Projects: cran: Andromeda
https://packages.ecosyste.ms/registries/cran.r-project.org/packages/Andromeda
Asynchronous Disk-Based Representation of Massive Data
10 versions
Latest release: about 3 years ago
3 dependent packages
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msuchard@ucla.edu
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Observational Health Data Sciences and Informatics (organization)
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Starting Score: 100 points
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Very Likely Science (85)
Papers Mentioning Andromeda 1,724
10.1016/j.joca.2021.02.008
Circadian time series proteomics reveals daily dynamics in cartilage physiologyCited by: 15
Author(s): Michal Dudek, Constanza Angelucci, Dharshika Pathiranage, Ping Wang, Venkatesh Mallikarjun, Craig Lawless, Joe Swift, Karl E. Kadler, Ray Boot-Handford, Judith A. Hoyland, Shireen R. Lamandé, John F. Bateman, Qing‐Jun Meng
Software Mentions: 2
Published: about 5 years ago
10.1186/s12967-016-0907-8
Cathepsin A inhibition attenuates myocardial infarction-induced heart failure on the functional and proteomic levelsCited by: 20
Author(s): Agnese Petrera, Johann Gassenhuber, Sven Ruf, Deepika Gunasekaran, Jennifer S. Esser, Jasmin H. Shahinian, Thomas Hübschle, Hartmut Rütten, Thorsten Sadowski, Oliver Schilling
Software Mentions: 2
Published: about 10 years ago
10.1111/jnc.14845
NYX‐2925 induces metabotropic<i>N</i>‐methyl‐<scp>d</scp>‐aspartate receptor (NMDAR) signaling that enhances synaptic NMDAR and α‐amino‐3‐hydroxy‐5‐methyl‐4‐isoxazolepropionic acid receptorCited by: 6
Author(s): M. Scott Bowers, Luisa P. Cacheaux, Srishti U. Sahu, Matthew Schmidt, Joseph A. Sennello, Katherine Leaderbrand, M. Amin Khan, Roger A. Kroes, Joseph R. Moskal
Software Mentions: 2
Published: over 6 years ago
10.1074/mcp.RA120.002273
Thermal Proteome Profiling in Zebrafish Reveals Effects of Napabucasin on Retinoic Acid MetabolismCited by: 7
Author(s): Niels Leijten, Petra A Bakker, Herman P. Spaink, Jeroen den Hertog, Simone Lemeer
Software Mentions: 2
Published: over 5 years ago
10.3390/biom10111581
The Proteasome Activators Blm10/PA200 Enhance the Proteasomal Degradation of N-Terminal HuntingtinCited by: 7
Author(s): Azzam Aladdin, Yanhua Yao, Ciyu Yang, Günther Kahlert, Marvi Ghani, Nikolett Király, Anita Boratkó, Karen Uray, Gunnar Dittmar, Krisztina Tar
Software Mentions: 2
Published: over 5 years ago
10.3390/ijms22115619
Molecular Mechanisms of Fetal Tendon Regeneration Versus Adult Fibrous RepairCited by: 11
Author(s): Iris Ribitsch, Andrea Bileck, Alexander D. Aldoshin, Maciej M. Kańduła, Rupert L. Mayer, Monika Egerbacher, Simone Gabner, Ulrike Auer, Sinan Gültekin, Johann Huber, David P. Kreil, Christopher Gerner, Florien Jenner
Software Mentions: 2
Published: about 5 years ago
10.3390/ijms22073690
N-Terminal Acetyltransferase Naa40p Whereabouts Put into N-Terminal Proteoform PerspectiveCited by: 10
Author(s): Veronique Jonckheere, Petra Van Damme
Software Mentions: 2
Published: about 5 years ago
10.3390/ijms22073740
RAD51 Inhibition Induces R-Loop Formation in Early G1 Phase of the Cell CycleCited by: 5
Author(s): Zuzana Naščáková, Barbora Boleslavska, Václav Urban, Anna Oravetzova, Edita Vlachova, Pavel Janscak, Jana Dobrovolná
Software Mentions: 2
Published: about 5 years ago
10.1155/2019/5879616
Circulating Cancer Stem Cell-Derived Extracellular Vesicles as a Novel Biomarker for Clinical Outcome EvaluationCited by: 31
Author(s): Davide Brocco, Paola Lanuti, Pasquale Simeone, Giuseppina Bologna, Damiana Pieragostino, Maria Concetta Cufaro, Vincenzo Graziano, Marta Peri, Pietro Di Marino, Michele De Tursi, Antonino Grassadonia, Ilario Giovanni Rapposelli, Laura Pierdomenico, Eva Ercolino, Fausta Ciccocioppo, Piero Del Boccio, Marco Marchisio, Clara Natoli, Sebastianó Miscia, Nicola Tinari
Software Mentions: 2
Published: over 6 years ago
10.3390/ijms21249706
Distinct Preflowering Drought Tolerance Strategies of Sorghum bicolor Genotype RTx430 Revealed by Subcellular Protein ProfilingCited by: 9
Author(s): Aaron J. Ogden, Shadan Abdali, Kristin Engbrecht, Mowei Zhou, Pubudu Handakumbura
Software Mentions: 2
Published: over 5 years ago
10.3390/ijms21239043
Multi-Omics Integration Highlights the Role of Ubiquitination in CCl4-Induced Liver FibrosisCited by: 9
Author(s): María Mercado-Gómez, Fernando Lopitz‐Otsoa, Mikel Azkargorta, Marina Serrano‐Maciá, Sofía Lachiondo‐Ortega, Naroa Goikoetxea‐Usandizaga, Rubén Rodríguez-Agudo, David Fernández‐Ramos, Maider Bizkarguenaga, Virginia Gutiérrez‐de Juan, Benoît Lectez, Kerman Aloria, Jesús M. Arizmendi, Jorge Simón, Cristina Alonso, Juan José Lozano, Matías A. Ávila, Jesús M. Bañales, J. J. G. Marin, Naiara Beraza, José M. Mato, Félix Elortza, Rosa Barrio, James D. Sutherland, Ugo Mayor, María Luz Martínez‐Chantar, Teresa C. Delgado
Software Mentions: 2
Published: over 5 years ago
10.3390/ijms22010428
Salinity Effects on Guard Cell Proteome in Chenopodium quinoaCited by: 19
Author(s): Fatemeh Rasouli, Ali Kiani‐Pouya, Lana Shabala, Leiting Li, Ayesha Tahir, Min Yu, Rainer Hedrich, Zhong‐Hua Chen, Richard Wilson, Heng Zhang, Sergey Shabala
Software Mentions: 2
Published: over 5 years ago
10.3390/ijms21176153
The Structure of Clostridioides difficile SecA2 ATPase Exposes Regions Responsible for Differential Target Recognition of the SecA1 and SecA2-Dependent SystemsCited by: 0
Author(s): Nataša Lindič, Jure Loboda, Aleksandra Usenik, Robert Vidmar, Dušan Turk
Software Mentions: 2
Published: almost 6 years ago
10.1371/journal.pone.0253364
Biochemical characterization of protease activity of Nsp3 from SARS-CoV-2 and its inhibition by nanobodiesCited by: 44
Author(s): Lee A. Armstrong, Sven M. Lange, Virginia Dee Cesare, S. Matthews, Raja Sekhar Nirujogi, Isobel Cole, Anthony G. Hope, Fraser Cunningham, Rachel Toth, Rukmini Mukherjee, Denisa Bojkova, Franz S Gruber, David W. Gray, Paul G. Wyatt, Jindrich Cinatl, Ivan Đikić, Paul Davies, Yogesh Kulathu
Software Mentions: 2
Published: almost 5 years ago
10.1186/1471-2164-14-906
The neuropeptide complement of the marine annelid Platynereis dumeriliiCited by: 117
Author(s): Markus Conzelmann, Elizabeth A. Williams, Karsten Krug, Mirita Franz‐Wachtel, Boris Maček, Gáspár Jékely
Software Mentions: 2
Published: over 13 years ago
10.3390/ijms21072331
Sugar Beet (Beta vulgaris) Guard Cells Responses to Salinity Stress: A Proteomic AnalysisCited by: 15
Author(s): Fatemeh Rasouli, Ali Kiani‐Pouya, Leiting Li, Heng Zhang, Zhong‐Hua Chen, Rainer Hedrich, Richard Wilson, Sergey Shabala
Software Mentions: 2
Published: about 6 years ago
10.1002/advs.202004846
<i>SPOP</i> and <i>OTUD7A</i> Control <i>EWS–FLI1</i> Protein Stability to Govern Ewing Sarcoma GrowthCited by: 23
Author(s): Siyuan Su, Jianfeng Chen, Yao Jiang, Ying Wang, T. PanduRanga Vital, Jiaming Zhang, Christian Laggner, Kong T. Nguyen, Zhen-Gang Zhu, Alex W. Prevatte, Nelson W. Barker, Laura E. Herring, Ian J. Davis, Pengda Liu
Software Mentions: 2
Published: about 5 years ago
10.3390/ijms21051659
The ArathEULS3 Lectin Ends up in Stress Granules and Can Follow an Unconventional Route for SecretionCited by: 13
Author(s): Malgorzata Dubiel, Tibo De Coninck, Vinicius Jose Da Silva Osterne, Isabel Verbeke, Daniël Van Damme, Guy Smagghe, Els J.M. Van Damme
Software Mentions: 2
Published: over 6 years ago
10.3390/ijms20235911
Global Proteomic Analysis Reveals Widespread Lysine Succinylation in Rice SeedlingsCited by: 10
Author(s): Kai Zhang, Ye Xiong, Wenxian Sun, Guo‐Liang Wang, Wende Liu
Software Mentions: 2
Published: over 6 years ago
10.1186/s12864-019-6344-3
Comparison of the molecular and cellular phenotypes of common mouse syngeneic models with human tumorsCited by: 87
Author(s): Wenyan Zhong, Jeremy S. Myers, Fang Wang, Kai Wang, Justin Lucas, Edward Rosfjord, Judy Lucas, Andrea T. Hooper, Sharon Yang, Lu Anna Lemon, Magali Guffroy, Chad May, Jadwiga Bienkowska, Paul A. Rejto
Software Mentions: 2
Published: over 6 years ago
10.1371/journal.pone.0211128
Tolerance and dose-response assessment of subchronic dietary ethoxyquin exposure in Atlantic salmon (Salmo salar L.)Cited by: 6
Author(s): A. Bernhard, Josef Daniel Rasinger, Mónica B. Betancor, M. J. Caballero, Marc H.G. Berntssen, Anne Katrine Lundebye, Robin Ørnsrud
Software Mentions: 2
Published: over 7 years ago
10.3390/ijms20164013
Matrisome Properties of Scaffolds Direct Fibroblasts in Idiopathic Pulmonary FibrosisCited by: 34
Author(s): Linda Elowsson Rendin, Anna Löfdahl, Emma Åhrman, Catharina Müller, Thomas Notermans, Barbora Michaliková, Oskar Rosmark, Xin Zhou, Göran Dellgren, Martin Silverborn, Leif Bjermer, Anders Malmström, Anna‐Karin Larsson‐Callerfelt, Hanna Isaksson, Johan Malmström, Gunilla Westergren‐Thorsson
Software Mentions: 2
Published: almost 7 years ago
10.3390/ijms21114126
Comprehensive Bioinformatics Identifies Key microRNA Players in ATG7-Deficient Lung FibroblastsCited by: 10
Author(s): Stevan D. Stojanović, Maximilian Fuchs, Jan Fiedler, Xiaoyan Ke, Anna‐Katharina Meinecke, Annette Just, Andreas Pich, Thomas Thum, Meik Kunz
Software Mentions: 2
Published: about 6 years ago
10.3390/ijms18112419
Comparative Proteomic Analysis of Lysine Acetylation in Fish CIK Cells Infected with AquareovirusCited by: 11
Author(s): Hongbo Guo, Jie Zhang, Yaping Wang, Chen Bu, Yanyan Zhou, Fang Qin
Software Mentions: 2
Published: over 8 years ago
10.3390/ijms19010296
Preservation Method and Phosphate Buffered Saline Washing Affect the Acute Myeloid Leukemia Proteome.Cited by: 3
Author(s): Rebecca Wangen, Elise Aasebø, Andrea Trentani, Stein Ove Døskeland, Øystein Bruserud, Frode Selheim, Maria Hernandez-Valladares
Software Mentions: 2
Published: over 8 years ago
10.7554/eLife.60480
Chemical genetics and proteome-wide site mapping reveal cysteine MARylation by PARP-7 on immune-relevant protein targetsCited by: 37
Author(s): Kelsie M Rodriguez, Sara C. Buch-Larsen, Ilsa T Kirby, Ivan Rodriguez Siordia, David Hutin, Marit Rasmussen, Denis M. Grant, Larry L. David, Jason Matthews, Michael L. Nielsen, Michael S. Cohen
Software Mentions: 2
Published: over 5 years ago
10.7554/eLife.61816
Proteomics reveals synergy between biomass degrading enzymes and inorganic Fenton chemistry in leaf-cutting ant coloniesCited by: 7
Author(s): Morten Schiøtt, Jacobus J. Boomsma
Software Mentions: 2
Published: over 5 years ago
10.3390/ijms19124123
High Throughput Chemical Screening Reveals Multiple Regulatory Proteins on FOXA1 in Breast Cancer Cell LinesCited by: 7
Author(s): Shixiong Wang, Sachin Kumar Singh, Madhumohan R. Katika, Sandra López-Avilés, Antoni Hurtado
Software Mentions: 2
Published: over 7 years ago
10.7150/thno.37623
Comprehensive characterization of the phosphoproteome of gastric cancer from endoscopic biopsy specimensCited by: 19
Author(s): Yuichi Abe, Hidekazu Hirano, Hirokazu Shoji, Asa Tada, Junko Isoyama, Akemi Kakudo, Daigo Gunji, Kazufumi Honda, Narikazu Boku, Jun Adachi, Takeshi Tomonaga
Software Mentions: 2
Published: over 6 years ago
10.1371/journal.pone.0244699
Proteomic identification of the UDP-GlcNAc: PI α1–6 GlcNAc-transferase subunits of the glycosylphosphatidylinositol biosynthetic pathway of Trypanosoma bruceiCited by: 3
Author(s): Zhe Ji, Michele Tinti, Michael A. J. Ferguson
Software Mentions: 2
Published: about 5 years ago
10.1371/journal.pone.0094257
Alteration of Protein Levels during Influenza Virus H1N1 Infection in Host Cells: A Proteomic Survey of Host and Virus Reveals Differential DynamicsCited by: 39
Author(s): Susann Kummer, Max Flöttmann, Björn Schwanhäußer, Christian Sieben, Michael Veit, Matthias Selbach, Edda Klipp, Andreas Herrmann
Software Mentions: 2
Published: about 12 years ago
10.1371/journal.pone.0140036
In-Depth, Label-Free Analysis of the Erythrocyte Cytoplasmic Proteome in Diamond Blackfan Anemia Identifies a Unique Inflammatory SignatureCited by: 25
Author(s): Esther N. Pesciotta, Hieu Lam, Andrew V. Kossenkov, Jingping Ge, Louise C. Showe, Philip J. Mason, Monica Bessler, David W. Speicher
Software Mentions: 2
Published: over 10 years ago
10.1186/s13395-020-00226-5
High-throughput proteomics fiber typing (ProFiT) for comprehensive characterization of single skeletal muscle fibersCited by: 24
Author(s): Sebastian Kallabis, Lena Abraham, Stefan Müller, Verena Dzialas, Clara Türk, Janica L. Wiederstein, Theresa Bock, Hendrik Nolte, Leonardo Nogara, Bert Blaauw, Thomas Braun, Marcus Krüger
Software Mentions: 2
Published: about 6 years ago
10.1186/s13287-018-0867-4
Early passaging of mesenchymal stem cells does not instigate significant modifications in their immunological behaviorCited by: 26
Author(s): Niketa Sareen, Glen Lester Sequiera, Rakesh Chaudhary, Ejlal Abu‐El‐Rub, Subir Roy Chowdhury, Vikram Sharma, Arun Surendran, Meenal Moudgil, Paul Fernyhough, Amir Ravandi, Sanjiv Dhingra
Software Mentions: 2
Published: about 8 years ago
10.1016/j.str.2017.04.005
The Architecture of the Anbu Complex Reflects an Evolutionary Intermediate at the Origin of the Proteasome SystemCited by: 11
Author(s): Adrian C. D. Fuchs, Vikram Alva, Lorena Maldoner, R. Albrecht, M.D. Hartmann, Joerg Martin
Software Mentions: 2
Published: about 9 years ago
10.1371/journal.pone.0161513
Preliminary Validation of a High Docosahexaenoic Acid (DHA) and -Linolenic Acid (ALA) Dietary Oil Blend: Tissue Fatty Acid Composition and Liver Proteome Response in Atlantic Salmon (Salmo salar) SmoltsCited by: 8
Author(s): Waldo G. Nuez-Ortín, Chris Carter, Richard Wilson, Ira Cooke, Peter D. Nichols
Software Mentions: 2
Published: almost 10 years ago
10.1038/s41598-021-84274-x
Comparison of plasma and cerebrospinal fluid proteomes identifies gene products guiding adult neurogenesis and neural differentiation in birdsCited by: 1
Author(s): Eleni Voukali, Nithya Kuttiyarthu Veetil, Pavel Němec, Pavel Stopka, Michal Vinkler
Software Mentions: 2
Published: over 5 years ago
10.1038/s41598-020-74288-2
Cell-free DNA in plasma as an essential immune system regulatorCited by: 19
Author(s): Marie Korabečná, Alžběta Zinková, Iva Brynychova, Blanka Chylíková, Petr Přikryl, Lucie Šedová, Pavel Neužil, Ondřej Šeda
Software Mentions: 2
Published: over 5 years ago
10.1111/apha.13496
Exercise‐dependent increases in protein synthesis are accompanied by chromatin modifications and increased MRTF‐SRF signallingCited by: 23
Author(s): Francesca Solagna, Leonardo Nogara, Kenneth A. Dyar, Franziska Greulich, Ashfaq Ali Mir, Clara Türk, Theresa Bock, Alessia Geremia, Martina Baraldo, Roberta Sartori, Jean Farup, N. Henriette Uhlenhaut, Kristian Vissing, Marcus Krüger, Bert Blaauw
Software Mentions: 2
Published: about 6 years ago
10.1038/s41598-020-77535-8
Proteomics analysis of serum small extracellular vesicles for the longitudinal study of a glioblastoma multiforme mouse modelCited by: 11
Author(s): Federica Anastasi, Francesco Greco, Marialaura Dilillo, Eleonora Vannini, Valentina Cappello, Laura Baroncelli, Mario Costa, Mauro Gemmi, Matteo Caleo, Liam A. McDonnell
Software Mentions: 2
Published: over 5 years ago
10.1038/s41598-021-92931-4
Overlapping regions of Caf20 mediate its interactions with the mRNA-5′cap-binding protein eIF4E and with ribosomesCited by: 4
Author(s): Ebelechukwu C. Nwokoye, Eiman AlNaseem, Robert A. Crawford, Lydia M. Castelli, Martin D. Jennings, Christopher J. Kershaw, Graham D. Pavitt
Software Mentions: 2
Published: almost 5 years ago
10.1371/journal.pntd.0008282
Differentiation-dependent susceptibility of human muscle cells to Zika virus infectionCited by: 11
Author(s): Vincent Legros, Patricia Jeannin, Julien Burlaud‐Gaillard, Thibault Chaze, Quentin Giai Gianetto, Gillian Butler‐Browne, Vincent Mouly, Jim Zoladek, Philippe V. Afonso, Mariela-Natacha Gonzàlez, Mariette Matondo, Ingo Riederer, Philippe Roingeard, Antoine Gessain, Valérie Choumet, Pierre‐Emmanuel Ceccaldi
Software Mentions: 2
Published: almost 6 years ago
10.1038/s41598-020-70393-4
The proteomic analysis of breast cell line exosomes reveals disease patterns and potential biomarkersCited by: 69
Author(s): Yousef Risha, Zoran Minić, Shahrokh M. Ghobadloo, Maxim V. Berezovski
Software Mentions: 2
Published: almost 6 years ago
10.1038/s41598-020-70565-2
Kinetic analysis of effects of temperature and time on the regulation of venom expression in Bungarus multicinctusCited by: 10
Author(s): Xiao Yin, Shuai Guo, Jihai Gao, Lu Luo, Xuejiao Liao, Mingqian Li, He Su, Zhixing Huang, Jiang Xu, Jin Pei, Shilin Chen
Software Mentions: 2
Published: almost 6 years ago
10.1371/journal.pntd.0009132
Nucleotide sugar biosynthesis occurs in the glycosomes of procyclic and bloodstream form Trypanosoma bruceiCited by: 9
Author(s): Maria Lucia S. Güther, Alan R. Prescott, Sabine Kuettel, Michele Tinti, Michael A. J. Ferguson
Software Mentions: 2
Published: over 5 years ago
10.1038/s41598-020-68985-1
A benzimidazole inhibitor attenuates sterile inflammation induced in a model of systemic autoinflammation in female miceCited by: 4
Author(s): Federica Agliano, Keaton Karlinsey, Michael Ragazzi, Antoine Ménoret, Anthony T. Vella
Software Mentions: 2
Published: almost 6 years ago
10.1186/s12864-016-3432-5
Proteomics informed by transcriptomics for characterising active transposable elements and genome annotation in Aedes aegyptiCited by: 52
Author(s): Kevin Maringer, Amjad Yousuf, Kate J Heesom, Jun Fan, David A. Lee, Ana Fernández-Sesma, Conrad Bessant, David A. Matthews, Andrew D. Davidson
Software Mentions: 2
Published: over 9 years ago
10.1371/journal.pntd.0009512
Human immune response against salivary antigens of Simulium damnosum s.l.: A new epidemiological marker for exposure to blackfly bites in onchocerciasis endemic areasCited by: 2
Author(s): Laura Willen, Marı́a-Gloria Basáñez, Vít Dvořák, Francis B. D. Veriegh, Frank Twum Aboagye, Bright Idun, Maha E. Osman, Mike Y. Osei-Atweneboana, Orin Courtenay, Petr Volf
Software Mentions: 2
Published: almost 5 years ago
10.3390/ijms20123073
Comparative Integrated Omics Analysis of the Hfq Regulon in Bordetella pertussisCited by: 10
Author(s): Ana Dienstbier, Fabian Amman, Daniel Štipl, Denisa Petráčková, Branislav Večerek
Software Mentions: 2
Published: almost 7 years ago
10.1038/s41598-020-58740-x
Protein sorting into protein bodies during barley endosperm development is putatively regulated by cytoskeleton members, MVBs and the HvSNF7sCited by: 10
Author(s): Valentin Roustan, Julia Hilscher, Marieluise Weidinger, Siegfried Reipert, Azita Shabrangy, Claudia Gebert, Bianca Dietrich, Georgi Dermendjiev, Madeleine Schnurer, Pierre Jean Roustan, Eva Stöger, Verena Ibl
Software Mentions: 2
Published: over 6 years ago
10.1038/s41598-019-50575-5
Changes in the microsomal proteome of tomato fruit during ripeningCited by: 17
Author(s): Daniela Pontiggia, Francesco Spinelli, Claudia Fabbri, Valerio Licursi, Rodolfo Negri, Giulia De Lorenzo, Benedetta Mattei
Software Mentions: 2
Published: over 6 years ago
10.1038/s41598-020-59163-4
Chronic irradiation of human cells reduces histone levels and deregulates gene expressionCited by: 17
Author(s): Donna Lowe, Mareike Herzog, Thorsten Mosler, Howard A. Cohen, Sarah Felton, Petra Beli, Ken Raj, Yaron Galanty, Stephen Jackson
Software Mentions: 2
Published: over 6 years ago
10.1038/s41598-019-43328-x
ALK4/5-dependent TGF-β signaling contributes to the crosstalk between neurons and microglia following axonal lesionCited by: 8
Author(s): Antonella Raffo-Romero, Tanina Arab, Christelle Van Camp, Quentin Lemaire, Maxence Wisztorski, Julien Franck, Soulaimane Aboulouard, Françoise Le Marrec-Croq, Pierre-Éric Sautière, Jacopo Vizioli, Michel Salzet, Christophe Lefebvre
Software Mentions: 2
Published: about 7 years ago
10.1038/s41598-019-47829-7
Protein Complex Identification and quantitative complexome by CN-PAGECited by: 22
Author(s): Michał Górka, Corné Swart, Beata Siemiątkowska, Silvia Martínez-Jaime, Aleksandra Skirycz, Sebastian Streb, Alexander Graf
Software Mentions: 2
Published: almost 7 years ago
10.1038/s41598-020-58397-6
Active nuclear import of the deacetylase Sirtuin-2 is controlled by its C-terminus and importinsCited by: 19
Author(s): Matthew J. G. Eldridge, Jorge A. Pereira, Francis Impens, Mélanie Hamon
Software Mentions: 2
Published: over 6 years ago
10.1186/s12861-018-0177-1
Short term optical defocus perturbs normal developmental shifts in retina/RPE protein abundanceCited by: 11
Author(s): Nina Riddell, Pierre Faou, Sheila G. Crewther
Software Mentions: 2
Published: almost 8 years ago
10.1038/s41598-019-42436-y
Biomarkers of post-discharge mortality among children with complicated severe acute malnutritionCited by: 43
Author(s): James M. Njunge, Agnes Gwela, Nelson Kibinge, Moses Ngari, Lydia Nyamako, Emily Nyatichi, Johnstone Thitiri, Gerard Bryan Gonzales, Robert Bandsma, Judd L. Walson, Evelyn Gitau, James A. Berkley
Software Mentions: 2
Published: about 7 years ago
10.1371/journal.pgen.1007514
Regulation of the opposing (p)ppGpp synthetase and hydrolase activities in a bifunctional RelA/SpoT homologue from Staphylococcus aureusCited by: 58
Author(s): Fabio Lino Gratani, Petra Horvatek, Tobias Geiger, Marina Borisova, Christoph Mayer, Iwan Grin, Samuel Wagner, Wieland Steinchen, Gert Bange, Ana Velić, Boris Maček, Christiane Wolz
Software Mentions: 2
Published: almost 8 years ago
10.1038/s41598-018-23505-0
Proteomic analysis of plasma extracellular vesicles reveals mitochondrial stress upon HTLV-1 infectionCited by: 22
Author(s): Patricia Jeannin, Thibault Chaze, Quentin Giai Gianetto, Mariette Matondo, Olivier Gout, Antoine Gessain, Philippe V. Afonso
Software Mentions: 2
Published: about 8 years ago
10.1038/s41598-019-43154-1
An Integrated Chemical Proteomics Approach for Quantitative Profiling of Intracellular ADP-RibosylationCited by: 26
Author(s): Karunakaran A. Kalesh, Saulius Lukauskas, Annabel Borg, Ambrosius P. Snijders, Vinay Ayyappan, Anthony K.L. Leung, Dorian O. Haskard, Peter A. DiMaggio
Software Mentions: 2
Published: about 7 years ago
10.1038/s41598-020-59412-6
Label-free quantitative proteomic analysis of M. longissimus dorsi from cattle during dietary restriction and subsequent compensatory growthCited by: 6
Author(s): Yvonne Mullins, Kate Keogh, David A. Kenny, A. K. Kelly, Padraig O’ Boyle, Sinéad M. Waters
Software Mentions: 2
Published: over 6 years ago
10.1038/s41598-018-19530-8
APLP1 is endoproteolytically cleaved by γ-secretase without previous ectodomain sheddingCited by: 22
Author(s): Linda Schauenburg, Filip Liebsch, Murat Eravci, Magnus C. Mayer, Christoph Weise, Gerhard Multhaup
Software Mentions: 2
Published: over 8 years ago
10.1016/j.molcel.2016.11.001
A SUMO-Dependent Protein Network Regulates Chromosome Congression during Oocyte MeiosisCited by: 66
Author(s): Federico Pelisch, Triin Tammsalu, Bin Wang, Ellis Jaffray, Anton Gartner, Ronald T. Hay
Software Mentions: 2
Published: over 9 years ago
10.1371/journal.pgen.1007795
A single class of ARF GTPase activated by several pathway-specific ARF-GEFs regulates essential membrane traffic in ArabidopsisCited by: 25
Author(s): Manoj K. Singh, Sandra Richter, Hauke Beckmann, Marika Kientz, York‐Dieter Stierhof, Nadine Anders, Florian Fäßler, Michael L. Nielsen, Christian Knöll, Alexis Thomann, Mirita Franz‐Wachtel, Boris Maček, Karen Skriver, Peter Pimpl, Gerd Jürgens
Software Mentions: 2
Published: over 7 years ago
10.1371/journal.pgen.1009071
The RSC (Remodels the Structure of Chromatin) complex of Candida albicans shows compositional divergence with distinct roles in regulating pathogenic traitsCited by: 6
Author(s): Vinutha K. Balachandra, Jiyoti Verma, Madhu Shankar, Timothy M. Tucey, Ana Traven, Ralf B. Schittenhelm, Santanu Ghosh
Software Mentions: 2
Published: over 5 years ago
10.1038/s41598-017-17756-6
Proteome-wide Analysis of Lysine 2-hydroxyisobutyrylation in Developing Rice (Oryza sativa) SeedsCited by: 50
Author(s): Xiaoxi Meng, Shihai Xing, Loida M. Perez, Xiaojun Peng, Zhao QingYong, Edilberto D. Redoña, Cailin Wang, Zhaohua Peng
Software Mentions: 2
Published: over 8 years ago
10.1038/s41598-018-25059-7
Trafficking, localization and degradation of the Na+,HCO3− co-transporter NBCn1 in kidney and breast epithelial cellsCited by: 8
Author(s): Christina W. Olesen, Jens Vogensen, Ida Axholm, Marc Severin, Julie Schnipper, Isabella Skandorff Pedersen, Jakob Hjorth von Stemann, Jacob M. Schrøder, Dan Ploug Christensen, Stine Falsig Pedersen
Software Mentions: 2
Published: about 8 years ago
10.1016/j.molcel.2019.08.005
Polyamines Control eIF5A Hypusination, TFEB Translation, and Autophagy to Reverse B Cell SenescenceCited by: 189
Author(s): Hanlin Zhang, Ghada Alsaleh, Jack Feltham, Yizhe Sun, Gennaro Napolitano, Thomas Riffelmacher, P. David Charles, Lisa Frau, Philip Hublitz, Zhanru Yu, Shabaz Mohammed, Andrea Ballabio, Stefan Balabanov, Jane Mellor, Anna Katharina Simon
Software Mentions: 2
Published: over 6 years ago
10.1042/BCJ20200309
Use of the Polo-like kinase 4 (PLK4) inhibitor centrinone to investigate intracellular signalling networks using SILAC-based phosphoproteomicsCited by: 19
Author(s): Dominic P. Byrne, Christopher J. Clarke, Philip Brownridge, Anton Kalyuzhnyy, Simon Perkins, Amy E. Campbell, David Mason, Andrew R. Jones, Patrick A. Eyers
Software Mentions: 2
Published: almost 6 years ago
10.1371/journal.ppat.1008822
Shigella hijacks the exocyst to cluster macropinosomes for efficient vacuolar escapeCited by: 20
Author(s): Yuen-Yan Chang, Virginie Stévenin, Magalie Duchateau, Quentin Giai Gianetto, Véronique Hourdel, Cristina S. Rodrigues, Mariette Matondo, Norbert Reiling, Jost Enninga
Software Mentions: 2
Published: almost 6 years ago
10.1371/journal.pcbi.1005725
Deciphering HLA-I motifs across HLA peptidomes improves neo-antigen predictions and identifies allostery regulating HLA specificityCited by: 184
Author(s): Michal Bassani-Sternberg, Chloé Chong, Philippe Guillaume, Marthe Solleder, HuiSong Pak, Philippe O. Gannon, Lana E. Kandalaft, George Coukos, David Gfeller
Software Mentions: 2
Published: almost 9 years ago
10.1042/BCJ20200930
Development of a multiplexed targeted mass spectrometry assay for LRRK2-phosphorylated Rabs and Ser910/Ser935 biomarker sitesCited by: 26
Author(s): Raja Sekhar Nirujogi, Francesca Tonelli, Matthew Taylor, Paweł Lis, Alexander Zimprich, Esther Sammler, Dario R. Alessi
Software Mentions: 2
Published: over 5 years ago
10.1371/journal.ppat.1006980
Viral targeting of TFIIB impairs de novo polymerase II recruitment and affects antiviral immunityCited by: 13
Author(s): Darya A. Haas, Arno Meiler, Katharina Geiger, Carola Vogt, Ellen Preuß, Georg Kochs, Andreas Pichlmair
Software Mentions: 2
Published: about 8 years ago
10.1371/journal.ppat.1008129
Organising the cell cycle in the absence of transcriptional control: Dynamic phosphorylation co-ordinates the Trypanosoma brucei cell cycle post-transcriptionallyCited by: 31
Author(s): Corinna Benz, Michael D. Urbaniak
Software Mentions: 2
Published: over 6 years ago
10.1038/s41598-020-63926-4
A proximity-labeling proteomic approach to investigate invadopodia molecular landscape in breast cancer cellsCited by: 12
Author(s): Sylvie Thuault, Claire Mamelonet, Joëlle Salameh, Kevin Ostacolo, Brice Chanez, Danièle Salaün, Emilie Baudelet, Stéphane Audebert, Luc Camoin, Ali Badache
Software Mentions: 2
Published: about 6 years ago
10.1242/jcs.154880
Tyrosine phosphorylation of WIP releases bound WASP and impairs podosome assembly in macrophagesCited by: 15
Author(s): Vineetha Vijayakumar, James Monypenny, Xing Judy Chen, Laura M. Machesky, Sérgio Lilla, Adrian J. Thrasher, Inés M. Antón, Yolanda Calle, Gareth E. Jones
Software Mentions: 2
Published: over 12 years ago
10.1371/journal.pbio.3000774
Cell–substrate adhesion drives Scar/WAVE activation and phosphorylation by a Ste20-family kinase, which controls pseudopod lifetimeCited by: 24
Author(s): Shashi P. Singh, Peter A. Thomason, Sérgio Lilla, Matthias Schaks, Qian Tang, Bruce L. Goode, Laura M. Machesky, Klemens Rottner, Robert H. Insall
Software Mentions: 2
Published: almost 6 years ago
10.1242/jcs.257188
Ribosome quality control activity potentiates vaccinia virus protein synthesis during infectionCited by: 17
Author(s): Elayanambi Sundaramoorthy, Andrew P Ryan, Amit Fulzele, Marilyn Leonard, Matthew D. Daugherty, Eric J. Bennett
Software Mentions: 2
Published: about 5 years ago
10.1186/s12943-018-0890-1
Proteogenomic characterization and comprehensive integrative genomic analysis of human colorectal cancer liver metastasisCited by: 56
Author(s): Yu‐Shui Ma, Tao Huang, Xiaoming Zhong, Hongwei Zhang, Xianling Cong, Hong Xu, Gai‐Xia Lu, Fei Yu, Sheng Xue, Zhongwei Lv, Da Fu
Software Mentions: 2
Published: over 7 years ago
10.1111/jcmm.12407
Establishment of a proteome profile and identification of molecular markers for mouse spermatogonial stem cellsCited by: 27
Author(s): Quan Zhou, Yueshuai Guo, Bo Zheng, Binbin Shao, Min Jiang, Gaigai Wang, Tao Zhou, Lei Wang, Zuomin Zhou, Xuejiang Guo, Xiaoyan Huang
Software Mentions: 2
Published: over 11 years ago
10.3390/plants9101370
Comparative Physiological and Proteomic Analysis Reveals Different Involvement of Proteins during Artificial Aging of Siberian Wildrye SeedsCited by: 5
Author(s): Lei Xiong, Wenhui Liu, Junlong Zhao, Minghong You, Chaohui Xiong, Yi Xiong, Yanli Xiong, Qingqing Yu, Shiqie Bai, Xiao Ma
Software Mentions: 2
Published: over 5 years ago
10.1002/jcsm.12496
Skeletal muscle mTORC1 regulates neuromuscular junction stabilityCited by: 38
Author(s): Martina Baraldo, Alessia Geremia, Marco Pirazzini, Leonardo Nogara, Francesca Solagna, Clara Türk, Hendrik Nolte, Vanina Romanello, Aram Megighian, Simona Boncompagni, Marcus Krüger, Marco Sandri, Bert Blaauw
Software Mentions: 2
Published: over 6 years ago
10.1074/jbc.RA120.015468
PFN2 and NAA80 cooperate to efficiently acetylate the N-terminus of actinCited by: 16
Author(s): Rasmus Ree, L. A. P. De Kind, Anna Kaziales, Sylvia Varland, Minglu Dai, Klaus Richter, Adrian Drazic, Thomas Arnesen
Software Mentions: 2
Published: over 5 years ago
10.1007/s00726-021-03006-7
Gamma-gliadin specific celiac disease antibodies recognize p31-43 and p57-68 alpha gliadin peptides in deamidation related manner as a result of cross-reactionCited by: 7
Author(s): Ádám Diós, Rita Elek, Ildikò Szabó, Szilvia Horváth, Judit Gyimesi, Róbert Király, Katharina Werkstetter, Sibylle Koletzko, László Fésüs, Ilma Rita Korponay-Szabó
Software Mentions: 2
Published: about 5 years ago
10.1074/jbc.M115.645283
Organization of Subunits in the Membrane Domain of the Bovine F-ATPase Revealed by Covalent Cross-linkingCited by: 38
Author(s): Jennifer Lee, Shuzhe Ding, Thomas B Walpole, Andrew N Holding, M.G. Montgomery, Ian M. Fearnley, John E. Walker
Software Mentions: 2
Published: about 11 years ago
10.1083/jcb.201802151
Xrp1 genetically interacts with the ALS-associated FUS orthologue caz and mediates its toxicityCited by: 20
Author(s): Moushami Mallik, Marica Catinozzi, Clemens Hug, Li Zhang, Marina Wagner, Julia Bussmann, Jonas Bittern, Sina Mersmann, Christian Klämbt, Hannes C.A. Drexler, Martijn Huynen, Juan M. Vaquerizas, Erik Storkebaum
Software Mentions: 2
Published: almost 8 years ago
10.1371/journal.ppat.1004623
Characterization of the Mycobacterial Acyl-CoA Carboxylase Holo Complexes Reveals Their Functional Expansion into Amino Acid CatabolismCited by: 17
Author(s): M.T. Ehebauer, Michael Zimmermann, Arjen J. Jakobi, Elke E. Noens, Daniel Laubitz, B. Cichocki, Hédia Marrakchi, Marie‐Antoinette Lanéelle, Mamadou Daffé, Carsten Sachse, Andrzej Dziembowski, Uwe Sauer, Matthias Wilmanns
Software Mentions: 2
Published: over 11 years ago
10.1109/ACCESS.2020.3047588
Methods for Proteogenomics Data Analysis, Challenges, and Scalability Bottlenecks: A SurveyCited by: 12
Author(s): Muhammad Usman Tariq, Muhammad Haseeb, Mohammed Aledhari, Rehma Razzak, Reza M. Parizi, Fahad Saeed
Software Mentions: 2
Published: over 5 years ago
10.1002/glia.24032
Regulation of aquaporin‐4 expression in the central nervous system investigated using M23‐AQP4 null mouseCited by: 10
Author(s): Francesco Pisani, Laura Simone, Maria Grazia Mola, Manuela De Bellis, Antonio Frigeri, Grazia Paola Nicchia, María Svelto
Software Mentions: 2
Published: about 5 years ago
10.1016/j.immuni.2017.11.016
Oncogenic RAS Signaling Promotes Tumor Immunoresistance by Stabilizing PD-L1 mRNACited by: 416
Author(s): Matthew A. Coelho, Sophie de Carné Trécesson, Sareena Rana, Davide Zecchin, Christopher Moore, Míriam Molina‐Arcas, Philip East, Bradley Spencer‐Dene, Emma Nye, Karin Barnouin, Ambrosius P. Snijders, Wi S. Lai, Perry J. Blackshear, Julian Downward
Software Mentions: 2
Published: over 8 years ago
10.1186/s13229-017-0160-x
Developmental disruption of amygdala transcriptome and socioemotional behavior in rats exposed to valproic acid prenatallyCited by: 41
Author(s): Chris Barrett, Thomas Hennessey, Katelyn M. Gordon, Steven J. Ryan, Morgan L. McNair, Kerry J. Ressler, Donald G. Rainnie
Software Mentions: 2
Published: almost 9 years ago
10.1016/j.gpb.2020.06.012
Screening of Potential Biomarkers for Gastric Cancer with Diagnostic Value Using Label-free Global Proteome AnalysisCited by: 12
Author(s): Yongxi Song, Jun Wang, Jingwei Sun, Xiaowan Chen, Jinxin Shi, Zhonghua Wu, Dehao Yu, Fei Zhang, Zhenning Wang
Software Mentions: 2
Published: over 5 years ago
10.7717/peerj.9988
Analysis of the infant gut microbiome reveals metabolic functional roles associated with healthy infants and infants with atopic dermatitis using metaproteomicsCited by: 10
Author(s): Amornthep Kingkaw, Massalin Nakphaichit, Narissara Suratannon, Sunee Nitisinprasert, Chantha Wongoutong, Pantipa Chatchatee, Sucheewin Krobthong, Sawanya Charoenlappanit, Sittiruk Roytrakul, Wanwipa Vongsangnak
Software Mentions: 2
Published: over 5 years ago
10.7717/peerj.4599
Phosphoproteomic insights into processes influenced by the kinase-like protein DIA1/C3orf58Cited by: 7
Author(s): Agnieszka Hareza, Magda Bakun, Bianka Świderska, Małgorzata Dudkiewicz, Alicja Koscielny, Anna T. Bajur, Jacek Jaworski, Michał Dadlez, Krzysztof Pawłowski
Software Mentions: 2
Published: about 8 years ago
10.1186/s12870-016-0900-7
Modulation of plant growth in vivo and identification of kinase substrates using an analog-sensitive variant of CYCLIN-DEPENDENT KINASE A;1Cited by: 13
Author(s): Hirofumi Harashima, Nico Dißmeyer, Philippe Hammann, Yuko Nomura, Katharina Kramer, Hirofumi Nakagami, Arp Schnittger
Software Mentions: 2
Published: over 9 years ago
10.7717/peerj.2433
Metaproteomics of saliva identifies human protein markers specific for individuals with periodontitis and dental caries compared to orally healthy controlsCited by: 53
Author(s): Daniel Belstrøm, Rosa Rakownikow Jersie-Christensen, David Lyon, Christian Damgaard, Lars Juhl Jensen, Palle Holmstrup, Jesper V. Olsen
Software Mentions: 2
Published: almost 10 years ago
10.1186/s13059-018-1533-y
Dynamics and functional interplay of histone lysine butyrylation, crotonylation, and acetylation in rice under starvation and submergenceCited by: 70
Author(s): Yue Lu, Qiutao Xu, Yuan Liu, Yue Yu, Zhongyi Cheng, Yu Zhao, Dao‐Xiu Zhou
Software Mentions: 2
Published: over 7 years ago
10.1186/s40478-019-0736-0
Transcriptome and proteome profiling of neural stem cells from the human subventricular zone in Parkinson’s diseaseCited by: 27
Author(s): Vanessa Donega, Saskia M. Burm, Miriam E. van Strien, Emma J. van Bodegraven, Iryna Paliukhovich, Hanneke Geut, Wilma D. J. van de Berg, Ka Wan Li, August B. Smit, Onur Basak, Elly M. Hol
Software Mentions: 2
Published: about 7 years ago
10.1371/journal.ppat.1004835
Conserved Streptococcus pneumoniae Spirosomes Suggest a Single Type of Transformation Pilus in CompetenceCited by: 26
Author(s): Raphaël Laurenceau, Petya V. Krasteva, Amy Diallo, Sahra Ouarti, Magalie Duchateau, Christian Malosse, Julia Chamot‐Rooke, Rémi Fronzes
Software Mentions: 2
Published: about 11 years ago
10.3389/fpls.2018.00775
Using RT-qPCR, Proteomics, and Microscopy to Unravel the Spatio-Temporal Expression and Subcellular Localization of Hordoindolines Across Development in Barley EndospermCited by: 12
Author(s): Azita Shabrangy, Valentin Roustan, Siegfried Reipert, Marieluise Weidinger, Pierre-Jean Roustan, Eva Stöger, Wolfram Weckwerth, Verena Ibl
Software Mentions: 2
Published: about 8 years ago