cran: Andromeda | Projects | Ecosyste.ms: Papers

10.3389/fnins.2019.00143

Cx43-Associated Secretome and Interactome Reveal Synergistic Mechanisms for Glioma Migration and MMP3 Activation
Cited by: 9
Author(s): Qurratulain Aftab, Marc Mesnil, Emmanuel Ojefua, Alisha Poole, Jenna Noordenbos, Pierre‐Olivier Strale, Chris Sitko, Caitlin Le, Nikolay Stoynov, Leonard J. Foster, Wun-Chey Sin, Christian C. Naus, Vincent C. Chen
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.ppat.1009580

A Ran-binding protein facilitates nuclear import of human papillomavirus type 16
Cited by: 10
Author(s): Kun-Yi Lai, Matteo Rizzato, Inci Aydin, Ruth Villalonga-Planells, Hannes C.A. Drexler, Mario Schelhaas
Software Mentions: 2
Published: over 3 years ago

10.3389/fnmol.2021.623659

Targeted Quantification of Detergent-Insoluble RNA-Binding Proteins in Human Brain Reveals Stage and Disease Specific Co-aggregation in Alzheimer’s Disease
Cited by: 12
Author(s): Qi Guo, Eric B. Dammer, Maotian Zhou, Sean R. Kundinger, Marla Gearing, James J. Lah, Aĺlan I. Levey, Zhandong Liu, Nicholas T. Seyfried
Software Mentions: 2
Published: over 3 years ago

10.3390/vaccines9010008

N-terminal VP1 Truncations Favor T = 1 Norovirus-Like Particles
Cited by: 10
Author(s): Ronja Pogan, Victor U. Weiss, Kevin M. Bond, Jasmin Dülfer, Christoph Krisp, Nicholas A. Lyktey, Jürgen Müller-Guhl, Samuele Zoratto, Günter Allmaier, Martin F. Jarrold, César Muñoz‐Fontela, Hartmut Schlüter, Charlotte Uetrecht
Software Mentions: 2
Published: almost 4 years ago

10.1186/s40168-017-0375-2

MetaLab: an automated pipeline for metaproteomic data analysis
Cited by: 101
Author(s): Kai Cheng, Zhibin Ning, Xu Zhang, Leyuan Li, Bo Liao, Janice Mayne, Alain Stintzi, Daniel Figeys
Software Mentions: 2
Published: almost 7 years ago

10.3389/fmolb.2021.659058

Phenotypic and Multi-Omics Characterization of Escherichia coli K-12 Adapted to Chlorhexidine Identifies the Role of MlaA and Other Cell Envelope Alterations Regulated by Stress Inducible Pathways in CHX Resistance
Cited by: 7
Author(s): Branden S. J. Gregorchuk, Shelby L Reimer, Kari A. C. Green, Nicola Helen Cartwright, Daniel R. Beniac, Shannon L Hiebert, Timothy F. Booth, Patrick Chong, Garrett Westmacott, George G. Zhanel, Denice C. Bay
Software Mentions: 2
Published: over 3 years ago

10.15252/msb.20167357

Proteomics reveals the effects of sustained weight loss on the human plasma proteome
Cited by: 171
Author(s): Philipp Geyer, Nicolai J. Wewer Albrechtsen, Stefka Tyanova, Niklas Graßl, Eva W. Iepsen, Julie Lundgren, Sten Madsbad, Jens J. Holst, Signe S. Torekov, Matthias Mann
Software Mentions: 2
Published: almost 8 years ago

10.3389/fmicb.2019.00384

Mixotrophic Growth Under Micro-Oxic Conditions in the Purple Sulfur Bacterium “Thiodictyon syntrophicum”
Cited by: 14
Author(s): Samuel M. Luedin, Nicola Storelli, Francesco Danza, Samuele Roman, Matthias Wittwer, Joël F. Pothier, Mauro Tonolla
Software Mentions: 2
Published: over 5 years ago

10.3389/fnmol.2018.00345

S-palmitoylation Is Required for the Control of Growth Cone Morphology of DRG Neurons by CNP-Induced cGMP Signaling
Cited by: 13
Author(s): Alexandre Dumoulin, Alina Dagane, Gunnar Dittmar, Fritz G. Rathjen
Software Mentions: 2
Published: about 6 years ago

10.3389/fmicb.2018.02977

Xylem Sap Proteomics Reveals Distinct Differences Between R Gene- and Endophyte-Mediated Resistance Against Fusarium Wilt Disease in Tomato
Cited by: 34
Author(s): Francisco J. de Lamo, Maria E. Constantin, David H. Fresno, Sjef Boeren, Martijn Rep, Frank L. W. Takken
Software Mentions: 2
Published: almost 6 years ago

10.1111/acel.12604

Biochemical isolation of myonuclei employed to define changes to the myonuclear proteome that occur with aging
Cited by: 25
Author(s): Alecia Cutler, Eric B. Dammer, Duc M. Doung, Nicholas T. Seyfried, Anita H. Corbett, Grace K. Pavlath
Software Mentions: 2
Published: over 7 years ago

10.3389/fmicb.2015.00084

Novel Flp pilus biogenesis-dependent natural transformation
Cited by: 32
Author(s): Angel Angelov, Paul M. P. van Bergen, Florian Nadler, Philipp Hornburg, Antoni Lichev, Maria Übelacker, Fiona Pachl, Bernhard Küster, Wolfgang Liebl
Software Mentions: 2
Published: almost 10 years ago

10.1186/s12934-019-1071-7

Comparative proteome analysis in an Escherichia coli CyDisCo strain identifies stress responses related to protein production, oxidative stress and accumulation of misfolded protein
Cited by: 9
Author(s): Isabel Guerrero Montero, Katarzyna Magdalena Dolata, Rabea Schlüter, Gilles Malherbe, Susanne Sievers, Daniela Zühlke, Thomas Sura, Emma Davé, Katharina Riedel, Colin Robinson
Software Mentions: 2
Published: almost 6 years ago

10.15252/msb.20209443

Proteomic patterns associated with response to breast cancer neoadjuvant treatment
Cited by: 31
Author(s): Anjana Shenoy, Nishanth Belugali Nataraj, Gili Perry, Fabricio Loayza‐Puch, Remco Nagel, I Marin, Nora Balint, Noa Bossel, A J Pavlovsky, Iris Barshack, Bella Kaufman, Reuven Agami, Maya Dadiani, Tamar Geiger
Software Mentions: 2
Published: about 4 years ago

10.3389/fmicb.2020.564350

Global Proteomic Analysis of Lysine Crotonylation in the Plant Pathogen Botrytis cinerea
Cited by: 7
Author(s): Ning Zhang, Zhenzhou Yang, Wenxing Liang, Mengjie Liu
Software Mentions: 2
Published: about 4 years ago

10.3389/fneur.2017.00110

Phosphoproteome Profiling Reveals Circadian Clock Regulation of Posttranslational Modifications in the Murine Hippocampus
Cited by: 22
Author(s): Cheng‐Kang Chiang, Bo Xu, Neel Mehta, Janice Mayne, Warren Sun, Kai Cheng, Zhibin Ning, Jing Dong, Hanfa Zou, Hai-Ying Mary Cheng, Daniel Figeys
Software Mentions: 2
Published: over 7 years ago

10.1016/j.redox.2019.101265

Oxygen-dependent bond formation with FIH regulates the activity of the client protein OTUB1
Cited by: 13
Author(s): Christina Pickel, Julia Günter, Amalia Ruiz-Serrano, Patrick Spielmann, Jacqueline-Alba Fabrizio, Witold Wolski, Daniel J. Peet, Roland H. Wenger, Carsten C. Scholz
Software Mentions: 2
Published: about 5 years ago

10.3389/fmicb.2019.00094

Combined Transcriptome and Proteome Analysis of RpoS Regulon Reveals Its Role in Spoilage Potential of Pseudomonas fluorescens
Cited by: 21
Author(s): Xiaoxiang Liu, Jun Xu, Junli Zhu, Peng Du, Aijun Sun
Software Mentions: 2
Published: almost 6 years ago

10.3389/fmicb.2021.618566

Distinct Human Gut Microbial Taxonomic Signatures Uncovered With Different Sample Processing and Microbial Cell Disruption Methods for Metaproteomic Analysis
Cited by: 10
Author(s): Carmen García-Durán, Raquel Martínez-López, Inés Zapico, Enrique Pérez, Eduardo Romeu, Javier Arroyo, María Luisa Hernáez, Aida Pitarch, Lucía Monteoliva, Concha Gil
Software Mentions: 2
Published: over 3 years ago

10.3389/fmicb.2014.00432

Characterization of the surfaceome of the metal-reducing bacterium Desulfotomaculum reducens
Cited by: 16
Author(s): Elena Dalla Vecchia, Paul Shao, Elena I. Suvorova, Diego Chiappe, Romain Hamelin, Rizlan Bernier‐Latmani
Software Mentions: 2
Published: over 10 years ago

10.3389/fmicb.2021.725612

The Binary Toxin of Clostridioides difficile Alters the Proteome and Phosphoproteome of HEp-2 Cells
Cited by: 8
Author(s): Florian Stieglitz, Ralf Gerhard, Andreas Pich
Software Mentions: 2
Published: about 3 years ago

10.3389/fmed.2017.00159

Proteomics of Eosinophil Activation
Cited by: 6
Author(s): Deane F. Mosher, Emily M. Wilkerson, Keren B. Turton, Alexander S. Hebert, Joshua J. Coon
Software Mentions: 2
Published: about 7 years ago

10.3389/fmicb.2019.02596

Multiomic Fermentation Using Chemically Defined Synthetic Hydrolyzates Revealed Multiple Effects of Lignocellulose-Derived Inhibitors on Cell Physiology and Xylose Utilization in Zymomonas mobilis
Cited by: 13
Author(s): Yaoping Zhang, Jessica M. Vera, Dan Xie, Jose Serate, Edward L. Pohlmann, John N. Russell, Alexander S. Hebert, Joshua J. Coon, Trey K. Sato, Robert Landick
Software Mentions: 2
Published: about 5 years ago

10.3389/fmicb.2017.02599

Low Concentrations of Vitamin C Reduce the Synthesis of Extracellular Polymers and Destabilize Bacterial Biofilms
Cited by: 61
Author(s): Santosh Pandit, Vaishnavi Ravikumar, Alyaa M. Abdel-Haleem, Abderahmane Derouiche, Venkata Raghavendra Subrahmanya Sar Mokkapati, Carina Sihlbom, Katsuhiko Mineta, Takashi Gojobori, Xin Gao, Fredrik Westerlund, Ivan Mijaković
Software Mentions: 2
Published: almost 7 years ago

10.1186/s12916-021-02071-9

Absolute quantitative proteomics using the total protein approach to identify novel clinical immunohistochemical markers in renal neoplasms
Cited by: 3
Author(s): Susana Jorge, José Luís Capelo, William A. LaFramboise, Swati Satturwar, Dimitrios Korentzelos, Sheldon Bastacky, Gabriela Quiroga‐Garza, Rajiv Dhir, Jacek R. Wiśniewski, Carlos Lodeiro, Hugo M. Santos
Software Mentions: 2
Published: about 3 years ago

10.3390/metabo11070459

Lipoprotein Proteomics and Aortic Valve Transcriptomics Identify Biological Pathways Linking Lipoprotein(a) Levels to Aortic Stenosis
Cited by: 13
Author(s): Raphaëlle Bourgeois, Jérôme Bourgault, Audrey-Anne Després, Nicolas Perrot, Jakie Guertin, Arnaud Girard, Patricia L. Mitchell, Clarisse Gotti, Sylvie Bourassa, Corey A. Scipione, Nathalie Gaudreault, Michael B. Boffa, Marlys L. Koschinsky, Philippe Pîbarot, Arnaud Droit, Sébastien Thériault, Patrick Mathieu, Yohan Bossé, Benoît J. Arsenault
Software Mentions: 2
Published: over 3 years ago

10.3389/fimmu.2021.643441

Comparative Analysis of Global Proteome and Lysine Acetylome Between Naive CD4+ T Cells and CD4+ T Follicular Helper Cells
Cited by: 2
Author(s): Ming Zhao, Sujie Jia, Xiaofei Gao, Hong Qiu, Ruifang Wu, Haijing Wu, Qianjin Lu
Software Mentions: 2
Published: over 3 years ago

10.3389/fimmu.2020.565484

Prenatal Endotoxin Exposure Induces Fetal and Neonatal Renal Inflammation via Innate and Th1 Immune Activation in Preterm Pigs
Cited by: 8
Author(s): Tik Muk, Pingping Jiang, Allan Stensballe, Kerstin Skovgaard, Per Torp Sangild, Duc Ninh Nguyen
Software Mentions: 2
Published: about 4 years ago

10.1111/acel.12780

Oxidation resistance 1 is a novel senolytic target
Cited by: 81
Author(s): Xin Zhang, Suping Zhang, Xingui Liu, Yingying Wang, Jianhui Chang, Xuan Zhang, Samuel G. Mackintosh, Alan J. Tackett, Yonghan He, Dongwen Lv, Rémi-Martin Laberge, Judith Campisi, Jianrong Wang, Guangrong Zheng, Daohong Zhou
Software Mentions: 2
Published: over 6 years ago

10.3389/fimmu.2020.01981

Biogenesis of HLA Ligand Presentation in Immune Cells Upon Activation Reveals Changes in Peptide Length Preference
Cited by: 7
Author(s): Fabio Marino, Aikaterini Semilietof, Justine Michaux, HuiSong Pak, George Coukos, Markus Müller, Michal Bassani-Sternberg
Software Mentions: 2
Published: about 4 years ago

10.3389/fimmu.2020.00033

Molecular Signatures of Neuroinflammation Induced by αSynuclein Aggregates in Microglial Cells
Cited by: 47
Author(s): Satyapriya Sarkar, Eric B. Dammer, Emir Malovic, Abby L. Olsen, Syed Ali Raza, Tianwen Gao, Hailian Xiao, Danielle Oliver, Duc M. Duong, Valerie Joers, Nicholas T. Seyfried, Meixiang Huang, Thomas Kukar, Malú G. Tansey, Anumantha G. Kanthasamy, Srikant Rangaraju
Software Mentions: 2
Published: almost 5 years ago

10.3389/fmicb.2020.00189

Loss of the Periplasmic Chaperone Skp and Mutations in the Efflux Pump AcrAB-TolC Play a Role in Acquired Resistance to Antimicrobial Peptides in Salmonella typhimurium
Cited by: 11
Author(s): Gal Kapach, Reut Nuri, Christiane Schmidt, Adi Danin, Shir Ferrera, Alon Savidor, Roman G. Gerlach, Yechiel Shai
Software Mentions: 2
Published: over 4 years ago

10.1186/s12864-019-6151-x

Proteomic analysis showing the signaling pathways involved in the rhizome enlargement process in Nelumbo nucifera
Cited by: 16
Author(s): Dingding Cao, Rebecca Njeri Damaris, Yue Zhang, Meihui Liu, Ming Li, Pingfang Yang
Software Mentions: 2
Published: about 5 years ago

10.1016/j.molmet.2018.03.003

Epoxygenase inactivation exacerbates diet and aging-associated metabolic dysfunction resulting from impaired adipogenesis
Cited by: 15
Author(s): Antoni Olona, Ximena Terra, Jeong‐Hun Ko, Carme Grau-Bové, Montserrat Pinent, Anna Ardèvol, Ana García Díaz, Aida Moreno‐Moral, Matthew L. Edin, David Bishop‐Bailey, Darryl C. Zeldin, Timothy J. Aitman, Enrico Petretto, Mayte Blay, Jacques Behmoaras
Software Mentions: 2
Published: over 6 years ago

10.3390/md16020042

Proteomic Analyses of the Unexplored Sea Anemone Bunodactis verrucosa
Cited by: 17
Author(s): Dany Domínguez-Pérez, Alexandre Campos, Armando A. Rodríguez, Maria V. Turkina, Tiago Ribeiro, Hugo Osório, Vı́tor Vasconcelos, Agostinho Antunes
Software Mentions: 2
Published: almost 7 years ago

10.1007/s00401-021-02285-4

Age-associated insolubility of parkin in human midbrain is linked to redox balance and sequestration of reactive dopamine metabolites
Cited by: 26
Author(s): Jacqueline M. Tokarew, Daniel N. El-Kodsi, Nathalie A. Lengacher, Travis K. Fehr, Antoinette Nguyen, Bojan Shutinoski, Brian O’Nuallain, Ming Jin, Jasmine Khan, Andy Cheuk-Him Ng, Juan Li, Quan Jiang, Mei Zhang, Liqun Wang, Rajib Sengupta, Kathryn R. Barber, An Tran, Doo Soon Im, Steve Callaghan, David Park, Stéphanie Zandee, Xiajun Dong, Clemens R. Scherzer, Alexandre Prat, Eve C. Tsai, Masashi Takanashi, Nobutaka Hattori, Jennifer A. Chan, Luigi Zecca, Andrew B. West, Arne Holmgren, Lawrence G. Puente, Gary S. Shaw, Gergely Tóth, John Woulfe, Peggy Taylor, Julianna J. Tomlinson, Michael G. Schlossmacher
Software Mentions: 2
Published: over 3 years ago

10.1111/cobi.12695

A generalized approach for producing, quantifying, and validating citizen science data from wildlife images
Cited by: 186
Author(s): Alexandra Swanson, Margaret Kosmala, Chris Lintott, Craig Packer
Software Mentions: 2
Published: over 8 years ago

10.1016/j.dib.2015.08.010

Dataset from the global phosphoproteomic mapping of early mitotic exit in human cells
Cited by: 8
Author(s): Samuel Rogers, Rachael A. McCloy, Benjamin L. Parker, Rima Chaudhuri, Velimir Gayevskiy, Nolan J. Hoffman, D. Neil Watkins, Roger J. Daly, David E. James, Andrew Burgess
Software Mentions: 2
Published: almost 9 years ago

10.3389/fimmu.2021.573266

Pneumolysin Is Responsible for Differential Gene Expression and Modifications in the Epigenetic Landscape of Primary Monocyte Derived Macrophages
Cited by: 5
Author(s): Joby Cole, Adrienn Angyal, Richard D. Emes, Tim Mitchell, Mark J. Dickman, David H. Dockrell
Software Mentions: 2
Published: over 3 years ago

10.1038/s42003-021-01797-9

Surfactant-assisted one-pot sample preparation for label-free single-cell proteomics
Cited by: 38
Author(s): Chia‐Feng Tsai, Peng Fei Zhang, David Scholten, Kendall J. Martin, Yiting Wang, Rui Zhao, William B. Chrisler, Dhwani Patel, Maowei Dou, Yuzhi Jia, Carolina Reduzzi, Xia Liu, Ronald J. Moore, Kristin Burnum-Johnson, Miao-Hsia Lin, Chuan‐Chih Hsu, Jon Jacobs, Jacob Kagan, Sudhir Srivastava, Karin D. Rodland, H. Steven Wiley, Weijun Qian, Richard Smith, Ying Zhu, Massimo Cristofanilli, Tao Liu, Huiping Liu, Tujin Shi
Software Mentions: 2
Published: over 3 years ago

10.1038/s42003-021-02364-y

HLA-B and cysteinylated ligands distinguish the antigen presentation landscape of extracellular vesicles
Cited by: 8
Author(s): Julia Bauzá‐Martinez, Albert J. R. Heck, Wei Wu
Software Mentions: 2
Published: over 3 years ago

10.3390/molecules26082125

Glycan-Induced Protein Dynamics in Human Norovirus P Dimers Depend on Virus Strain and Deamidation Status
Cited by: 10
Author(s): Jasmin Dülfer, Hao Yan, Maxim N. Brodmerkel, Robert Creutznacher, Álvaro Mallagaray, Thomas Peters, Carl Caleman, Erik Marklund, Charlotte Uetrecht
Software Mentions: 2
Published: over 3 years ago

10.1038/s42003-020-0817-4

pH-responsive high stability polymeric nanoparticles for targeted delivery of anticancer therapeutics
Cited by: 137
Author(s): L. Palanikumar, Sumaya Al-Hosani, Mona Kalmouni, Vanessa P. Nguyen, Liaqat Ali, Renu Pasricha, Francisco N. Barrera, Mazin Magzoub
Software Mentions: 2
Published: over 4 years ago

10.1016/j.molmet.2019.04.006

Reduced insulin action in muscle of high fat diet rats over the diurnal cycle is not associated with defective insulin signaling
Cited by: 10
Author(s): Lewin Small, Amanda E. Brandon, Benjamin L. Parker, Vinita Deshpande, Azrah Samsudeen, Greg M. Kowalski, Jane Reznick, Donna Wilks, Elaine Preston, Clinton R. Bruce, David E. James, Nigel Turner, Gregory J. Cooney
Software Mentions: 2
Published: over 5 years ago

10.1038/s42003-021-01684-3

Global mapping of protein–metabolite interactions in Saccharomyces cerevisiae reveals that Ser-Leu dipeptide regulates phosphoglycerate kinase activity
Cited by: 28
Author(s): Marcin Luzarowski, Rubén Vicente, Andrei Kiselev, Mateusz Wagner, Dennis Schlossarek, Alexander Erban, Leonardo Perez de Souza, Dorothee Childs, Izabela Wojciechowska, Urszula Luzarowska, Michał Górka, Ewelina Sokołowska, Monika Kosmacz, Juan C. Moreno, Aleksandra Brzezińska, Bhavana Vegesna, Joachim Kopka, Alisdair R. Fernie, Lothar Willmitzer, Jennifer C. Ewald, Aleksandra Skirycz
Software Mentions: 2
Published: almost 4 years ago

10.1186/s12014-019-9243-3

Elucidating the endogenous synovial fluid proteome and peptidome of inflammatory arthritis using label-free mass spectrometry
Cited by: 15
Author(s): Shalini M. Mahendran, Edward Keystone, Roman Krawetz, Kun Liang, Eleftherios P. Diamandis, Vinod Chandran
Software Mentions: 2
Published: over 5 years ago

10.3390/md18120599

Biofunctionality of Enzymatically Derived Peptides from Codfish (Gadus morhua) Frame: Bulk In Vitro Properties, Quantitative Proteomics, and Bioinformatic Prediction
Cited by: 10
Author(s): Ali Jafarpour, Simon Gregersen, Rocio Marciel Gomes, Paolo Marcatili, Tobias Hegelund Olsen, Charlotte Jacobsen, Michael Toft Overgaard, Ann‐Dorit Moltke Sørensen
Software Mentions: 2
Published: almost 4 years ago

10.26508/lsa.202101084

Quantitative proteomics identifies PTP1B as modulator of B cell antigen receptor signaling
Cited by: 0
Author(s): Jennifer Schwarz, Lorenz Grundmann, Thomas Kokot, Kathrin Kläsener, Sandra Fotteler, Dávid Medgyesi, Maja Köhn, Michael Reth, Bettina Warscheid
Software Mentions: 2
Published: about 3 years ago

10.1038/s42003-020-0795-6

An isothermal shift assay for proteome scale drug-target identification
Cited by: 38
Author(s): Kerri A. Ball, Kristofor Webb, S. J. Coleman, Kira A. Cozzolino, Jeremy Jacobsen, Kevin R. Jones, Michael H. B. Stowell, William M. Old
Software Mentions: 2
Published: almost 5 years ago

10.1002/1878-0261.12463

Perineural invasion in pancreatic cancer: proteomic analysis and in vitro modelling
Cited by: 37
Author(s): Wasfi Alrawashdeh, Richard C. Jones, Laurent Dumartin, Tomasz P. Radon, Pedro R. Cutillas, Roger Feakins, Branko Dmitrović, İhsan Ekin Demir, Güralp O. Ceyhan, Tatjana Crnogorac‐Jurčević
Software Mentions: 2
Published: over 5 years ago

10.3389/fimmu.2020.581070

Plasma Proteome Responses in Salmonid Fish Following Immunization
Cited by: 8
Author(s): Fiona K. Bakke, Milena Mira Monte, David Stead, Dwight R. Causey, Alex Douglas, Daniel J. Macqueen, Helen Dooley
Software Mentions: 2
Published: about 4 years ago

10.3389/fmicb.2019.03101

Proteomic Investigation Uncovers Potential Targets and Target Sites of Pneumococcal Serine-Threonine Kinase StkP and Phosphatase PhpP
Cited by: 25
Author(s): Claudia Hirschfeld, Alejandro Gómez-Mejía, Jürgen Bartel, Christian Hentschker, Manfred Rohde, Sandra Maaß, Sven Hammerschmidt, Dörte Becher
Software Mentions: 2
Published: almost 5 years ago

10.15252/msb.20177663

A proteomic atlas of insulin signalling reveals tissue‐specific mechanisms of longevity assurance
Cited by: 41
Author(s): Luke S Tain, Robert Sehlke, Chirag Jain, Manopriya Chokkalingam, Nagarjuna Nagaraj, Paul Essers, Mark Rassner, Sebastian Grönke, Jenny Froelich, Christoph Dieterich, Matthias Mann, Nazif Alic, Andreas Beyer, Linda Partridge
Software Mentions: 2
Published: about 7 years ago

10.15252/msb.202010125

Identification of covalent modifications regulating immune signaling complex composition and phenotype
Cited by: 5
Author(s): Annika Frauenstein, Stefan Ebner, Fynn M. Hansen, Ankit Sinha, Kshiti Phulphagar, Kirby N. Swatek, Daniel Hornburg, Matthias Mann, Felix Meissner
Software Mentions: 2
Published: over 3 years ago

10.15252/msb.20156423

Differential dynamics of the mammalian <scp>mRNA</scp> and protein expression response to misfolding stress
Cited by: 140
Author(s): Zhe Cheng, Guoshou Teo, Sabrina Krueger, Tara M. Rock, Hiromi W. L. Koh, Hyungwon Choi, Christine Vogel
Software Mentions: 2
Published: almost 9 years ago

10.26508/lsa.201900603

Phenotypic proteomic profiling identifies a landscape of targets for circadian clock–modulating compounds
Cited by: 13
Author(s): Ray S, Radosław Lach, Kate J Heesom, Utham K. Valekunja, Vesela Encheva, Ambrosius P. Snijders, Akhilesh B. Reddy
Software Mentions: 2
Published: almost 5 years ago

10.26508/lsa.201900380

Cellular response upon proliferation in the presence of an active mitotic checkpoint
Cited by: 2
Author(s): Andrea Corno, Elena Chiroli, Fridolin Groß, Claudio Vernieri, Vittoria Matafora, Stefano Maffini, Marco Cosentino Lagomarsino, Ángela Bachi, Andrea Ciliberto
Software Mentions: 2
Published: over 5 years ago

10.1186/s12864-020-07194-6

The expression of the acarbose biosynthesis gene cluster in Actinoplanes sp. SE50/110 is dependent on the growth phase
Cited by: 3
Author(s): Julian Droste, Vera Ortseifen, Lena Schaffert, Marcus Persicke, Susanne Schneiker-Bekel, Alfred Pühler, Jörn Kalinowski
Software Mentions: 2
Published: almost 4 years ago

10.1186/s12014-018-9189-x

Proteomics-based insights into mitogen-activated protein kinase inhibitor resistance of cerebral melanoma metastases
Cited by: 15
Author(s): Nina Zila, Andrea Bileck, Besnik Muqaku, Lukas Janker, Ossia M. Eichhoff, Phil F. Cheng, Reinhard Dummer, Mitchell P. Levesque, Christopher Gerner, Verena Paulitschke
Software Mentions: 2
Published: over 6 years ago

10.1186/s12916-019-1478-3

Profiling of the muscle-specific dystroglycan interactome reveals the role of Hippo signaling in muscular dystrophy and age-dependent muscle atrophy
Cited by: 13
Author(s): Andriy S. Yatsenko, Mariya M. Kucherenko, Yuanbin Xie, Dina Aweida, Henning Urlaub, Renate Scheibe, Shenhav Cohen, Halyna R. Shcherbata
Software Mentions: 2
Published: almost 5 years ago

10.3390/cells9071666

Disclosing the Interactome of Leukemogenic NUP98-HOXA9 and SET-NUP214 Fusion Proteins Using a Proteomic Approach
Cited by: 9
Author(s): Adélia Mendes, Ramona Jühlen, Sabrina Bousbata, Birthe Fahrenkrog
Software Mentions: 2
Published: over 4 years ago

10.3390/cells9051191

Super-Resolution Localisation of Nuclear PI(4)P and Identification of Its Interacting Proteome
Cited by: 14
Author(s): Veronika Fáberová, Ilona Kalasová, Alžběta Krausová, Pavel Hozák
Software Mentions: 2
Published: over 4 years ago

10.3390/cells10010068

Limited Proteolysis-Coupled Mass Spectrometry Identifies Phosphatidylinositol 4,5-Bisphosphate Effectors in Human Nuclear Proteome
Cited by: 18
Author(s): Martin Sztacho, Barbora Šalovská, Jakub Červenka, Can Balaban, Peter Hoboth, Pavel Hozák
Software Mentions: 2
Published: almost 4 years ago

10.3389/fmicb.2021.634366

The Role of Pseudo-Orthocaspase (SyOC) of Synechocystis sp. PCC 6803 in Attenuating the Effect of Oxidative Stress
Cited by: 3
Author(s): Saul Lema A, Marina Klemenčič, Franziska Völlmy, Maarten Altelaar, Christiane Funk
Software Mentions: 2
Published: almost 4 years ago

10.3390/cells9030673

Cyclin-Dependent Kinase 18 Controls Trafficking of Aquaporin-2 and Its Abundance through Ubiquitin Ligase STUB1, Which Functions as an AKAP
Cited by: 18
Author(s): Alessandro Dema, Dörte Faust, Katina Lazarow, Marc Wippich, Martin Neuenschwander, Kerstin Zühlke, Andrea Geelhaar, Tamara Pallien, Eileen Hallscheidt, Jenny Eichhorst, Burkhard Wiesner, Hana Černecká, Oliver Popp, Philipp Mertins, Gunnar Dittmar, Jens Peter von Kries, Jens Peter Klußmann
Software Mentions: 2
Published: over 4 years ago

10.1186/s12014-017-9168-7

Proteomic profiling identifies markers for inflammation-related tumor–fibroblast interaction
Cited by: 16
Author(s): Daniel Drev, Andrea Bileck, Zeynep Erdem, Thomas Mohr, Gerald Timelthaler, Andrea Beer, Christopher Gerner, Brigitte Marian
Software Mentions: 2
Published: about 7 years ago

10.1002/msb.134766

Acetylation dynamics and stoichiometry in <scp>S</scp> accharomyces cerevisiae 
Cited by: 216
Author(s): Brian T. Weinert, Vytautas Iešmantavičius, Tarek Moustafa, Christian Schölz, Sebastian Wagner, Christoph Magnes, Rudolf Zechner, Chunaram Choudhary
Software Mentions: 2
Published: almost 11 years ago

10.1074/mcp.RA117.000315

Compartment-resolved Proteomic Analysis of Mouse Aorta during Atherosclerotic Plaque Formation Reveals Osteoclast-specific Protein Expression
Cited by: 27
Author(s): Michael Wierer, Matthias Prestel, Herbert B. Schiller, Guangyao Yan, Christoph Schaab, Sepiede Azghandi, Julia Werner, Thorsten Kessler, Rainer Malik, Marta Murgia, Zouhair Aherrahrou, Heribert Schunkert, Martin Dichgans, Matthias Mann
Software Mentions: 2
Published: almost 7 years ago

10.3390/cells9081817

Cyclopamine and Rapamycin Synergistically Inhibit mTOR Signalling in Mouse Hepatocytes, Revealing an Interaction of Hedgehog and mTor Signalling in the Liver
Cited by: 4
Author(s): Luise Spormann, Christiane Rennert, Erik Kolbe, Fritzi Ott, Carolin Lossius, Robert Lehmann, Rolf Gebhardt, Thomas Berg, Madlen Matz‐Soja
Software Mentions: 2
Published: over 4 years ago

10.3390/cells9102272

Small-Molecule Chemical Knockdown of MuRF1 in Melanoma Bearing Mice Attenuates Tumor Cachexia Associated Myopathy
Cited by: 13
Author(s): Volker Adams, Victoria Gußen, Sergey Zozulya, André Cruz, Anselmo Sigari Moriscot, Axel Linke, Siegfried Labeit
Software Mentions: 2
Published: about 4 years ago

10.1016/j.cels.2019.08.005

High-Throughput Assessment of Kinome-wide Activation States
Cited by: 30
Author(s): Thierry Schmidlin, Donna O. Debets, Charlotte A.G.H. van Gelder, Kelly E. Stecker, Stamatia Rontogianni, Bart L. van den Eshof, Kristel Kemper, Esther H. Lips, Maartje van den Biggelaar, Daniel S. Peeper, Albert J. R. Heck, Maarten Altelaar
Software Mentions: 2
Published: about 5 years ago

10.3389/fmicb.2020.00209

Comparative Proteomics of Meat Spoilage Bacteria Predicts Drivers for Their Coexistence on Modified Atmosphere Packaged Meat
Cited by: 18
Author(s): Sandra Kolbeck, Christina Ludwig, Chen Meng, Maik Hilgarth, Rudi F. Vogel
Software Mentions: 2
Published: almost 5 years ago

10.3390/cells10071701

Phosphorylation in the Charged Linker Modulates Interactions and Secretion of Hsp90β
Cited by: 5
Author(s): Lorenz Weidenauer, Manfredo Quadroni
Software Mentions: 2
Published: over 3 years ago

10.3390/cells9040984

Characterization of RNP Networks of PUM1 and PUM2 Post-Transcriptional Regulators in TCam-2 Cells, a Human Male Germ Cell Model
Cited by: 4
Author(s): Maciej Jerzy Smialek, Erkut Ilaslan, Marcin Sajek, Aleksandra Świercz, Damian Mikolaj Janecki, Kamila Kusz-Zamelczyk, Tomasz Woźniak, Maciej Kotecki, Luiza Handschuh, Marek Figlerowicz, Jadwiga Jaruzelska
Software Mentions: 2
Published: over 4 years ago

10.1186/s40168-020-00967-x

A semi-tryptic peptide centric metaproteomic mining approach and its potential utility in capturing signatures of gut microbial proteolysis
Cited by: 6
Author(s): Zhixiang Yan, Feixiang He, Fei Xiao, Huanhuan He, Dan Li, Cong Li, Lin Lü, Huijin Zhu, Yanyan Wu, Ru Yan, Xiaofeng Li, Hong Shan
Software Mentions: 2
Published: almost 4 years ago

10.3389/fmicb.2020.594743

Systematic Analysis of Lysine Lactylation in the Plant Fungal Pathogen Botrytis cinerea
Cited by: 37
Author(s): Mingming Gao, Ning Zhang, Wenxing Liang
Software Mentions: 2
Published: about 4 years ago

10.1038/cr.2017.36

Baf60b-mediated ATM-p53 activation blocks cell identity conversion by sensing chromatin opening
Cited by: 18
Author(s): Shuyi Ji, Linying Zhu, Yimeng Gao, Xiaoran Zhang, Yupeng Yan, Jin Cen, Rongxia Li, Rong Zeng, Lujian Liao, Chaoqi Hou, Yawei Gao, Shaorong Gao, Gang Wei, Lijian Hui
Software Mentions: 2
Published: over 7 years ago

10.3390/cells8020192

In-Depth Proteome Analysis Highlights HepaRG Cells as a Versatile Cell System Surrogate for Primary Human Hepatocytes
Cited by: 35
Author(s): Georg Tascher, Audrey Burban, Sandrine Camus, Marine Plumel, Stéphanie Chanon, Rémy Le Guével, В. П. Шевченко, Alain Van Dorsselaer, Étienne Lefai, Christiane Guguen‐Guillouzo, Fabrice Bertile
Software Mentions: 2
Published: over 5 years ago

10.1186/s12014-016-9124-y

Cardiovascular proteomics in the era of big data: experimental and computational advances
Cited by: 9
Author(s): Maggie P. Y. Lam, Edward Lau, Dominic C. M. Ng, Ding Wang, Peipei Ping
Software Mentions: 2
Published: almost 8 years ago

10.3389/fnmol.2021.658339

Broad Influence of Mutant Ataxin-3 on the Proteome of the Adult Brain, Young Neurons, and Axons Reveals Central Molecular Processes and Biomarkers in SCA3/MJD Using Knock-In Mouse Model
Cited by: 7
Author(s): Kalina Wiatr, Łukasz Marczak, J. Pérot, Emmanuel Brouillet, Julien Flament, Maciej Figiel
Software Mentions: 2
Published: over 3 years ago

10.1074/mcp.M115.048090

Characterization of the Tyrosine Kinase-Regulated Proteome in Breast Cancer by Combined use of RNA interference (RNAi) and Stable Isotope Labeling with Amino Acids in Cell Culture (SILAC) Quantitative Proteomics
Cited by: 15
Author(s): Justin Stebbing, Hua Zhang, Yang Xu, Arnhild Grothey, Paul Ajuh, Nicos Angelopoulos, Georgios Giamas
Software Mentions: 2
Published: about 9 years ago

10.1074/mcp.RA118.000982

N-terminal Acetylation Levels Are Maintained During Acetyl-CoA Deficiency in Saccharomyces cerevisiae
Cited by: 25
Author(s): Sylvia Varland, Henriette Aksnes, Fedor Kryuchkov, Francis Impens, Delphi Van Haver, Veronique Jonckheere, Mathias Ziegler, Kris Gevaert, Petra Van Damme, Thomas Arnesen
Software Mentions: 2
Published: almost 6 years ago

10.1186/s40170-019-0194-y

CHCHD4 confers metabolic vulnerabilities to tumour cells through its control of the mitochondrial respiratory chain
Cited by: 14
Author(s): Luke W. Thomas, Jenna M. Stephen, Cinzia Esposito, Simon Hoer, Robin Antrobus, Alaa A. Ahmed, Hasan Al-Habib, Margaret Ashcroft
Software Mentions: 2
Published: over 5 years ago

10.3389/fpls.2020.00872

Seed Metabolism and Pathogen Resistance Enhancement in Pisum sativum During Colonization of Arbuscular Mycorrhizal Fungi: An Integrative Metabolomics-Proteomics Approach
Cited by: 9
Author(s): Nima Ranjbar Sistani, Getinet Desalegn, Hans‐Peter Kaul, Stefanie Wienkoop
Software Mentions: 2
Published: over 4 years ago

10.1074/mcp.TIR117.000516

Stable Isotope Dynamic Labeling of Secretomes (SIDLS) Identifies Authentic Secretory Proteins Released by Cancer and Stromal Cells
Cited by: 8
Author(s): Dean E. Hammond, J. Dinesh Kumar, Lorna Raymond, Deborah M. Simpson, Robert J. Beynon, Graham J. Dockray, Andrea Varró
Software Mentions: 2
Published: about 6 years ago

10.3390/v9050115

Label-Free Quantitative Proteomic Analysis of Chitosan Oligosaccharide-Treated Rice Infected with Southern Rice Black-Streaked Dwarf Virus
Cited by: 70
Author(s): Anne Yuqing Yang, Lu Yu, Zhuo Chen, Shanxue Zhang, Jing Shi, Xiaozhen Zhao, Yuanyou Yang, Deyu Hu, Baoan Song
Software Mentions: 2
Published: over 7 years ago

10.3389/fpls.2021.622795

Magnetic Field Induced Changes in the Shoot and Root Proteome of Barley (Hordeum vulgare L.)
Cited by: 7
Author(s): Azita Shabrangy, Arindam Ghatak, Shuang Zhang, Alfred Priller, Palak Chaturvedi
Software Mentions: 2
Published: over 3 years ago

10.3390/v11111023

Investigating the Cellular Transcriptomic Response Induced by the Makona Variant of Ebola Virus in Differentiated THP-1 Cells
Cited by: 5
Author(s): Andrew Bosworth, Stuart Dowall, Stuart D. Armstrong, Xuan Li, Xiaofeng Dong, Christine Bruce, Lisa F. P. Ng, Miles W. Carroll, Roger Hewson, Julian A. Hiscox
Software Mentions: 2
Published: about 5 years ago

10.1186/s12864-015-1753-4

Integrating Phosphoproteomics and Bioinformatics to Study Brassinosteroid-Regulated Phosphorylation Dynamics in Arabidopsis
Cited by: 44
Author(s): Long-Yau Lin, Chia‐Lang Hsu, Chih‐Lin Hu, Shiao Yun Ko, Hsu-Liang Hsieh, Hsuan‐Cheng Huang, Hsueh‐Fen Juan
Software Mentions: 2
Published: over 9 years ago

10.1128/AEM.02091-17

Multi-omics Reveals the Lifestyle of the Acidophilic, Mineral-Oxidizing Model Species Leptospirillum ferriphilum T
Cited by: 64
Author(s): Stephan Christel, Malte Herold, Sören Bellenberg, Mohamed El Hajjami, Antoine Buetti‐Dinh, Igor V. Pivkin, Wolfgang Sand, Paul Wilmes, Ansgar Poetsch, Mark Dopson
Software Mentions: 2
Published: almost 7 years ago

10.1073/pnas.2007056117

Histone variants in archaea and the evolution of combinatorial chromatin complexity
Cited by: 27
Author(s): Kathryn M Stevens, Jacob B. Swadling, Antoine Hocher, Corinna Bang, Simonetta Gribaldo, Ruth A. Schmitz, Tobias Warnecke
Software Mentions: 2
Published: almost 4 years ago

10.1016/j.celrep.2019.04.025

Promiscuous Targeting of Cellular Proteins by Vpr Drives Systems-Level Proteomic Remodeling in HIV-1 Infection
Cited by: 66
Author(s): Edward Jd Greenwood, James C Williamson, Agata Sienkiewicz, Adi Naamati, Nicholas J Matheson, Paul J. Lehner
Software Mentions: 2
Published: over 5 years ago

10.1186/s12864-019-6058-6

A homology-guided, genome-based proteome for improved proteomics in the alloploid Nicotiana benthamiana
Cited by: 40
Author(s): Jiorgos Kourelis, Farnusch Kaschani, Friederike Grosse‐Holz, Felix Homma, Markus Kaiser, Renier A. L. van der Hoorn
Software Mentions: 2
Published: about 5 years ago

10.1186/s40478-019-0847-7

Comparative profiling of the synaptic proteome from Alzheimer’s disease patients with focus on the APOE genotype
Cited by: 50
Author(s): Raphael Hesse, Maica Llavero Hurtado, Rosemary J. Jackson, Samantha L. Eaton, Abigail G. Herrmann, Martí Colom‐Cadena, Makis Tzioras, Declan King, Jamie Rose, Jane Tulloch, Chris-Anne McKenzie, Colin Smith, Christopher M. Henstridge, Douglas J. Lamont, Thomas M. Wishart, Tara L. Spires‐Jones
Software Mentions: 2
Published: almost 5 years ago

10.1038/s41419-021-03436-x

Alternative splicing of ceramide synthase 2 alters levels of specific ceramides and modulates cancer cell proliferation and migration in Luminal B breast cancer subtype
Cited by: 16
Author(s): Trishna Pani, Kajal Rajput, Animesh Kar, Harsh Sharma, Rituparna Basak, Nihal Medatwal, Sandhini Saha, Gagan Dev, Satish Kumar, Shweta Gupta, Arnab Mukhopadhyay, Dipankar Malakar, Tushar Kanti Maiti, Aneeshkumar G. Arimbasseri, Svs Deo, Ravi Datta Sharma, Avinash Bajaj, Ujjaini Dasgupta
Software Mentions: 2
Published: almost 4 years ago

10.1016/j.mcpro.2021.100119

Identification of Endogenous Kinase Substrates by Proximity Labeling Combined with Kinase Perturbation and Phosphorylation Motifs
Cited by: 16
Author(s): Tomoya Niinae, Koshi Imami, Naoyuki Sugiyama, Yasushi Ishihama
Software Mentions: 2
Published: almost 4 years ago

10.1074/mcp.RA120.002359

Plasma Proteomes Can Be Reidentifiable and Potentially Contain Personally Sensitive and Incidental Findings
Cited by: 17
Author(s): Philipp E. Geyer, Sebastian Porsdam Mann, Peter V. Treit, Matthias Mann
Software Mentions: 2
Published: almost 4 years ago

10.1074/mcp.M115.053926

Novel Molecular Insights into Classical and Alternative Activation States of Microglia as Revealed by Stable Isotope Labeling by Amino Acids in Cell Culture (SILAC)-based Proteomics*
Cited by: 45
Author(s): Harris Bell-Temin, Ashley E. Culver‐Cochran, Dale Chaput, Christina M. Carlson, Melanie N. Kuehl, Brant R. Burkhardt, Paula C. Bickford, Bin Liu, Stanley M. Stevens
Software Mentions: 2
Published: almost 9 years ago

10.1186/s12864-018-4517-0

Liver proteome response of pre-harvest Atlantic salmon following exposure to elevated temperature
Cited by: 37
Author(s): Waldo G. Nuez-Ortín, Chris Carter, Peter D. Nichols, Ira Cooke, Richard Wilson
Software Mentions: 2
Published: almost 7 years ago

10.1038/s41421-021-00278-x

Discovery of a cooperative mode of inhibiting RIPK1 kinase
Cited by: 11
Author(s): Huyan Meng, Guowei Wu, Xinsuo Zhao, Anhui Wang, Dekang Li, Yilun Tong, Teng Jin, Ye Cao, Bing Shan, Shichen Hu, Ying Liu, Lifeng Pan, Xiaoxu Tian, Ping Wu, Chao Peng, Junying Yuan, Guohui Li, Tan Li, Zhaoyin Wang, Ying Li
Software Mentions: 2
Published: over 3 years ago

Projects: cran: Andromeda

Papers Mentioning Andromeda 1,724