cran: Andromeda | Projects | Ecosyste.ms: Papers

10.1073/pnas.2007056117

Histone variants in archaea and the evolution of combinatorial chromatin complexity
Cited by: 27
Author(s): Kathryn M Stevens, Jacob B. Swadling, Antoine Hocher, Corinna Bang, Simonetta Gribaldo, Ruth A. Schmitz, Tobias Warnecke
Software Mentions: 2
Published: almost 6 years ago

10.1186/s12916-019-1478-3

Profiling of the muscle-specific dystroglycan interactome reveals the role of Hippo signaling in muscular dystrophy and age-dependent muscle atrophy
Cited by: 13
Author(s): Andriy S. Yatsenko, Mariya M. Kucherenko, Yuanbin Xie, Dina Aweida, Henning Urlaub, Renate Scheibe, Shenhav Cohen, Halyna R. Shcherbata
Software Mentions: 2
Published: almost 7 years ago

10.1371/journal.ppat.1009580

A Ran-binding protein facilitates nuclear import of human papillomavirus type 16
Cited by: 10
Author(s): Kun-Yi Lai, Matteo Rizzato, Inci Aydin, Ruth Villalonga-Planells, Hannes C.A. Drexler, Mario Schelhaas
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.ppat.1008841

Phosphorylation controls RNA binding and transcription by the influenza virus polymerase
Cited by: 13
Author(s): Anthony R. Dawson, Gary Wilson, Elyse C. Freiberger, Arindam Mondal, Joshua J. Coon, Andrew Mehle
Software Mentions: 2
Published: about 6 years ago

10.1371/journal.ppat.1009326

The pentose phosphate pathway constitutes a major metabolic hub in pathogenic Francisella
Cited by: 13
Author(s): Héloïse Rytter, Anne Jamet, Jason Ziveri, Elodie Ramond, Mathieu Coureuil, Pauline Lagouge-Roussey, Daniel Euphrasie, Fabiola Tros, Nicolas Goudin, Cérina Chhuon, Ivan Nemazanyy, Fabrício Edgar de Moraes, Carlos Alberto Labate, Ida Chiara Guerrera, Alain Charbit
Software Mentions: 2
Published: over 5 years ago

10.15252/msb.20156423

Differential dynamics of the mammalian <scp>mRNA</scp> and protein expression response to misfolding stress
Cited by: 140
Author(s): Zhe Cheng, Guoshou Teo, Sabrina Krueger, Tara M. Rock, Hiromi W. L. Koh, Hyungwon Choi, Christine Vogel
Software Mentions: 2
Published: almost 11 years ago

10.1186/s12916-021-02071-9

Absolute quantitative proteomics using the total protein approach to identify novel clinical immunohistochemical markers in renal neoplasms
Cited by: 3
Author(s): Susana Jorge, José Luís Capelo, William A. LaFramboise, Swati Satturwar, Dimitrios Korentzelos, Sheldon Bastacky, Gabriela Quiroga‐Garza, Rajiv Dhir, Jacek R. Wiśniewski, Carlos Lodeiro, Hugo M. Santos
Software Mentions: 2
Published: about 5 years ago

10.1186/s12870-016-0900-7

Modulation of plant growth in vivo and identification of kinase substrates using an analog-sensitive variant of CYCLIN-DEPENDENT KINASE A;1
Cited by: 13
Author(s): Hirofumi Harashima, Nico Dißmeyer, Philippe Hammann, Yuko Nomura, Katharina Kramer, Hirofumi Nakagami, Arp Schnittger
Software Mentions: 2
Published: about 10 years ago

10.7717/peerj.4599

Phosphoproteomic insights into processes influenced by the kinase-like protein DIA1/C3orf58
Cited by: 7
Author(s): Agnieszka Hareza, Magda Bakun, Bianka Świderska, Małgorzata Dudkiewicz, Alicja Koscielny, Anna T. Bajur, Jacek Jaworski, Michał Dadlez, Krzysztof Pawłowski
Software Mentions: 2
Published: over 8 years ago

10.7717/peerj.9988

Analysis of the infant gut microbiome reveals metabolic functional roles associated with healthy infants and infants with atopic dermatitis using metaproteomics
Cited by: 10
Author(s): Amornthep Kingkaw, Massalin Nakphaichit, Narissara Suratannon, Sunee Nitisinprasert, Chantha Wongoutong, Pantipa Chatchatee, Sucheewin Krobthong, Sawanya Charoenlappanit, Sittiruk Roytrakul, Wanwipa Vongsangnak
Software Mentions: 2
Published: about 6 years ago

10.15252/msb.202010125

Identification of covalent modifications regulating immune signaling complex composition and phenotype
Cited by: 5
Author(s): Annika Frauenstein, Stefan Ebner, Fynn M. Hansen, Ankit Sinha, Kshiti Phulphagar, Kirby N. Swatek, Daniel Hornburg, Matthias Mann, Felix Meissner
Software Mentions: 2
Published: over 5 years ago

10.15252/msb.20177663

A proteomic atlas of insulin signalling reveals tissue‐specific mechanisms of longevity assurance
Cited by: 41
Author(s): Luke S Tain, Robert Sehlke, Chirag Jain, Manopriya Chokkalingam, Nagarjuna Nagaraj, Paul Essers, Mark Rassner, Sebastian Grönke, Jenny Froelich, Christoph Dieterich, Matthias Mann, Nazif Alic, Andreas Beyer, Linda Partridge
Software Mentions: 2
Published: about 9 years ago

10.3390/metabo11070459

Lipoprotein Proteomics and Aortic Valve Transcriptomics Identify Biological Pathways Linking Lipoprotein(a) Levels to Aortic Stenosis
Cited by: 13
Author(s): Raphaëlle Bourgeois, Jérôme Bourgault, Audrey-Anne Després, Nicolas Perrot, Jakie Guertin, Arnaud Girard, Patricia L. Mitchell, Clarisse Gotti, Sylvie Bourassa, Corey A. Scipione, Nathalie Gaudreault, Michael B. Boffa, Marlys L. Koschinsky, Philippe Pîbarot, Arnaud Droit, Sébastien Thériault, Patrick Mathieu, Yohan Bossé, Benoît J. Arsenault
Software Mentions: 2
Published: over 5 years ago

10.3389/fpls.2017.01669

Improved Quantitative Plant Proteomics via the Combination of Targeted and Untargeted Data Acquisition
Cited by: 15
Author(s): Gene Hart‐Smith, Rodrigo S. Reis, Peter M. Waterhouse, Marc R. Wilkins
Software Mentions: 2
Published: about 9 years ago

10.1002/1878-0261.12463

Perineural invasion in pancreatic cancer: proteomic analysis and in vitro modelling
Cited by: 37
Author(s): Wasfi Alrawashdeh, Richard C. Jones, Laurent Dumartin, Tomasz P. Radon, Pedro R. Cutillas, Roger Feakins, Branko Dmitrović, İhsan Ekin Demir, Güralp O. Ceyhan, Tatjana Crnogorac‐Jurčević
Software Mentions: 2
Published: over 7 years ago

10.1111/acel.12780

Oxidation resistance 1 is a novel senolytic target
Cited by: 81
Author(s): Xin Zhang, Suping Zhang, Xingui Liu, Yingying Wang, Jianhui Chang, Xuan Zhang, Samuel G. Mackintosh, Alan J. Tackett, Yonghan He, Dongwen Lv, Rémi-Martin Laberge, Judith Campisi, Jianrong Wang, Guangrong Zheng, Daohong Zhou
Software Mentions: 2
Published: over 8 years ago

10.3389/fpls.2018.01590

Quantitative Phosphoproteomic and System-Level Analysis of TOR Inhibition Unravel Distinct Organellar Acclimation in Chlamydomonas reinhardtii
Cited by: 28
Author(s): Valentin Roustan, Wolfram Weckwerth
Software Mentions: 2
Published: almost 8 years ago

10.3389/fpls.2015.00739

Global analysis of lysine acetylation in strawberry leaves
Cited by: 60
Author(s): Xianping Fang, Wenyue Chen, Yun Zhao, Songlin Ruan, Heng-Mu Zhang, Chengqi Yan, Liang Jin, Lingling Cao, Jun Zhu, Huiqin Ma, Zhongyi Cheng
Software Mentions: 2
Published: about 11 years ago

10.3389/fpls.2021.622795

Magnetic Field Induced Changes in the Shoot and Root Proteome of Barley (Hordeum vulgare L.)
Cited by: 7
Author(s): Azita Shabrangy, Arindam Ghatak, Shuang Zhang, Alfred Priller, Palak Chaturvedi
Software Mentions: 2
Published: over 5 years ago

10.3390/md18120599

Biofunctionality of Enzymatically Derived Peptides from Codfish (Gadus morhua) Frame: Bulk In Vitro Properties, Quantitative Proteomics, and Bioinformatic Prediction
Cited by: 10
Author(s): Ali Jafarpour, Simon Gregersen, Rocio Marciel Gomes, Paolo Marcatili, Tobias Hegelund Olsen, Charlotte Jacobsen, Michael Toft Overgaard, Ann‐Dorit Moltke Sørensen
Software Mentions: 2
Published: almost 6 years ago

10.1186/s12864-019-6151-x

Proteomic analysis showing the signaling pathways involved in the rhizome enlargement process in Nelumbo nucifera
Cited by: 16
Author(s): Dingding Cao, Rebecca Njeri Damaris, Yue Zhang, Meihui Liu, Ming Li, Pingfang Yang
Software Mentions: 2
Published: about 7 years ago

10.1016/j.molmet.2018.03.003

Epoxygenase inactivation exacerbates diet and aging-associated metabolic dysfunction resulting from impaired adipogenesis
Cited by: 15
Author(s): Antoni Olona, Ximena Terra, Jeong‐Hun Ko, Carme Grau-Bové, Montserrat Pinent, Anna Ardèvol, Ana García Díaz, Aida Moreno‐Moral, Matthew L. Edin, David Bishop‐Bailey, Darryl C. Zeldin, Timothy J. Aitman, Enrico Petretto, Mayte Blay, Jacques Behmoaras
Software Mentions: 2
Published: over 8 years ago

10.3390/md16020042

Proteomic Analyses of the Unexplored Sea Anemone Bunodactis verrucosa
Cited by: 17
Author(s): Dany Domínguez-Pérez, Alexandre Campos, Armando A. Rodríguez, Maria V. Turkina, Tiago Ribeiro, Hugo Osório, Vı́tor Vasconcelos, Agostinho Antunes
Software Mentions: 2
Published: almost 9 years ago

10.1016/j.molmet.2019.04.006

Reduced insulin action in muscle of high fat diet rats over the diurnal cycle is not associated with defective insulin signaling
Cited by: 10
Author(s): Lewin Small, Amanda E. Brandon, Benjamin L. Parker, Vinita Deshpande, Azrah Samsudeen, Greg M. Kowalski, Jane Reznick, Donna Wilks, Elaine Preston, Clinton R. Bruce, David E. James, Nigel Turner, Gregory J. Cooney
Software Mentions: 2
Published: over 7 years ago

10.1007/s00401-021-02285-4

Age-associated insolubility of parkin in human midbrain is linked to redox balance and sequestration of reactive dopamine metabolites
Cited by: 26
Author(s): Jacqueline M. Tokarew, Daniel N. El-Kodsi, Nathalie A. Lengacher, Travis K. Fehr, Antoinette Nguyen, Bojan Shutinoski, Brian O’Nuallain, Ming Jin, Jasmine Khan, Andy Cheuk-Him Ng, Juan Li, Quan Jiang, Mei Zhang, Liqun Wang, Rajib Sengupta, Kathryn R. Barber, An Tran, Doo Soon Im, Steve Callaghan, David Park, Stéphanie Zandee, Xiajun Dong, Clemens R. Scherzer, Alexandre Prat, Eve C. Tsai, Masashi Takanashi, Nobutaka Hattori, Jennifer A. Chan, Luigi Zecca, Andrew B. West, Arne Holmgren, Lawrence G. Puente, Gary S. Shaw, Gergely Tóth, John Woulfe, Peggy Taylor, Julianna J. Tomlinson, Michael G. Schlossmacher
Software Mentions: 2
Published: over 5 years ago

10.3389/fneur.2017.00110

Phosphoproteome Profiling Reveals Circadian Clock Regulation of Posttranslational Modifications in the Murine Hippocampus
Cited by: 22
Author(s): Cheng‐Kang Chiang, Bo Xu, Neel Mehta, Janice Mayne, Warren Sun, Kai Cheng, Zhibin Ning, Jing Dong, Hanfa Zou, Hai-Ying Mary Cheng, Daniel Figeys
Software Mentions: 2
Published: over 9 years ago

10.3389/fnmol.2018.00345

S-palmitoylation Is Required for the Control of Growth Cone Morphology of DRG Neurons by CNP-Induced cGMP Signaling
Cited by: 13
Author(s): Alexandre Dumoulin, Alina Dagane, Gunnar Dittmar, Fritz G. Rathjen
Software Mentions: 2
Published: about 8 years ago

10.3389/fnins.2019.00143

Cx43-Associated Secretome and Interactome Reveal Synergistic Mechanisms for Glioma Migration and MMP3 Activation
Cited by: 9
Author(s): Qurratulain Aftab, Marc Mesnil, Emmanuel Ojefua, Alisha Poole, Jenna Noordenbos, Pierre‐Olivier Strale, Chris Sitko, Caitlin Le, Nikolay Stoynov, Leonard J. Foster, Wun-Chey Sin, Christian C. Naus, Vincent C. Chen
Software Mentions: 2
Published: over 7 years ago

10.3389/fphys.2020.00520

Inflammatory Drivers of Cardiovascular Disease: Molecular Characterization of Senescent Coronary Vascular Smooth Muscle Cells
Cited by: 19
Author(s): Stevan D. Stojanović, Maximilian Fuchs, Meik Kunz, Xiaoyan Ke, Annette Just, Andreas Pich, Johann Bauersachs, Jan Fiedler, Daniel Sedding, Thomas Thum
Software Mentions: 2
Published: over 6 years ago

10.3389/fnmol.2021.658339

Broad Influence of Mutant Ataxin-3 on the Proteome of the Adult Brain, Young Neurons, and Axons Reveals Central Molecular Processes and Biomarkers in SCA3/MJD Using Knock-In Mouse Model
Cited by: 7
Author(s): Kalina Wiatr, Łukasz Marczak, J. Pérot, Emmanuel Brouillet, Julien Flament, Maciej Figiel
Software Mentions: 2
Published: over 5 years ago

10.3390/molecules26082125

Glycan-Induced Protein Dynamics in Human Norovirus P Dimers Depend on Virus Strain and Deamidation Status
Cited by: 10
Author(s): Jasmin Dülfer, Hao Yan, Maxim N. Brodmerkel, Robert Creutznacher, Álvaro Mallagaray, Thomas Peters, Carl Caleman, Erik Marklund, Charlotte Uetrecht
Software Mentions: 2
Published: over 5 years ago

10.3389/fmicb.2020.594743

Systematic Analysis of Lysine Lactylation in the Plant Fungal Pathogen Botrytis cinerea
Cited by: 37
Author(s): Mingming Gao, Ning Zhang, Wenxing Liang
Software Mentions: 2
Published: about 6 years ago

10.1186/s13395-020-00226-5

High-throughput proteomics fiber typing (ProFiT) for comprehensive characterization of single skeletal muscle fibers
Cited by: 24
Author(s): Sebastian Kallabis, Lena Abraham, Stefan Müller, Verena Dzialas, Clara Türk, Janica L. Wiederstein, Theresa Bock, Hendrik Nolte, Leonardo Nogara, Bert Blaauw, Thomas Braun, Marcus Krüger
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pbio.2004194

Quantitative proteomic characterization and comparison of T helper 17 and induced regulatory T cells
Cited by: 17
Author(s): Imran Mohammad, Kari Nousiainen, Santosh D. Bhosale, Inna Starskaia, Robert Moulder, Anne Rokka, Fang Cheng, Ponnuswamy Mohanasundaram, John E. Eriksson, David R. Goodlett, Harri Lähdesmäki, Zhi Chen
Software Mentions: 2
Published: over 8 years ago

10.3389/fmolb.2021.659058

Phenotypic and Multi-Omics Characterization of Escherichia coli K-12 Adapted to Chlorhexidine Identifies the Role of MlaA and Other Cell Envelope Alterations Regulated by Stress Inducible Pathways in CHX Resistance
Cited by: 7
Author(s): Branden S. J. Gregorchuk, Shelby L Reimer, Kari A. C. Green, Nicola Helen Cartwright, Daniel R. Beniac, Shannon L Hiebert, Timothy F. Booth, Patrick Chong, Garrett Westmacott, George G. Zhanel, Denice C. Bay
Software Mentions: 2
Published: over 5 years ago

10.3389/fnmol.2021.623659

Targeted Quantification of Detergent-Insoluble RNA-Binding Proteins in Human Brain Reveals Stage and Disease Specific Co-aggregation in Alzheimer’s Disease
Cited by: 12
Author(s): Qi Guo, Eric B. Dammer, Maotian Zhou, Sean R. Kundinger, Marla Gearing, James J. Lah, Aĺlan I. Levey, Zhandong Liu, Nicholas T. Seyfried
Software Mentions: 2
Published: over 5 years ago

10.3389/fmicb.2015.00084

Novel Flp pilus biogenesis-dependent natural transformation
Cited by: 32
Author(s): Angel Angelov, Paul M. P. van Bergen, Florian Nadler, Philipp Hornburg, Antoni Lichev, Maria Übelacker, Fiona Pachl, Bernhard Küster, Wolfgang Liebl
Software Mentions: 2
Published: over 11 years ago

10.26508/lsa.202101084

Quantitative proteomics identifies PTP1B as modulator of B cell antigen receptor signaling
Cited by: 0
Author(s): Jennifer Schwarz, Lorenz Grundmann, Thomas Kokot, Kathrin Kläsener, Sandra Fotteler, Dávid Medgyesi, Maja Köhn, Michael Reth, Bettina Warscheid
Software Mentions: 2
Published: about 5 years ago

10.3389/fmicb.2018.02977

Xylem Sap Proteomics Reveals Distinct Differences Between R Gene- and Endophyte-Mediated Resistance Against Fusarium Wilt Disease in Tomato
Cited by: 34
Author(s): Francisco J. de Lamo, Maria E. Constantin, David H. Fresno, Sjef Boeren, Martijn Rep, Frank L. W. Takken
Software Mentions: 2
Published: almost 8 years ago

10.3389/fmicb.2019.00384

Mixotrophic Growth Under Micro-Oxic Conditions in the Purple Sulfur Bacterium “Thiodictyon syntrophicum”
Cited by: 14
Author(s): Samuel M. Luedin, Nicola Storelli, Francesco Danza, Samuele Roman, Matthias Wittwer, Joël F. Pothier, Mauro Tonolla
Software Mentions: 2
Published: over 7 years ago

10.1016/j.molcel.2019.08.005

Polyamines Control eIF5A Hypusination, TFEB Translation, and Autophagy to Reverse B Cell Senescence
Cited by: 189
Author(s): Hanlin Zhang, Ghada Alsaleh, Jack Feltham, Yizhe Sun, Gennaro Napolitano, Thomas Riffelmacher, P. David Charles, Lisa Frau, Philip Hublitz, Zhanru Yu, Shabaz Mohammed, Andrea Ballabio, Stefan Balabanov, Jane Mellor, Anna Katharina Simon
Software Mentions: 2
Published: about 7 years ago

10.1371/journal.pgen.1009583

RIOK2 phosphorylation by RSK promotes synthesis of the human small ribosomal subunit
Cited by: 6
Author(s): Emilie L. Cerezo, Thibault Houlès, Oriane Lié, Marie-Kerguelen Sarthou, Charlotte Audoynaud, Geneviève Lavoie, Maral Halladjian, Sylvain Cantaloube, Carine Froment, Odile Burlet‐Schiltz, Y. Henry, Philippe P. Roux, Anthony K. Henras, Yves Roméo
Software Mentions: 2
Published: over 5 years ago

10.3389/fpls.2020.00872

Seed Metabolism and Pathogen Resistance Enhancement in Pisum sativum During Colonization of Arbuscular Mycorrhizal Fungi: An Integrative Metabolomics-Proteomics Approach
Cited by: 9
Author(s): Nima Ranjbar Sistani, Getinet Desalegn, Hans‐Peter Kaul, Stefanie Wienkoop
Software Mentions: 2
Published: over 6 years ago

10.1002/pmic.201400372

Computational phosphoproteomics: From identification to localization
Cited by: 23
Author(s): Dave C. H. Lee, Andrew R. Jones, Simon J. Hubbard
Software Mentions: 2
Published: over 11 years ago

10.3389/fmicb.2020.00189

Loss of the Periplasmic Chaperone Skp and Mutations in the Efflux Pump AcrAB-TolC Play a Role in Acquired Resistance to Antimicrobial Peptides in Salmonella typhimurium
Cited by: 11
Author(s): Gal Kapach, Reut Nuri, Christiane Schmidt, Adi Danin, Shir Ferrera, Alon Savidor, Roman G. Gerlach, Yechiel Shai
Software Mentions: 2
Published: over 6 years ago

10.26508/lsa.201900603

Phenotypic proteomic profiling identifies a landscape of targets for circadian clock–modulating compounds
Cited by: 13
Author(s): Ray S, Radosław Lach, Kate J Heesom, Utham K. Valekunja, Vesela Encheva, Ambrosius P. Snijders, Akhilesh B. Reddy
Software Mentions: 2
Published: almost 7 years ago

10.1016/j.molcel.2016.11.001

A SUMO-Dependent Protein Network Regulates Chromosome Congression during Oocyte Meiosis
Cited by: 66
Author(s): Federico Pelisch, Triin Tammsalu, Bin Wang, Ellis Jaffray, Anton Gartner, Ronald T. Hay
Software Mentions: 2
Published: almost 10 years ago

10.3389/fmicb.2019.03101

Proteomic Investigation Uncovers Potential Targets and Target Sites of Pneumococcal Serine-Threonine Kinase StkP and Phosphatase PhpP
Cited by: 25
Author(s): Claudia Hirschfeld, Alejandro Gómez-Mejía, Jürgen Bartel, Christian Hentschker, Manfred Rohde, Sandra Maaß, Sven Hammerschmidt, Dörte Becher
Software Mentions: 2
Published: over 6 years ago

10.26508/lsa.201900380

Cellular response upon proliferation in the presence of an active mitotic checkpoint
Cited by: 2
Author(s): Andrea Corno, Elena Chiroli, Fridolin Groß, Claudio Vernieri, Vittoria Matafora, Stefano Maffini, Marco Cosentino Lagomarsino, Ángela Bachi, Andrea Ciliberto
Software Mentions: 2
Published: over 7 years ago

10.1186/s12864-020-07194-6

The expression of the acarbose biosynthesis gene cluster in Actinoplanes sp. SE50/110 is dependent on the growth phase
Cited by: 3
Author(s): Julian Droste, Vera Ortseifen, Lena Schaffert, Marcus Persicke, Susanne Schneiker-Bekel, Alfred Pühler, Jörn Kalinowski
Software Mentions: 2
Published: almost 6 years ago

10.3389/fmicb.2020.564350

Global Proteomic Analysis of Lysine Crotonylation in the Plant Pathogen Botrytis cinerea
Cited by: 7
Author(s): Ning Zhang, Zhenzhou Yang, Wenxing Liang, Mengjie Liu
Software Mentions: 2
Published: about 6 years ago

10.3389/fmicb.2014.00432

Characterization of the surfaceome of the metal-reducing bacterium Desulfotomaculum reducens
Cited by: 16
Author(s): Elena Dalla Vecchia, Paul Shao, Elena I. Suvorova, Diego Chiappe, Romain Hamelin, Rizlan Bernier‐Latmani
Software Mentions: 2
Published: about 12 years ago

10.3389/fmicb.2021.634366

The Role of Pseudo-Orthocaspase (SyOC) of Synechocystis sp. PCC 6803 in Attenuating the Effect of Oxidative Stress
Cited by: 3
Author(s): Saul Lema A, Marina Klemenčič, Franziska Völlmy, Maarten Altelaar, Christiane Funk
Software Mentions: 2
Published: over 5 years ago

10.3389/fmicb.2017.02599

Low Concentrations of Vitamin C Reduce the Synthesis of Extracellular Polymers and Destabilize Bacterial Biofilms
Cited by: 61
Author(s): Santosh Pandit, Vaishnavi Ravikumar, Alyaa M. Abdel-Haleem, Abderahmane Derouiche, Venkata Raghavendra Subrahmanya Sar Mokkapati, Carina Sihlbom, Katsuhiko Mineta, Takashi Gojobori, Xin Gao, Fredrik Westerlund, Ivan Mijaković
Software Mentions: 2
Published: almost 9 years ago

10.1074/mcp.RA117.000315

Compartment-resolved Proteomic Analysis of Mouse Aorta during Atherosclerotic Plaque Formation Reveals Osteoclast-specific Protein Expression
Cited by: 27
Author(s): Michael Wierer, Matthias Prestel, Herbert B. Schiller, Guangyao Yan, Christoph Schaab, Sepiede Azghandi, Julia Werner, Thorsten Kessler, Rainer Malik, Marta Murgia, Zouhair Aherrahrou, Heribert Schunkert, Martin Dichgans, Matthias Mann
Software Mentions: 2
Published: almost 9 years ago

10.3389/fmicb.2019.02596

Multiomic Fermentation Using Chemically Defined Synthetic Hydrolyzates Revealed Multiple Effects of Lignocellulose-Derived Inhibitors on Cell Physiology and Xylose Utilization in Zymomonas mobilis
Cited by: 13
Author(s): Yaoping Zhang, Jessica M. Vera, Dan Xie, Jose Serate, Edward L. Pohlmann, John N. Russell, Alexander S. Hebert, Joshua J. Coon, Trey K. Sato, Robert Landick
Software Mentions: 2
Published: almost 7 years ago

10.3389/fmicb.2021.618566

Distinct Human Gut Microbial Taxonomic Signatures Uncovered With Different Sample Processing and Microbial Cell Disruption Methods for Metaproteomic Analysis
Cited by: 10
Author(s): Carmen García-Durán, Raquel Martínez-López, Inés Zapico, Enrique Pérez, Eduardo Romeu, Javier Arroyo, María Luisa Hernáez, Aida Pitarch, Lucía Monteoliva, Concha Gil
Software Mentions: 2
Published: over 5 years ago

10.3390/ijms20235911

Global Proteomic Analysis Reveals Widespread Lysine Succinylation in Rice Seedlings
Cited by: 10
Author(s): Kai Zhang, Ye Xiong, Wenxian Sun, Guo‐Liang Wang, Wende Liu
Software Mentions: 2
Published: almost 7 years ago

10.3389/fmed.2017.00159

Proteomics of Eosinophil Activation
Cited by: 6
Author(s): Deane F. Mosher, Emily M. Wilkerson, Keren B. Turton, Alexander S. Hebert, Joshua J. Coon
Software Mentions: 2
Published: about 9 years ago

10.3389/fmicb.2021.725612

The Binary Toxin of Clostridioides difficile Alters the Proteome and Phosphoproteome of HEp-2 Cells
Cited by: 8
Author(s): Florian Stieglitz, Ralf Gerhard, Andreas Pich
Software Mentions: 2
Published: about 5 years ago

10.3389/fimmu.2021.643441

Comparative Analysis of Global Proteome and Lysine Acetylome Between Naive CD4+ T Cells and CD4+ T Follicular Helper Cells
Cited by: 2
Author(s): Ming Zhao, Sujie Jia, Xiaofei Gao, Hong Qiu, Ruifang Wu, Haijing Wu, Qianjin Lu
Software Mentions: 2
Published: over 5 years ago

10.3389/fimmu.2020.00033

Molecular Signatures of Neuroinflammation Induced by αSynuclein Aggregates in Microglial Cells
Cited by: 47
Author(s): Satyapriya Sarkar, Eric B. Dammer, Emir Malovic, Abby L. Olsen, Syed Ali Raza, Tianwen Gao, Hailian Xiao, Danielle Oliver, Duc M. Duong, Valerie Joers, Nicholas T. Seyfried, Meixiang Huang, Thomas Kukar, Malú G. Tansey, Anumantha G. Kanthasamy, Srikant Rangaraju
Software Mentions: 2
Published: almost 7 years ago

10.3389/fimmu.2020.565484

Prenatal Endotoxin Exposure Induces Fetal and Neonatal Renal Inflammation via Innate and Th1 Immune Activation in Preterm Pigs
Cited by: 8
Author(s): Tik Muk, Pingping Jiang, Allan Stensballe, Kerstin Skovgaard, Per Torp Sangild, Duc Ninh Nguyen
Software Mentions: 2
Published: about 6 years ago

10.3389/fimmu.2020.01981

Biogenesis of HLA Ligand Presentation in Immune Cells Upon Activation Reveals Changes in Peptide Length Preference
Cited by: 7
Author(s): Fabio Marino, Aikaterini Semilietof, Justine Michaux, HuiSong Pak, George Coukos, Markus Müller, Michal Bassani-Sternberg
Software Mentions: 2
Published: about 6 years ago

10.3389/fmicb.2019.00094

Combined Transcriptome and Proteome Analysis of RpoS Regulon Reveals Its Role in Spoilage Potential of Pseudomonas fluorescens
Cited by: 21
Author(s): Xiaoxiang Liu, Jun Xu, Junli Zhu, Peng Du, Aijun Sun
Software Mentions: 2
Published: over 7 years ago

10.3390/ijms21239043

Multi-Omics Integration Highlights the Role of Ubiquitination in CCl4-Induced Liver Fibrosis
Cited by: 9
Author(s): María Mercado-Gómez, Fernando Lopitz‐Otsoa, Mikel Azkargorta, Marina Serrano‐Maciá, Sofía Lachiondo‐Ortega, Naroa Goikoetxea‐Usandizaga, Rubén Rodríguez-Agudo, David Fernández‐Ramos, Maider Bizkarguenaga, Virginia Gutiérrez‐de Juan, Benoît Lectez, Kerman Aloria, Jesús M. Arizmendi, Jorge Simón, Cristina Alonso, Juan José Lozano, Matías A. Ávila, Jesús M. Bañales, J. J. G. Marin, Naiara Beraza, José M. Mato, Félix Elortza, Rosa Barrio, James D. Sutherland, Ugo Mayor, María Luz Martínez‐Chantar, Teresa C. Delgado
Software Mentions: 2
Published: almost 6 years ago

10.1074/mcp.M115.048090

Characterization of the Tyrosine Kinase-Regulated Proteome in Breast Cancer by Combined use of RNA interference (RNAi) and Stable Isotope Labeling with Amino Acids in Cell Culture (SILAC) Quantitative Proteomics
Cited by: 15
Author(s): Justin Stebbing, Hua Zhang, Yang Xu, Arnhild Grothey, Paul Ajuh, Nicos Angelopoulos, Georgios Giamas
Software Mentions: 2
Published: about 11 years ago

10.1074/mcp.RA118.000982

N-terminal Acetylation Levels Are Maintained During Acetyl-CoA Deficiency in Saccharomyces cerevisiae
Cited by: 25
Author(s): Sylvia Varland, Henriette Aksnes, Fedor Kryuchkov, Francis Impens, Delphi Van Haver, Veronique Jonckheere, Mathias Ziegler, Kris Gevaert, Petra Van Damme, Thomas Arnesen
Software Mentions: 2
Published: almost 8 years ago

10.3390/cancers13143618

TRAF6 Phosphorylation Prevents Its Autophagic Degradation and Re-Shapes LPS-Triggered Signaling Networks
Cited by: 3
Author(s): Julia Busch, Rita Moreno, Laureano de la Vega, Vera V. Saul, Susanne Bacher, Felix von Zweydorf, Marius Ueffing, Axel Weber, Christian Johannes Gloeckner, Uwe Linne, Michael Kracht, M. Lienhard Schmitz
Software Mentions: 2
Published: over 5 years ago

10.3390/ijms22115619

Molecular Mechanisms of Fetal Tendon Regeneration Versus Adult Fibrous Repair
Cited by: 11
Author(s): Iris Ribitsch, Andrea Bileck, Alexander D. Aldoshin, Maciej M. Kańduła, Rupert L. Mayer, Monika Egerbacher, Simone Gabner, Ulrike Auer, Sinan Gültekin, Johann Huber, David P. Kreil, Christopher Gerner, Florien Jenner
Software Mentions: 2
Published: over 5 years ago

10.3389/fimmu.2021.702359

PPE38-Secretion-Dependent Proteins of M. tuberculosis Alter NF-kB Signalling and Inflammatory Responses in Macrophages
Cited by: 3
Author(s): James Gallant, Tiaan Heunis, Caroline G. G. Beltran, Karin Schildermans, Sven C. M. Bruijns, Inge Mertens, Wilbert Bitter, Samantha L. Sampson
Software Mentions: 2
Published: over 5 years ago

10.3389/fimmu.2021.573266

Pneumolysin Is Responsible for Differential Gene Expression and Modifications in the Epigenetic Landscape of Primary Monocyte Derived Macrophages
Cited by: 5
Author(s): Joby Cole, Adrienn Angyal, Richard D. Emes, Tim Mitchell, Mark J. Dickman, David H. Dockrell
Software Mentions: 2
Published: over 5 years ago

10.1186/s40170-019-0194-y

CHCHD4 confers metabolic vulnerabilities to tumour cells through its control of the mitochondrial respiratory chain
Cited by: 14
Author(s): Luke W. Thomas, Jenna M. Stephen, Cinzia Esposito, Simon Hoer, Robin Antrobus, Alaa A. Ahmed, Hasan Al-Habib, Margaret Ashcroft
Software Mentions: 2
Published: over 7 years ago

10.1074/mcp.TIR117.000516

Stable Isotope Dynamic Labeling of Secretomes (SIDLS) Identifies Authentic Secretory Proteins Released by Cancer and Stromal Cells
Cited by: 8
Author(s): Dean E. Hammond, J. Dinesh Kumar, Lorna Raymond, Deborah M. Simpson, Robert J. Beynon, Graham J. Dockray, Andrea Varró
Software Mentions: 2
Published: about 8 years ago

10.3389/fgene.2020.616435

Multi-Omics Analysis of Diabetic Nephropathy Reveals Potential New Mechanisms and Drug Targets
Cited by: 16
Author(s): Qian Sha, Jinxiu Lyu, Meng Zhao, Haijuan Li, Mengzhe Guo, Qiang Sun
Software Mentions: 2
Published: almost 6 years ago

10.3389/fendo.2019.00872

Dysregulation of the Mitochondrial Proteome Occurs in Mice Lacking Adiponectin Receptor 1
Cited by: 7
Author(s): Mark E Pepin, Christoph Koentges, Katharina Pfeil, Johannes Gollmer, Sophia Kersting, Sebastian Wiese, Michael M. Hoffmann, Katja E. Odening, Constantin von zur Mühlen, Philipp Diehl, Peter Stachon, Dennis Wolf, Adam R. Wende, Christoph Bode, Andreas Zirlik, Heiko Bugger
Software Mentions: 2
Published: almost 7 years ago

10.1128/AEM.02091-17

Multi-omics Reveals the Lifestyle of the Acidophilic, Mineral-Oxidizing Model Species Leptospirillum ferriphilum T
Cited by: 64
Author(s): Stephan Christel, Malte Herold, Sören Bellenberg, Mohamed El Hajjami, Antoine Buetti‐Dinh, Igor V. Pivkin, Wolfgang Sand, Paul Wilmes, Ansgar Poetsch, Mark Dopson
Software Mentions: 2
Published: almost 9 years ago

10.3389/fendo.2019.00674

Glucocorticoid Treatment Leads to Aberrant Ion and Macromolecular Transport in Regenerating Zebrafish Fins
Cited by: 18
Author(s): Johannes R. Schmidt, Karina Geurtzen, Martin von Bergen, Kristin Schubert, Franziska Knopf
Software Mentions: 2
Published: about 7 years ago

10.3389/fgene.2020.551495

Systematic Identification of Hub Genes in Placenta Accreta Spectrum Based on Integrated Transcriptomic and Proteomic Analysis
Cited by: 5
Author(s): Bingnan Chen, Di Wang, Yue Bian, Jiapo Li, Tian Yang, Na Li, Chong Qiao
Software Mentions: 2
Published: about 6 years ago

10.3389/fimmu.2020.581070

Plasma Proteome Responses in Salmonid Fish Following Immunization
Cited by: 8
Author(s): Fiona K. Bakke, Milena Mira Monte, David Stead, Dwight R. Causey, Alex Douglas, Daniel J. Macqueen, Helen Dooley
Software Mentions: 2
Published: about 6 years ago

10.18632/oncotarget.14272

CD147: a small molecule transporter ancillary protein at the crossroad of multiple hallmarks of cancer and metabolic reprogramming
Cited by: 34
Author(s): Agnieszka A. Kendrick, Johnathon Schafer, Monika Dzieciątkowska, Travis Nemkov, Angelo D’Alessandro, Deepika Neelakantan, Heide L. Ford, Chad G. Pearson, Colin D. Weekes, Kirk C. Hansen, Elan Eisenmesser
Software Mentions: 2
Published: almost 10 years ago

10.1371/journal.pone.0161513

Preliminary Validation of a High Docosahexaenoic Acid (DHA) and -Linolenic Acid (ALA) Dietary Oil Blend: Tissue Fatty Acid Composition and Liver Proteome Response in Atlantic Salmon (Salmo salar) Smolts
Cited by: 8
Author(s): Waldo G. Nuez-Ortín, Chris Carter, Richard Wilson, Ira Cooke, Peter D. Nichols
Software Mentions: 2
Published: about 10 years ago

10.3389/fcimb.2020.00443

Investigating Non-sterilizing Cure in TB Patients at the End of Successful Anti-TB Therapy
Cited by: 20
Author(s): Caroline G. G. Beltran, Tiaan Heunis, James Gallant, Rouxjeane Venter, Nelita du Plessis, André G. Loxton, Matthias Trost, Jill Winter, Stephanus T. Malherbe, Bavesh D Kana, Gerhard Walzl
Software Mentions: 2
Published: about 6 years ago

10.3390/cancers13061472

Persistent Inflammatory Stimulation Drives the Conversion of MSCs to Inflammatory CAFs That Promote Pro-Metastatic Characteristics in Breast Cancer Cells
Cited by: 17
Author(s): Linor Rubinstein-Achiasaf, Dina Morein, Hagar Ben-Yaakov, Yulia Liubomirski, Tsipi Meshel, Eti Elbaz, Orly Dorot, Edward Pichinuk, Michael Gershovits, Miguel Weil, Adit Ben‐Baruch
Software Mentions: 2
Published: over 5 years ago

10.3389/fcimb.2018.00145

The Loss of Expression of a Single Type 3 Effector (CT622) Strongly Reduces Chlamydia trachomatis Infectivity and Growth
Cited by: 14
Author(s): Mathilde M. Cossé, Michael L. Barta, Derek J. Fisher, Lena K. Oesterlin, Béatrice Niragire, Stéphanie Perrinet, Gaël A. Millot, P. Scott Hefty, Agathe Subtil
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.pone.0140036

In-Depth, Label-Free Analysis of the Erythrocyte Cytoplasmic Proteome in Diamond Blackfan Anemia Identifies a Unique Inflammatory Signature
Cited by: 25
Author(s): Esther N. Pesciotta, Hieu Lam, Andrew V. Kossenkov, Jingping Ge, Louise C. Showe, Philip J. Mason, Monica Bessler, David W. Speicher
Software Mentions: 2
Published: about 11 years ago

10.1186/s12864-019-6058-6

A homology-guided, genome-based proteome for improved proteomics in the alloploid Nicotiana benthamiana
Cited by: 40
Author(s): Jiorgos Kourelis, Farnusch Kaschani, Friederike Grosse‐Holz, Felix Homma, Markus Kaiser, Renier A. L. van der Hoorn
Software Mentions: 2
Published: about 7 years ago

10.1186/s40478-019-0847-7

Comparative profiling of the synaptic proteome from Alzheimer’s disease patients with focus on the APOE genotype
Cited by: 50
Author(s): Raphael Hesse, Maica Llavero Hurtado, Rosemary J. Jackson, Samantha L. Eaton, Abigail G. Herrmann, Martí Colom‐Cadena, Makis Tzioras, Declan King, Jamie Rose, Jane Tulloch, Chris-Anne McKenzie, Colin Smith, Christopher M. Henstridge, Douglas J. Lamont, Thomas M. Wishart, Tara L. Spires‐Jones
Software Mentions: 2
Published: almost 7 years ago

10.3389/fcell.2020.544043

Comparative Transcriptional Profiling of Motor Neuron Disorder-Associated Genes in Various Human Cell Culture Models
Cited by: 8
Author(s): Stefan Hauser, Stefanie Schuster, Elena Heuten, Philip Höflinger, Jakob Admard, Yvonne Schelling, Ana Velić, Boris Maček, Stephan Ossowski, Lüdger Schöls
Software Mentions: 2
Published: about 6 years ago

10.1371/journal.pone.0234918

ZapE/Afg1 interacts with Oxa1 and its depletion causes a multifaceted phenotype
Cited by: 7
Author(s): Jan Pyrih, Vendula Rašková, Ingrid Škodová-Sveráková, Tomáš Pánek, Julius Lukeš
Software Mentions: 2
Published: over 6 years ago

10.1016/j.mcpro.2021.100119

Identification of Endogenous Kinase Substrates by Proximity Labeling Combined with Kinase Perturbation and Phosphorylation Motifs
Cited by: 16
Author(s): Tomoya Niinae, Koshi Imami, Naoyuki Sugiyama, Yasushi Ishihama
Software Mentions: 2
Published: almost 6 years ago

10.1074/mcp.RA120.002359

Plasma Proteomes Can Be Reidentifiable and Potentially Contain Personally Sensitive and Incidental Findings
Cited by: 17
Author(s): Philipp E. Geyer, Sebastian Porsdam Mann, Peter V. Treit, Matthias Mann
Software Mentions: 2
Published: almost 6 years ago

10.3389/fbioe.2018.00019

Phosphoproteome of the Oleaginous Green Alga, Chlorella vulgaris UTEX 395, under Nitrogen-Replete and -Deplete Conditions
Cited by: 1
Author(s): Michael T. Guarnieri, Alida T. Gerritsen, Calvin A. Henard, Eric P. Knoshaug
Software Mentions: 2
Published: over 8 years ago

10.1074/mcp.M115.053926

Novel Molecular Insights into Classical and Alternative Activation States of Microglia as Revealed by Stable Isotope Labeling by Amino Acids in Cell Culture (SILAC)-based Proteomics*
Cited by: 45
Author(s): Harris Bell-Temin, Ashley E. Culver‐Cochran, Dale Chaput, Christina M. Carlson, Melanie N. Kuehl, Brant R. Burkhardt, Paula C. Bickford, Bin Liu, Stanley M. Stevens
Software Mentions: 2
Published: almost 11 years ago

10.3390/foods9091150

Living the Sweet Life: How Liquorilactobacillus hordei TMW 1.1822 Changes Its Behavior in the Presence of Sucrose in Comparison to Glucose
Cited by: 7
Author(s): Julia Bechtner, Christina Ludwig, Michael Kiening, Frank Jakob, Rudi F. Vogel
Software Mentions: 2
Published: about 6 years ago

10.1186/s12864-018-4517-0

Liver proteome response of pre-harvest Atlantic salmon following exposure to elevated temperature
Cited by: 37
Author(s): Waldo G. Nuez-Ortín, Chris Carter, Peter D. Nichols, Ira Cooke, Richard Wilson
Software Mentions: 2
Published: over 8 years ago

10.3390/foods9091147

An Artificial Intelligence Characterised Functional Ingredient, Derived from Rice, Inhibits TNF-α and Significantly Improves Physical Strength in an Inflammaging Population
Cited by: 13
Author(s): Kathy Kennedy, Brian Keogh, Cyril Lopez, Alessandro Adelfio, Brendan Molloy, Alish Kerr, Audrey Wall, Gaël Jalowicki, Thérèse A. Holton, Nora Khaldi
Software Mentions: 2
Published: about 6 years ago

10.3389/fncel.2021.662035

Integrative Cell Type-Specific Multi-Omics Approaches Reveal Impaired Programs of Glial Cell Differentiation in Mouse Culture Models of DM1
Cited by: 10
Author(s): Anchel González-Barriga, Louison Lallemant, Diana Mihaela Dincã, Sandra Bráz, Hélène Polvèche, Paul Magneron, Cédric Pionneau, Aline Huguet-Lachon, Jean‐Baptiste Claude, Cérina Chhuon, Ida Chiara Guerrera, Cyril F. Bourgeois, Didier Auboeuf, Geneviève Gourdon, Mário Gomes‐Pereira
Software Mentions: 2
Published: over 5 years ago

10.1038/s41426-018-0210-2

Associating H2O2-and NO-related changes in the proteome of Mycobacterium smegmatis with enhanced survival in macrophage
Cited by: 9
Author(s): Naadir Ganief, Jessica Sjouerman, Claudia Albeldas, Kehilwe C. Nakedi, Clemens Hermann, Bridget Calder, Jonathan M. Blackburn, Nelson C. Soares
Software Mentions: 2
Published: almost 8 years ago

10.15252/embr.202052289

Role of FAM134 paralogues in endoplasmic reticulum remodeling, ER‐phagy, and Collagen quality control
Cited by: 42
Author(s): Alessio Reggio, Viviana Buonomo, Rayene Berkane, Ramachandra M Bhaskara, Mariana Edith Tellechea, Ilaria Peluso, Elena Polishchuk, Giorgia Di Lorenzo, Carmine Cirillo, Marianna Esposito, Adeela Hussain, Antje K. Huebner, Christian A. Hübner, Carmine Settembre, Gerhard Hummer, Paolo Grumati, Alexandra Stolz
Software Mentions: 2
Published: over 5 years ago

Projects: cran: Andromeda

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Papers Mentioning Andromeda 1,724