: 5
Published: almost 6 years ago

10.1155/2014/253013

Polyglot Programming in Applications Used for Genetic Data Analysis
Cited by: 5
Author(s): Robert Nowak
Software Mentions: 4
Published: almost 11 years ago

10.1371/journal.pcbi.1005991

PhysiCell: An open source physics-based cell simulator for 3-D multicellular systems
Cited by: 280
Author(s): Ahmadreza Ghaffarizadeh, Randy Heiland, Samuel H. Friedman, Shannon M. Mumenthaler, Paul Macklin
Software Mentions: 4
Published: over 6 years ago

10.3389/fbioe.2015.00028

G-CNV: A GPU-Based Tool for Preparing Data to Detect CNVs with Read-Depth Methods
Cited by: 8
Author(s): Andrea Manconi, Elias Manca, Marco Moscatelli, Matteo Gnocchi, Alessandro Orro, Giuliano Armano, Luciano Milanesi
Software Mentions: 4
Published: over 9 years ago

10.1371/journal.pone.0208263

QTM: Computational package using MPI protocol for Quantum Trajectories Method
Cited by: 1
Author(s): Marek Sawerwain, Joanna Wiśniewska
Software Mentions: 4
Published: almost 6 years ago

10.1186/s13742-016-0114-9

Scalable linkage-disequilibrium-based selective sweep detection: a performance guide
Cited by: 15
Author(s): Nikolaos Alachiotis, Pavlos Pavlidis
Software Mentions: 4
Published: almost 9 years ago

10.3389/fninf.2014.00036

Integrating neuroinformatics tools in TheVirtualBrain
Cited by: 21
Author(s): Michael Woodman, Laurent Pézard, Lia Domide, S. A. Knock, Paula Sanz-Leon, Jochen Mersmann, Anthony R. McIntosh, Viktor K. Jirsa
Software Mentions: 4
Published: over 10 years ago

10.3389/fninf.2017.00033

Automatic Optimization of the Computation Graph in the Nengo Neural Network Simulator
Cited by: 3
Author(s): Jan Gosmann, Chris Eliasmith
Software Mentions: 4
Published: over 7 years ago

10.3389/fninf.2013.00048

Nengo: a Python tool for building large-scale functional brain models
Cited by: 300
Author(s): Trevor Bekolay, James Bergstra, Eric Hunsberger, Travis DeWolf, Terrence C. Stewart, Daniel Rasmussen, Xuan Choo, Aaron R. Voelker, Chris Eliasmith
Software Mentions: 4
Published: almost 11 years ago

10.1093/bib/bbw058

Graphics processing units in bioinformatics, computational biology and systems biology
Cited by: 53
Author(s): Marco S. Nobile, Paolo Cazzaniga, Andrea Tangherloni, Daniela Besozzi
Software Mentions: 4
Published: over 8 years ago

10.3389/fnins.2015.00380

Benchmarking neuromorphic systems with Nengo
Cited by: 0
Author(s): Trevor Bekolay, Terrence C. Stewart, Chris Eliasmith
Software Mentions: 4
Published: about 9 years ago

10.1371/journal.pone.0018539

Democratic Population Decisions Result in Robust Policy-Gradient Learning: A Parametric Study with GPU Simulations
Cited by: 13
Author(s): Paul Richmond, Lars Buesing, Michèle Giugliano, Eleni Vasilaki
Software Mentions: 4
Published: over 13 years ago

10.1371/journal.pone.0044000

GPU-FS-kNN: A Software Tool for Fast and Scalable kNN Computation Using GPUs
Cited by: 62
Author(s): Ahmed Shamsul Arefin, Carlos Riveros, Regina Berretta, Pablo Moscato
Software Mentions: 4
Published: about 12 years ago

10.7717/peerj.606

Massively parallel read mapping on GPUs with theq-group index and PEANUT
Cited by: 5
Author(s): Johannes Köster, Sven Rahmann
Software Mentions: 4
Published: about 10 years ago

10.1155/2018/2046269

Instant Feedback Rapid Prototyping for GPU-Accelerated Computation, Manipulation, and Visualization of Multidimensional Data
Cited by: 1
Author(s): Maximilian Malek, Christoph Wilhelm Sensen
Software Mentions: 4
Published: over 6 years ago

10.1186/s12859-015-0485-4

NMF-mGPU: non-negative matrix factorization on multi-GPU systems
Cited by: 44
Author(s): Edgardo Mejía-Roa, Daniel Tabas-Madrid, Javier Setoaín, Carlos Garcı́a, Francisco Tirado, Alberto Pascual-Montano
Software Mentions: 4
Published: over 9 years ago

10.3389/fninf.2017.00008

Efficient Computation of Functional Brain Networks: toward Real-Time Functional Connectivity
Cited by: 26
Author(s): Juan García-Prieto, Ricardo Bajo, Ernesto Pereda
Software Mentions: 4
Published: almost 8 years ago

10.1371/journal.pcbi.1005659

OpenMM 7: Rapid development of high performance algorithms for molecular dynamics
Cited by: 1,367
Author(s): Peter Eastman, Jason Swails, John D. Chodera, Robert T. McGibbon, Yulan Zhao, Kyle A. Beauchamp, Lee‐Ping Wang, Andrew C. Simmonett, Matthew P. Harrigan, Chaya Stern, Rafal Wiewiora, Bernard R. Brooks, Vijay S. Pande
Software Mentions: 4
Published: over 7 years ago

10.1371/journal.pone.0133660

GDSCalc: A Web-Based Application for Evaluating Discrete Graph Dynamical Systems
Cited by: 6
Author(s): Sherif H. Elmeligy Abdelhamid, Chris J. Kuhlman, Madhav V. Marathe, Henning S. Mortveit, S. S. Ravi
Software Mentions: 4
Published: about 9 years ago

10.1155/2014/134023

Managing, Analysing, and Integrating Big Data in Medical Bioinformatics: Open Problems and Future Perspectives
Cited by: 105
Author(s): Ivan Merelli, Horacio Pérez‐Sánchez, Sandra Gesing, Daniele D’Agostino
Software Mentions: 4
Published: almost 11 years ago

10.1038/s41598-017-13348-6

Microtome-integrated microscope system for high sensitivity tracking of in-resin fluorescence in blocks and ultrathin sections for correlative microscopy
Cited by: 5
Author(s): Nicolas Lemercier, Volker Middel, Didier Hentsch, Serge Taubert, Masanari Takamiya, Tanja Beil, Jean‐Luc Vonesch, Tilo Baumbach, Patrick Schultz, Claude Antony, Uwe Strähle
Software Mentions: 3
Published: about 7 years ago

10.1186/s12859-018-2510-x

High-throughput cancer hypothesis testing with an integrated PhysiCell-EMEWS workflow
Cited by: 54
Author(s): Jonathan Ozik, Nicholson Collier, Justin M. Wozniak, Charles M. Macal, Chase Cockrell, Samuel H. Friedman, Ahmadreza Ghaffarizadeh, Randy Heiland, Gary An, Paul Macklin
Software Mentions: 3
Published: almost 6 years ago

10.1038/s41598-019-46622-w

GPU-Accelerated GLRLM Algorithm for Feature Extraction of MRI
Cited by: 20
Author(s): Hanyu Zhang, Che Lun Hung, Geyong Min, Jhih Peng Guo, Meiyuan Liu, Xiaoye Hu
Software Mentions: 3
Published: over 5 years ago

10.1155/2017/8348671

High Performance Implementation of 3D Convolutional Neural Networks on a GPU
Cited by: 14
Author(s): Qiang Liu, Zelong Wang, Mei Wen, Chunyuan Zhang, Yijie Wang
Software Mentions: 3
Published: almost 8 years ago

10.1186/1471-2164-15-969

MaxSSmap: a GPU program for mapping divergent short reads to genomes with the maximum scoring subsequence
Cited by: 9
Author(s): Turki Turki, Usman Roshan
Software Mentions: 3
Published: almost 11 years ago

10.1186/s12864-019-6096-0

EVR: reconstruction of bacterial chromosome 3D structure models using error-vector resultant algorithm
Cited by: 12
Author(s): Kang-Jian Hua, Bin-Guang Ma
Software Mentions: 3
Published: about 5 years ago

10.1186/s13742-015-0045-x

Connectomics and new approaches for analyzing human brain functional connectivity
Cited by: 55
Author(s): R. Cameron Craddock, Rosalia L. Tungaraza, Michael P. Milham
Software Mentions: 3
Published: over 9 years ago

10.1038/s41598-019-47174-9

QuEST and High Performance Simulation of Quantum Computers
Cited by: 125
Author(s): Tyson Jones, Anna Brown, Ian J. Bush, Simon C. Benjamin
Software Mentions: 3
Published: over 5 years ago

10.3389/fnins.2015.00464

Closed-Loop Neuromorphic Benchmarks
Cited by: 15
Author(s): Terrence C. Stewart, Travis DeWolf, Ashley Kleinhans, Chris Eliasmith
Software Mentions: 3
Published: almost 9 years ago

10.1093/bioinformatics/btu098

fast_protein_cluster: parallel and optimized clustering of large-scale protein modeling data
Cited by: 14
Author(s): Ling Hong Hung, Ram Samudrala
Software Mentions: 3
Published: over 10 years ago

10.3389/fninf.2014.00017

Analyzing large-scale spiking neural data with HRLAnalysisâ„¢
Cited by: 3
Author(s): Corey M. Thibeault, Michael J. O’Brien, Narayan Srinivasa
Software Mentions: 3
Published: over 10 years ago

10.1371/journal.pone.0173496

Parallel group independent component analysis for massive fMRI data sets
Cited by: 6
Author(s): Shaojie Chen, Lei Huang, Huitong Qiu, Mary Beth Nebel, Stewart H. Mostofsky, James J. Pekar, Martin A. Lindquist, Ani Eloyan, Brian Caffo
Software Mentions: 3
Published: over 7 years ago

10.3389/fninf.2013.00036

Hardware-accelerated interactive data visualization for neuroscience in Python
Cited by: 33
Author(s): Cyrille Rossant, Kenneth D. Harris
Software Mentions: 3
Published: almost 12 years ago

10.1371/journal.pone.0180343

Bayesian Lasso and multinomial logistic regression on GPU
Cited by: 7
Author(s): Rok Češnovar, Erik Štrumbelj
Software Mentions: 3
Published: over 7 years ago

10.1155/2017/1278932

Empirical Comparison of Visualization Tools for Larger-Scale Network Analysis
Cited by: 39
Author(s): Georgios A. Pavlopoulos, David Páez-Espino, Nikos C. Kyrpides, Ioannis Iliopoulos
Software Mentions: 3
Published: over 7 years ago

10.3389/fgene.2013.00266

Discovering epistasis in large scale genetic association studies by exploiting graphics cards
Cited by: 5
Author(s): Gary K. Chen, Yunfei Guo
Software Mentions: 3
Published: almost 12 years ago

10.1371/journal.pone.0114145

A GPU-Based Implementation of the Firefly Algorithm for Variable Selection in Multivariate Calibration Problems
Cited by: 16
Author(s): Lauro Cássio Martins de Paula, Anderson S. Soares, Telma Woerle de Lima, Alexandre C. B. Delbem, Clarimar J. Coelho, Arlindo Rodrigues Galvão Filho
Software Mentions: 3
Published: almost 10 years ago

10.3390/e21100931

Parallel Implementation of Modeling of Fractional-Order State-Space Systems Using the Fixed-Step Euler Method
Cited by: 2
Author(s): Rafał Stanisławski, Kamil Kozioł
Software Mentions: 3
Published: about 5 years ago

10.1007/s11265-016-1185-7

FPGA-Based Soft-Core Processors for Image Processing Applications
Cited by: 15
Author(s): Moslem Amiri, Fahad Siddiqui, Colm Kelly, Roger Woods, Karen Rafferty, Burak Bardak
Software Mentions: 3
Published: about 8 years ago

10.1155/2011/843924

Mapping Iterative Medical Imaging Algorithm on Cell Accelerator
Cited by: 6
Author(s): Meilian Xu, Parimala Thulasiraman
Software Mentions: 3
Published: almost 14 years ago

10.1107/S1600577518010986

Sirepo: an open-source cloud-based software interface for X-ray source and optics simulations
Cited by: 12
Author(s): Maksim Rakitin, Paul Moeller, Robert Nagler, Boaz Nash, David L. Bruhwiler, D. Smalyuk, Mikhail Zhernenkov, Oleg Chubar
Software Mentions: 3
Published: about 6 years ago

10.3390/s19132981

Mapping Neural Networks to FPGA-Based IoT Devices for Ultra-Low Latency Processing
Cited by: 17
Author(s): Maciej Wielgosz, Michał Karwatowski
Software Mentions: 3
Published: over 5 years ago

10.3390/s21061987

Efficient Implementation of NIST LWC ESTATE Algorithm Using OpenCL and Web Assembly for Secure Communication in Edge Computing Environment
Cited by: 2
Author(s): BoSun Park, Seog Chung Seo
Software Mentions: 3
Published: over 3 years ago

10.1038/srep18854

GeNN: a code generation framework for accelerated brain simulations
Cited by: 109
Author(s): Esin Yavuz, James P. Turner, Thomas Nowotny
Software Mentions: 3
Published: almost 9 years ago

10.1186/s12859-019-3019-7

HH-suite3 for fast remote homology detection and deep protein annotation
Cited by: 602
Author(s): Martin Steinegger, Markus Meier, Milot Mirdita, Harald Vöhringer, Stephan J. Haunsberger, Johannes Söding
Software Mentions: 3
Published: about 5 years ago

10.1371/journal.pcbi.1008308

OpenAWSEM with Open3SPN2: A fast, flexible, and accessible framework for large-scale coarse-grained biomolecular simulations
Cited by: 31
Author(s): Wei Lu, Carlos Bueno, Nicholas P. Schafer, Joshua Moller, Shuang Jin, Xun Chen, Mingchen Chen, Xinyu Gu, Aram Davtyan, Juan J. de Pablo, Peter G. Wolynes
Software Mentions: 3
Published: over 3 years ago

10.3389/fgene.2016.00005

Comparison of Acceleration Techniques for Selected Low-Level Bioinformatics Operations
Cited by: 3
Author(s): Daniel Langenkämper, Tobias Jakobi, Dustin Feld, Lukas Jelonek, Alexander Goesmann, Tim Wilhelm Nattkemper
Software Mentions: 3
Published: over 8 years ago

10.3390/s21186050

A Novel Automate Python Edge-to-Edge: From Automated Generation on Cloud to User Application Deployment on Edge of Deep Neural Networks for Low Power IoT Systems FPGA-Based Acceleration
Cited by: 1
Author(s): Tarek Belabed, Vitor Ramos Gomes da Silva, Alexandre Quenon, Carlos Valderamma, Chokri Souani
Software Mentions: 3
Published: about 3 years ago

10.1098/rsos.170436

Accelerating adaptive inverse distance weighting interpolation algorithm on a graphics processing unit
Cited by: 19
Author(s): Gang Mei, Lina Xu, Nengxiong Xu
Software Mentions: 2
Published: about 7 years ago

10.1098/rsos.201784

Multithreaded two-pass connected components labelling and particle analysis in ImageJ
Cited by: 11
Author(s): Michael Doube
Software Mentions: 2
Published: over 3 years ago

10.1038/s41598-017-15313-9

Gpufit: An open-source toolkit for GPU-accelerated curve fitting
Cited by: 44
Author(s): Adrian Przybylski, Björn Thiel, Jan Keller‐Findeisen, Bernd Stock, Mark Bates
Software Mentions: 2
Published: almost 7 years ago

10.1186/s12859-017-1783-9

eccCL: parallelized GPU implementation of Ensemble Classifier Chains
Cited by: 2
Author(s): Mona Riemenschneider, Alexander Herbst, Ari Rasch, Sergei Gorlatch, Dominik Heider
Software Mentions: 2
Published: about 7 years ago

10.1117/1.JBO.23.1.010504

Scalable and massively parallel Monte Carlo photon transport simulations for heterogeneous computing platforms
Cited by: 117
Author(s): Liang Yu, Fanny Nina-Paravecino, David Kaeli, Qianqian Fang
Software Mentions: 2
Published: almost 7 years ago

10.1109/JBHI.2018.2796941

On the Accuracy and Scalability of Probabilistic Data Linkage Over the Brazilian 114 Million Cohort
Cited by: 27
Author(s): Robespierre Pita, Clícia Pinto, Samila Sena, Rosemeire Leovigildo Fiaccone, Leila Denise Alves Ferreira Amorim, Sandra Reis, Maurício L. Barreto, Spiros Denaxas, Marcos Ennes Barreto
Software Mentions: 2
Published: over 6 years ago

10.1107/S1600576715004306

The fast azimuthal integration Python library:pyFAI
Cited by: 475
Author(s): Giannis Ashiotis, Aurore Deschildre, Zahid Nawaz, Jonathan P. Wright, Dimitrios Karkoulis, F. Picca, Jérôme Kieffer
Software Mentions: 2
Published: over 9 years ago

10.1038/s41598-018-29275-z

Adaptive Genetic Algorithm for Optical Metasurfaces Design
Cited by: 147
Author(s): Samad Jafar‐Zanjani, Sandeep Inampudi, Hossein Mosallaei
Software Mentions: 2
Published: over 6 years ago

10.1007/s11517-015-1331-6

Dynamic CT perfusion image data compression for efficient parallel processing
Cited by: 5
Author(s): Renan Sales Barros, Sílvia D. Olabarriaga, Jordi Borst, Marianne A.A. van Walderveen, Jorrit S. Posthuma, Geert J. Streekstra, Marcel van Herk, Charles B. L. M. Majoie, Henk A. Marquering
Software Mentions: 2
Published: over 9 years ago

10.1063/1.4990387

Nonlinear statistical iterative reconstruction for propagation-based phase-contrast tomography
Cited by: 13
Author(s): Lorenz Hehn, Kaye S. Morgan, Pidassa Bidola, Wolfgang Noichl, Regine Gradl, Martin Dierolf, Peter B. Noël, Franz Pfeiffer
Software Mentions: 2
Published: almost 7 years ago

10.1534/g3.117.300103

Accelerating Wright–Fisher Forward Simulations on the Graphics Processing Unit
Cited by: 7
Author(s): David S. Lawrie
Software Mentions: 2
Published: about 7 years ago

10.1007/s40708-017-0071-9

Brain explorer for connectomic analysis
Cited by: 4
Author(s): Li Huang, Shiaofen Fang, Joey A. Contreras, John D. West, Shannon L. Risacher, Yan Wang, Olaf Sporns, Andrew J. Saykin, Joaquín Goñi, Li Shen
Software Mentions: 2
Published: about 7 years ago

10.3390/biom11010111

Derivatives of Tenuazonic Acid as Potential New Multi-Target Anti-Alzheimer’s Disease Agents
Cited by: 14
Author(s): Viviana Poliseno, Sı́lvia Chaves, Leonardo Brunetti, Fulvio Loiodice, Antonio Carrieri, Antonio Laghezza, Paolo Tortorella, João Duarte Magalhães, Sandra M. Cardoso, M. Amélia Santos, Luca Piemontese
Software Mentions: 2
Published: almost 4 years ago

10.1155/2013/185679

Enabling Large-Scale Biomedical Analysis in the Cloud
Cited by: 15
Author(s): Yen-Ting Lin, Chin-Sheng Yu, Yen-Jen Lin
Software Mentions: 2
Published: almost 12 years ago

10.1186/s12915-018-0545-0

FlashFry: a fast and flexible tool for large-scale CRISPR target design
Cited by: 80
Author(s): Aaron McKenna, Jay Shendure
Software Mentions: 2
Published: over 6 years ago

10.1155/2014/474219

A Performance/Cost Evaluation for a GPU-Based Drug Discovery Application on Volunteer Computing
Cited by: 8
Author(s): Ginés D. Guerrero, Baldomero Imbernón, Horacio Pérez‐Sánchez, Fernando Sanz, José M. García, José M. Cecilia
Software Mentions: 2
Published: almost 11 years ago

10.3389/frobt.2018.00011

A Two Teraflop Swarm
Cited by: 12
Author(s): Simon Jones, Matthew Studley, Sabine Hauert, Alan Winfield
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0094044

MC64-ClustalWP2: A Highly-Parallel Hybrid Strategy to Align Multiple Sequences in Many-Core Architectures
Cited by: 10
Author(s): David Díaz, Francisco J. Esteban, Pilar Hernández, J. A. Caballero, Antonio Guevara, Gabriel Dorado, Sergio Gálvez
Software Mentions: 2
Published: over 10 years ago

10.1186/1471-2105-13-196

Coupling SIMD and SIMT architectures to boost performance of a phylogeny-aware alignment kernel
Cited by: 12
Author(s): Nikolaos Alachiotis, Simon Berger, Alexandros Stamatakis
Software Mentions: 2
Published: over 12 years ago

10.1371/journal.pone.0255523

Finding inhibitors for PCSK9 using computational methods
Cited by: 12
Author(s): Rida Zainab, Afshan Kaleem, Michał B. Ponczek, Roheena Abdullah, Mehwish Iqtedar, Daniel C. Hoessli
Software Mentions: 2
Published: over 3 years ago

10.1371/journal.pone.0188721

Rubus: A compiler for seamless and extensible parallelism
Cited by: 0
Author(s): Muhammad Abdul Jabar Adnan, Faisal Aslam, Zahid Nawaz, Syed Mansoor Sarwar
Software Mentions: 2
Published: almost 7 years ago

10.1186/s12859-016-1192-5

Removing duplicate reads using graphics processing units
Cited by: 8
Author(s): Andrea Manconi, Marco Moscatelli, Giuliano Armano, Matteo Gnocchi, Alessandro Orro, Luciano Milanesi
Software Mentions: 2
Published: about 8 years ago

10.1371/journal.pone.0213736

RMut: R package for a Boolean sensitivity analysis against various types of mutations
Cited by: 5
Author(s): Hung-Cuong Trinh, Yung-Keun Kwon
Software Mentions: 2
Published: over 5 years ago

10.3389/fninf.2013.00050

Fast parallel image registration on CPU and GPU for diagnostic classification of Alzheimer's disease
Cited by: 330
Author(s): Denis P. Shamonin, Esther E. Bron, Boudewijn P. F. Lelieveldt, Marion Smits, Stefan Klein, Marius Staring
Software Mentions: 2
Published: almost 12 years ago

Projects: cran: OpenCL

Papers Mentioning OpenCL 236