cran: Andromeda | Projects | Ecosyste.ms: Papers

10.3389/fpls.2018.00056

Auxin-to-Gibberellin Ratio as a Signal for Light Intensity and Quality in Regulating Soybean Growth and Matter Partitioning
Cited by: 53
Author(s): Feng Yang, Yuanfang Fan, Xiaoling Wu, Yajiao Cheng, Qinlin Liu, Lingyang Feng, Junxu Chen, Zhong Lin Wang, Xiaochun Wang, Taiwen Yong, Weiguo Liu, Jiang Liu, Junbo Du, Kai Shu, Wenyu Yang
Software Mentions: 2
Published: over 8 years ago

10.1042/BCJ20200930

Development of a multiplexed targeted mass spectrometry assay for LRRK2-phosphorylated Rabs and Ser910/Ser935 biomarker sites
Cited by: 26
Author(s): Raja Sekhar Nirujogi, Francesca Tonelli, Matthew Taylor, Paweł Lis, Alexander Zimprich, Esther Sammler, Dario R. Alessi
Software Mentions: 2
Published: over 5 years ago

10.3389/fpls.2018.00775

Using RT-qPCR, Proteomics, and Microscopy to Unravel the Spatio-Temporal Expression and Subcellular Localization of Hordoindolines Across Development in Barley Endosperm
Cited by: 12
Author(s): Azita Shabrangy, Valentin Roustan, Siegfried Reipert, Marieluise Weidinger, Pierre-Jean Roustan, Eva Stöger, Wolfram Weckwerth, Verena Ibl
Software Mentions: 2
Published: about 8 years ago

10.3389/fpls.2017.01669

Improved Quantitative Plant Proteomics via the Combination of Targeted and Untargeted Data Acquisition
Cited by: 15
Author(s): Gene Hart‐Smith, Rodrigo S. Reis, Peter M. Waterhouse, Marc R. Wilkins
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.pbio.3000774

Cell–substrate adhesion drives Scar/WAVE activation and phosphorylation by a Ste20-family kinase, which controls pseudopod lifetime
Cited by: 24
Author(s): Shashi P. Singh, Peter A. Thomason, Sérgio Lilla, Matthias Schaks, Qian Tang, Bruce L. Goode, Laura M. Machesky, Klemens Rottner, Robert H. Insall
Software Mentions: 2
Published: almost 6 years ago

10.3389/fpls.2021.622795

Magnetic Field Induced Changes in the Shoot and Root Proteome of Barley (Hordeum vulgare L.)
Cited by: 7
Author(s): Azita Shabrangy, Arindam Ghatak, Shuang Zhang, Alfred Priller, Palak Chaturvedi
Software Mentions: 2
Published: over 5 years ago

10.3389/fpls.2018.01590

Quantitative Phosphoproteomic and System-Level Analysis of TOR Inhibition Unravel Distinct Organellar Acclimation in Chlamydomonas reinhardtii
Cited by: 28
Author(s): Valentin Roustan, Wolfram Weckwerth
Software Mentions: 2
Published: over 7 years ago

10.1186/s12943-018-0890-1

Proteogenomic characterization and comprehensive integrative genomic analysis of human colorectal cancer liver metastasis
Cited by: 56
Author(s): Yu‐Shui Ma, Tao Huang, Xiaoming Zhong, Hongwei Zhang, Xianling Cong, Hong Xu, Gai‐Xia Lu, Fei Yu, Sheng Xue, Zhongwei Lv, Da Fu
Software Mentions: 2
Published: over 7 years ago

10.3389/fphys.2020.00520

Inflammatory Drivers of Cardiovascular Disease: Molecular Characterization of Senescent Coronary Vascular Smooth Muscle Cells
Cited by: 19
Author(s): Stevan D. Stojanović, Maximilian Fuchs, Meik Kunz, Xiaoyan Ke, Annette Just, Andreas Pich, Johann Bauersachs, Jan Fiedler, Daniel Sedding, Thomas Thum
Software Mentions: 2
Published: about 6 years ago

10.3389/fneur.2017.00110

Phosphoproteome Profiling Reveals Circadian Clock Regulation of Posttranslational Modifications in the Murine Hippocampus
Cited by: 22
Author(s): Cheng‐Kang Chiang, Bo Xu, Neel Mehta, Janice Mayne, Warren Sun, Kai Cheng, Zhibin Ning, Jing Dong, Hanfa Zou, Hai-Ying Mary Cheng, Daniel Figeys
Software Mentions: 2
Published: about 9 years ago

10.3389/fnmol.2018.00345

S-palmitoylation Is Required for the Control of Growth Cone Morphology of DRG Neurons by CNP-Induced cGMP Signaling
Cited by: 13
Author(s): Alexandre Dumoulin, Alina Dagane, Gunnar Dittmar, Fritz G. Rathjen
Software Mentions: 2
Published: over 7 years ago

10.3389/fnins.2019.00143

Cx43-Associated Secretome and Interactome Reveal Synergistic Mechanisms for Glioma Migration and MMP3 Activation
Cited by: 9
Author(s): Qurratulain Aftab, Marc Mesnil, Emmanuel Ojefua, Alisha Poole, Jenna Noordenbos, Pierre‐Olivier Strale, Chris Sitko, Caitlin Le, Nikolay Stoynov, Leonard J. Foster, Wun-Chey Sin, Christian C. Naus, Vincent C. Chen
Software Mentions: 2
Published: about 7 years ago

10.3389/fmicb.2020.594743

Systematic Analysis of Lysine Lactylation in the Plant Fungal Pathogen Botrytis cinerea
Cited by: 37
Author(s): Mingming Gao, Ning Zhang, Wenxing Liang
Software Mentions: 2
Published: over 5 years ago

10.1007/s00726-021-03006-7

Gamma-gliadin specific celiac disease antibodies recognize p31-43 and p57-68 alpha gliadin peptides in deamidation related manner as a result of cross-reaction
Cited by: 7
Author(s): Ádám Diós, Rita Elek, Ildikò Szabó, Szilvia Horváth, Judit Gyimesi, Róbert Király, Katharina Werkstetter, Sibylle Koletzko, László Fésüs, Ilma Rita Korponay-Szabó
Software Mentions: 2
Published: about 5 years ago

10.3389/fmicb.2019.00384

Mixotrophic Growth Under Micro-Oxic Conditions in the Purple Sulfur Bacterium “Thiodictyon syntrophicum”
Cited by: 14
Author(s): Samuel M. Luedin, Nicola Storelli, Francesco Danza, Samuele Roman, Matthias Wittwer, Joël F. Pothier, Mauro Tonolla
Software Mentions: 2
Published: over 7 years ago

10.3389/fnmol.2021.658339

Broad Influence of Mutant Ataxin-3 on the Proteome of the Adult Brain, Young Neurons, and Axons Reveals Central Molecular Processes and Biomarkers in SCA3/MJD Using Knock-In Mouse Model
Cited by: 7
Author(s): Kalina Wiatr, Łukasz Marczak, J. Pérot, Emmanuel Brouillet, Julien Flament, Maciej Figiel
Software Mentions: 2
Published: almost 5 years ago

10.3389/fmicb.2020.00209

Comparative Proteomics of Meat Spoilage Bacteria Predicts Drivers for Their Coexistence on Modified Atmosphere Packaged Meat
Cited by: 18
Author(s): Sandra Kolbeck, Christina Ludwig, Chen Meng, Maik Hilgarth, Rudi F. Vogel
Software Mentions: 2
Published: over 6 years ago

10.1186/s13229-017-0160-x

Developmental disruption of amygdala transcriptome and socioemotional behavior in rats exposed to valproic acid prenatally
Cited by: 41
Author(s): Chris Barrett, Thomas Hennessey, Katelyn M. Gordon, Steven J. Ryan, Morgan L. McNair, Kerry J. Ressler, Donald G. Rainnie
Software Mentions: 2
Published: almost 9 years ago

10.3389/fmicb.2019.03101

Proteomic Investigation Uncovers Potential Targets and Target Sites of Pneumococcal Serine-Threonine Kinase StkP and Phosphatase PhpP
Cited by: 25
Author(s): Claudia Hirschfeld, Alejandro Gómez-Mejía, Jürgen Bartel, Christian Hentschker, Manfred Rohde, Sandra Maaß, Sven Hammerschmidt, Dörte Becher
Software Mentions: 2
Published: over 6 years ago

10.3389/fmicb.2020.564350

Global Proteomic Analysis of Lysine Crotonylation in the Plant Pathogen Botrytis cinerea
Cited by: 7
Author(s): Ning Zhang, Zhenzhou Yang, Wenxing Liang, Mengjie Liu
Software Mentions: 2
Published: over 5 years ago

10.3389/fmicb.2018.02977

Xylem Sap Proteomics Reveals Distinct Differences Between R Gene- and Endophyte-Mediated Resistance Against Fusarium Wilt Disease in Tomato
Cited by: 34
Author(s): Francisco J. de Lamo, Maria E. Constantin, David H. Fresno, Sjef Boeren, Martijn Rep, Frank L. W. Takken
Software Mentions: 2
Published: over 7 years ago

10.3389/fmicb.2014.00432

Characterization of the surfaceome of the metal-reducing bacterium Desulfotomaculum reducens
Cited by: 16
Author(s): Elena Dalla Vecchia, Paul Shao, Elena I. Suvorova, Diego Chiappe, Romain Hamelin, Rizlan Bernier‐Latmani
Software Mentions: 2
Published: almost 12 years ago

10.7717/peerj.2433

Metaproteomics of saliva identifies human protein markers specific for individuals with periodontitis and dental caries compared to orally healthy controls
Cited by: 53
Author(s): Daniel Belstrøm, Rosa Rakownikow Jersie-Christensen, David Lyon, Christian Damgaard, Lars Juhl Jensen, Palle Holmstrup, Jesper V. Olsen
Software Mentions: 2
Published: almost 10 years ago

10.3389/fmicb.2017.02599

Low Concentrations of Vitamin C Reduce the Synthesis of Extracellular Polymers and Destabilize Bacterial Biofilms
Cited by: 61
Author(s): Santosh Pandit, Vaishnavi Ravikumar, Alyaa M. Abdel-Haleem, Abderahmane Derouiche, Venkata Raghavendra Subrahmanya Sar Mokkapati, Carina Sihlbom, Katsuhiko Mineta, Takashi Gojobori, Xin Gao, Fredrik Westerlund, Ivan Mijaković
Software Mentions: 2
Published: over 8 years ago

10.3389/fmicb.2019.00094

Combined Transcriptome and Proteome Analysis of RpoS Regulon Reveals Its Role in Spoilage Potential of Pseudomonas fluorescens
Cited by: 21
Author(s): Xiaoxiang Liu, Jun Xu, Junli Zhu, Peng Du, Aijun Sun
Software Mentions: 2
Published: over 7 years ago

10.1186/s40478-019-0736-0

Transcriptome and proteome profiling of neural stem cells from the human subventricular zone in Parkinson’s disease
Cited by: 27
Author(s): Vanessa Donega, Saskia M. Burm, Miriam E. van Strien, Emma J. van Bodegraven, Iryna Paliukhovich, Hanneke Geut, Wilma D. J. van de Berg, Ka Wan Li, August B. Smit, Onur Basak, Elly M. Hol
Software Mentions: 2
Published: about 7 years ago

10.3389/fmicb.2021.618566

Distinct Human Gut Microbial Taxonomic Signatures Uncovered With Different Sample Processing and Microbial Cell Disruption Methods for Metaproteomic Analysis
Cited by: 10
Author(s): Carmen García-Durán, Raquel Martínez-López, Inés Zapico, Enrique Pérez, Eduardo Romeu, Javier Arroyo, María Luisa Hernáez, Aida Pitarch, Lucía Monteoliva, Concha Gil
Software Mentions: 2
Published: almost 5 years ago

10.3389/fmicb.2021.634366

The Role of Pseudo-Orthocaspase (SyOC) of Synechocystis sp. PCC 6803 in Attenuating the Effect of Oxidative Stress
Cited by: 3
Author(s): Saul Lema A, Marina Klemenčič, Franziska Völlmy, Maarten Altelaar, Christiane Funk
Software Mentions: 2
Published: over 5 years ago

10.3389/fmicb.2020.00189

Loss of the Periplasmic Chaperone Skp and Mutations in the Efflux Pump AcrAB-TolC Play a Role in Acquired Resistance to Antimicrobial Peptides in Salmonella typhimurium
Cited by: 11
Author(s): Gal Kapach, Reut Nuri, Christiane Schmidt, Adi Danin, Shir Ferrera, Alon Savidor, Roman G. Gerlach, Yechiel Shai
Software Mentions: 2
Published: over 6 years ago

10.3389/fmicb.2015.00084

Novel Flp pilus biogenesis-dependent natural transformation
Cited by: 32
Author(s): Angel Angelov, Paul M. P. van Bergen, Florian Nadler, Philipp Hornburg, Antoni Lichev, Maria Übelacker, Fiona Pachl, Bernhard Küster, Wolfgang Liebl
Software Mentions: 2
Published: over 11 years ago

10.3389/fpls.2021.635550

SP3 Protocol for Proteomic Plant Sample Preparation Prior LC-MS/MS
Cited by: 19
Author(s): Kamil Mikulášek, Hana Konečná, David Potěšil, Renata Holánková, Jan Havliš, Zbyněk Zdráhal
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-019-42436-y

Biomarkers of post-discharge mortality among children with complicated severe acute malnutrition
Cited by: 43
Author(s): James M. Njunge, Agnes Gwela, Nelson Kibinge, Moses Ngari, Lydia Nyamako, Emily Nyatichi, Johnstone Thitiri, Gerard Bryan Gonzales, Robert Bandsma, Judd L. Walson, Evelyn Gitau, James A. Berkley
Software Mentions: 2
Published: about 7 years ago

10.3389/fimmu.2020.565484

Prenatal Endotoxin Exposure Induces Fetal and Neonatal Renal Inflammation via Innate and Th1 Immune Activation in Preterm Pigs
Cited by: 8
Author(s): Tik Muk, Pingping Jiang, Allan Stensballe, Kerstin Skovgaard, Per Torp Sangild, Duc Ninh Nguyen
Software Mentions: 2
Published: over 5 years ago

10.3389/fimmu.2020.01981

Biogenesis of HLA Ligand Presentation in Immune Cells Upon Activation Reveals Changes in Peptide Length Preference
Cited by: 7
Author(s): Fabio Marino, Aikaterini Semilietof, Justine Michaux, HuiSong Pak, George Coukos, Markus Müller, Michal Bassani-Sternberg
Software Mentions: 2
Published: almost 6 years ago

10.12688/wellcomeopenres.15421.1

Proteome turnover in the bloodstream and procyclic forms of Trypanosoma brucei measured by quantitative proteomics
Cited by: 26
Author(s): Michele Tinti, Maria Lucia S. Güther, Thomas W. M. Crozier, Angus I. Lamond, Michael A. J. Ferguson
Software Mentions: 2
Published: over 6 years ago

10.3389/fimmu.2020.581070

Plasma Proteome Responses in Salmonid Fish Following Immunization
Cited by: 8
Author(s): Fiona K. Bakke, Milena Mira Monte, David Stead, Dwight R. Causey, Alex Douglas, Daniel J. Macqueen, Helen Dooley
Software Mentions: 2
Published: over 5 years ago

10.3389/fimmu.2021.643441

Comparative Analysis of Global Proteome and Lysine Acetylome Between Naive CD4+ T Cells and CD4+ T Follicular Helper Cells
Cited by: 2
Author(s): Ming Zhao, Sujie Jia, Xiaofei Gao, Hong Qiu, Ruifang Wu, Haijing Wu, Qianjin Lu
Software Mentions: 2
Published: about 5 years ago

10.3389/fimmu.2021.702359

PPE38-Secretion-Dependent Proteins of M. tuberculosis Alter NF-kB Signalling and Inflammatory Responses in Macrophages
Cited by: 3
Author(s): James Gallant, Tiaan Heunis, Caroline G. G. Beltran, Karin Schildermans, Sven C. M. Bruijns, Inge Mertens, Wilbert Bitter, Samantha L. Sampson
Software Mentions: 2
Published: almost 5 years ago

10.3389/fgene.2020.551495

Systematic Identification of Hub Genes in Placenta Accreta Spectrum Based on Integrated Transcriptomic and Proteomic Analysis
Cited by: 5
Author(s): Bingnan Chen, Di Wang, Yue Bian, Jiapo Li, Tian Yang, Na Li, Chong Qiao
Software Mentions: 2
Published: almost 6 years ago

10.1186/s12870-016-0900-7

Modulation of plant growth in vivo and identification of kinase substrates using an analog-sensitive variant of CYCLIN-DEPENDENT KINASE A;1
Cited by: 13
Author(s): Hirofumi Harashima, Nico Dißmeyer, Philippe Hammann, Yuko Nomura, Katharina Kramer, Hirofumi Nakagami, Arp Schnittger
Software Mentions: 2
Published: over 9 years ago

10.7717/peerj.4599

Phosphoproteomic insights into processes influenced by the kinase-like protein DIA1/C3orf58
Cited by: 7
Author(s): Agnieszka Hareza, Magda Bakun, Bianka Świderska, Małgorzata Dudkiewicz, Alicja Koscielny, Anna T. Bajur, Jacek Jaworski, Michał Dadlez, Krzysztof Pawłowski
Software Mentions: 2
Published: about 8 years ago

10.7717/peerj.9988

Analysis of the infant gut microbiome reveals metabolic functional roles associated with healthy infants and infants with atopic dermatitis using metaproteomics
Cited by: 10
Author(s): Amornthep Kingkaw, Massalin Nakphaichit, Narissara Suratannon, Sunee Nitisinprasert, Chantha Wongoutong, Pantipa Chatchatee, Sucheewin Krobthong, Sawanya Charoenlappanit, Sittiruk Roytrakul, Wanwipa Vongsangnak
Software Mentions: 2
Published: over 5 years ago

10.3389/fgene.2020.616435

Multi-Omics Analysis of Diabetic Nephropathy Reveals Potential New Mechanisms and Drug Targets
Cited by: 16
Author(s): Qian Sha, Jinxiu Lyu, Meng Zhao, Haijuan Li, Mengzhe Guo, Qiang Sun
Software Mentions: 2
Published: over 5 years ago

10.3389/fimmu.2021.573266

Pneumolysin Is Responsible for Differential Gene Expression and Modifications in the Epigenetic Landscape of Primary Monocyte Derived Macrophages
Cited by: 5
Author(s): Joby Cole, Adrienn Angyal, Richard D. Emes, Tim Mitchell, Mark J. Dickman, David H. Dockrell
Software Mentions: 2
Published: about 5 years ago

10.3389/fimmu.2020.00033

Molecular Signatures of Neuroinflammation Induced by αSynuclein Aggregates in Microglial Cells
Cited by: 47
Author(s): Satyapriya Sarkar, Eric B. Dammer, Emir Malovic, Abby L. Olsen, Syed Ali Raza, Tianwen Gao, Hailian Xiao, Danielle Oliver, Duc M. Duong, Valerie Joers, Nicholas T. Seyfried, Meixiang Huang, Thomas Kukar, Malú G. Tansey, Anumantha G. Kanthasamy, Srikant Rangaraju
Software Mentions: 2
Published: over 6 years ago

10.3390/v11111023

Investigating the Cellular Transcriptomic Response Induced by the Makona Variant of Ebola Virus in Differentiated THP-1 Cells
Cited by: 5
Author(s): Andrew Bosworth, Stuart Dowall, Stuart D. Armstrong, Xuan Li, Xiaofeng Dong, Christine Bruce, Lisa F. P. Ng, Miles W. Carroll, Roger Hewson, Julian A. Hiscox
Software Mentions: 2
Published: over 6 years ago

10.3389/fncel.2021.662035

Integrative Cell Type-Specific Multi-Omics Approaches Reveal Impaired Programs of Glial Cell Differentiation in Mouse Culture Models of DM1
Cited by: 10
Author(s): Anchel González-Barriga, Louison Lallemant, Diana Mihaela Dincã, Sandra Bráz, Hélène Polvèche, Paul Magneron, Cédric Pionneau, Aline Huguet-Lachon, Jean‐Baptiste Claude, Cérina Chhuon, Ida Chiara Guerrera, Cyril F. Bourgeois, Didier Auboeuf, Geneviève Gourdon, Mário Gomes‐Pereira
Software Mentions: 2
Published: about 5 years ago

10.3389/fendo.2019.00872

Dysregulation of the Mitochondrial Proteome Occurs in Mice Lacking Adiponectin Receptor 1
Cited by: 7
Author(s): Mark E Pepin, Christoph Koentges, Katharina Pfeil, Johannes Gollmer, Sophia Kersting, Sebastian Wiese, Michael M. Hoffmann, Katja E. Odening, Constantin von zur Mühlen, Philipp Diehl, Peter Stachon, Dennis Wolf, Adam R. Wende, Christoph Bode, Andreas Zirlik, Heiko Bugger
Software Mentions: 2
Published: over 6 years ago

10.3390/v9050115

Label-Free Quantitative Proteomic Analysis of Chitosan Oligosaccharide-Treated Rice Infected with Southern Rice Black-Streaked Dwarf Virus
Cited by: 70
Author(s): Anne Yuqing Yang, Lu Yu, Zhuo Chen, Shanxue Zhang, Jing Shi, Xiaozhen Zhao, Yuanyou Yang, Deyu Hu, Baoan Song
Software Mentions: 2
Published: about 9 years ago

10.3389/fcimb.2018.00145

The Loss of Expression of a Single Type 3 Effector (CT622) Strongly Reduces Chlamydia trachomatis Infectivity and Growth
Cited by: 14
Author(s): Mathilde M. Cossé, Michael L. Barta, Derek J. Fisher, Lena K. Oesterlin, Béatrice Niragire, Stéphanie Perrinet, Gaël A. Millot, P. Scott Hefty, Agathe Subtil
Software Mentions: 2
Published: about 8 years ago

10.3389/fendo.2019.00674

Glucocorticoid Treatment Leads to Aberrant Ion and Macromolecular Transport in Regenerating Zebrafish Fins
Cited by: 18
Author(s): Johannes R. Schmidt, Karina Geurtzen, Martin von Bergen, Kristin Schubert, Franziska Knopf
Software Mentions: 2
Published: over 6 years ago

10.3389/fcimb.2017.00521

Immunomodulatory Effects of Amblyomma variegatum Saliva on Bovine Cells: Characterization of Cellular Responses and Identification of Molecular Determinants
Cited by: 12
Author(s): Valérie Rodrigues, Bernard Fernandez, Arthur Vercoutere, Léo Chamayou, Alexandre Andersen, Oana Vigy, Edith Demettre, Martial Séveno, Rosalie Aprelon, Ken Giraud-Girard, Frédéric Stachurski, Étienne Loire, Nathalie Vachiéry, Philippe Holzmüller
Software Mentions: 2
Published: over 8 years ago

10.3389/fcell.2020.544043

Comparative Transcriptional Profiling of Motor Neuron Disorder-Associated Genes in Various Human Cell Culture Models
Cited by: 8
Author(s): Stefan Hauser, Stefanie Schuster, Elena Heuten, Philip Höflinger, Jakob Admard, Yvonne Schelling, Ana Velić, Boris Maček, Stephan Ossowski, Lüdger Schöls
Software Mentions: 2
Published: over 5 years ago

10.3389/fmolb.2021.659058

Phenotypic and Multi-Omics Characterization of Escherichia coli K-12 Adapted to Chlorhexidine Identifies the Role of MlaA and Other Cell Envelope Alterations Regulated by Stress Inducible Pathways in CHX Resistance
Cited by: 7
Author(s): Branden S. J. Gregorchuk, Shelby L Reimer, Kari A. C. Green, Nicola Helen Cartwright, Daniel R. Beniac, Shannon L Hiebert, Timothy F. Booth, Patrick Chong, Garrett Westmacott, George G. Zhanel, Denice C. Bay
Software Mentions: 2
Published: about 5 years ago

10.3389/fnmol.2021.623659

Targeted Quantification of Detergent-Insoluble RNA-Binding Proteins in Human Brain Reveals Stage and Disease Specific Co-aggregation in Alzheimer’s Disease
Cited by: 12
Author(s): Qi Guo, Eric B. Dammer, Maotian Zhou, Sean R. Kundinger, Marla Gearing, James J. Lah, Aĺlan I. Levey, Zhandong Liu, Nicholas T. Seyfried
Software Mentions: 2
Published: about 5 years ago

10.3389/fcimb.2020.00443

Investigating Non-sterilizing Cure in TB Patients at the End of Successful Anti-TB Therapy
Cited by: 20
Author(s): Caroline G. G. Beltran, Tiaan Heunis, James Gallant, Rouxjeane Venter, Nelita du Plessis, André G. Loxton, Matthias Trost, Jill Winter, Stephanus T. Malherbe, Bavesh D Kana, Gerhard Walzl
Software Mentions: 2
Published: almost 6 years ago

10.3390/plants9101370

Comparative Physiological and Proteomic Analysis Reveals Different Involvement of Proteins during Artificial Aging of Siberian Wildrye Seeds
Cited by: 5
Author(s): Lei Xiong, Wenhui Liu, Junlong Zhao, Minghong You, Chaohui Xiong, Yi Xiong, Yanli Xiong, Qingqing Yu, Shiqie Bai, Xiao Ma
Software Mentions: 2
Published: over 5 years ago

10.3390/foods9091147

An Artificial Intelligence Characterised Functional Ingredient, Derived from Rice, Inhibits TNF-α and Significantly Improves Physical Strength in an Inflammaging Population
Cited by: 13
Author(s): Kathy Kennedy, Brian Keogh, Cyril Lopez, Alessandro Adelfio, Brendan Molloy, Alish Kerr, Audrey Wall, Gaël Jalowicki, Thérèse A. Holton, Nora Khaldi
Software Mentions: 2
Published: almost 6 years ago

10.3389/fbioe.2018.00019

Phosphoproteome of the Oleaginous Green Alga, Chlorella vulgaris UTEX 395, under Nitrogen-Replete and -Deplete Conditions
Cited by: 1
Author(s): Michael T. Guarnieri, Alida T. Gerritsen, Calvin A. Henard, Eric P. Knoshaug
Software Mentions: 2
Published: over 8 years ago

10.3390/vaccines9010008

N-terminal VP1 Truncations Favor T = 1 Norovirus-Like Particles
Cited by: 10
Author(s): Ronja Pogan, Victor U. Weiss, Kevin M. Bond, Jasmin Dülfer, Christoph Krisp, Nicholas A. Lyktey, Jürgen Müller-Guhl, Samuele Zoratto, Günter Allmaier, Martin F. Jarrold, César Muñoz‐Fontela, Hartmut Schlüter, Charlotte Uetrecht
Software Mentions: 2
Published: over 5 years ago

10.1186/s40168-017-0375-2

MetaLab: an automated pipeline for metaproteomic data analysis
Cited by: 101
Author(s): Kai Cheng, Zhibin Ning, Xu Zhang, Leyuan Li, Bo Liao, Janice Mayne, Alain Stintzi, Daniel Figeys
Software Mentions: 2
Published: over 8 years ago

10.3389/fpls.2020.00872

Seed Metabolism and Pathogen Resistance Enhancement in Pisum sativum During Colonization of Arbuscular Mycorrhizal Fungi: An Integrative Metabolomics-Proteomics Approach
Cited by: 9
Author(s): Nima Ranjbar Sistani, Getinet Desalegn, Hans‐Peter Kaul, Stefanie Wienkoop
Software Mentions: 2
Published: about 6 years ago

10.1096/fj.202002484R

Sperm proteins and cancer‐testis antigens are released by the seminiferous tubules in mice and men
Cited by: 14
Author(s): Liza O’Donnell, Diane Rebourcet, Laura F. Dagley, Raouda Sgaier, Giuseppe Infusini, Peter J. O’Shaughnessy, Frédéric Chalmel, Daniela Fietz, W. Weidner, Julien M. D. Legrand, Robin M. Hobbs, Robert I McLachlan, Andrew I. Webb, Adrian Pilatz, Thorsten Diemer, Lee B. Smith, Peter G. Stanton
Software Mentions: 2
Published: over 5 years ago

10.1186/s40168-020-00967-x

A semi-tryptic peptide centric metaproteomic mining approach and its potential utility in capturing signatures of gut microbial proteolysis
Cited by: 6
Author(s): Zhixiang Yan, Feixiang He, Fei Xiao, Huanhuan He, Dan Li, Cong Li, Lin Lü, Huijin Zhu, Yanyan Wu, Ru Yan, Xiaofeng Li, Hong Shan
Software Mentions: 2
Published: over 5 years ago

10.3389/fpls.2015.00739

Global analysis of lysine acetylation in strawberry leaves
Cited by: 60
Author(s): Xianping Fang, Wenyue Chen, Yun Zhao, Songlin Ruan, Heng-Mu Zhang, Chengqi Yan, Liang Jin, Lingling Cao, Jun Zhu, Huiqin Ma, Zhongyi Cheng
Software Mentions: 2
Published: almost 11 years ago

10.1371/journal.pbio.2004194

Quantitative proteomic characterization and comparison of T helper 17 and induced regulatory T cells
Cited by: 17
Author(s): Imran Mohammad, Kari Nousiainen, Santosh D. Bhosale, Inna Starskaia, Robert Moulder, Anne Rokka, Fang Cheng, Ponnuswamy Mohanasundaram, John E. Eriksson, David R. Goodlett, Harri Lähdesmäki, Zhi Chen
Software Mentions: 2
Published: about 8 years ago

10.15252/msb.20167357

Proteomics reveals the effects of sustained weight loss on the human plasma proteome
Cited by: 171
Author(s): Philipp Geyer, Nicolai J. Wewer Albrechtsen, Stefka Tyanova, Niklas Graßl, Eva W. Iepsen, Julie Lundgren, Sten Madsbad, Jens J. Holst, Signe S. Torekov, Matthias Mann
Software Mentions: 2
Published: over 9 years ago

10.1155/2013/275390

The Application of SILAC Mouse in Human Body Fluid Proteomics Analysis Reveals Protein Patterns Associated with IgA Nephropathy
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Author(s): Shilin Zhao, Rongxia Li, Xiaoyan Cai, Wan-Jia Chen, Qingrun Li, Tao Xing, Zhu Wang, Y. Eugene Chen, Rong Zeng, Deng Yueyi
Software Mentions: 2
Published: over 13 years ago

10.3390/foods9091150

Living the Sweet Life: How Liquorilactobacillus hordei TMW 1.1822 Changes Its Behavior in the Presence of Sucrose in Comparison to Glucose
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Author(s): Julia Bechtner, Christina Ludwig, Michael Kiening, Frank Jakob, Rudi F. Vogel
Software Mentions: 2
Published: almost 6 years ago

10.1038/s41426-018-0210-2

Associating H2O2-and NO-related changes in the proteome of Mycobacterium smegmatis with enhanced survival in macrophage
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Author(s): Naadir Ganief, Jessica Sjouerman, Claudia Albeldas, Kehilwe C. Nakedi, Clemens Hermann, Bridget Calder, Jonathan M. Blackburn, Nelson C. Soares
Software Mentions: 2
Published: over 7 years ago

10.1111/acel.12604

Biochemical isolation of myonuclei employed to define changes to the myonuclear proteome that occur with aging
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Author(s): Alecia Cutler, Eric B. Dammer, Duc M. Doung, Nicholas T. Seyfried, Anita H. Corbett, Grace K. Pavlath
Software Mentions: 2
Published: about 9 years ago

10.15252/embr.202052289

Role of FAM134 paralogues in endoplasmic reticulum remodeling, ER‐phagy, and Collagen quality control
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Author(s): Alessio Reggio, Viviana Buonomo, Rayene Berkane, Ramachandra M Bhaskara, Mariana Edith Tellechea, Ilaria Peluso, Elena Polishchuk, Giorgia Di Lorenzo, Carmine Cirillo, Marianna Esposito, Adeela Hussain, Antje K. Huebner, Christian A. Hübner, Carmine Settembre, Gerhard Hummer, Paolo Grumati, Alexandra Stolz
Software Mentions: 2
Published: almost 5 years ago

10.1186/s13072-021-00382-y

Rbm10 facilitates heterochromatin assembly via the Clr6 HDAC complex
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Author(s): Martina Weigt, Qingsong Gao, Hyoju Ban, Haijin He, Guido Mastrobuoni, Stefan Kempa, Wei Chen, Fēi Li
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pgen.1009583

RIOK2 phosphorylation by RSK promotes synthesis of the human small ribosomal subunit
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Author(s): Emilie L. Cerezo, Thibault Houlès, Oriane Lié, Marie-Kerguelen Sarthou, Charlotte Audoynaud, Geneviève Lavoie, Maral Halladjian, Sylvain Cantaloube, Carine Froment, Odile Burlet‐Schiltz, Y. Henry, Philippe P. Roux, Anthony K. Henras, Yves Roméo
Software Mentions: 2
Published: about 5 years ago

10.1002/msb.134766

Acetylation dynamics and stoichiometry in <scp>S</scp> accharomyces cerevisiae 
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Author(s): Brian T. Weinert, Vytautas Iešmantavičius, Tarek Moustafa, Christian Schölz, Sebastian Wagner, Christoph Magnes, Rudolf Zechner, Chunaram Choudhary
Software Mentions: 2
Published: over 12 years ago

10.1186/s12934-019-1071-7

Comparative proteome analysis in an Escherichia coli CyDisCo strain identifies stress responses related to protein production, oxidative stress and accumulation of misfolded protein
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Author(s): Isabel Guerrero Montero, Katarzyna Magdalena Dolata, Rabea Schlüter, Gilles Malherbe, Susanne Sievers, Daniela Zühlke, Thomas Sura, Emma Davé, Katharina Riedel, Colin Robinson
Software Mentions: 2
Published: over 7 years ago

10.15252/msb.20209443

Proteomic patterns associated with response to breast cancer neoadjuvant treatment
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Author(s): Anjana Shenoy, Nishanth Belugali Nataraj, Gili Perry, Fabricio Loayza‐Puch, Remco Nagel, I Marin, Nora Balint, Noa Bossel, A J Pavlovsky, Iris Barshack, Bella Kaufman, Reuven Agami, Maya Dadiani, Tamar Geiger
Software Mentions: 2
Published: almost 6 years ago

10.1186/s13072-019-0265-x

Citrullination of HP1γ chromodomain affects association with chromatin
Cited by: 17
Author(s): Meike Wiese, Andrew J. Bannister, Srinjan Basu, Wayne Boucher, Kai J. Wohlfahrt, Maria A. Christophorou, Michael L. Nielsen, David Klenerman, Ernest D. Laue, Tony Kouzarides
Software Mentions: 2
Published: about 7 years ago

10.3389/fmed.2017.00159

Proteomics of Eosinophil Activation
Cited by: 6
Author(s): Deane F. Mosher, Emily M. Wilkerson, Keren B. Turton, Alexander S. Hebert, Joshua J. Coon
Software Mentions: 2
Published: over 8 years ago

10.15252/emmm.201910880

Phosphorylation of TFCP2L1 by CDK1 is required for stem cell pluripotency and bladder carcinogenesis
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Author(s): Jinbeom Heo, Byeong‐Joo Noh, Seungun Lee, Hye‐Yeon Lee, YongHwan Kim, Jisun Lim, Hyein Ju, Hwan Yeul Yu, Chae‐Min Ryu, Peter Cw Lee, Hee Jong Jeong, Yumi Oh, Kyunggon Kim, Sangjin Kim, Jaekyoung Son, Bumsik Hong, Jong Soo Kim, Yong Mee Cho, Dong‐Myung Shin
Software Mentions: 2
Published: over 6 years ago

10.15252/embj.2020107182

Reciprocal priming between receptor tyrosine kinases at recycling endosomes orchestrates cellular signalling outputs
Cited by: 9
Author(s): Michael P. Smith, Harriet R. Ferguson, Jennifer Ferguson, Egor Zindy, Katarzyna M. Kowalczyk, Thomas Kedward, Christian Bates, Joseph Parsons, Joanne Watson, Sarah Chandler, Paul Fullwood, Stacey Warwood, David Knight, Robert B. Clarke, Chiara Francavilla
Software Mentions: 2
Published: about 5 years ago

10.1186/s12916-019-1478-3

Profiling of the muscle-specific dystroglycan interactome reveals the role of Hippo signaling in muscular dystrophy and age-dependent muscle atrophy
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Author(s): Andriy S. Yatsenko, Mariya M. Kucherenko, Yuanbin Xie, Dina Aweida, Henning Urlaub, Renate Scheibe, Shenhav Cohen, Halyna R. Shcherbata
Software Mentions: 2
Published: over 6 years ago

10.15252/embj.2020104419

Cyclin A triggers Mitosis either via the Greatwall kinase pathway or Cyclin B
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Author(s): Nadia Hégarat, Adrijana Crncec, Maria F. Suarez Peredo Rodriguez, Fabio Echegaray Iturra, Yan Gu, Oliver Busby, Paul Lang, Alexis R. Barr, Chris Bakal, Masato T. Kanemaki, Angus I. Lamond, Béla Novák, Tony Ly, Helfrid Hochegger
Software Mentions: 2
Published: about 6 years ago

10.15252/embj.2019102731

CLUH granules coordinate translation of mitochondrial proteins with mTORC1 signaling and mitophagy
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Author(s): David Pla‐Martín, Désirée Schatton, Janica L. Wiederstein, Marie‐Charlotte Marx, Salim Khiati, Marcus Krüger, Elena I. Rugarli
Software Mentions: 2
Published: over 6 years ago

10.15252/msb.20156423

Differential dynamics of the mammalian <scp>mRNA</scp> and protein expression response to misfolding stress
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Author(s): Zhe Cheng, Guoshou Teo, Sabrina Krueger, Tara M. Rock, Hiromi W. L. Koh, Hyungwon Choi, Christine Vogel
Software Mentions: 2
Published: over 10 years ago

10.1186/s12916-021-02071-9

Absolute quantitative proteomics using the total protein approach to identify novel clinical immunohistochemical markers in renal neoplasms
Cited by: 3
Author(s): Susana Jorge, José Luís Capelo, William A. LaFramboise, Swati Satturwar, Dimitrios Korentzelos, Sheldon Bastacky, Gabriela Quiroga‐Garza, Rajiv Dhir, Jacek R. Wiśniewski, Carlos Lodeiro, Hugo M. Santos
Software Mentions: 2
Published: almost 5 years ago

10.15252/msb.202010125

Identification of covalent modifications regulating immune signaling complex composition and phenotype
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Author(s): Annika Frauenstein, Stefan Ebner, Fynn M. Hansen, Ankit Sinha, Kshiti Phulphagar, Kirby N. Swatek, Daniel Hornburg, Matthias Mann, Felix Meissner
Software Mentions: 2
Published: almost 5 years ago

10.15252/msb.20177663

A proteomic atlas of insulin signalling reveals tissue‐specific mechanisms of longevity assurance
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Author(s): Luke S Tain, Robert Sehlke, Chirag Jain, Manopriya Chokkalingam, Nagarjuna Nagaraj, Paul Essers, Mark Rassner, Sebastian Grönke, Jenny Froelich, Christoph Dieterich, Matthias Mann, Nazif Alic, Andreas Beyer, Linda Partridge
Software Mentions: 2
Published: almost 9 years ago

10.3390/metabo11070459

Lipoprotein Proteomics and Aortic Valve Transcriptomics Identify Biological Pathways Linking Lipoprotein(a) Levels to Aortic Stenosis
Cited by: 13
Author(s): Raphaëlle Bourgeois, Jérôme Bourgault, Audrey-Anne Després, Nicolas Perrot, Jakie Guertin, Arnaud Girard, Patricia L. Mitchell, Clarisse Gotti, Sylvie Bourassa, Corey A. Scipione, Nathalie Gaudreault, Michael B. Boffa, Marlys L. Koschinsky, Philippe Pîbarot, Arnaud Droit, Sébastien Thériault, Patrick Mathieu, Yohan Bossé, Benoît J. Arsenault
Software Mentions: 2
Published: almost 5 years ago

10.1242/dmm.045096

CHIP mutations affect the heat shock response differently in human fibroblasts and iPSC-derived neurons
Cited by: 5
Author(s): Stefanie Schuster, Elena Heuten, Ana Velić, Jakob Admard, Matthis Synofzik, Stephan Ossowski, Boris Maček, Stefan Hauser, Lüdger Schöls
Software Mentions: 2
Published: over 5 years ago

10.1002/1878-0261.12463

Perineural invasion in pancreatic cancer: proteomic analysis and in vitro modelling
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Author(s): Wasfi Alrawashdeh, Richard C. Jones, Laurent Dumartin, Tomasz P. Radon, Pedro R. Cutillas, Roger Feakins, Branko Dmitrović, İhsan Ekin Demir, Güralp O. Ceyhan, Tatjana Crnogorac‐Jurčević
Software Mentions: 2
Published: over 7 years ago

10.1111/acel.12780

Oxidation resistance 1 is a novel senolytic target
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Author(s): Xin Zhang, Suping Zhang, Xingui Liu, Yingying Wang, Jianhui Chang, Xuan Zhang, Samuel G. Mackintosh, Alan J. Tackett, Yonghan He, Dongwen Lv, Rémi-Martin Laberge, Judith Campisi, Jianrong Wang, Guangrong Zheng, Daohong Zhou
Software Mentions: 2
Published: about 8 years ago

10.1016/j.gpb.2020.06.012

Screening of Potential Biomarkers for Gastric Cancer with Diagnostic Value Using Label-free Global Proteome Analysis
Cited by: 12
Author(s): Yongxi Song, Jun Wang, Jingwei Sun, Xiaowan Chen, Jinxin Shi, Zhonghua Wu, Dehao Yu, Fei Zhang, Zhenning Wang
Software Mentions: 2
Published: over 5 years ago

10.1002/glia.24032

Regulation of aquaporin‐4 expression in the central nervous system investigated using M23‐AQP4 null mouse
Cited by: 10
Author(s): Francesco Pisani, Laura Simone, Maria Grazia Mola, Manuela De Bellis, Antonio Frigeri, Grazia Paola Nicchia, María Svelto
Software Mentions: 2
Published: about 5 years ago

10.1016/j.devcel.2019.04.003

Reductional Meiosis I Chromosome Segregation Is Established by Coordination of Key Meiotic Kinases
Cited by: 27
Author(s): Stefan Galander, Rachael Barton, Weronika E. Borek, Christos Spanos, David A. Kelly, Daniel Robertson, Juri Rappsilber, Adèle L. Marston
Software Mentions: 2
Published: about 7 years ago

10.1242/dmm.033092

Fetal articular cartilage regeneration versus adult fibrocartilaginous repair: secretome proteomics unravels molecular mechanisms in an ovine model
Cited by: 16
Author(s): Iris Ribitsch, Rupert L. Mayer, Monika Egerbacher, Simone Gabner, Maciej M. Kańduła, Julie Rosser, Eva Haltmayer, Ulrike Auer, Sinan Gültekin, Johann Huber, Andrea Bileck, David P. Kreil, Christopher Gerner, Florien Jenner
Software Mentions: 2
Published: almost 8 years ago

10.1172/jci.insight.143474

Identification of Wee1 as a target in combination with avapritinib for gastrointestinal stromal tumor treatment
Cited by: 5
Author(s): Shuai Ye, Dinara Sharipova, Marya Kozinova, Lilli Klug, Jimson D’Souza, Martin G. Belinsky, Katherine J. Johnson, Margret B. Einarson, Karthik Devarajan, Yan Zhou, Samuel Litwin, Michael C. Heinrich, Ronald P. DeMatteo, Margaret von Mehren, James S. Duncan, Lori Rink
Software Mentions: 2
Published: over 5 years ago

10.1074/jbc.M115.645283

Organization of Subunits in the Membrane Domain of the Bovine F-ATPase Revealed by Covalent Cross-linking
Cited by: 38
Author(s): Jennifer Lee, Shuzhe Ding, Thomas B Walpole, Andrew N Holding, M.G. Montgomery, Ian M. Fearnley, John E. Walker
Software Mentions: 2
Published: about 11 years ago

10.3390/md18120599

Biofunctionality of Enzymatically Derived Peptides from Codfish (Gadus morhua) Frame: Bulk In Vitro Properties, Quantitative Proteomics, and Bioinformatic Prediction
Cited by: 10
Author(s): Ali Jafarpour, Simon Gregersen, Rocio Marciel Gomes, Paolo Marcatili, Tobias Hegelund Olsen, Charlotte Jacobsen, Michael Toft Overgaard, Ann‐Dorit Moltke Sørensen
Software Mentions: 2
Published: over 5 years ago

10.1186/s12864-019-6151-x

Proteomic analysis showing the signaling pathways involved in the rhizome enlargement process in Nelumbo nucifera
Cited by: 16
Author(s): Dingding Cao, Rebecca Njeri Damaris, Yue Zhang, Meihui Liu, Ming Li, Pingfang Yang
Software Mentions: 2
Published: over 6 years ago

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