cran: Andromeda | Projects | Ecosyste.ms: Papers

10.1080/20013078.2019.1635420

Mitochondrial protein enriched extracellular vesicles discovered in human melanoma tissues can be detected in patient plasma
Cited by: 94
Author(s): Su Chul Jang, Rossella Crescitelli, Aleksander Cvjetkovic, Valerio Belgrano, Roger Olofsson Bagge, Karin Sundfeldt, Takahiro Ochiya, Raghu Kalluri, Jan Lötvall
Software Mentions: 1
Published: almost 7 years ago

10.1002/jev2.12109

Apoptotic vesicles restore liver macrophage homeostasis to counteract type 2 diabetes
Cited by: 70
Author(s): Chenxi Zheng, Bing‐Dong Sui, Xiao Zhang, Jiachen Hu, Ji Chen, Liu Jin, Di Wu, Qingyuan Ye, Lei Xiang, Xinyu Qiu, Siying Liu, Zhihong Deng, Jun Zhou, Shiyu Liu, Songtao Shi, Yan Jin
Software Mentions: 1
Published: over 5 years ago

10.1002/jev2.12129

Cryptococcus extracellular vesicles properties and their use as vaccine platforms
Cited by: 39
Author(s): Juliana Rizzo, Sarah Sze Wah Wong, Anastasia D. Gazi, Frédérique Moyrand, Thibault Chaze, Pierre‐Henri Commère, Sophie Novault, Mariette Matondo, Gérard Péhau‐Arnaudet, Flavia C G Reis, Matthijn Vos, Lysangela Ronalte Alves, Robin C. May, Leonardo Nimrichter, Márcio L. Rodrigues, Vishukumar Aimanianda, Guilhem Janbon
Software Mentions: 1
Published: about 5 years ago

10.1016/j.jprot.2020.103925

Plasmodium berghei LAPs form an extended protein complex that facilitates crystalloid targeting and biogenesis
Cited by: 8
Author(s): Annie Z. Tremp, Sadia Saeed, Vikram Sharma, Edwin Lasonder, Johannes T. Dessens
Software Mentions: 1
Published: almost 6 years ago

10.3390/jof5010007

Proteomic Analysis of the Responses of Candida albicans during Infection of Galleria mellonella Larvae
Cited by: 16
Author(s): Gerard Sheehan, Kevin Kavanagh
Software Mentions: 1
Published: over 7 years ago

10.3390/jof6020042

Exposure of Aspergillus fumigatus to Atorvastatin Leads to Altered Membrane Permeability and Induction of an Oxidative Stress Response
Cited by: 6
Author(s): Ahmad Ajdidi, Gerard Sheehan, Kevin Kavanagh
Software Mentions: 1
Published: over 6 years ago

10.3390/nu12041169

Maternal Allergy and the Presence of Nonhuman Proteinaceous Molecules in Human Milk
Cited by: 9
Author(s): Pieter Dekker, Sjef Boeren, Alet H. Wijga, Gerard H. Koppelman, Jacques Vervoort, Kasper Hettinga
Software Mentions: 1
Published: over 6 years ago

10.3390/jof7090748

ITS2 Sequencing and Targeted Meta-Proteomics of Infant Gut Mycobiome Reveal the Functional Role of Rhodotorula sp. during Atopic Dermatitis Manifestation
Cited by: 9
Author(s): Kevin Mok, Narissara Suratanon, Sittiruk Roytrakul, Sawanya Charoenlappanit, Preecha Patumcharoenpol, Pantipa Chatchatee, Wanwipa Vongsangnak, Massalin Nakphaichit
Software Mentions: 1
Published: almost 5 years ago

10.1073/pnas.1910262116

Corazonin signaling integrates energy homeostasis and lunar phase to regulate aspects of growth and sexual maturation in Platynereis
Cited by: 44
Author(s): Gabriele Andreatta, Caroline Broyart, Charline Borghgraef, Karim Vadiwala, V. V. Kozin, Alessandra Polo, Andrea Bileck, Isabel Beets, Liliane Schoofs, Christopher Gerner, Florian Raible
Software Mentions: 1
Published: over 6 years ago

10.1098/rsob.170076

Mitotic post-translational modifications of histones promote chromatin compaction in vitro
Cited by: 51
Author(s): Alisa Zhiteneva, Juán José Bonfiglio, А. А. Макаров, Thomas Colby, Paola Vagnarelli, Eric C. Schirmer, Ivan Matić, William C. Earnshaw
Software Mentions: 1
Published: almost 9 years ago

10.1098/rsob.200405

A TOR (target of rapamycin) and nutritional phosphoproteome of fission yeast reveals novel targets in networks conserved in humans
Cited by: 3
Author(s): Lenka Hálová, David Cobley, Mirita Franz‐Wachtel, Tingting Wang, Kaitlin R. Morrison, Karsten Krug, Nicolas C. Nalpas, Boris Maček, Iain Hagan, Sean J. Humphrey, Janni Petersen
Software Mentions: 1
Published: over 5 years ago

10.1155/2015/678527

Hypoxia Strongly Affects Mitochondrial Ribosomal Proteins and Translocases, as Shown by Quantitative Proteomics of HeLa Cells
Cited by: 22
Author(s): Paula A. Bousquet, Joe Alexander Sandvik, Magnus Ø. Arntzen, Nina Frederike Jeppesen Edin, Stine Christoffersen, Ute Krengel, Erik O. Pettersen, Bernd Thiede
Software Mentions: 1
Published: almost 11 years ago

10.1155/2015/841769

SILAC-Based Quantitative Proteomic Analysis of Diffuse Large B-Cell Lymphoma Patients
Cited by: 12
Author(s): Ulla Rüetschi, Martin Stenson, Sverker Hasselblom, Herman Nilsson‐Ehle, Ulrika Hansson, Henrik Fagman, Per‐Ola Andersson
Software Mentions: 1
Published: over 11 years ago

10.1167/iovs.17-22927

Generation and Proteome Profiling of PBMC-Originated, iPSC-Derived Corneal Endothelial Cells
Cited by: 23
Author(s): Muhammad Ali, Shahid Y. Khan, Shivakumar Vasanth, Mariya R Ahmed, Ruiqiang Chen, Chan Hyun Na, Jason J. Thomson, Caihong Qiu, John D. Gottsch, Saima Riazuddin
Software Mentions: 1
Published: over 8 years ago

10.1002/pmic.201600213

Proteomic characterization of microdissected breast tissue environment provides a protein-level overview of malignant transformation
Cited by: 4
Author(s): René B. H. Braakman, Christoph Stingl, Madeleine M.A. Tilanus-Linthorst, Carolien H.M. van Deurzen, Mieke Timmermans, Marcel Smid, John A. Foekens, Theo M. Luider, John W.M. Martens, Arzu Umar
Software Mentions: 1
Published: over 9 years ago

10.1016/j.yjsbx.2018.100002

3D mapping of native extracellular matrix reveals cellular responses to the microenvironment
Cited by: 13
Author(s): Zipora Lansky, Yael Mutsafi, Lothar Houben, Tal Ilani, Gad Armony, Sharon G. Wolf, Deborah Fass
Software Mentions: 1
Published: over 7 years ago

10.1038/s41388-019-0971-7

Microparticles from tumors exposed to radiation promote immune evasion in part by PD-L1
Cited by: 29
Author(s): Michael Timaner, Ruslana Kotsofruk, Ziv Raviv, Ksenia Magidey, Dvir Shechter, Tal Kan, A. Nevelsky, Shahar Daniel, Elisabeth G.E. de Vries, Tongwu Zhang, Orit Kaidar–Person, Robert S. Kerbel, Yuval Shaked
Software Mentions: 1
Published: almost 7 years ago

10.1093/jisesa/ieab057

Identification of N-linked Glycoproteins in Silkworm Serum Using Con A Lectin Affinity Chromatography and Mass Spectrometry
Cited by: 0
Author(s): Zhaoming Dong, Lin Ye, Yan Zhang, Zhiyong Chen, Benchi Li, Tao Zhang, Ping Zhao
Software Mentions: 1
Published: about 5 years ago

10.1038/s41389-021-00334-x

MMP8 increases tongue carcinoma cell–cell adhesion and diminishes migration via cleavage of anti-adhesive FXYD5
Cited by: 9
Author(s): Krista Juurikka, Antoine Dufour, Kari P. Pehkonen, Barbara Mainoli, Priscila Campioni Rodrigues, Nestor Solis, Théo Klein, Pia Nyberg, Christopher M. Overall, Tuula Salo, Pirjo Åström
Software Mentions: 1
Published: about 5 years ago

10.1194/jlr.RA120001126

Perilipin 5 S155 phosphorylation by PKA is required for the control of hepatic lipid metabolism and glycemic control
Cited by: 18
Author(s): Stacey N Keenan, William De Nardo, Jieqiong Lou, Ralf B. Schittenhelm, Magdalene K Montgomery, James G. Granneman, Elizabeth Hinde, Matthew J. Watt
Software Mentions: 1
Published: over 5 years ago

10.1007/s10856-012-4760-x

Quantitative proteomics reveals altered expression of extracellular matrix related proteins of human primary dermal fibroblasts in response to sulfated hyaluronan and collagen applied as artificial extracellular matrix
Cited by: 13
Author(s): Stephan Müller, Anja van der Smissen, Margarete von Feilitzsch, Ulf Anderegg, Stefan Kalkhof, Martin von Bergen
Software Mentions: 1
Published: almost 14 years ago

10.1002/term.3081

Proteomic profiling of striatal tissue of a rat model of Parkinson's disease after implantation of collagen‐encapsulated human umbilical cord mesenchymal stem cells
Cited by: 2
Author(s): Anna Santaella, Hans Wessels, Purva Kulkarni, Jolein Gloerich, H. Bea Kuiperij, Bastiaan R. Bloem, Alain J. van Gool, Sílvia Cabré, Verónica Alamilla, Marcel M. Verbeek
Software Mentions: 1
Published: about 6 years ago

10.3390/nu12020425

Whey Peptides Stimulate Differentiation and Lipid Metabolism in Adipocytes and Ameliorate Lipotoxicity-Induced Insulin Resistance in Muscle Cells
Cited by: 20
Author(s): Kenneth D’Souza, Angella Mercer, Hannah Mawhinney, Thomas Pulinilkunnil, Chibuike C. Udenigwe, Petra C. Kienesberger
Software Mentions: 1
Published: over 6 years ago

10.1002/pmic.201500400

Group 1 metabotropic glutamate receptors 1 and 5 form a protein complex in mouse hippocampus and cortex
Cited by: 50
Author(s): Nikhil J. Pandya, Remco V. Klaassen, Roel C. van der Schors, Johan A. Slotman, Adriaan B. Houtsmuller, August B. Smit, Ka Wan Li
Software Mentions: 1
Published: almost 10 years ago

10.7554/eLife.61509

Molecular basis for substrate specificity of the Phactr1/PP1 phosphatase holoenzyme
Cited by: 17
Author(s): Roman O Fedoryshchak, Magdalena Přechová, Abbey M Butler, Rebecca Lee, Nicola O’Reilly, Helen Flynn, Ambrosius P Snijders, Noreen Eder, Sila K Ultanir, S. Mouilleron, Richard Treisman
Software Mentions: 1
Published: almost 6 years ago

10.7554/eLife.65712

Sushi domain-containing protein 4 controls synaptic plasticity and motor learning
Cited by: 10
Author(s): Inés González-Calvo, Keerthana Iyer, Mélanie Carquin, Anouar Khayachi, Fernando Giuliani, Séverine M. Sigoillot, J.D. Vincent, Martial Séveno, Maxime Veleanu, Sylvana Tahraoui, Mélanie Albert, Oana Vigy, Célia Bosso-Lefèvre, Yann Nadjar, Andréa Dumoulin, Antoine Triller, Jean-Louis Bessereau, Laure Rondi-Reig, Philippe Isope, Fekrije Selimi
Software Mentions: 1
Published: over 5 years ago

10.3390/proteomes9030037

Insulin and 5-Aminoimidazole-4-Carboxamide Ribonucleotide (AICAR) Differentially Regulate the Skeletal Muscle Cell Secretome
Cited by: 4
Author(s): Alba González-Franquesa, Lone Peijs, Daniel T. Cervone, Ceren Koçana, Juleen R. Zierath, Atul S. Deshmukh
Software Mentions: 1
Published: about 5 years ago

10.7554/eLife.01990

Host-induced bacterial cell wall decomposition mediates pattern-triggered immunity in Arabidopsis
Cited by: 57
Author(s): Xiaokun Liu, Heini M Grabherr, Roland Willmann, Dagmar Kolb, Frédéric Brunner, Ute Bertsche, Daniel Kühner, Mirita Franz‐Wachtel, Bushra Amin, Georg Felix, Marc Ongena, Thorsten Nürnberger, Andrea A. Gust
Software Mentions: 1
Published: about 12 years ago

10.7554/eLife.46380

Endothelial PKA activity regulates angiogenesis by limiting autophagy through phosphorylation of ATG16L1
Cited by: 26
Author(s): Xuyao Zhao, Pavel I. Nedvetsky, Fabio Stanchi, Anne-Clémence Vion, Oliver Popp, Kerstin Zühlke, Gunnar Dittmar, Enno Klussmann, Holger Gerhardt
Software Mentions: 1
Published: almost 7 years ago

10.7554/eLife.44210

Antigen receptor control of methionine metabolism in T cells
Cited by: 123
Author(s): Linda V. Sinclair, Andrew J. M. Howden, Alejandro Brenes, Laura Spinelli, Jens Hukelmann, Andrew N. Macintyre, Xiaojing Liu, Sarah Thomson, Peter M. Taylor, Jeffrey C. Rathmell, Jason W. Locasale, Angus I. Lamond, Doreen A. Cantrell
Software Mentions: 1
Published: over 7 years ago

10.7554/eLife.33465

Exportin Crm1 is repurposed as a docking protein to generate microtubule organizing centers at the nuclear pore
Cited by: 13
Author(s): Xun X. Bao, Christos Spanos, Tomoko Kojidani, E.M. Lynch, Juri Rappsilber, Yasushi Hiraoka, Tokuko Haraguchi, Kenneth E. Sawin
Software Mentions: 1
Published: about 8 years ago

10.7554/eLife.35012

FRMD8 promotes inflammatory and growth factor signalling by stabilising the iRhom/ADAM17 sheddase complex
Cited by: 47
Author(s): Ulrike Künzel, Adam G. Grieve, Yao Meng, Boris Sieber, Sally A. Cowley, Matthew Freeman
Software Mentions: 1
Published: about 8 years ago

10.7554/eLife.21007

Molecular basis of outer kinetochore assembly on CENP-T
Cited by: 104
Author(s): Pim J Huis in 't Veld, Sadasivam Jeganathan, Arsen Petrovic, Priyanka Singh, Juliane John, Veronica Krenn, Florian Weissmann, Tanja Bange, Andrea Musacchio
Software Mentions: 1
Published: over 9 years ago

10.3390/proteomes9020019

Combining Mass Spectrometry-Based Phosphoproteomics with a Network-Based Approach to Reveal FLT3-Dependent Mechanisms of Chemoresistance
Cited by: 4
Author(s): Giusj Monia Pugliese, Sara Latini, Giorgia Massacci, Livia Perfetto, Francesca Sacco
Software Mentions: 1
Published: over 5 years ago

10.7554/eLife.12748

Systematic substrate identification indicates a central role for the metalloprotease ADAM10 in axon targeting and synapse function
Cited by: 125
Author(s): Peer‐Hendrik Kuhn, Alessio Colombo, Benjamin Schusser, Daniela Dreymueller, Sebastian Wetzel, Ute Schepers, Julia Herber, Andreas Ludwig, Elisabeth Kremmer, Dirk Montag, Ulrike Müller, Michaela Schweizer, Paul Säftig, Stefan Bräse, Stefan F. Lichtenthaler
Software Mentions: 1
Published: over 10 years ago

10.7554/eLife.57495

Differential accumulation of storage bodies with aging defines discrete subsets of microglia in the healthy brain
Cited by: 39
Author(s): Jeremy C. Burns, Bunny Cotleur, Dirk Walther, Bekim Bajrami, Stephen Rubino, Ru Wei, Nathalie Franchimont, Susan L. Cotman, Richard M. Ransohoff, Michaël Mingueneau
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.ppat.1008855

SAMHD1 phosphorylation and cytoplasmic relocalization after human cytomegalovirus infection limits its antiviral activity
Cited by: 12
Author(s): Simone De Meo, Valentina Dell’Oste, Rosa Molfetta, Valentina Tassinari, Lavinia Vittoria Lotti, Simone Vespa, Benedetta Pignoloni, Daniela Angela Covino, Laura Fantuzzi, Roberta Bona, Alessandra Zingoni, Ilaria Nardone, Matteo Biolatti, Alessandra Coscia, Rossella Paolini, Monsef Benkirane, Fredrik Edfors, Tatyana Sandalova, Adnane Achour, John Hiscott, Santo Landolfo, Angela Santoni, Cristina Cerboni
Software Mentions: 1
Published: almost 6 years ago

10.7554/eLife.32111

Mitochondrial CoQ deficiency is a common driver of mitochondrial oxidants and insulin resistance
Cited by: 84
Author(s): Daniel J. Fazakerley, Rima Chaudhuri, Pengyi Yang, Ghassan J. Maghzal, Kristen C. Thomas, James R. Krycer, Sean J. Humphrey, Benjamin L. Parker, Kelsey H. Fisher‐Wellman, Christopher C. Meoli, Nolan J. Hoffman, Ciana Diskin, James G. Burchfield, Mark J. Cowley, Warren Kaplan, Zora Modrušan, Ganesh Kolumam, Pengyi Yang, Daniel L. Chen, Dorit Samocha-Bonet, Jerry R. Greenfield, Kyle L. Hoehn, Roland Stocker, David E. James
Software Mentions: 1
Published: over 8 years ago

10.7554/eLife.00785

MAVS recruits multiple ubiquitin E3 ligases to activate antiviral signaling cascades
Cited by: 270
Author(s): Siqi Liu, Jueqi Chen, Xin Cai, Jiaxi Wu, Xiang Chen, You Wu, Lijun Sun, Zhijian J. Chen
Software Mentions: 1
Published: about 13 years ago

10.3390/proteomes8030016

High-Throughput Identification of the Rhodnius prolixus Midgut Proteome Unravels a Sophisticated Hematophagic Machinery
Cited by: 10
Author(s): Radouane Ouali, Karen Caroline Valentim de Brito, Didier Salmon, Sabrina Bousbata
Software Mentions: 1
Published: about 6 years ago

10.7554/eLife.35330

Normal mitochondrial function in Saccharomyces cerevisiae has become dependent on inefficient splicing
Cited by: 18
Author(s): Marina Rudan, Peter Bou Dib, Marina Musa, Matea Kanunnikau, Sandra Sobočanec, David Rueda, Tobias Warnecke, Anita Kriško
Software Mentions: 1
Published: over 8 years ago

10.7554/eLife.27402

Characterisation of the biflavonoid hinokiflavone as a pre-mRNA splicing modulator that inhibits SENP
Cited by: 27
Author(s): Andrea Pawellek, Ursula Ryder, Triin Tammsalu, Lewis J King, Helmi Kreinin, Tony Ly, Ronald T. Hay, Richard C. Hartley, Angus I. Lamond
Software Mentions: 1
Published: almost 9 years ago

10.1590/1678-9199-JVATITD-2020-0053

Oxidative stress and antioxidant defense in detoxification systems of snake venom-induced toxicity
Cited by: 5
Author(s): Degang Dong, Zhongping Deng, Zhangren Yan, Wenli Mao, Jae-Seon Yi, Mei Song, Qiang Li, Jun Chen, Qi Chen, Liang Liu, Xi Wang, Xiuqin Huang, Wanchun Wang
Software Mentions: 1
Published: over 6 years ago

10.3390/proteomes8020006

Vesiculation of Red Blood Cells in the Blood Bank: A Multi-Omics Approach towards Identification of Causes and Consequences
Cited by: 11
Author(s): Joames Kauffimann Freitas Leal, Edwin Lasonder, Vikram Sharma, Jürgen Schiller, Guido Fanelli, Sara Rinalducci, Roland Brock, G.J.C.G.M. Bosman
Software Mentions: 1
Published: over 6 years ago

10.7554/eLife.69310

Aorta smooth muscle-on-a-chip reveals impaired mitochondrial dynamics as a therapeutic target for aortic aneurysm in bicuspid aortic valve disease
Cited by: 20
Author(s): Mieradilijiang Abudupataer, Shichao Zhu, Shiqiang Yan, Kehua Xu, Jingjing Zhang, Sushan Luo, Wenrui Ma, Md. Fazle Alam, Yuyi Tang, Hui Huang, Nan Chen, Li Wang, Guoquan Yan, Jun Li, Hao Lai, Chunsheng Wang, Kai Zhu, Weijia Zhang
Software Mentions: 1
Published: almost 5 years ago

10.3390/proteomes6020019

A Proteomic View of Salmonella Typhimurium in Response to Phosphate Limitation
Cited by: 8
Author(s): Jiezhang Jiang, Kaiwen Yu, Linlu Qi, Yanhua Liu, Sen Cheng, Mei Wu, Zhen Wang, Jiaqi Fu, Xiaoyun Liu
Software Mentions: 1
Published: over 8 years ago

10.7554/eLife.46740

Misfolded GPI-anchored proteins are escorted through the secretory pathway by ER-derived factors
Cited by: 49
Author(s): Eszter Zavodszky, Ramanujan S. Hegde
Software Mentions: 1
Published: over 7 years ago

10.3390/proteomes4010010

Comparing Simplification Strategies for the Skeletal Muscle Proteome
Cited by: 2
Author(s): Bethany Geary, Iain S. Young, Phillip Cash, Phillip D. Whitfield, Mary K. Doherty
Software Mentions: 1
Published: over 10 years ago

10.3390/proteomes4020016

Activity-Based Proteomics Reveals Heterogeneous Kinome and ATP-Binding Proteome Responses to MEK Inhibition in KRAS Mutant Lung Cancer
Cited by: 5
Author(s): Jae-Young Kim, Paul A. Stewart, Adam L. Borne, Bin Fang, Eric A. Welsh, Yian Ann Chen, Steven Eschrich, John M. Koomen, Eric B. Haura
Software Mentions: 1
Published: over 10 years ago

10.1128/JVI.01751-17

Viperin Targets Flavivirus Virulence by Inducing Assembly of Noninfectious Capsid Particles
Cited by: 39
Author(s): Kirstin Vonderstein, Emma Nilsson, Philipp Hubel, Larsard Nygard Skalman, Arunkumar S. Upadhyay, Jenny Pasto, Andreas Pichlmair, Richard Lundmark, Anna K. Överby
Software Mentions: 1
Published: over 8 years ago

10.7554/eLife.11466

A deep proteomics perspective on CRM1-mediated nuclear export and nucleocytoplasmic partitioning
Cited by: 161
Author(s): Koray Kırlı, Samir Karaca, Heinz-Jürgen Dehne, Matthias Samwer, Kuan‐Ting Pan, Christof Lenz, Henning Urlaub, Dirk Görlich
Software Mentions: 1
Published: over 10 years ago

10.7554/eLife.63868

Exocyst-mediated membrane trafficking of the lissencephaly-associated ECM receptor dystroglycan is required for proper brain compartmentalization
Cited by: 6
Author(s): Andriy S. Yatsenko, Mariya M. Kucherenko, Yuanbin Xie, Henning Urlaub, Halyna R. Shcherbata
Software Mentions: 1
Published: over 5 years ago

10.7554/eLife.36530

Efficient analysis of mammalian polysomes in cells and tissues using Ribo Mega-SEC
Cited by: 37
Author(s): Harunori Yoshikawa, Mark Larance, Dylan Harney, Ramasubramanian Sundaramoorthy, Tony Ly, Tom Owen-Hughes, Angus I. Lamond
Software Mentions: 1
Published: about 8 years ago

10.7554/eLife.24994

The genomic landscape of human cellular circadian variation points to a novel role for the signalosome
Cited by: 9
Author(s): Ludmila Gaspar, Cédric Howald, Konstantin Popadin, Bert Maier, Daniel Mauvoisin, Ermanno Moriggi, María Gutiérrez‐Arcelus, Emilie Falconnet, Christelle Borel, Dieter Kunz, Achim Kramer, Frédéric Gachon, Emmanouil T. Dermitzakis, Stylianos E. Antonarakis, Steven A. Brown
Software Mentions: 1
Published: almost 9 years ago

10.1128/JVI.02211-17

N-Terminomics TAILS Identifies Host Cell Substrates of Poliovirus and Coxsackievirus B3 3C Proteinases That Modulate Virus Infection
Cited by: 58
Author(s): Julienne Jagdeo, Antoine Dufour, Théo Klein, Nestor Solis, Oded Kleifeld, Jayachandran N. Kizhakkedathu, Honglin Luo, Christopher M. Overall, Eric Jan
Software Mentions: 1
Published: over 8 years ago

10.1186/s12953-020-00165-5

Differences in plasma proteomes for active tuberculosis, latent tuberculosis and non-tuberculosis mycobacterial lung disease patients with and without ESAT-6/CFP10 stimulation
Cited by: 5
Author(s): Takele Teklu, Biniam Wondale, Biruhalem Taye, Milkessa HaileMariam, Shiferaw Bekele, Mesfin Tamirat, Aboma Zewude, Temesgen Mohamed, Girmay Medhin, Mengistu Legesse, Yu Yoshida, Gobena Ameni, Rembert Pieper
Software Mentions: 1
Published: almost 6 years ago

10.1128/JVI.03262-15

ARID3B: a Novel Regulator of the Kaposi's Sarcoma-Associated Herpesvirus Lytic Cycle
Cited by: 10
Author(s): Janet Wood, James R. Boyne, Christina Paulus, Brian R. Jackson, Michael Nevels, Adrian Whitehouse, David J. Hughes
Software Mentions: 1
Published: almost 10 years ago

10.7554/eLife.37798

Comment on ‘YcgC represents a new protein deacetylase family in prokaryotes’
Cited by: 8
Author(s): Magdalena Kremer, Nora Kuhlmann, Marius Lechner, Linda Baldus, Michael Lammers
Software Mentions: 1
Published: about 8 years ago

10.7554/eLife.37623

Temporal profiling of redox-dependent heterogeneity in single cells
Cited by: 23
Author(s): Meytal Radzinski, Rosi Fassler, Ohad Yogev, William Breuer, Nadav Shai, Jenia Gutin, Sidra Ilyas, Yifat Geffen, Sabina Tsytkin-Kirschenzweig, Yaakov Nahmias, Tommer Ravid, Nir Friedman, Maya Schuldiner, Dana Reichmann
Software Mentions: 1
Published: about 8 years ago

10.7554/eLife.06848

ISG15 counteracts Listeria monocytogenes infection
Cited by: 82
Author(s): Lilliana Radoshevich, Francis Impens, David Ribet, J.J. Quereda, To Nam Tham, Marie‐Anne Nahori, Hélène Bierne, Olivier Dussurget, Javier Pizarro‐Cerdá, Klaus–Peter Knobeloch, Pascale Cossart
Software Mentions: 1
Published: about 11 years ago

10.7554/eLife.15460

Phosphorylation acts positively and negatively to regulate MRTF-A subcellular localisation and activity
Cited by: 66
Author(s): Richard Panayiotou, Francesc Miralles, Rafał Pawłowski, Jessica Diring, Helen Flynn, Mark Skehel, Richard Treisman
Software Mentions: 1
Published: about 10 years ago

10.1371/journal.ppat.1009134

The SUMOylation pathway suppresses arbovirus replication in Aedes aegypti cells
Cited by: 4
Author(s): Samuel Stokes, Floriane Almire, Michael H. Tatham, Steven McFarlane, Peter Mertens, Emilie Pondeville, Chris Boutell
Software Mentions: 1
Published: over 5 years ago

10.7554/eLife.08153

Paradoxical resistance of multiple myeloma to proteasome inhibitors by decreased levels of 19S proteasomal subunits
Cited by: 80
Author(s): Diego Acosta‐Alvear, Min Y. Cho, Thomas Wild, Tonia J. Buchholz, Andrew D. Lerner, Olga Šimáková, Jamie Hahn, Neha Korde, Ola Landgren, Irina Marić, Chunaram Choudhary, Peter Walter, Jonathan S. Weissman, Martin Kampmann
Software Mentions: 1
Published: almost 11 years ago

10.7554/eLife.25555

Full length RTN3 regulates turnover of tubular endoplasmic reticulum via selective autophagy
Cited by: 280
Author(s): Paolo Grumati, Giulio Morozzi, Soraya Hölper, Muriel Mari, Marie Lena I.E. Harwardt, Riqiang Yan, Stefan Müller, Fulvio Reggiori, Mike Heilemann, Ivan Đikić
Software Mentions: 1
Published: about 9 years ago

10.1186/s12953-016-0110-0

An interactomics overview of the human and bovine milk proteome over lactation
Cited by: 33
Author(s): Lina Zhang, Aalt D. J. van Dijk, Kasper Hettinga
Software Mentions: 1
Published: over 9 years ago

10.7554/eLife.62470

Identification of host proteins differentially associated with HIV-1 RNA splice variants
Cited by: 14
Author(s): Rachel A. Knoener, Edward L. Evans, Jordan T. Becker, Mark Scalf, Bayleigh E. Benner, Nathan M. Sherer, Lloyd M. Smith
Software Mentions: 1
Published: over 5 years ago

10.1186/s12953-015-0086-1

The calcified eggshell matrix proteome of a songbird, the zebra finch (Taeniopygia guttata)
Cited by: 29
Author(s): Karlheinz Mann
Software Mentions: 1
Published: over 10 years ago

10.1186/s12953-015-0078-1

Proteomic analysis of quail calcified eggshell matrix: a comparison to chicken and turkey eggshell proteomes
Cited by: 27
Author(s): Karlheinz Mann, Matthias Mann
Software Mentions: 1
Published: almost 11 years ago

10.3390/nu13082657

Anti-Salmonella Activity and Peptidomic Profiling of Peptide Fractions Produced from Sturgeon Fish Skin Collagen (Huso huso) Using Commercial Enzymes
Cited by: 8
Author(s): Maryam Atef, Yasmina Ait Chait, Seýed Mahdi Ojagh, Ali Mohammad Latifi, Mina Esmaeili, Riadh Hammami, Chibuike C. Udenigwe
Software Mentions: 1
Published: about 5 years ago

10.1186/1477-5956-12-41

Probing SH2-domains using Inhibitor Affinity Purification (IAP)
Cited by: 10
Author(s): Michael Höfener, Stephanie Heinzlmeir, Bernhard Küster, Norbert Sewald
Software Mentions: 1
Published: about 12 years ago

10.1155/2019/1659468

Oxidative Stress Induced by the Deubiquitinase Inhibitor b-AP15 Is Associated with Mitochondrial Impairment
Cited by: 8
Author(s): Xiaonan Zhang, Belén Espinosa, Amir Ata Saei, Pädraig D’Arcy, Roman A. Zubarev, Stig Linder
Software Mentions: 1
Published: about 7 years ago

10.1186/1477-5956-11-43

Quantitative proteomics reveals regulatory differences in the chondrocyte secretome from human medial and lateral femoral condyles in osteoarthritic patients
Cited by: 35
Author(s): Johan Stenberg, Ulla Rüetschi, Eva Skiöldebrand, Johan Kärrholm, Anders Lindahl
Software Mentions: 1
Published: almost 13 years ago

10.3390/nu11102263

Comprehensive Detection of Isopeptides between Human Tissue Transglutaminase and Gluten Peptides
Cited by: 11
Author(s): Barbara Lexhaller, Christina Ludwig, Katharina Anne Scherf
Software Mentions: 1
Published: almost 7 years ago

10.3390/nu9090963

Effect of Processing Intensity on Immunologically Active Bovine Milk Serum Proteins
Cited by: 53
Author(s): Tabea Brick, Markus Ege, Sjef Boeren, A. Böck, Erika von Mutius, Jacques Vervoort, Kasper Hettinga
Software Mentions: 1
Published: almost 9 years ago

10.1038/sdata.2018.31

Quantitative mapping of RNA-mediated nuclear estrogen receptor β interactome in human breast cancer cells
Cited by: 22
Author(s): Giorgio Giurato, Giovanni Nassa, Annamaria Salvati, Elena Alexandrova, Francesca Rizzo, Tuula A. Nyman, Alessandro Weisz, Roberta Tarallo
Software Mentions: 1
Published: over 8 years ago

10.1038/sdata.2018.128

Mass spectrometry quantitation of proteins from small pools of developing auditory and vestibular cells
Cited by: 16
Author(s): Jocelyn F. Krey, Déborah I. Scheffer, Dongseok Choi, Ashok P. Reddy, Larry L. David, David P. Corey, Peter G. Barr-Gillespie
Software Mentions: 1
Published: about 8 years ago

10.1038/sdata.2015.47

The proteome of mouse vestibular hair bundles over development
Cited by: 34
Author(s): Jocelyn F. Krey, Nicholas E. Sherman, Erin Jeffery, Dongseok Choi, Peter G. Barr-Gillespie
Software Mentions: 1
Published: almost 11 years ago

10.1038/s41597-019-0166-7

A dataset describing a suite of novel antibody reagents for the RAS signaling network
Cited by: 4
Author(s): Regine M. Schoenherr, Dongqing Huang, Uliana J. Voytovich, Richard G. Ivey, Jacob J. Kennedy, Richard G. Saul, Simona Colantonio, Rhonda R. Roberts, Joseph G. Knotts, Jan Kaczmarczyk, Candice Perry, Stephen M. Hewitt, William Bocik, Gordon Whiteley, Tara Hiltke, Emily S. Boja, Henry Rodriguez, Jeffrey R. Whiteaker, Amanda G. Paulovich
Software Mentions: 1
Published: almost 7 years ago

10.1038/s41597-019-0179-2

The RNA-mediated estrogen receptor α interactome of hormone-dependent human breast cancer cell nuclei
Cited by: 13
Author(s): Giovanni Nassa, Giorgio Giurato, Annamaria Salvati, Valerio Gigantino, Giovanni Pecoraro, Jessica Lamberti, Francesca Rizzo, Tuula A. Nyman, Roberta Tarallo, Alessandro Weisz
Software Mentions: 1
Published: almost 7 years ago

10.1126/sciadv.aay6804

A conserved ATP- and Scc2/4-dependent activity for cohesin in tethering DNA molecules
Cited by: 35
Author(s): Pilar Gutiérrez-Escribano, Matthew D. Newton, Aida Llauró, Jonas Huber, Loredana Tanasie, Joseph Davy, Isabel Aly, Ricardo Aramayo, Alex Montoya, Holger Kramer, Johannes Stigler, David Rueda, Luís Aragón
Software Mentions: 1
Published: almost 7 years ago

10.1038/s41597-020-00678-w

Proteomic and transcriptomic profiling of aerial organ development in Arabidopsis
Cited by: 18
Author(s): Julia Mergner, Martin Frejno, Maxim Messerer, Daniel Lang, Patroklos Samaras, Mathias Wilhelm, Klaus Mayer, Claus Schwechheimer, Bernhard Küster
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41597-021-00884-0

Triple SILAC identified progestin-independent and dependent PRA and PRB interacting partners in breast cancer
Cited by: 3
Author(s): Prangwan Pateetin, György Hutvágner, Sarah Bajan, Matthew P. Padula, Eileen McGowan, Viroj Boonyaratanakornkit
Software Mentions: 1
Published: over 5 years ago

10.1038/srep09520

Suberoylanilide Hydroxamic Acid Treatment Reveals Crosstalks among Proteome, Ubiquitylome and Acetylome in Non-Small Cell Lung Cancer A549 Cell Line
Cited by: 68
Author(s): Qiulian Wu, Zhongyi Cheng, Jun Zhu, Xu Wang, Xiaojun Peng, Chuangbin Chen, Wenting Li, Fengsong Wang, Lejie Cao, Xingling Yi, Zhiwei Wu, Jing Li, Pingsheng Fan
Software Mentions: 1
Published: over 11 years ago

10.1038/srep12668

Establishment of a new OSCC cell line derived from OLK and identification of malignant transformation-related proteins by differential proteomics approach
Cited by: 17
Author(s): Dong Yan, Qun Zhao, Xiaoyan Ma, Guowu Ma, Caiyun Liu, Zhuwen Chen, Liyuan Yu, Xuefeng Li, Yanguang Zhang, Shujuan Shao, Jing Xiao, Jia Li, Weimin Zhang, Ming Fu, Lei Dong, X Yang, Xu Guo, Liyan Xue, Fei Fang, Qimin Zhan, Lihua Zhang
Software Mentions: 1
Published: about 11 years ago

10.1038/srep16269

Substrates of the ASB2α E3 ubiquitin ligase in dendritic cells
Cited by: 10
Author(s): Camille A. Spinner, Sandrine Uttenweiler-Joseph, Arnaud Métais, Alexandre Stella, Odile Burlet‐Schiltz, Christel Moog-Lutz, Isabelle Lamsoul, Pierre G. Lutz
Software Mentions: 1
Published: almost 11 years ago

10.1038/srep16305

Insights into immune responses in oral cancer through proteomic analysis of saliva and salivary extracellular vesicles
Cited by: 102
Author(s): Flávia Vischi Winck, Ana Carolina Prado Ribeiro, Romênia R. Domingues, Ling Liu, Diego Mauricio Riaño-Pachón, César Rivera, Thaís Bianca Brandão, Adriele Ferreira Gouvêa, Alan Roger Santos‐Silva, Ricardo D. Coletta, Adriana Franco Paes Leme
Software Mentions: 1
Published: almost 11 years ago

10.7554/eLife.56590

Parkin contributes to synaptic vesicle autophagy in Bassoon-deficient mice
Cited by: 39
Author(s): Sheila Hoffmann-Conaway, Marisa M Brockmann, Katharina Schneider, Anil Annamneedi, Kazi Atikur Rahman, Christine Bruns, Kathrin Textoris-Taube, Thorsten Trimbuch, Karl‐Heinz Smalla, Christian Rosenmund, Eckart D. Gundelfinger, Craig C. Garner, Carolina Montenegro-Venegas
Software Mentions: 1
Published: over 6 years ago

10.1038/srep20043

Alterations of the cytoskeleton in human cells in space proved by life-cell imaging
Cited by: 88
Author(s): Thomas J. Corydon, Sascha Kopp, Markus Wehland, Markus Braun, Andreas Schütte, T. Mayer, Thomas Hülsing, Hergen Oltmann, Burkhard Schmitz, Ruth Hemmersbach, Daniela Grimm
Software Mentions: 1
Published: over 10 years ago

10.1038/srep20108

Acetylome analysis reveals the involvement of lysine acetylation in biosynthesis of antibiotics in Bacillus amyloliquefaciens
Cited by: 44
Author(s): Lin Liu, Guangyuan Wang, Limin Song, Binna Lv, Wenxing Liang
Software Mentions: 1
Published: over 10 years ago

10.7554/eLife.36826

BHLHE40, a third transcription factor required for insulin induction of SREBP-1c mRNA in rodent liver
Cited by: 17
Author(s): Jing Tian, Jiaxi Wu, Xiang Chen, Tong Guo, Zhijian J. Chen, Joseph L. Goldstein, Michael S. Brown
Software Mentions: 1
Published: about 8 years ago

10.7554/eLife.47498

Increased expression of heme-binding protein 1 early in Alzheimer's disease is linked to neurotoxicity
Cited by: 21
Author(s): Oleksandr Yagensky, Mahdokht Kohansal-Nodehi, Saravanan Gunaseelan, Tamara Rabe, Saima Zafar, Inga Zerr, Wolfgang Härtig, Henning Urlaub, John Jia En Chua
Software Mentions: 1
Published: almost 7 years ago

10.7554/eLife.27574

Proteomic analysis of cell cycle progression in asynchronous cultures, including mitotic subphases, using PRIMMUS
Cited by: 50
Author(s): Tony Ly, Arlene Whigham, Rosemary G. Clarke, Alejandro J Brenes-Murillo, Brett Estes, Diana Madhessian, Emma Lundberg, Patricia Wadsworth, Angus I. Lamond
Software Mentions: 1
Published: almost 9 years ago

10.18632/oncotarget.19953

Stromal cyclin D1 promotes heterotypic immune signaling and breast cancer growth
Cited by: 31
Author(s): Timothy G. Pestell, Xuanmao Jiao, Mrityunjay Kumar, Amy R. Peck, Marco di Prisco, Shengqiong Deng, Zhiping Li, Adam Ertel, Matthew C. Casimiro, Xiaoming Ju, Agnese Di Rocco, Gabriele Di Sante, Sanjay Katiyar, Alison B. Shupp, Michael P. Lisanti, Pooja Jain, Kongming Wu, Hallgeir Rui, D. Craig Hooper, Zuoren Yu, Aaron R. Goldman, David W. Speicher, Lisa D. Laury‐Kleintop, Richard G. Pestell
Software Mentions: 1
Published: about 9 years ago

10.1038/srep22675

A covalent and cleavable antibody-DNA conjugation strategy for sensitive protein detection via immuno-PCR
Cited by: 65
Author(s): Jessie A.G.L. van Buggenum, Jan P. Gerlach, Selma Eising, Lise Schoonen, Roderick A. P. M. van Eijl, Sabine E.J. Tanis, Mark Hogeweg, Nina C. Hubner, Jan C. M. van Hest, Kimberly M. Bonger, Klaas W. Mulder
Software Mentions: 1
Published: over 10 years ago

10.1038/srep22635

Quantitative proteomics study of the neuroprotective effects of B12 on hydrogen peroxide-induced apoptosis in SH-SY5Y cells
Cited by: 26
Author(s): Liang Zhong, Juntuo Zhou, Xi Chen, Yonggen Lou, Dan Liú, Xiajuan Zou, Bin Yang, Yuxin Yin, Yan Pan
Software Mentions: 1
Published: over 10 years ago

10.1038/srep23530

Changes in Gab2 phosphorylation and interaction partners in response to interleukin (IL)-2 stimulation in T-lymphocytes
Cited by: 8
Author(s): Nerea Osinalde, Virginia Sánchez-Quiles, Blagoy Blagoev, Irina Kratchmarova
Software Mentions: 1
Published: over 10 years ago

10.1038/srep21158

Analysis of proteome dynamics inside the silk gland lumen of Bombyx mori
Cited by: 36
Author(s): Zhaoming Dong, Yan Zhang, Qianru Song, Xiaolu Zhang, Pengchao Guo, Dandan Wang, Qingyou Xia
Software Mentions: 1
Published: over 10 years ago

10.1038/srep25518

An Evaluation of Blood Compatibility of Silver Nanoparticles
Cited by: 146
Author(s): He Huang, Wenjia Lai, Menghua Cui, Ling Liang, Yuchen Lin, Qiaojun Fang, Ying Liu, Liming Xie
Software Mentions: 1
Published: over 10 years ago

10.1038/srep26557

FAM83H and casein kinase I regulate the organization of the keratin cytoskeleton and formation of desmosomes
Cited by: 40
Author(s): Tetsurō Kuga, Mitsuho Sasaki, Taisei Mikami, Y. Miake, Jun Adachi, Shimizu Maiko, Youhei Saito, Minako Koura, Yasunori Takeda, Junichiro Matsuda, Takeshi Tomonaga, Yuji Nakayama
Software Mentions: 1
Published: about 10 years ago

10.1038/srep28321

Transformed MDCK cells secrete elevated MMP1 that generates LAMA5 fragments promoting endothelial cell angiogenesis
Cited by: 26
Author(s): Shashi K. Gopal, David W. Greening, Hong Zhu, Richard J. Simpson, Rommel A. Mathias
Software Mentions: 1
Published: about 10 years ago

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