cran: Andromeda | Projects | Ecosyste.ms: Papers

10.1016/j.joca.2021.02.008

Circadian time series proteomics reveals daily dynamics in cartilage physiology
Cited by: 15
Author(s): Michal Dudek, Constanza Angelucci, Dharshika Pathiranage, Ping Wang, Venkatesh Mallikarjun, Craig Lawless, Joe Swift, Karl E. Kadler, Ray Boot-Handford, Judith A. Hoyland, Shireen R. Lamandé, John F. Bateman, Qing‐Jun Meng
Software Mentions: 2
Published: about 5 years ago

10.1186/s12967-016-0907-8

Cathepsin A inhibition attenuates myocardial infarction-induced heart failure on the functional and proteomic levels
Cited by: 20
Author(s): Agnese Petrera, Johann Gassenhuber, Sven Ruf, Deepika Gunasekaran, Jennifer S. Esser, Jasmin H. Shahinian, Thomas Hübschle, Hartmut Rütten, Thorsten Sadowski, Oliver Schilling
Software Mentions: 2
Published: about 10 years ago

10.1111/jnc.14845

NYX‐2925 induces metabotropicN‐methyl‐<scp>d</scp>‐aspartate receptor (NMDAR) signaling that enhances synaptic NMDAR and α‐amino‐3‐hydroxy‐5‐methyl‐4‐isoxazolepropionic acid receptor
Cited by: 6
Author(s): M. Scott Bowers, Luisa P. Cacheaux, Srishti U. Sahu, Matthew Schmidt, Joseph A. Sennello, Katherine Leaderbrand, M. Amin Khan, Roger A. Kroes, Joseph R. Moskal
Software Mentions: 2
Published: over 6 years ago

10.1074/mcp.RA120.002273

Thermal Proteome Profiling in Zebrafish Reveals Effects of Napabucasin on Retinoic Acid Metabolism
Cited by: 7
Author(s): Niels Leijten, Petra A Bakker, Herman P. Spaink, Jeroen den Hertog, Simone Lemeer
Software Mentions: 2
Published: over 5 years ago

10.3390/biom10111581

The Proteasome Activators Blm10/PA200 Enhance the Proteasomal Degradation of N-Terminal Huntingtin
Cited by: 7
Author(s): Azzam Aladdin, Yanhua Yao, Ciyu Yang, Günther Kahlert, Marvi Ghani, Nikolett Király, Anita Boratkó, Karen Uray, Gunnar Dittmar, Krisztina Tar
Software Mentions: 2
Published: over 5 years ago

10.3390/ijms22115619

Molecular Mechanisms of Fetal Tendon Regeneration Versus Adult Fibrous Repair
Cited by: 11
Author(s): Iris Ribitsch, Andrea Bileck, Alexander D. Aldoshin, Maciej M. Kańduła, Rupert L. Mayer, Monika Egerbacher, Simone Gabner, Ulrike Auer, Sinan Gültekin, Johann Huber, David P. Kreil, Christopher Gerner, Florien Jenner
Software Mentions: 2
Published: about 5 years ago

10.3390/ijms22073690

N-Terminal Acetyltransferase Naa40p Whereabouts Put into N-Terminal Proteoform Perspective
Cited by: 10
Author(s): Veronique Jonckheere, Petra Van Damme
Software Mentions: 2
Published: about 5 years ago

10.3390/ijms22073740

RAD51 Inhibition Induces R-Loop Formation in Early G1 Phase of the Cell Cycle
Cited by: 5
Author(s): Zuzana Naščáková, Barbora Boleslavska, Václav Urban, Anna Oravetzova, Edita Vlachova, Pavel Janscak, Jana Dobrovolná
Software Mentions: 2
Published: about 5 years ago

10.1155/2019/5879616

Circulating Cancer Stem Cell-Derived Extracellular Vesicles as a Novel Biomarker for Clinical Outcome Evaluation
Cited by: 31
Author(s): Davide Brocco, Paola Lanuti, Pasquale Simeone, Giuseppina Bologna, Damiana Pieragostino, Maria Concetta Cufaro, Vincenzo Graziano, Marta Peri, Pietro Di Marino, Michele De Tursi, Antonino Grassadonia, Ilario Giovanni Rapposelli, Laura Pierdomenico, Eva Ercolino, Fausta Ciccocioppo, Piero Del Boccio, Marco Marchisio, Clara Natoli, Sebastianó Miscia, Nicola Tinari
Software Mentions: 2
Published: over 6 years ago

10.3390/ijms21249706

Distinct Preflowering Drought Tolerance Strategies of Sorghum bicolor Genotype RTx430 Revealed by Subcellular Protein Profiling
Cited by: 9
Author(s): Aaron J. Ogden, Shadan Abdali, Kristin Engbrecht, Mowei Zhou, Pubudu Handakumbura
Software Mentions: 2
Published: over 5 years ago

10.3390/ijms21239043

Multi-Omics Integration Highlights the Role of Ubiquitination in CCl4-Induced Liver Fibrosis
Cited by: 9
Author(s): María Mercado-Gómez, Fernando Lopitz‐Otsoa, Mikel Azkargorta, Marina Serrano‐Maciá, Sofía Lachiondo‐Ortega, Naroa Goikoetxea‐Usandizaga, Rubén Rodríguez-Agudo, David Fernández‐Ramos, Maider Bizkarguenaga, Virginia Gutiérrez‐de Juan, Benoît Lectez, Kerman Aloria, Jesús M. Arizmendi, Jorge Simón, Cristina Alonso, Juan José Lozano, Matías A. Ávila, Jesús M. Bañales, J. J. G. Marin, Naiara Beraza, José M. Mato, Félix Elortza, Rosa Barrio, James D. Sutherland, Ugo Mayor, María Luz Martínez‐Chantar, Teresa C. Delgado
Software Mentions: 2
Published: over 5 years ago

10.3390/ijms22010428

Salinity Effects on Guard Cell Proteome in Chenopodium quinoa
Cited by: 19
Author(s): Fatemeh Rasouli, Ali Kiani‐Pouya, Lana Shabala, Leiting Li, Ayesha Tahir, Min Yu, Rainer Hedrich, Zhong‐Hua Chen, Richard Wilson, Heng Zhang, Sergey Shabala
Software Mentions: 2
Published: over 5 years ago

10.3390/ijms21176153

The Structure of Clostridioides difficile SecA2 ATPase Exposes Regions Responsible for Differential Target Recognition of the SecA1 and SecA2-Dependent Systems
Cited by: 0
Author(s): Nataša Lindič, Jure Loboda, Aleksandra Usenik, Robert Vidmar, Dušan Turk
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.pone.0253364

Biochemical characterization of protease activity of Nsp3 from SARS-CoV-2 and its inhibition by nanobodies
Cited by: 44
Author(s): Lee A. Armstrong, Sven M. Lange, Virginia Dee Cesare, S. Matthews, Raja Sekhar Nirujogi, Isobel Cole, Anthony G. Hope, Fraser Cunningham, Rachel Toth, Rukmini Mukherjee, Denisa Bojkova, Franz S Gruber, David W. Gray, Paul G. Wyatt, Jindrich Cinatl, Ivan Đikić, Paul Davies, Yogesh Kulathu
Software Mentions: 2
Published: almost 5 years ago

10.1186/1471-2164-14-906

The neuropeptide complement of the marine annelid Platynereis dumerilii
Cited by: 117
Author(s): Markus Conzelmann, Elizabeth A. Williams, Karsten Krug, Mirita Franz‐Wachtel, Boris Maček, Gáspár Jékely
Software Mentions: 2
Published: over 13 years ago

10.3390/ijms21072331

Sugar Beet (Beta vulgaris) Guard Cells Responses to Salinity Stress: A Proteomic Analysis
Cited by: 15
Author(s): Fatemeh Rasouli, Ali Kiani‐Pouya, Leiting Li, Heng Zhang, Zhong‐Hua Chen, Rainer Hedrich, Richard Wilson, Sergey Shabala
Software Mentions: 2
Published: about 6 years ago

10.1002/advs.202004846

SPOP and OTUD7A Control EWS–FLI1 Protein Stability to Govern Ewing Sarcoma Growth
Cited by: 23
Author(s): Siyuan Su, Jianfeng Chen, Yao Jiang, Ying Wang, T. PanduRanga Vital, Jiaming Zhang, Christian Laggner, Kong T. Nguyen, Zhen-Gang Zhu, Alex W. Prevatte, Nelson W. Barker, Laura E. Herring, Ian J. Davis, Pengda Liu
Software Mentions: 2
Published: about 5 years ago

10.3390/ijms21051659

The ArathEULS3 Lectin Ends up in Stress Granules and Can Follow an Unconventional Route for Secretion
Cited by: 13
Author(s): Malgorzata Dubiel, Tibo De Coninck, Vinicius Jose Da Silva Osterne, Isabel Verbeke, Daniël Van Damme, Guy Smagghe, Els J.M. Van Damme
Software Mentions: 2
Published: over 6 years ago

10.3390/ijms20235911

Global Proteomic Analysis Reveals Widespread Lysine Succinylation in Rice Seedlings
Cited by: 10
Author(s): Kai Zhang, Ye Xiong, Wenxian Sun, Guo‐Liang Wang, Wende Liu
Software Mentions: 2
Published: over 6 years ago

10.1186/s12864-019-6344-3

Comparison of the molecular and cellular phenotypes of common mouse syngeneic models with human tumors
Cited by: 87
Author(s): Wenyan Zhong, Jeremy S. Myers, Fang Wang, Kai Wang, Justin Lucas, Edward Rosfjord, Judy Lucas, Andrea T. Hooper, Sharon Yang, Lu Anna Lemon, Magali Guffroy, Chad May, Jadwiga Bienkowska, Paul A. Rejto
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0211128

Tolerance and dose-response assessment of subchronic dietary ethoxyquin exposure in Atlantic salmon (Salmo salar L.)
Cited by: 6
Author(s): A. Bernhard, Josef Daniel Rasinger, Mónica B. Betancor, M. J. Caballero, Marc H.G. Berntssen, Anne Katrine Lundebye, Robin Ørnsrud
Software Mentions: 2
Published: over 7 years ago

10.3390/ijms20164013

Matrisome Properties of Scaffolds Direct Fibroblasts in Idiopathic Pulmonary Fibrosis
Cited by: 34
Author(s): Linda Elowsson Rendin, Anna Löfdahl, Emma Åhrman, Catharina Müller, Thomas Notermans, Barbora Michaliková, Oskar Rosmark, Xin Zhou, Göran Dellgren, Martin Silverborn, Leif Bjermer, Anders Malmström, Anna‐Karin Larsson‐Callerfelt, Hanna Isaksson, Johan Malmström, Gunilla Westergren‐Thorsson
Software Mentions: 2
Published: almost 7 years ago

10.3390/ijms21114126

Comprehensive Bioinformatics Identifies Key microRNA Players in ATG7-Deficient Lung Fibroblasts
Cited by: 10
Author(s): Stevan D. Stojanović, Maximilian Fuchs, Jan Fiedler, Xiaoyan Ke, Anna‐Katharina Meinecke, Annette Just, Andreas Pich, Thomas Thum, Meik Kunz
Software Mentions: 2
Published: about 6 years ago

10.3390/ijms18112419

Comparative Proteomic Analysis of Lysine Acetylation in Fish CIK Cells Infected with Aquareovirus
Cited by: 11
Author(s): Hongbo Guo, Jie Zhang, Yaping Wang, Chen Bu, Yanyan Zhou, Fang Qin
Software Mentions: 2
Published: over 8 years ago

10.3390/ijms19010296

Preservation Method and Phosphate Buffered Saline Washing Affect the Acute Myeloid Leukemia Proteome.
Cited by: 3
Author(s): Rebecca Wangen, Elise Aasebø, Andrea Trentani, Stein Ove Døskeland, Øystein Bruserud, Frode Selheim, Maria Hernandez-Valladares
Software Mentions: 2
Published: over 8 years ago

10.7554/eLife.60480

Chemical genetics and proteome-wide site mapping reveal cysteine MARylation by PARP-7 on immune-relevant protein targets
Cited by: 37
Author(s): Kelsie M Rodriguez, Sara C. Buch-Larsen, Ilsa T Kirby, Ivan Rodriguez Siordia, David Hutin, Marit Rasmussen, Denis M. Grant, Larry L. David, Jason Matthews, Michael L. Nielsen, Michael S. Cohen
Software Mentions: 2
Published: over 5 years ago

10.7554/eLife.61816

Proteomics reveals synergy between biomass degrading enzymes and inorganic Fenton chemistry in leaf-cutting ant colonies
Cited by: 7
Author(s): Morten Schiøtt, Jacobus J. Boomsma
Software Mentions: 2
Published: over 5 years ago

10.3390/ijms19124123

High Throughput Chemical Screening Reveals Multiple Regulatory Proteins on FOXA1 in Breast Cancer Cell Lines
Cited by: 7
Author(s): Shixiong Wang, Sachin Kumar Singh, Madhumohan R. Katika, Sandra López-Avilés, Antoni Hurtado
Software Mentions: 2
Published: over 7 years ago

10.7150/thno.37623

Comprehensive characterization of the phosphoproteome of gastric cancer from endoscopic biopsy specimens
Cited by: 19
Author(s): Yuichi Abe, Hidekazu Hirano, Hirokazu Shoji, Asa Tada, Junko Isoyama, Akemi Kakudo, Daigo Gunji, Kazufumi Honda, Narikazu Boku, Jun Adachi, Takeshi Tomonaga
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0244699

Proteomic identification of the UDP-GlcNAc: PI α1–6 GlcNAc-transferase subunits of the glycosylphosphatidylinositol biosynthetic pathway of Trypanosoma brucei
Cited by: 3
Author(s): Zhe Ji, Michele Tinti, Michael A. J. Ferguson
Software Mentions: 2
Published: about 5 years ago

10.1371/journal.pone.0094257

Alteration of Protein Levels during Influenza Virus H1N1 Infection in Host Cells: A Proteomic Survey of Host and Virus Reveals Differential Dynamics
Cited by: 39
Author(s): Susann Kummer, Max Flöttmann, Björn Schwanhäußer, Christian Sieben, Michael Veit, Matthias Selbach, Edda Klipp, Andreas Herrmann
Software Mentions: 2
Published: about 12 years ago

10.1371/journal.pone.0140036

In-Depth, Label-Free Analysis of the Erythrocyte Cytoplasmic Proteome in Diamond Blackfan Anemia Identifies a Unique Inflammatory Signature
Cited by: 25
Author(s): Esther N. Pesciotta, Hieu Lam, Andrew V. Kossenkov, Jingping Ge, Louise C. Showe, Philip J. Mason, Monica Bessler, David W. Speicher
Software Mentions: 2
Published: over 10 years ago

10.1186/s13395-020-00226-5

High-throughput proteomics fiber typing (ProFiT) for comprehensive characterization of single skeletal muscle fibers
Cited by: 24
Author(s): Sebastian Kallabis, Lena Abraham, Stefan Müller, Verena Dzialas, Clara Türk, Janica L. Wiederstein, Theresa Bock, Hendrik Nolte, Leonardo Nogara, Bert Blaauw, Thomas Braun, Marcus Krüger
Software Mentions: 2
Published: about 6 years ago

10.1186/s13287-018-0867-4

Early passaging of mesenchymal stem cells does not instigate significant modifications in their immunological behavior
Cited by: 26
Author(s): Niketa Sareen, Glen Lester Sequiera, Rakesh Chaudhary, Ejlal Abu‐El‐Rub, Subir Roy Chowdhury, Vikram Sharma, Arun Surendran, Meenal Moudgil, Paul Fernyhough, Amir Ravandi, Sanjiv Dhingra
Software Mentions: 2
Published: about 8 years ago

10.1016/j.str.2017.04.005

The Architecture of the Anbu Complex Reflects an Evolutionary Intermediate at the Origin of the Proteasome System
Cited by: 11
Author(s): Adrian C. D. Fuchs, Vikram Alva, Lorena Maldoner, R. Albrecht, M.D. Hartmann, Joerg Martin
Software Mentions: 2
Published: about 9 years ago

10.1371/journal.pone.0161513

Preliminary Validation of a High Docosahexaenoic Acid (DHA) and -Linolenic Acid (ALA) Dietary Oil Blend: Tissue Fatty Acid Composition and Liver Proteome Response in Atlantic Salmon (Salmo salar) Smolts
Cited by: 8
Author(s): Waldo G. Nuez-Ortín, Chris Carter, Richard Wilson, Ira Cooke, Peter D. Nichols
Software Mentions: 2
Published: almost 10 years ago

10.1038/s41598-021-84274-x

Comparison of plasma and cerebrospinal fluid proteomes identifies gene products guiding adult neurogenesis and neural differentiation in birds
Cited by: 1
Author(s): Eleni Voukali, Nithya Kuttiyarthu Veetil, Pavel Němec, Pavel Stopka, Michal Vinkler
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-020-74288-2

Cell-free DNA in plasma as an essential immune system regulator
Cited by: 19
Author(s): Marie Korabečná, Alžběta Zinková, Iva Brynychova, Blanka Chylíková, Petr Přikryl, Lucie Šedová, Pavel Neužil, Ondřej Šeda
Software Mentions: 2
Published: over 5 years ago

10.1111/apha.13496

Exercise‐dependent increases in protein synthesis are accompanied by chromatin modifications and increased MRTF‐SRF signalling
Cited by: 23
Author(s): Francesca Solagna, Leonardo Nogara, Kenneth A. Dyar, Franziska Greulich, Ashfaq Ali Mir, Clara Türk, Theresa Bock, Alessia Geremia, Martina Baraldo, Roberta Sartori, Jean Farup, N. Henriette Uhlenhaut, Kristian Vissing, Marcus Krüger, Bert Blaauw
Software Mentions: 2
Published: about 6 years ago

10.1038/s41598-020-77535-8

Proteomics analysis of serum small extracellular vesicles for the longitudinal study of a glioblastoma multiforme mouse model
Cited by: 11
Author(s): Federica Anastasi, Francesco Greco, Marialaura Dilillo, Eleonora Vannini, Valentina Cappello, Laura Baroncelli, Mario Costa, Mauro Gemmi, Matteo Caleo, Liam A. McDonnell
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-021-92931-4

Overlapping regions of Caf20 mediate its interactions with the mRNA-5′cap-binding protein eIF4E and with ribosomes
Cited by: 4
Author(s): Ebelechukwu C. Nwokoye, Eiman AlNaseem, Robert A. Crawford, Lydia M. Castelli, Martin D. Jennings, Christopher J. Kershaw, Graham D. Pavitt
Software Mentions: 2
Published: almost 5 years ago

10.1371/journal.pntd.0008282

Differentiation-dependent susceptibility of human muscle cells to Zika virus infection
Cited by: 11
Author(s): Vincent Legros, Patricia Jeannin, Julien Burlaud‐Gaillard, Thibault Chaze, Quentin Giai Gianetto, Gillian Butler‐Browne, Vincent Mouly, Jim Zoladek, Philippe V. Afonso, Mariela-Natacha Gonzàlez, Mariette Matondo, Ingo Riederer, Philippe Roingeard, Antoine Gessain, Valérie Choumet, Pierre‐Emmanuel Ceccaldi
Software Mentions: 2
Published: almost 6 years ago

10.1038/s41598-020-70393-4

The proteomic analysis of breast cell line exosomes reveals disease patterns and potential biomarkers
Cited by: 69
Author(s): Yousef Risha, Zoran Minić, Shahrokh M. Ghobadloo, Maxim V. Berezovski
Software Mentions: 2
Published: almost 6 years ago

10.1038/s41598-020-70565-2

Kinetic analysis of effects of temperature and time on the regulation of venom expression in Bungarus multicinctus
Cited by: 10
Author(s): Xiao Yin, Shuai Guo, Jihai Gao, Lu Luo, Xuejiao Liao, Mingqian Li, He Su, Zhixing Huang, Jiang Xu, Jin Pei, Shilin Chen
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.pntd.0009132

Nucleotide sugar biosynthesis occurs in the glycosomes of procyclic and bloodstream form Trypanosoma brucei
Cited by: 9
Author(s): Maria Lucia S. Güther, Alan R. Prescott, Sabine Kuettel, Michele Tinti, Michael A. J. Ferguson
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-020-68985-1

A benzimidazole inhibitor attenuates sterile inflammation induced in a model of systemic autoinflammation in female mice
Cited by: 4
Author(s): Federica Agliano, Keaton Karlinsey, Michael Ragazzi, Antoine Ménoret, Anthony T. Vella
Software Mentions: 2
Published: almost 6 years ago

10.1186/s12864-016-3432-5

Proteomics informed by transcriptomics for characterising active transposable elements and genome annotation in Aedes aegypti
Cited by: 52
Author(s): Kevin Maringer, Amjad Yousuf, Kate J Heesom, Jun Fan, David A. Lee, Ana Fernández-Sesma, Conrad Bessant, David A. Matthews, Andrew D. Davidson
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.pntd.0009512

Human immune response against salivary antigens of Simulium damnosum s.l.: A new epidemiological marker for exposure to blackfly bites in onchocerciasis endemic areas
Cited by: 2
Author(s): Laura Willen, Marı́a-Gloria Basáñez, Vít Dvořák, Francis B. D. Veriegh, Frank Twum Aboagye, Bright Idun, Maha E. Osman, Mike Y. Osei-Atweneboana, Orin Courtenay, Petr Volf
Software Mentions: 2
Published: almost 5 years ago

10.3390/ijms20123073

Comparative Integrated Omics Analysis of the Hfq Regulon in Bordetella pertussis
Cited by: 10
Author(s): Ana Dienstbier, Fabian Amman, Daniel Štipl, Denisa Petráčková, Branislav Večerek
Software Mentions: 2
Published: almost 7 years ago

10.1038/s41598-020-58740-x

Protein sorting into protein bodies during barley endosperm development is putatively regulated by cytoskeleton members, MVBs and the HvSNF7s
Cited by: 10
Author(s): Valentin Roustan, Julia Hilscher, Marieluise Weidinger, Siegfried Reipert, Azita Shabrangy, Claudia Gebert, Bianca Dietrich, Georgi Dermendjiev, Madeleine Schnurer, Pierre Jean Roustan, Eva Stöger, Verena Ibl
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-019-50575-5

Changes in the microsomal proteome of tomato fruit during ripening
Cited by: 17
Author(s): Daniela Pontiggia, Francesco Spinelli, Claudia Fabbri, Valerio Licursi, Rodolfo Negri, Giulia De Lorenzo, Benedetta Mattei
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-020-59163-4

Chronic irradiation of human cells reduces histone levels and deregulates gene expression
Cited by: 17
Author(s): Donna Lowe, Mareike Herzog, Thorsten Mosler, Howard A. Cohen, Sarah Felton, Petra Beli, Ken Raj, Yaron Galanty, Stephen Jackson
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-019-43328-x

ALK4/5-dependent TGF-β signaling contributes to the crosstalk between neurons and microglia following axonal lesion
Cited by: 8
Author(s): Antonella Raffo-Romero, Tanina Arab, Christelle Van Camp, Quentin Lemaire, Maxence Wisztorski, Julien Franck, Soulaimane Aboulouard, Françoise Le Marrec-Croq, Pierre-Éric Sautière, Jacopo Vizioli, Michel Salzet, Christophe Lefebvre
Software Mentions: 2
Published: about 7 years ago

10.1038/s41598-019-47829-7

Protein Complex Identification and quantitative complexome by CN-PAGE
Cited by: 22
Author(s): Michał Górka, Corné Swart, Beata Siemiątkowska, Silvia Martínez-Jaime, Aleksandra Skirycz, Sebastian Streb, Alexander Graf
Software Mentions: 2
Published: almost 7 years ago

10.1038/s41598-020-58397-6

Active nuclear import of the deacetylase Sirtuin-2 is controlled by its C-terminus and importins
Cited by: 19
Author(s): Matthew J. G. Eldridge, Jorge A. Pereira, Francis Impens, Mélanie Hamon
Software Mentions: 2
Published: over 6 years ago

10.1186/s12861-018-0177-1

Short term optical defocus perturbs normal developmental shifts in retina/RPE protein abundance
Cited by: 11
Author(s): Nina Riddell, Pierre Faou, Sheila G. Crewther
Software Mentions: 2
Published: almost 8 years ago

10.1038/s41598-019-42436-y

Biomarkers of post-discharge mortality among children with complicated severe acute malnutrition
Cited by: 43
Author(s): James M. Njunge, Agnes Gwela, Nelson Kibinge, Moses Ngari, Lydia Nyamako, Emily Nyatichi, Johnstone Thitiri, Gerard Bryan Gonzales, Robert Bandsma, Judd L. Walson, Evelyn Gitau, James A. Berkley
Software Mentions: 2
Published: about 7 years ago

10.1371/journal.pgen.1007514

Regulation of the opposing (p)ppGpp synthetase and hydrolase activities in a bifunctional RelA/SpoT homologue from Staphylococcus aureus
Cited by: 58
Author(s): Fabio Lino Gratani, Petra Horvatek, Tobias Geiger, Marina Borisova, Christoph Mayer, Iwan Grin, Samuel Wagner, Wieland Steinchen, Gert Bange, Ana Velić, Boris Maček, Christiane Wolz
Software Mentions: 2
Published: almost 8 years ago

10.1038/s41598-018-23505-0

Proteomic analysis of plasma extracellular vesicles reveals mitochondrial stress upon HTLV-1 infection
Cited by: 22
Author(s): Patricia Jeannin, Thibault Chaze, Quentin Giai Gianetto, Mariette Matondo, Olivier Gout, Antoine Gessain, Philippe V. Afonso
Software Mentions: 2
Published: about 8 years ago

10.1038/s41598-019-43154-1

An Integrated Chemical Proteomics Approach for Quantitative Profiling of Intracellular ADP-Ribosylation
Cited by: 26
Author(s): Karunakaran A. Kalesh, Saulius Lukauskas, Annabel Borg, Ambrosius P. Snijders, Vinay Ayyappan, Anthony K.L. Leung, Dorian O. Haskard, Peter A. DiMaggio
Software Mentions: 2
Published: about 7 years ago

10.1038/s41598-020-59412-6

Label-free quantitative proteomic analysis of M. longissimus dorsi from cattle during dietary restriction and subsequent compensatory growth
Cited by: 6
Author(s): Yvonne Mullins, Kate Keogh, David A. Kenny, A. K. Kelly, Padraig O’ Boyle, Sinéad M. Waters
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-018-19530-8

APLP1 is endoproteolytically cleaved by γ-secretase without previous ectodomain shedding
Cited by: 22
Author(s): Linda Schauenburg, Filip Liebsch, Murat Eravci, Magnus C. Mayer, Christoph Weise, Gerhard Multhaup
Software Mentions: 2
Published: over 8 years ago

10.1016/j.molcel.2016.11.001

A SUMO-Dependent Protein Network Regulates Chromosome Congression during Oocyte Meiosis
Cited by: 66
Author(s): Federico Pelisch, Triin Tammsalu, Bin Wang, Ellis Jaffray, Anton Gartner, Ronald T. Hay
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.pgen.1007795

A single class of ARF GTPase activated by several pathway-specific ARF-GEFs regulates essential membrane traffic in Arabidopsis
Cited by: 25
Author(s): Manoj K. Singh, Sandra Richter, Hauke Beckmann, Marika Kientz, York‐Dieter Stierhof, Nadine Anders, Florian Fäßler, Michael L. Nielsen, Christian Knöll, Alexis Thomann, Mirita Franz‐Wachtel, Boris Maček, Karen Skriver, Peter Pimpl, Gerd Jürgens
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.pgen.1009071

The RSC (Remodels the Structure of Chromatin) complex of Candida albicans shows compositional divergence with distinct roles in regulating pathogenic traits
Cited by: 6
Author(s): Vinutha K. Balachandra, Jiyoti Verma, Madhu Shankar, Timothy M. Tucey, Ana Traven, Ralf B. Schittenhelm, Santanu Ghosh
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-017-17756-6

Proteome-wide Analysis of Lysine 2-hydroxyisobutyrylation in Developing Rice (Oryza sativa) Seeds
Cited by: 50
Author(s): Xiaoxi Meng, Shihai Xing, Loida M. Perez, Xiaojun Peng, Zhao QingYong, Edilberto D. Redoña, Cailin Wang, Zhaohua Peng
Software Mentions: 2
Published: over 8 years ago

10.1038/s41598-018-25059-7

Trafficking, localization and degradation of the Na+,HCO3− co-transporter NBCn1 in kidney and breast epithelial cells
Cited by: 8
Author(s): Christina W. Olesen, Jens Vogensen, Ida Axholm, Marc Severin, Julie Schnipper, Isabella Skandorff Pedersen, Jakob Hjorth von Stemann, Jacob M. Schrøder, Dan Ploug Christensen, Stine Falsig Pedersen
Software Mentions: 2
Published: about 8 years ago

10.1016/j.molcel.2019.08.005

Polyamines Control eIF5A Hypusination, TFEB Translation, and Autophagy to Reverse B Cell Senescence
Cited by: 189
Author(s): Hanlin Zhang, Ghada Alsaleh, Jack Feltham, Yizhe Sun, Gennaro Napolitano, Thomas Riffelmacher, P. David Charles, Lisa Frau, Philip Hublitz, Zhanru Yu, Shabaz Mohammed, Andrea Ballabio, Stefan Balabanov, Jane Mellor, Anna Katharina Simon
Software Mentions: 2
Published: over 6 years ago

10.1042/BCJ20200309

Use of the Polo-like kinase 4 (PLK4) inhibitor centrinone to investigate intracellular signalling networks using SILAC-based phosphoproteomics
Cited by: 19
Author(s): Dominic P. Byrne, Christopher J. Clarke, Philip Brownridge, Anton Kalyuzhnyy, Simon Perkins, Amy E. Campbell, David Mason, Andrew R. Jones, Patrick A. Eyers
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.ppat.1008822

Shigella hijacks the exocyst to cluster macropinosomes for efficient vacuolar escape
Cited by: 20
Author(s): Yuen-Yan Chang, Virginie Stévenin, Magalie Duchateau, Quentin Giai Gianetto, Véronique Hourdel, Cristina S. Rodrigues, Mariette Matondo, Norbert Reiling, Jost Enninga
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.pcbi.1005725

Deciphering HLA-I motifs across HLA peptidomes improves neo-antigen predictions and identifies allostery regulating HLA specificity
Cited by: 184
Author(s): Michal Bassani-Sternberg, Chloé Chong, Philippe Guillaume, Marthe Solleder, HuiSong Pak, Philippe O. Gannon, Lana E. Kandalaft, George Coukos, David Gfeller
Software Mentions: 2
Published: almost 9 years ago

10.1042/BCJ20200930

Development of a multiplexed targeted mass spectrometry assay for LRRK2-phosphorylated Rabs and Ser910/Ser935 biomarker sites
Cited by: 26
Author(s): Raja Sekhar Nirujogi, Francesca Tonelli, Matthew Taylor, Paweł Lis, Alexander Zimprich, Esther Sammler, Dario R. Alessi
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.ppat.1006980

Viral targeting of TFIIB impairs de novo polymerase II recruitment and affects antiviral immunity
Cited by: 13
Author(s): Darya A. Haas, Arno Meiler, Katharina Geiger, Carola Vogt, Ellen Preuß, Georg Kochs, Andreas Pichlmair
Software Mentions: 2
Published: about 8 years ago

10.1371/journal.ppat.1008129

Organising the cell cycle in the absence of transcriptional control: Dynamic phosphorylation co-ordinates the Trypanosoma brucei cell cycle post-transcriptionally
Cited by: 31
Author(s): Corinna Benz, Michael D. Urbaniak
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-020-63926-4

A proximity-labeling proteomic approach to investigate invadopodia molecular landscape in breast cancer cells
Cited by: 12
Author(s): Sylvie Thuault, Claire Mamelonet, Joëlle Salameh, Kevin Ostacolo, Brice Chanez, Danièle Salaün, Emilie Baudelet, Stéphane Audebert, Luc Camoin, Ali Badache
Software Mentions: 2
Published: about 6 years ago

10.1242/jcs.154880

Tyrosine phosphorylation of WIP releases bound WASP and impairs podosome assembly in macrophages
Cited by: 15
Author(s): Vineetha Vijayakumar, James Monypenny, Xing Judy Chen, Laura M. Machesky, Sérgio Lilla, Adrian J. Thrasher, Inés M. Antón, Yolanda Calle, Gareth E. Jones
Software Mentions: 2
Published: over 12 years ago

10.1371/journal.pbio.3000774

Cell–substrate adhesion drives Scar/WAVE activation and phosphorylation by a Ste20-family kinase, which controls pseudopod lifetime
Cited by: 24
Author(s): Shashi P. Singh, Peter A. Thomason, Sérgio Lilla, Matthias Schaks, Qian Tang, Bruce L. Goode, Laura M. Machesky, Klemens Rottner, Robert H. Insall
Software Mentions: 2
Published: almost 6 years ago

10.1242/jcs.257188

Ribosome quality control activity potentiates vaccinia virus protein synthesis during infection
Cited by: 17
Author(s): Elayanambi Sundaramoorthy, Andrew P Ryan, Amit Fulzele, Marilyn Leonard, Matthew D. Daugherty, Eric J. Bennett
Software Mentions: 2
Published: about 5 years ago

10.1186/s12943-018-0890-1

Proteogenomic characterization and comprehensive integrative genomic analysis of human colorectal cancer liver metastasis
Cited by: 56
Author(s): Yu‐Shui Ma, Tao Huang, Xiaoming Zhong, Hongwei Zhang, Xianling Cong, Hong Xu, Gai‐Xia Lu, Fei Yu, Sheng Xue, Zhongwei Lv, Da Fu
Software Mentions: 2
Published: over 7 years ago

10.1111/jcmm.12407

Establishment of a proteome profile and identification of molecular markers for mouse spermatogonial stem cells
Cited by: 27
Author(s): Quan Zhou, Yueshuai Guo, Bo Zheng, Binbin Shao, Min Jiang, Gaigai Wang, Tao Zhou, Lei Wang, Zuomin Zhou, Xuejiang Guo, Xiaoyan Huang
Software Mentions: 2
Published: over 11 years ago

10.3390/plants9101370

Comparative Physiological and Proteomic Analysis Reveals Different Involvement of Proteins during Artificial Aging of Siberian Wildrye Seeds
Cited by: 5
Author(s): Lei Xiong, Wenhui Liu, Junlong Zhao, Minghong You, Chaohui Xiong, Yi Xiong, Yanli Xiong, Qingqing Yu, Shiqie Bai, Xiao Ma
Software Mentions: 2
Published: over 5 years ago

10.1002/jcsm.12496

Skeletal muscle mTORC1 regulates neuromuscular junction stability
Cited by: 38
Author(s): Martina Baraldo, Alessia Geremia, Marco Pirazzini, Leonardo Nogara, Francesca Solagna, Clara Türk, Hendrik Nolte, Vanina Romanello, Aram Megighian, Simona Boncompagni, Marcus Krüger, Marco Sandri, Bert Blaauw
Software Mentions: 2
Published: over 6 years ago

10.1074/jbc.RA120.015468

PFN2 and NAA80 cooperate to efficiently acetylate the N-terminus of actin
Cited by: 16
Author(s): Rasmus Ree, L. A. P. De Kind, Anna Kaziales, Sylvia Varland, Minglu Dai, Klaus Richter, Adrian Drazic, Thomas Arnesen
Software Mentions: 2
Published: over 5 years ago

10.1007/s00726-021-03006-7

Gamma-gliadin specific celiac disease antibodies recognize p31-43 and p57-68 alpha gliadin peptides in deamidation related manner as a result of cross-reaction
Cited by: 7
Author(s): Ádám Diós, Rita Elek, Ildikò Szabó, Szilvia Horváth, Judit Gyimesi, Róbert Király, Katharina Werkstetter, Sibylle Koletzko, László Fésüs, Ilma Rita Korponay-Szabó
Software Mentions: 2
Published: about 5 years ago

10.1074/jbc.M115.645283

Organization of Subunits in the Membrane Domain of the Bovine F-ATPase Revealed by Covalent Cross-linking
Cited by: 38
Author(s): Jennifer Lee, Shuzhe Ding, Thomas B Walpole, Andrew N Holding, M.G. Montgomery, Ian M. Fearnley, John E. Walker
Software Mentions: 2
Published: about 11 years ago

10.1083/jcb.201802151

Xrp1 genetically interacts with the ALS-associated FUS orthologue caz and mediates its toxicity
Cited by: 20
Author(s): Moushami Mallik, Marica Catinozzi, Clemens Hug, Li Zhang, Marina Wagner, Julia Bussmann, Jonas Bittern, Sina Mersmann, Christian Klämbt, Hannes C.A. Drexler, Martijn Huynen, Juan M. Vaquerizas, Erik Storkebaum
Software Mentions: 2
Published: almost 8 years ago

10.1371/journal.ppat.1004623

Characterization of the Mycobacterial Acyl-CoA Carboxylase Holo Complexes Reveals Their Functional Expansion into Amino Acid Catabolism
Cited by: 17
Author(s): M.T. Ehebauer, Michael Zimmermann, Arjen J. Jakobi, Elke E. Noens, Daniel Laubitz, B. Cichocki, Hédia Marrakchi, Marie‐Antoinette Lanéelle, Mamadou Daffé, Carsten Sachse, Andrzej Dziembowski, Uwe Sauer, Matthias Wilmanns
Software Mentions: 2
Published: over 11 years ago

10.1109/ACCESS.2020.3047588

Methods for Proteogenomics Data Analysis, Challenges, and Scalability Bottlenecks: A Survey
Cited by: 12
Author(s): Muhammad Usman Tariq, Muhammad Haseeb, Mohammed Aledhari, Rehma Razzak, Reza M. Parizi, Fahad Saeed
Software Mentions: 2
Published: over 5 years ago

10.1002/glia.24032

Regulation of aquaporin‐4 expression in the central nervous system investigated using M23‐AQP4 null mouse
Cited by: 10
Author(s): Francesco Pisani, Laura Simone, Maria Grazia Mola, Manuela De Bellis, Antonio Frigeri, Grazia Paola Nicchia, María Svelto
Software Mentions: 2
Published: about 5 years ago

10.1016/j.immuni.2017.11.016

Oncogenic RAS Signaling Promotes Tumor Immunoresistance by Stabilizing PD-L1 mRNA
Cited by: 416
Author(s): Matthew A. Coelho, Sophie de Carné Trécesson, Sareena Rana, Davide Zecchin, Christopher Moore, Míriam Molina‐Arcas, Philip East, Bradley Spencer‐Dene, Emma Nye, Karin Barnouin, Ambrosius P. Snijders, Wi S. Lai, Perry J. Blackshear, Julian Downward
Software Mentions: 2
Published: over 8 years ago

10.1186/s13229-017-0160-x

Developmental disruption of amygdala transcriptome and socioemotional behavior in rats exposed to valproic acid prenatally
Cited by: 41
Author(s): Chris Barrett, Thomas Hennessey, Katelyn M. Gordon, Steven J. Ryan, Morgan L. McNair, Kerry J. Ressler, Donald G. Rainnie
Software Mentions: 2
Published: almost 9 years ago

10.1016/j.gpb.2020.06.012

Screening of Potential Biomarkers for Gastric Cancer with Diagnostic Value Using Label-free Global Proteome Analysis
Cited by: 12
Author(s): Yongxi Song, Jun Wang, Jingwei Sun, Xiaowan Chen, Jinxin Shi, Zhonghua Wu, Dehao Yu, Fei Zhang, Zhenning Wang
Software Mentions: 2
Published: over 5 years ago

10.7717/peerj.9988

Analysis of the infant gut microbiome reveals metabolic functional roles associated with healthy infants and infants with atopic dermatitis using metaproteomics
Cited by: 10
Author(s): Amornthep Kingkaw, Massalin Nakphaichit, Narissara Suratannon, Sunee Nitisinprasert, Chantha Wongoutong, Pantipa Chatchatee, Sucheewin Krobthong, Sawanya Charoenlappanit, Sittiruk Roytrakul, Wanwipa Vongsangnak
Software Mentions: 2
Published: over 5 years ago

10.7717/peerj.4599

Phosphoproteomic insights into processes influenced by the kinase-like protein DIA1/C3orf58
Cited by: 7
Author(s): Agnieszka Hareza, Magda Bakun, Bianka Świderska, Małgorzata Dudkiewicz, Alicja Koscielny, Anna T. Bajur, Jacek Jaworski, Michał Dadlez, Krzysztof Pawłowski
Software Mentions: 2
Published: about 8 years ago

10.1186/s12870-016-0900-7

Modulation of plant growth in vivo and identification of kinase substrates using an analog-sensitive variant of CYCLIN-DEPENDENT KINASE A;1
Cited by: 13
Author(s): Hirofumi Harashima, Nico Dißmeyer, Philippe Hammann, Yuko Nomura, Katharina Kramer, Hirofumi Nakagami, Arp Schnittger
Software Mentions: 2
Published: over 9 years ago

10.7717/peerj.2433

Metaproteomics of saliva identifies human protein markers specific for individuals with periodontitis and dental caries compared to orally healthy controls
Cited by: 53
Author(s): Daniel Belstrøm, Rosa Rakownikow Jersie-Christensen, David Lyon, Christian Damgaard, Lars Juhl Jensen, Palle Holmstrup, Jesper V. Olsen
Software Mentions: 2
Published: almost 10 years ago

10.1186/s13059-018-1533-y

Dynamics and functional interplay of histone lysine butyrylation, crotonylation, and acetylation in rice under starvation and submergence
Cited by: 70
Author(s): Yue Lu, Qiutao Xu, Yuan Liu, Yue Yu, Zhongyi Cheng, Yu Zhao, Dao‐Xiu Zhou
Software Mentions: 2
Published: over 7 years ago

10.1186/s40478-019-0736-0

Transcriptome and proteome profiling of neural stem cells from the human subventricular zone in Parkinson’s disease
Cited by: 27
Author(s): Vanessa Donega, Saskia M. Burm, Miriam E. van Strien, Emma J. van Bodegraven, Iryna Paliukhovich, Hanneke Geut, Wilma D. J. van de Berg, Ka Wan Li, August B. Smit, Onur Basak, Elly M. Hol
Software Mentions: 2
Published: about 7 years ago

10.1371/journal.ppat.1004835

Conserved Streptococcus pneumoniae Spirosomes Suggest a Single Type of Transformation Pilus in Competence
Cited by: 26
Author(s): Raphaël Laurenceau, Petya V. Krasteva, Amy Diallo, Sahra Ouarti, Magalie Duchateau, Christian Malosse, Julia Chamot‐Rooke, Rémi Fronzes
Software Mentions: 2
Published: about 11 years ago

10.3389/fpls.2018.00775

Using RT-qPCR, Proteomics, and Microscopy to Unravel the Spatio-Temporal Expression and Subcellular Localization of Hordoindolines Across Development in Barley Endosperm
Cited by: 12
Author(s): Azita Shabrangy, Valentin Roustan, Siegfried Reipert, Marieluise Weidinger, Pierre-Jean Roustan, Eva Stöger, Wolfram Weckwerth, Verena Ibl
Software Mentions: 2
Published: about 8 years ago

Projects: cran: Andromeda

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Papers Mentioning Andromeda 1,724