cran: Andromeda | Projects | Ecosyste.ms: Papers

10.1016/j.redox.2019.101265

Oxygen-dependent bond formation with FIH regulates the activity of the client protein OTUB1
Cited by: 13
Author(s): Christina Pickel, Julia Günter, Amalia Ruiz-Serrano, Patrick Spielmann, Jacqueline-Alba Fabrizio, Witold Wolski, Daniel J. Peet, Roland H. Wenger, Carsten C. Scholz
Software Mentions: 2
Published: about 5 years ago

10.1038/sdata.2015.74

Hair-bundle proteomes of avian and mammalian inner-ear utricles
Cited by: 12
Author(s): Phillip A. Wilmarth, Jocelyn F. Krey, Jung Bum Shin, Dongseok Choi, Larry L. David, Peter G. Barr-Gillespie
Software Mentions: 2
Published: almost 9 years ago

10.3390/proteomes8020013

The Power of Three in Cannabis Shotgun Proteomics: Proteases, Databases and Search Engines
Cited by: 3
Author(s): Delphine Vincent, Keith W. Savin, Simone Rochfort, Germán Spangenberg
Software Mentions: 2
Published: over 4 years ago

10.1111/acel.12604

Biochemical isolation of myonuclei employed to define changes to the myonuclear proteome that occur with aging
Cited by: 25
Author(s): Alecia Cutler, Eric B. Dammer, Duc M. Doung, Nicholas T. Seyfried, Anita H. Corbett, Grace K. Pavlath
Software Mentions: 2
Published: over 7 years ago

10.1186/s12953-018-0139-3

In-depth proteomic analyses of Haliotis laevigata (greenlip abalone) nacre and prismatic organic shell matrix
Cited by: 25
Author(s): Karlheinz Mann, Nicolas Cerveau, Meike Gummich, Monika Fritz, Matthias Mann, Daniel J. Jackson
Software Mentions: 2
Published: over 6 years ago

10.1002/msb.134766

Acetylation dynamics and stoichiometry in <scp>S</scp> accharomyces cerevisiae 
Cited by: 216
Author(s): Brian T. Weinert, Vytautas Iešmantavičius, Tarek Moustafa, Christian Schölz, Sebastian Wagner, Christoph Magnes, Rudolf Zechner, Chunaram Choudhary
Software Mentions: 2
Published: almost 11 years ago

10.1186/s12934-019-1071-7

Comparative proteome analysis in an Escherichia coli CyDisCo strain identifies stress responses related to protein production, oxidative stress and accumulation of misfolded protein
Cited by: 9
Author(s): Isabel Guerrero Montero, Katarzyna Magdalena Dolata, Rabea Schlüter, Gilles Malherbe, Susanne Sievers, Daniela Zühlke, Thomas Sura, Emma Davé, Katharina Riedel, Colin Robinson
Software Mentions: 2
Published: almost 6 years ago

10.15252/msb.20209443

Proteomic patterns associated with response to breast cancer neoadjuvant treatment
Cited by: 31
Author(s): Anjana Shenoy, Nishanth Belugali Nataraj, Gili Perry, Fabricio Loayza‐Puch, Remco Nagel, I Marin, Nora Balint, Noa Bossel, A J Pavlovsky, Iris Barshack, Bella Kaufman, Reuven Agami, Maya Dadiani, Tamar Geiger
Software Mentions: 2
Published: about 4 years ago

10.1073/pnas.2007056117

Histone variants in archaea and the evolution of combinatorial chromatin complexity
Cited by: 27
Author(s): Kathryn M Stevens, Jacob B. Swadling, Antoine Hocher, Corinna Bang, Simonetta Gribaldo, Ruth A. Schmitz, Tobias Warnecke
Software Mentions: 2
Published: almost 4 years ago

10.1002/pmic.201400372

Computational phosphoproteomics: From identification to localization
Cited by: 23
Author(s): Dave C. H. Lee, Andrew R. Jones, Simon J. Hubbard
Software Mentions: 2
Published: almost 10 years ago

10.1371/journal.ppat.1008822

Shigella hijacks the exocyst to cluster macropinosomes for efficient vacuolar escape
Cited by: 20
Author(s): Yuen-Yan Chang, Virginie Stévenin, Magalie Duchateau, Quentin Giai Gianetto, Véronique Hourdel, Cristina S. Rodrigues, Mariette Matondo, Norbert Reiling, Jost Enninga
Software Mentions: 2
Published: about 4 years ago

10.1371/journal.ppat.1008841

Phosphorylation controls RNA binding and transcription by the influenza virus polymerase
Cited by: 13
Author(s): Anthony R. Dawson, Gary Wilson, Elyse C. Freiberger, Arindam Mondal, Joshua J. Coon, Andrew Mehle
Software Mentions: 2
Published: about 4 years ago

10.1371/journal.ppat.1008129

Organising the cell cycle in the absence of transcriptional control: Dynamic phosphorylation co-ordinates the Trypanosoma brucei cell cycle post-transcriptionally
Cited by: 31
Author(s): Corinna Benz, Michael D. Urbaniak
Software Mentions: 2
Published: almost 5 years ago

10.1186/s12916-019-1478-3

Profiling of the muscle-specific dystroglycan interactome reveals the role of Hippo signaling in muscular dystrophy and age-dependent muscle atrophy
Cited by: 13
Author(s): Andriy S. Yatsenko, Mariya M. Kucherenko, Yuanbin Xie, Dina Aweida, Henning Urlaub, Renate Scheibe, Shenhav Cohen, Halyna R. Shcherbata
Software Mentions: 2
Published: almost 5 years ago

10.1371/journal.ppat.1004835

Conserved Streptococcus pneumoniae Spirosomes Suggest a Single Type of Transformation Pilus in Competence
Cited by: 26
Author(s): Raphaël Laurenceau, Petya V. Krasteva, Amy Diallo, Sahra Ouarti, Magalie Duchateau, Christian Malosse, Julia Chamot‐Rooke, Rémi Fronzes
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.ppat.1004623

Characterization of the Mycobacterial Acyl-CoA Carboxylase Holo Complexes Reveals Their Functional Expansion into Amino Acid Catabolism
Cited by: 17
Author(s): M.T. Ehebauer, Michael Zimmermann, Arjen J. Jakobi, Elke E. Noens, Daniel Laubitz, B. Cichocki, Hédia Marrakchi, Marie‐Antoinette Lanéelle, Mamadou Daffé, Carsten Sachse, Andrzej Dziembowski, Uwe Sauer, Matthias Wilmanns
Software Mentions: 2
Published: almost 10 years ago

10.1371/journal.ppat.1006980

Viral targeting of TFIIB impairs de novo polymerase II recruitment and affects antiviral immunity
Cited by: 13
Author(s): Darya A. Haas, Arno Meiler, Katharina Geiger, Carola Vogt, Ellen Preuß, Georg Kochs, Andreas Pichlmair
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.ppat.1009580

A Ran-binding protein facilitates nuclear import of human papillomavirus type 16
Cited by: 10
Author(s): Kun-Yi Lai, Matteo Rizzato, Inci Aydin, Ruth Villalonga-Planells, Hannes C.A. Drexler, Mario Schelhaas
Software Mentions: 2
Published: over 3 years ago

10.15252/msb.20156423

Differential dynamics of the mammalian <scp>mRNA</scp> and protein expression response to misfolding stress
Cited by: 140
Author(s): Zhe Cheng, Guoshou Teo, Sabrina Krueger, Tara M. Rock, Hiromi W. L. Koh, Hyungwon Choi, Christine Vogel
Software Mentions: 2
Published: almost 9 years ago

10.1186/s12916-021-02071-9

Absolute quantitative proteomics using the total protein approach to identify novel clinical immunohistochemical markers in renal neoplasms
Cited by: 3
Author(s): Susana Jorge, José Luís Capelo, William A. LaFramboise, Swati Satturwar, Dimitrios Korentzelos, Sheldon Bastacky, Gabriela Quiroga‐Garza, Rajiv Dhir, Jacek R. Wiśniewski, Carlos Lodeiro, Hugo M. Santos
Software Mentions: 2
Published: about 3 years ago

10.1038/srep19926

Quantitative Analysis of Global Proteome and Lysine Acetylome Reveal the Differential Impacts of VPA and SAHA on HL60 Cells
Cited by: 30
Author(s): Xiaoyu Zhu, Xin Liu, Zhongyi Cheng, Jun Zhu, Lei Xu, Fengsong Wang, Wulin Qi, Jiawei Yan, Ning Liu, Zimin Sun, Huilan Liu, Xiaojun Peng, Yingchan Hao, Zheng Nan, Qiulian Wu
Software Mentions: 2
Published: almost 9 years ago

10.1038/srep21069

Comprehensive profiling of lysine acetylproteome analysis reveals diverse functions of lysine acetylation in common wheat
Cited by: 67
Author(s): Yumei Zhang, Limin Song, Wenxing Liang, Mu Peng, Shu Wang, Qingsong Lin
Software Mentions: 2
Published: almost 9 years ago

10.1038/srep29313

Proteome-wide analysis of lysine acetylation in the plant pathogen Botrytis cinerea
Cited by: 38
Author(s): Binna Lv, Qiwen Yang, Delong Li, Wenxing Liang, Limin Song
Software Mentions: 2
Published: over 8 years ago

10.3390/v9050115

Label-Free Quantitative Proteomic Analysis of Chitosan Oligosaccharide-Treated Rice Infected with Southern Rice Black-Streaked Dwarf Virus
Cited by: 70
Author(s): Anne Yuqing Yang, Lu Yu, Zhuo Chen, Shanxue Zhang, Jing Shi, Xiaozhen Zhao, Yuanyou Yang, Deyu Hu, Baoan Song
Software Mentions: 2
Published: over 7 years ago

10.1038/srep32481

On the saliva proteome of the Eastern European house mouse (Mus musculus musculus) focusing on sexual signalling and immunity
Cited by: 28
Author(s): Pavel Stopka, Barbora Kuntová, Petr Klempt, Leona Havrdová, Martina Černá, Romana Stopková
Software Mentions: 2
Published: about 8 years ago

10.3390/v11111023

Investigating the Cellular Transcriptomic Response Induced by the Makona Variant of Ebola Virus in Differentiated THP-1 Cells
Cited by: 5
Author(s): Andrew Bosworth, Stuart Dowall, Stuart D. Armstrong, Xuan Li, Xiaofeng Dong, Christine Bruce, Lisa F. P. Ng, Miles W. Carroll, Roger Hewson, Julian A. Hiscox
Software Mentions: 2
Published: about 5 years ago

10.15252/msb.202010125

Identification of covalent modifications regulating immune signaling complex composition and phenotype
Cited by: 5
Author(s): Annika Frauenstein, Stefan Ebner, Fynn M. Hansen, Ankit Sinha, Kshiti Phulphagar, Kirby N. Swatek, Daniel Hornburg, Matthias Mann, Felix Meissner
Software Mentions: 2
Published: over 3 years ago

10.15252/msb.20177663

A proteomic atlas of insulin signalling reveals tissue‐specific mechanisms of longevity assurance
Cited by: 41
Author(s): Luke S Tain, Robert Sehlke, Chirag Jain, Manopriya Chokkalingam, Nagarjuna Nagaraj, Paul Essers, Mark Rassner, Sebastian Grönke, Jenny Froelich, Christoph Dieterich, Matthias Mann, Nazif Alic, Andreas Beyer, Linda Partridge
Software Mentions: 2
Published: about 7 years ago

10.1038/s41598-017-02128-x

Quantitative Succinyl-Proteome Profiling of Camellia sinensis cv. ‘Anji Baicha’ During Periodic Albinism
Cited by: 35
Author(s): Yan-Xia Xu, Chenjia Shen, Jianqiang Ma, Wei Chen, Juan Mao, Yanyan Zhou, Liang Chen
Software Mentions: 2
Published: over 7 years ago

10.3390/metabo11070459

Lipoprotein Proteomics and Aortic Valve Transcriptomics Identify Biological Pathways Linking Lipoprotein(a) Levels to Aortic Stenosis
Cited by: 13
Author(s): Raphaëlle Bourgeois, Jérôme Bourgault, Audrey-Anne Després, Nicolas Perrot, Jakie Guertin, Arnaud Girard, Patricia L. Mitchell, Clarisse Gotti, Sylvie Bourassa, Corey A. Scipione, Nathalie Gaudreault, Michael B. Boffa, Marlys L. Koschinsky, Philippe Pîbarot, Arnaud Droit, Sébastien Thériault, Patrick Mathieu, Yohan Bossé, Benoît J. Arsenault
Software Mentions: 2
Published: over 3 years ago

10.1111/jcmm.12407

Establishment of a proteome profile and identification of molecular markers for mouse spermatogonial stem cells
Cited by: 27
Author(s): Quan Zhou, Yueshuai Guo, Bo Zheng, Binbin Shao, Min Jiang, Gaigai Wang, Tao Zhou, Lei Wang, Zuomin Zhou, Xuejiang Guo, Xiaoyan Huang
Software Mentions: 2
Published: about 10 years ago

10.1002/1878-0261.12463

Perineural invasion in pancreatic cancer: proteomic analysis and in vitro modelling
Cited by: 37
Author(s): Wasfi Alrawashdeh, Richard C. Jones, Laurent Dumartin, Tomasz P. Radon, Pedro R. Cutillas, Roger Feakins, Branko Dmitrović, İhsan Ekin Demir, Güralp O. Ceyhan, Tatjana Crnogorac‐Jurčević
Software Mentions: 2
Published: over 5 years ago

10.3390/toxins8040105

Quantitative Proteomic Analysis of Venoms from Russian Vipers of Pelias Group: Phospholipases A2 are the Main Venom Components
Cited by: 29
Author(s): Sergey I. Kovalchuk, Rustam H. Ziganshin, Vladislav G. Starkov, Victor I. Tsetlin, Yuri N. Utkin
Software Mentions: 2
Published: over 8 years ago

10.1128/mBio.03171-19

Listeria monocytogenes Exploits Mitochondrial Contact Site and Cristae Organizing System Complex Subunit Mic10 To Promote Mitochondrial Fragmentation and Cellular Infection
Cited by: 20
Author(s): Frédéric A. Carvalho, Anna Spier, Thibault Chaze, Mariette Matondo, Pascale Cossart, Fabrizia Stavru
Software Mentions: 2
Published: over 4 years ago

10.1111/acel.12780

Oxidation resistance 1 is a novel senolytic target
Cited by: 81
Author(s): Xin Zhang, Suping Zhang, Xingui Liu, Yingying Wang, Jianhui Chang, Xuan Zhang, Samuel G. Mackintosh, Alan J. Tackett, Yonghan He, Dongwen Lv, Rémi-Martin Laberge, Judith Campisi, Jianrong Wang, Guangrong Zheng, Daohong Zhou
Software Mentions: 2
Published: over 6 years ago

10.1242/jcs.154880

Tyrosine phosphorylation of WIP releases bound WASP and impairs podosome assembly in macrophages
Cited by: 15
Author(s): Vineetha Vijayakumar, James Monypenny, Xing Judy Chen, Laura M. Machesky, Sérgio Lilla, Adrian J. Thrasher, Inés M. Antón, Yolanda Calle, Gareth E. Jones
Software Mentions: 2
Published: almost 11 years ago

10.1242/jcs.257188

Ribosome quality control activity potentiates vaccinia virus protein synthesis during infection
Cited by: 17
Author(s): Elayanambi Sundaramoorthy, Andrew P Ryan, Amit Fulzele, Marilyn Leonard, Matthew D. Daugherty, Eric J. Bennett
Software Mentions: 2
Published: over 3 years ago

10.1371/journal.ppat.1009326

The pentose phosphate pathway constitutes a major metabolic hub in pathogenic Francisella
Cited by: 13
Author(s): Héloïse Rytter, Anne Jamet, Jason Ziveri, Elodie Ramond, Mathieu Coureuil, Pauline Lagouge-Roussey, Daniel Euphrasie, Fabiola Tros, Nicolas Goudin, Cérina Chhuon, Ivan Nemazanyy, Fabrício Edgar de Moraes, Carlos Alberto Labate, Ida Chiara Guerrera, Alain Charbit
Software Mentions: 2
Published: over 3 years ago

10.3390/md18120599

Biofunctionality of Enzymatically Derived Peptides from Codfish (Gadus morhua) Frame: Bulk In Vitro Properties, Quantitative Proteomics, and Bioinformatic Prediction
Cited by: 10
Author(s): Ali Jafarpour, Simon Gregersen, Rocio Marciel Gomes, Paolo Marcatili, Tobias Hegelund Olsen, Charlotte Jacobsen, Michael Toft Overgaard, Ann‐Dorit Moltke Sørensen
Software Mentions: 2
Published: almost 4 years ago

10.1186/s12870-016-0900-7

Modulation of plant growth in vivo and identification of kinase substrates using an analog-sensitive variant of CYCLIN-DEPENDENT KINASE A;1
Cited by: 13
Author(s): Hirofumi Harashima, Nico Dißmeyer, Philippe Hammann, Yuko Nomura, Katharina Kramer, Hirofumi Nakagami, Arp Schnittger
Software Mentions: 2
Published: about 8 years ago

10.1186/s12864-019-6151-x

Proteomic analysis showing the signaling pathways involved in the rhizome enlargement process in Nelumbo nucifera
Cited by: 16
Author(s): Dingding Cao, Rebecca Njeri Damaris, Yue Zhang, Meihui Liu, Ming Li, Pingfang Yang
Software Mentions: 2
Published: about 5 years ago

10.7717/peerj.9988

Analysis of the infant gut microbiome reveals metabolic functional roles associated with healthy infants and infants with atopic dermatitis using metaproteomics
Cited by: 10
Author(s): Amornthep Kingkaw, Massalin Nakphaichit, Narissara Suratannon, Sunee Nitisinprasert, Chantha Wongoutong, Pantipa Chatchatee, Sucheewin Krobthong, Sawanya Charoenlappanit, Sittiruk Roytrakul, Wanwipa Vongsangnak
Software Mentions: 2
Published: about 4 years ago

10.1016/j.molmet.2018.03.003

Epoxygenase inactivation exacerbates diet and aging-associated metabolic dysfunction resulting from impaired adipogenesis
Cited by: 15
Author(s): Antoni Olona, Ximena Terra, Jeong‐Hun Ko, Carme Grau-Bové, Montserrat Pinent, Anna Ardèvol, Ana García Díaz, Aida Moreno‐Moral, Matthew L. Edin, David Bishop‐Bailey, Darryl C. Zeldin, Timothy J. Aitman, Enrico Petretto, Mayte Blay, Jacques Behmoaras
Software Mentions: 2
Published: over 6 years ago

10.3390/md16020042

Proteomic Analyses of the Unexplored Sea Anemone Bunodactis verrucosa
Cited by: 17
Author(s): Dany Domínguez-Pérez, Alexandre Campos, Armando A. Rodríguez, Maria V. Turkina, Tiago Ribeiro, Hugo Osório, Vı́tor Vasconcelos, Agostinho Antunes
Software Mentions: 2
Published: almost 7 years ago

10.1083/jcb.201802151

Xrp1 genetically interacts with the ALS-associated FUS orthologue caz and mediates its toxicity
Cited by: 20
Author(s): Moushami Mallik, Marica Catinozzi, Clemens Hug, Li Zhang, Marina Wagner, Julia Bussmann, Jonas Bittern, Sina Mersmann, Christian Klämbt, Hannes C.A. Drexler, Martijn Huynen, Juan M. Vaquerizas, Erik Storkebaum
Software Mentions: 2
Published: about 6 years ago

10.1016/j.molmet.2019.04.006

Reduced insulin action in muscle of high fat diet rats over the diurnal cycle is not associated with defective insulin signaling
Cited by: 10
Author(s): Lewin Small, Amanda E. Brandon, Benjamin L. Parker, Vinita Deshpande, Azrah Samsudeen, Greg M. Kowalski, Jane Reznick, Donna Wilks, Elaine Preston, Clinton R. Bruce, David E. James, Nigel Turner, Gregory J. Cooney
Software Mentions: 2
Published: over 5 years ago

10.1007/s00401-021-02285-4

Age-associated insolubility of parkin in human midbrain is linked to redox balance and sequestration of reactive dopamine metabolites
Cited by: 26
Author(s): Jacqueline M. Tokarew, Daniel N. El-Kodsi, Nathalie A. Lengacher, Travis K. Fehr, Antoinette Nguyen, Bojan Shutinoski, Brian O’Nuallain, Ming Jin, Jasmine Khan, Andy Cheuk-Him Ng, Juan Li, Quan Jiang, Mei Zhang, Liqun Wang, Rajib Sengupta, Kathryn R. Barber, An Tran, Doo Soon Im, Steve Callaghan, David Park, Stéphanie Zandee, Xiajun Dong, Clemens R. Scherzer, Alexandre Prat, Eve C. Tsai, Masashi Takanashi, Nobutaka Hattori, Jennifer A. Chan, Luigi Zecca, Andrew B. West, Arne Holmgren, Lawrence G. Puente, Gary S. Shaw, Gergely Tóth, John Woulfe, Peggy Taylor, Julianna J. Tomlinson, Michael G. Schlossmacher
Software Mentions: 2
Published: over 3 years ago

10.1002/jcsm.12496

Skeletal muscle mTORC1 regulates neuromuscular junction stability
Cited by: 38
Author(s): Martina Baraldo, Alessia Geremia, Marco Pirazzini, Leonardo Nogara, Francesca Solagna, Clara Türk, Hendrik Nolte, Vanina Romanello, Aram Megighian, Simona Boncompagni, Marcus Krüger, Marco Sandri, Bert Blaauw
Software Mentions: 2
Published: about 5 years ago

10.1074/jbc.RA120.015468

PFN2 and NAA80 cooperate to efficiently acetylate the N-terminus of actin
Cited by: 16
Author(s): Rasmus Ree, L. A. P. De Kind, Anna Kaziales, Sylvia Varland, Minglu Dai, Klaus Richter, Adrian Drazic, Thomas Arnesen
Software Mentions: 2
Published: almost 4 years ago

10.3390/molecules26082125

Glycan-Induced Protein Dynamics in Human Norovirus P Dimers Depend on Virus Strain and Deamidation Status
Cited by: 10
Author(s): Jasmin Dülfer, Hao Yan, Maxim N. Brodmerkel, Robert Creutznacher, Álvaro Mallagaray, Thomas Peters, Carl Caleman, Erik Marklund, Charlotte Uetrecht
Software Mentions: 2
Published: over 3 years ago

10.1074/jbc.M115.700930

The Rab-binding Profiles of Bacterial Virulence Factors during Infection
Cited by: 12
Author(s): Ernest C. So, Gunnar N. Schroeder, Danielle Carson, Corinna Mattheis, Aurélie Mousnier, Malgorzata Broncel, Edward W. Tate, Gad Frankel
Software Mentions: 2
Published: over 8 years ago

10.1074/jbc.RA118.003351

PROMIS, global analysis of PROtein–metabolite interactions using size separation in Arabidopsis thaliana
Cited by: 49
Author(s): Daniel Veyel, Ewelina Sokołowska, Juan C. Moreno, Sylwia Kierszniowska, Justyna Cichon, Izabela Wojciechowska, Marcin Luzarowski, Monika Kosmacz, Jagoda Szlachetko, Michał Górka, Michaël Méret, Alexander Graf, Etienne H. Meyer, Lothar Willmitzer
Software Mentions: 2
Published: over 6 years ago

10.26508/lsa.202101084

Quantitative proteomics identifies PTP1B as modulator of B cell antigen receptor signaling
Cited by: 0
Author(s): Jennifer Schwarz, Lorenz Grundmann, Thomas Kokot, Kathrin Kläsener, Sandra Fotteler, Dávid Medgyesi, Maja Köhn, Michael Reth, Bettina Warscheid
Software Mentions: 2
Published: about 3 years ago

10.1172/jci.insight.143474

Identification of Wee1 as a target in combination with avapritinib for gastrointestinal stromal tumor treatment
Cited by: 5
Author(s): Shuai Ye, Dinara Sharipova, Marya Kozinova, Lilli Klug, Jimson D’Souza, Martin G. Belinsky, Katherine J. Johnson, Margret B. Einarson, Karthik Devarajan, Yan Zhou, Samuel Litwin, Michael C. Heinrich, Ronald P. DeMatteo, Margaret von Mehren, James S. Duncan, Lori Rink
Software Mentions: 2
Published: almost 4 years ago

10.1074/jbc.M115.645283

Organization of Subunits in the Membrane Domain of the Bovine F-ATPase Revealed by Covalent Cross-linking
Cited by: 38
Author(s): Jennifer Lee, Shuzhe Ding, Thomas B Walpole, Andrew N Holding, M.G. Montgomery, Ian M. Fearnley, John E. Walker
Software Mentions: 2
Published: over 9 years ago

10.1128/mSphere.00792-20

Phosphorylation of Toxoplasma gondii Secreted Proteins during Acute and Chronic Stages of Infection
Cited by: 6
Author(s): Joanna C. Young, Malgorzata Broncel, Helena Teague, Mark Russell, Olivia L. McGovern, Matthew J. Renshaw, David Frith, Ambrosius P. Snijders, Lucy Collinson, Vern B. Carruthers, Sarah E. Ewald, Moritz Treeck
Software Mentions: 2
Published: about 4 years ago

10.26508/lsa.201900603

Phenotypic proteomic profiling identifies a landscape of targets for circadian clock–modulating compounds
Cited by: 13
Author(s): Ray S, Radosław Lach, Kate J Heesom, Utham K. Valekunja, Vesela Encheva, Ambrosius P. Snijders, Akhilesh B. Reddy
Software Mentions: 2
Published: almost 5 years ago

10.26508/lsa.201900380

Cellular response upon proliferation in the presence of an active mitotic checkpoint
Cited by: 2
Author(s): Andrea Corno, Elena Chiroli, Fridolin Groß, Claudio Vernieri, Vittoria Matafora, Stefano Maffini, Marco Cosentino Lagomarsino, Ángela Bachi, Andrea Ciliberto
Software Mentions: 2
Published: over 5 years ago

10.1186/s12864-020-07194-6

The expression of the acarbose biosynthesis gene cluster in Actinoplanes sp. SE50/110 is dependent on the growth phase
Cited by: 3
Author(s): Julian Droste, Vera Ortseifen, Lena Schaffert, Marcus Persicke, Susanne Schneiker-Bekel, Alfred Pühler, Jörn Kalinowski
Software Mentions: 2
Published: almost 4 years ago

10.1186/s13059-018-1533-y

Dynamics and functional interplay of histone lysine butyrylation, crotonylation, and acetylation in rice under starvation and submergence
Cited by: 70
Author(s): Yue Lu, Qiutao Xu, Yuan Liu, Yue Yu, Zhongyi Cheng, Yu Zhao, Dao‐Xiu Zhou
Software Mentions: 2
Published: about 6 years ago

10.1016/j.gpb.2020.06.012

Screening of Potential Biomarkers for Gastric Cancer with Diagnostic Value Using Label-free Global Proteome Analysis
Cited by: 12
Author(s): Yongxi Song, Jun Wang, Jingwei Sun, Xiaowan Chen, Jinxin Shi, Zhonghua Wu, Dehao Yu, Fei Zhang, Zhenning Wang
Software Mentions: 2
Published: almost 4 years ago

10.1074/mcp.RA117.000315

Compartment-resolved Proteomic Analysis of Mouse Aorta during Atherosclerotic Plaque Formation Reveals Osteoclast-specific Protein Expression
Cited by: 27
Author(s): Michael Wierer, Matthias Prestel, Herbert B. Schiller, Guangyao Yan, Christoph Schaab, Sepiede Azghandi, Julia Werner, Thorsten Kessler, Rainer Malik, Marta Murgia, Zouhair Aherrahrou, Heribert Schunkert, Martin Dichgans, Matthias Mann
Software Mentions: 2
Published: almost 7 years ago

10.3389/fpls.2021.716114

Quantitative Proteomics and Relative Enzymatic Activities Reveal Different Mechanisms in Two Peanut Cultivars (Arachis hypogaea L.) Under Waterlogging Conditions
Cited by: 5
Author(s): Dengwang Liu, Jicheng Zhan, Zinan Luo, Ningbo Zeng, Wei Zhang, Hao Zhang, Li Lin
Software Mentions: 2
Published: over 3 years ago

10.3389/fpls.2020.625507

Transcriptomic and Proteomic Analyses of Nepenthes ampullaria and Nepenthes rafflesiana Reveal Parental Molecular Expression in the Pitchers of Their Hybrid, Nepenthes × hookeriana
Cited by: 11
Author(s): Muhammad Mu′izzuddin Zulkapli, Nur Syatila Ab Ghani, Tiew Yik Ting, Wan Mohd Aizat, Hoe-Han Goh
Software Mentions: 2
Published: almost 4 years ago

10.7554/eLife.45863

Endothelial EphB4 maintains vascular integrity and transport function in adult heart
Cited by: 29
Author(s): Guillermo Luxán, Jonas Stewen, Noèlia Díaz, Katsuhiro Kato, Sathish Kumar Maney, Anusha Aravamudhan, Frank Berkenfeld, Nina Nagelmann, Hannes C.A. Drexler, Dagmar Zeuschner, Cornelius Faber, Hermann Schillers, Sven Hermann, John Wiseman, Juan M. Vaquerizas, Mara E. Pitulescu, Ralf H. Adams
Software Mentions: 2
Published: almost 5 years ago

10.1371/journal.pbio.2004194

Quantitative proteomic characterization and comparison of T helper 17 and induced regulatory T cells
Cited by: 17
Author(s): Imran Mohammad, Kari Nousiainen, Santosh D. Bhosale, Inna Starskaia, Robert Moulder, Anne Rokka, Fang Cheng, Ponnuswamy Mohanasundaram, John E. Eriksson, David R. Goodlett, Harri Lähdesmäki, Zhi Chen
Software Mentions: 2
Published: over 6 years ago

10.3389/fpls.2018.00056

Auxin-to-Gibberellin Ratio as a Signal for Light Intensity and Quality in Regulating Soybean Growth and Matter Partitioning
Cited by: 53
Author(s): Feng Yang, Yuanfang Fan, Xiaoling Wu, Yajiao Cheng, Qinlin Liu, Lingyang Feng, Junxu Chen, Zhong Lin Wang, Xiaochun Wang, Taiwen Yong, Weiguo Liu, Jiang Liu, Junbo Du, Kai Shu, Wenyu Yang
Software Mentions: 2
Published: almost 7 years ago

10.3389/fpls.2018.00775

Using RT-qPCR, Proteomics, and Microscopy to Unravel the Spatio-Temporal Expression and Subcellular Localization of Hordoindolines Across Development in Barley Endosperm
Cited by: 12
Author(s): Azita Shabrangy, Valentin Roustan, Siegfried Reipert, Marieluise Weidinger, Pierre-Jean Roustan, Eva Stöger, Wolfram Weckwerth, Verena Ibl
Software Mentions: 2
Published: over 6 years ago

10.1002/glia.24032

Regulation of aquaporin‐4 expression in the central nervous system investigated using M23‐AQP4 null mouse
Cited by: 10
Author(s): Francesco Pisani, Laura Simone, Maria Grazia Mola, Manuela De Bellis, Antonio Frigeri, Grazia Paola Nicchia, María Svelto
Software Mentions: 2
Published: over 3 years ago

10.1074/mcp.M115.048090

Characterization of the Tyrosine Kinase-Regulated Proteome in Breast Cancer by Combined use of RNA interference (RNAi) and Stable Isotope Labeling with Amino Acids in Cell Culture (SILAC) Quantitative Proteomics
Cited by: 15
Author(s): Justin Stebbing, Hua Zhang, Yang Xu, Arnhild Grothey, Paul Ajuh, Nicos Angelopoulos, Georgios Giamas
Software Mentions: 2
Published: about 9 years ago

10.1074/mcp.RA118.000982

N-terminal Acetylation Levels Are Maintained During Acetyl-CoA Deficiency in Saccharomyces cerevisiae
Cited by: 25
Author(s): Sylvia Varland, Henriette Aksnes, Fedor Kryuchkov, Francis Impens, Delphi Van Haver, Veronique Jonckheere, Mathias Ziegler, Kris Gevaert, Petra Van Damme, Thomas Arnesen
Software Mentions: 2
Published: almost 6 years ago

10.3390/cancers13143618

TRAF6 Phosphorylation Prevents Its Autophagic Degradation and Re-Shapes LPS-Triggered Signaling Networks
Cited by: 3
Author(s): Julia Busch, Rita Moreno, Laureano de la Vega, Vera V. Saul, Susanne Bacher, Felix von Zweydorf, Marius Ueffing, Axel Weber, Christian Johannes Gloeckner, Uwe Linne, Michael Kracht, M. Lienhard Schmitz
Software Mentions: 2
Published: over 3 years ago

10.1016/j.molcel.2019.08.005

Polyamines Control eIF5A Hypusination, TFEB Translation, and Autophagy to Reverse B Cell Senescence
Cited by: 189
Author(s): Hanlin Zhang, Ghada Alsaleh, Jack Feltham, Yizhe Sun, Gennaro Napolitano, Thomas Riffelmacher, P. David Charles, Lisa Frau, Philip Hublitz, Zhanru Yu, Shabaz Mohammed, Andrea Ballabio, Stefan Balabanov, Jane Mellor, Anna Katharina Simon
Software Mentions: 2
Published: about 5 years ago

10.1371/journal.pgen.1009583

RIOK2 phosphorylation by RSK promotes synthesis of the human small ribosomal subunit
Cited by: 6
Author(s): Emilie L. Cerezo, Thibault Houlès, Oriane Lié, Marie-Kerguelen Sarthou, Charlotte Audoynaud, Geneviève Lavoie, Maral Halladjian, Sylvain Cantaloube, Carine Froment, Odile Burlet‐Schiltz, Y. Henry, Philippe P. Roux, Anthony K. Henras, Yves Roméo
Software Mentions: 2
Published: over 3 years ago

10.3389/fimmu.2021.702359

PPE38-Secretion-Dependent Proteins of M. tuberculosis Alter NF-kB Signalling and Inflammatory Responses in Macrophages
Cited by: 3
Author(s): James Gallant, Tiaan Heunis, Caroline G. G. Beltran, Karin Schildermans, Sven C. M. Bruijns, Inge Mertens, Wilbert Bitter, Samantha L. Sampson
Software Mentions: 2
Published: over 3 years ago

10.1186/s40170-019-0194-y

CHCHD4 confers metabolic vulnerabilities to tumour cells through its control of the mitochondrial respiratory chain
Cited by: 14
Author(s): Luke W. Thomas, Jenna M. Stephen, Cinzia Esposito, Simon Hoer, Robin Antrobus, Alaa A. Ahmed, Hasan Al-Habib, Margaret Ashcroft
Software Mentions: 2
Published: over 5 years ago

10.1074/mcp.TIR117.000516

Stable Isotope Dynamic Labeling of Secretomes (SIDLS) Identifies Authentic Secretory Proteins Released by Cancer and Stromal Cells
Cited by: 8
Author(s): Dean E. Hammond, J. Dinesh Kumar, Lorna Raymond, Deborah M. Simpson, Robert J. Beynon, Graham J. Dockray, Andrea Varró
Software Mentions: 2
Published: about 6 years ago

10.3389/fgene.2020.616435

Multi-Omics Analysis of Diabetic Nephropathy Reveals Potential New Mechanisms and Drug Targets
Cited by: 16
Author(s): Qian Sha, Jinxiu Lyu, Meng Zhao, Haijuan Li, Mengzhe Guo, Qiang Sun
Software Mentions: 2
Published: almost 4 years ago

10.3389/fendo.2019.00872

Dysregulation of the Mitochondrial Proteome Occurs in Mice Lacking Adiponectin Receptor 1
Cited by: 7
Author(s): Mark E Pepin, Christoph Koentges, Katharina Pfeil, Johannes Gollmer, Sophia Kersting, Sebastian Wiese, Michael M. Hoffmann, Katja E. Odening, Constantin von zur Mühlen, Philipp Diehl, Peter Stachon, Dennis Wolf, Adam R. Wende, Christoph Bode, Andreas Zirlik, Heiko Bugger
Software Mentions: 2
Published: almost 5 years ago

10.1128/AEM.02091-17

Multi-omics Reveals the Lifestyle of the Acidophilic, Mineral-Oxidizing Model Species Leptospirillum ferriphilum T
Cited by: 64
Author(s): Stephan Christel, Malte Herold, Sören Bellenberg, Mohamed El Hajjami, Antoine Buetti‐Dinh, Igor V. Pivkin, Wolfgang Sand, Paul Wilmes, Ansgar Poetsch, Mark Dopson
Software Mentions: 2
Published: almost 7 years ago

10.3389/fendo.2019.00674

Glucocorticoid Treatment Leads to Aberrant Ion and Macromolecular Transport in Regenerating Zebrafish Fins
Cited by: 18
Author(s): Johannes R. Schmidt, Karina Geurtzen, Martin von Bergen, Kristin Schubert, Franziska Knopf
Software Mentions: 2
Published: about 5 years ago

10.3389/fgene.2020.551495

Systematic Identification of Hub Genes in Placenta Accreta Spectrum Based on Integrated Transcriptomic and Proteomic Analysis
Cited by: 5
Author(s): Bingnan Chen, Di Wang, Yue Bian, Jiapo Li, Tian Yang, Na Li, Chong Qiao
Software Mentions: 2
Published: about 4 years ago

10.3389/fpls.2021.635550

SP3 Protocol for Proteomic Plant Sample Preparation Prior LC-MS/MS
Cited by: 19
Author(s): Kamil Mikulášek, Hana Konečná, David Potěšil, Renata Holánková, Jan Havliš, Zbyněk Zdráhal
Software Mentions: 2
Published: over 3 years ago

10.3389/fcimb.2020.00443

Investigating Non-sterilizing Cure in TB Patients at the End of Successful Anti-TB Therapy
Cited by: 20
Author(s): Caroline G. G. Beltran, Tiaan Heunis, James Gallant, Rouxjeane Venter, Nelita du Plessis, André G. Loxton, Matthias Trost, Jill Winter, Stephanus T. Malherbe, Bavesh D Kana, Gerhard Walzl
Software Mentions: 2
Published: about 4 years ago

10.3390/cancers13061472

Persistent Inflammatory Stimulation Drives the Conversion of MSCs to Inflammatory CAFs That Promote Pro-Metastatic Characteristics in Breast Cancer Cells
Cited by: 17
Author(s): Linor Rubinstein-Achiasaf, Dina Morein, Hagar Ben-Yaakov, Yulia Liubomirski, Tsipi Meshel, Eti Elbaz, Orly Dorot, Edward Pichinuk, Michael Gershovits, Miguel Weil, Adit Ben‐Baruch
Software Mentions: 2
Published: over 3 years ago

10.3389/fcimb.2018.00145

The Loss of Expression of a Single Type 3 Effector (CT622) Strongly Reduces Chlamydia trachomatis Infectivity and Growth
Cited by: 14
Author(s): Mathilde M. Cossé, Michael L. Barta, Derek J. Fisher, Lena K. Oesterlin, Béatrice Niragire, Stéphanie Perrinet, Gaël A. Millot, P. Scott Hefty, Agathe Subtil
Software Mentions: 2
Published: over 6 years ago

10.1186/s12864-019-6058-6

A homology-guided, genome-based proteome for improved proteomics in the alloploid Nicotiana benthamiana
Cited by: 40
Author(s): Jiorgos Kourelis, Farnusch Kaschani, Friederike Grosse‐Holz, Felix Homma, Markus Kaiser, Renier A. L. van der Hoorn
Software Mentions: 2
Published: about 5 years ago

10.1186/s40478-019-0847-7

Comparative profiling of the synaptic proteome from Alzheimer’s disease patients with focus on the APOE genotype
Cited by: 50
Author(s): Raphael Hesse, Maica Llavero Hurtado, Rosemary J. Jackson, Samantha L. Eaton, Abigail G. Herrmann, Martí Colom‐Cadena, Makis Tzioras, Declan King, Jamie Rose, Jane Tulloch, Chris-Anne McKenzie, Colin Smith, Christopher M. Henstridge, Douglas J. Lamont, Thomas M. Wishart, Tara L. Spires‐Jones
Software Mentions: 2
Published: almost 5 years ago

10.3389/fcell.2020.544043

Comparative Transcriptional Profiling of Motor Neuron Disorder-Associated Genes in Various Human Cell Culture Models
Cited by: 8
Author(s): Stefan Hauser, Stefanie Schuster, Elena Heuten, Philip Höflinger, Jakob Admard, Yvonne Schelling, Ana Velić, Boris Maček, Stephan Ossowski, Lüdger Schöls
Software Mentions: 2
Published: about 4 years ago

10.1016/j.joca.2021.02.008

Circadian time series proteomics reveals daily dynamics in cartilage physiology
Cited by: 15
Author(s): Michal Dudek, Constanza Angelucci, Dharshika Pathiranage, Ping Wang, Venkatesh Mallikarjun, Craig Lawless, Joe Swift, Karl E. Kadler, Ray Boot-Handford, Judith A. Hoyland, Shireen R. Lamandé, John F. Bateman, Qing‐Jun Meng
Software Mentions: 2
Published: over 3 years ago

10.1016/j.mcpro.2021.100119

Identification of Endogenous Kinase Substrates by Proximity Labeling Combined with Kinase Perturbation and Phosphorylation Motifs
Cited by: 16
Author(s): Tomoya Niinae, Koshi Imami, Naoyuki Sugiyama, Yasushi Ishihama
Software Mentions: 2
Published: almost 4 years ago

10.1074/mcp.RA120.002359

Plasma Proteomes Can Be Reidentifiable and Potentially Contain Personally Sensitive and Incidental Findings
Cited by: 17
Author(s): Philipp E. Geyer, Sebastian Porsdam Mann, Peter V. Treit, Matthias Mann
Software Mentions: 2
Published: almost 4 years ago

10.3389/fbioe.2018.00019

Phosphoproteome of the Oleaginous Green Alga, Chlorella vulgaris UTEX 395, under Nitrogen-Replete and -Deplete Conditions
Cited by: 1
Author(s): Michael T. Guarnieri, Alida T. Gerritsen, Calvin A. Henard, Eric P. Knoshaug
Software Mentions: 2
Published: over 6 years ago

10.1074/mcp.M115.053926

Novel Molecular Insights into Classical and Alternative Activation States of Microglia as Revealed by Stable Isotope Labeling by Amino Acids in Cell Culture (SILAC)-based Proteomics*
Cited by: 45
Author(s): Harris Bell-Temin, Ashley E. Culver‐Cochran, Dale Chaput, Christina M. Carlson, Melanie N. Kuehl, Brant R. Burkhardt, Paula C. Bickford, Bin Liu, Stanley M. Stevens
Software Mentions: 2
Published: almost 9 years ago

10.3390/foods9091150

Living the Sweet Life: How Liquorilactobacillus hordei TMW 1.1822 Changes Its Behavior in the Presence of Sucrose in Comparison to Glucose
Cited by: 7
Author(s): Julia Bechtner, Christina Ludwig, Michael Kiening, Frank Jakob, Rudi F. Vogel
Software Mentions: 2
Published: over 4 years ago

10.1186/s12864-018-4517-0

Liver proteome response of pre-harvest Atlantic salmon following exposure to elevated temperature
Cited by: 37
Author(s): Waldo G. Nuez-Ortín, Chris Carter, Peter D. Nichols, Ira Cooke, Richard Wilson
Software Mentions: 2
Published: almost 7 years ago

10.3390/foods9091147

An Artificial Intelligence Characterised Functional Ingredient, Derived from Rice, Inhibits TNF-α and Significantly Improves Physical Strength in an Inflammaging Population
Cited by: 13
Author(s): Kathy Kennedy, Brian Keogh, Cyril Lopez, Alessandro Adelfio, Brendan Molloy, Alish Kerr, Audrey Wall, Gaël Jalowicki, Thérèse A. Holton, Nora Khaldi
Software Mentions: 2
Published: over 4 years ago

10.3389/fncel.2021.662035

Integrative Cell Type-Specific Multi-Omics Approaches Reveal Impaired Programs of Glial Cell Differentiation in Mouse Culture Models of DM1
Cited by: 10
Author(s): Anchel González-Barriga, Louison Lallemant, Diana Mihaela Dincã, Sandra Bráz, Hélène Polvèche, Paul Magneron, Cédric Pionneau, Aline Huguet-Lachon, Jean‐Baptiste Claude, Cérina Chhuon, Ida Chiara Guerrera, Cyril F. Bourgeois, Didier Auboeuf, Geneviève Gourdon, Mário Gomes‐Pereira
Software Mentions: 2
Published: over 3 years ago

10.1109/ACCESS.2020.3047588

Methods for Proteogenomics Data Analysis, Challenges, and Scalability Bottlenecks: A Survey
Cited by: 12
Author(s): Muhammad Usman Tariq, Muhammad Haseeb, Mohammed Aledhari, Rehma Razzak, Reza M. Parizi, Fahad Saeed
Software Mentions: 2
Published: almost 4 years ago

10.1038/s41426-018-0210-2

Associating H2O2-and NO-related changes in the proteome of Mycobacterium smegmatis with enhanced survival in macrophage
Cited by: 9
Author(s): Naadir Ganief, Jessica Sjouerman, Claudia Albeldas, Kehilwe C. Nakedi, Clemens Hermann, Bridget Calder, Jonathan M. Blackburn, Nelson C. Soares
Software Mentions: 2
Published: almost 6 years ago

Projects: cran: Andromeda

Papers Mentioning Andromeda 1,724