cran: Andromeda | Projects | Ecosyste.ms: Papers

10.1186/s12891-018-2380-4

In vitro chondrogenic potency of surplus chondrocytes from autologous transplantation procedures does not predict short-term clinical outcomes
Cited by: 6
Author(s): Ashraful Islam, Vegard Fossum, Ann Kristin Hansen, Ilona Urbárová, Gunnar Knutsen, Iñigo Martínez-Zubiaurre
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0159747

SILAC-MS Based Characterization of LPS and Resveratrol Induced Changes in Adipocyte Proteomics – Resveratrol as Ameliorating Factor on LPS Induced Changes
Cited by: 17
Author(s): Martha Kampp Nøhr, Toke P Kroager, Kristian W. Sanggaard, Anders Dahl Knudsen, Allan Stensballe, Jan J. Enghild, Jens Ølholm, Bjørn Richelsen, Steen B. Pedersen
Software Mentions: 1
Published: about 10 years ago

10.3390/ijms22094680

Skeletal Muscle Proteomic Profile Revealed Gender-Related Metabolic Responses in a Diet-Induced Obesity Animal Model
Cited by: 11
Author(s): Manuela Moriggi, Sara Belloli, Pietro Barbacini, Valentina Murtaj, Enrica Torretta, Linda Chaabane, Tamara Canu, Silvia Penati, Maria Luisa Malosio, Antonio Esposito, Cecilia Gelfi, Rosa María Moresco, Daniele Capitanio
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0196469

Heat shock proteins expressed in the marsupial Tasmanian devil are potential antigenic candidates in a vaccine against devil facial tumour disease
Cited by: 6
Author(s): Cesar Tovar, Amanda L. Patchett, Vitna Kim, Richard Wilson, Jocelyn M. Darby, A. Bruce Lyons, Gregory M. Woods
Software Mentions: 1
Published: over 8 years ago

10.15252/msb.20177819

Lysine acetylome profiling uncovers novel histone deacetylase substrate proteins in <i>Arabidopsis</i>
Cited by: 106
Author(s): Markus Hartl, Magdalena Füßl, Paul J. Boersema, Jan Oliver Jost, Katharina Kramer, Ahmet Bakirbas, Julia Sindlinger, Magdalena Plöchinger, Dario Leister, R. Glen Uhrig, Greg B. G. Moorhead, Jürgen Cox, Michael E. Salvucci, Dirk Schwarzer, Matthias Mann, Iris Finkemeier
Software Mentions: 1
Published: almost 9 years ago

10.18632/oncotarget.14876

Dual inhibition of histone deacetylases and phosphoinositide 3-kinase enhances therapeutic activity against B cell lymphoma
Cited by: 42
Author(s): Patrizia Mondello, Enrico Derenzini, Zahra Asgari, John Philip, Elliott J. Brea, Venkatraman Seshan, Ronald C. Hendrickson, Elisa de Stanchina, David A. Scheinberg, Anas Younes
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0148340

Identification of Cell Cycle Dependent Interaction Partners of the Septins by Quantitative Mass Spectrometry
Cited by: 17
Author(s): Christian Renz, Silke Oeljeklaus, Soeren Grinhagens, Bettina Warscheid, Nils Johnsson, Thomas Gronemeyer
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0240956

LC-MS/MS analysis of lesional and normally looking psoriatic skin reveals significant changes in protein metabolism and RNA processing
Cited by: 13
Author(s): В. В. Соболев, Alexandre Mezentsev, Rustam H. Ziganshin, А. Г. Соболева, M. Denieva, I. M. Korsunskaya, О. А. Свитич
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pone.0148030

Mycobacterium tuberculosis AtsG (Rv0296c), GlmU (Rv1018c) and SahH (Rv3248c) Proteins Function as the Human IL-8-Binding Effectors and Contribute to Pathogen Entry into Human Neutrophils
Cited by: 9
Author(s): Bożena Dziadek, Anna Brzostek, Marcin Grzybowski, Marek Fol, Agnieszka Krupa, Jakub Kryczka, Przemysław Płociński, Anna Kurdowska, Jarosław Dziadek
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0178533

Multi-level characterization of balanced inhibitory-excitatory cortical neuron network derived from human pluripotent stem cells
Cited by: 27
Author(s): Aishwarya G. Nadadhur, Javier Emperador-Melero, Marieke Meijer, Désireé Schut, Gerbren Jacobs, Ka Wan Li, Johannes Hjorth, Rhiannon M. Meredith, Ruud F. Toonen, Ronald E. van Kesteren, August B. Smit, Matthijs Verhage, Vivi M. Heine
Software Mentions: 1
Published: about 9 years ago

10.1038/s41380-018-0306-z

Complement pathway changes at age 12 are associated with psychotic experiences at age 18 in a longitudinal population-based study: evidence for a role of stress
Cited by: 29
Author(s): Melanie Föcking, Sophie Sabherwal, Hannah M. Cates, Caitríona Scaife, Patrick Dicker, Magdalena Hryniewiecka, Kieran Wynne, Bart P. F. Rutten, Glyn Lewis, Mary Cannon, Eric J. Nestler, Meike Heurich, Gerard Cagney, Stanley Zammit, David Cotter
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0178296

Prediction of adjuvant chemotherapy response in triple negative breast cancer with discovery and targeted proteomics
Cited by: 24
Author(s): Angelo Gámez‐Pozo, Lucía Trilla-Fuertes, Guillermo Prado-Vázquez, Cristina Chiva, Rocío López-Vacas, Paolo Nanni, Julia Berges-Soria, Jonas Grossmann, Mariana Díaz-Almirón, Eva Ciruelos, Eduard Sabidó, Enrique Espinosa, Juan Ángel Fresno Vara
Software Mentions: 1
Published: about 9 years ago

10.1371/journal.pone.0173853

Mapping the N-linked glycosites of rice (Oryza sativa L.) germinating embryos
Cited by: 15
Author(s): Jiezheng Ying, Juan Zhao, Yuxuan Hou, Yifeng Wang, Jian Qiu, Zhiyong Li, Xiaohong Tong, Zhaomei Shi, Jun Zhu, Jian Zhang
Software Mentions: 1
Published: over 9 years ago

10.1128/mSystems.00549-21

Proteome Dynamics during Antibiotic Persistence and Resuscitation
Cited by: 4
Author(s): Maja Šemanjski, Fabio Lino Gratani, Till Englert, Payal Nashier, Viktor Beke, Nicolas C. Nalpas, Elsa Germain, Shilpa Elizabeth George, Christiane Wolz, Kenn Gerdes, Boris Maček
Software Mentions: 1
Published: almost 5 years ago

10.1371/journal.pone.0100692

Comprehensive Identification of SUMO2/3 Targets and Their Dynamics during Mitosis
Cited by: 20
Author(s): Julie Schou, Christian D. Kelstrup, Daniel Hayward, Jesper V. Olsen, Jakob Nilsson
Software Mentions: 1
Published: about 12 years ago

10.1007/s00439-021-02345-5

ASL expression in ALDH1A1+ neurons in the substantia nigra metabolically contributes to neurodegenerative phenotype
Cited by: 6
Author(s): Shaul Lerner, Raya Eilam, Lital N. Adler, Julien Baruteau, Topaz Kreiser, Michael Tsoory, Alexander Brandis, Tevie Mehlman, Mina Ryten, Juan A. Botía, Sonia García-Ruiz, Alejandro Cisterna Garcia, Carlo Dionisi‐Vici, Giusy Ranucci, Marco Spada, Ram Mazkereth, Robert McCarter, Rima Izem, Thomas J Balmat, Rachel L. Richesson, Ehud Gazit, Sandesh C.S. Nagamani, Ayelet Erez
Software Mentions: 1
Published: almost 5 years ago

10.1371/journal.pone.0125425

Control of Morphological Differentiation of Streptomyces coelicolor A3(2) by Phosphorylation of MreC and PBP2
Cited by: 19
Author(s): Nils Ladwig, Mirita Franz‐Wachtel, Felix Hezel, Boumediene Soufi, Boris Maček, Wolfgang Wohlleben, Günther Muth
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0238037

New label-free methods for protein relative quantification applied to the investigation of an animal model of Huntington Disease
Cited by: 9
Author(s): Flora Cozzolino, Alfredo Landolfi, Ilaria Iacobucci, Vittoria Monaco, Marianna Caterino, Simona Celentano, Chiara Zuccato, Elena Cattaneo, Maria Monti
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pone.0253325

Systematic analysis of lysine 2-hydroxyisobutyrylation posttranslational modification in wheat leaves
Cited by: 6
Author(s): Feng Bo, Shengdong Li, Zongshuai Wang, Fengming Cao, Wenhua Zheng, Geng Li, Kaichang Liu
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pone.0140255

Novel Endogenous, Insulin-Stimulated Akt2 Protein Interaction Partners in L6 Myoblasts
Cited by: 6
Author(s): Michael Caruso, Xiangmin Zhang, Dongzhu Ma, Yanzhi Zhao, Yue Qi, Zhengping Yi
Software Mentions: 1
Published: almost 11 years ago

10.1371/journal.pone.0213025

Keratin 8 is a potential self-antigen in the coronary artery disease immunopeptidome: A translational approach
Cited by: 10
Author(s): Peter M. Mihailovic, Wai Man Lio, Romana Herscovici, Kuang‐Yuh Chyu, Juliana Yano, Xiaoning Zhao, Jianchang Zhou, Bo Zhou, Michael R. Freeman, Wei Yang, Prediman K. Shah, Bojan Cercek, Paul C. Dimayuga
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0135618

The Fibrin Matrix Regulates Angiogenic Responses within the Hemostatic Microenvironment through Biochemical Control
Cited by: 42
Author(s): Ektoras Hadjipanayi, Peer‐Hendrik Kuhn, Philipp Moog, Anna-Theresa Bauer, Haydar Kuekrek, Lilit Mirzoyan, Anja Hummel, Katharina Kirchhoff, Burak Salgin, Sarah von Isenburg, Ulf Dornseifer, Milomir Ninković, Hans‐Günther Machens, Arndt F. Schilling
Software Mentions: 1
Published: almost 11 years ago

10.1371/journal.pone.0231721

Proteomic analysis of protein composition of rat hippocampus exposed to morphine for 10 days; comparison with animals after 20 days of morphine withdrawal
Cited by: 8
Author(s): Hana Ujčíková, Kristína Cechová, Michal Jágr, Lenka Roubalová, Miroslava Vošahlíková, Petr Svoboda
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0168666

Comparison of Enzymatic Traits between Native and Recombinant Glycine Sarcosine N-Methyltransferase from Methanohalophilus portucalensis FDF1T
Cited by: 0
Author(s): Shu-Jung Lai, Yuchen Deng, Mei‐Chin Lai
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0048702

Nucleolar Protein Trafficking in Response to HIV-1 Tat: Rewiring the Nucleolus
Cited by: 51
Author(s): Mohamed Ali Jarboui, Carlo Bidoia, Elena Woods, Barbara Roe, Kieran Wynne, Giuliano Elia, William W. Hall, Virginie Gautier
Software Mentions: 1
Published: almost 14 years ago

10.1371/journal.pone.0104103

Large-Scale Proteomics Differentiates Cholesteatoma from Surrounding Tissues and Identifies Novel Proteins Related to the Pathogenesis
Cited by: 12
Author(s): Anders Britze, Rune Isak Dupont Birkler, Niels Gregersen, Therese Ovesen, Johan Palmfeldt
Software Mentions: 1
Published: about 12 years ago

10.1371/journal.pone.0134727

Quantitative Analysis of Differential Proteome Expression in Bladder Cancer vs. Normal Bladder Cells Using SILAC Method
Cited by: 17
Author(s): Ganglong Yang, Zhipeng Xu, Wei Lü, Xiang Li, Chao Sun, Jia Guo, Peng Xue, Feng Guan
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.pone.0253084

GroEL is an immunodominant surface-exposed antigen of Rickettsia typhi
Cited by: 4
Author(s): Jessica Rauch, Jessica Barton, Marcel Kwiatkowski, Malte Wunderlich, Pascal Steffen, Kristin Moderzynski, Stefanie Papp, Katharina Höhn, Hella Schwanke, Susanne Witt, Ulricke Richardt, Ute Mehlhoop, Hartmut Schlüter, Verena Pianka, Bernhard Fleischer, Dennis Tappe, Anke Osterloh
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pone.0084430

Dynamic Changes in Mucus Thickness and Ion Secretion during Citrobacter rodentium Infection and Clearance
Cited by: 45
Author(s): Jenny Gustafsson, Nazanin Navabi, Ana M. Rodríguez-Piñeiro, Ala H. A. Alomran, Pushpa Premaratne, Harvey R. Fernandez, Debashish Banerjee, Henrik Sjövall, Gunnar C. Hansson, Sara K. Lindén
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0199349

Radio-sensitizing effects of VE-821 and beyond: Distinct phosphoproteomic and metabolomic changes after ATR inhibition in irradiated MOLT-4 cells
Cited by: 7
Author(s): Barbora Šalovská, Hana Janečková, Ivo Fabrik, Radana Karlíková, Lucie Čecháková, Martin Ondrej, Marek Link, David Friedecký, Aleš Tichý
Software Mentions: 1
Published: about 8 years ago

10.1186/s40246-014-0022-y

Molecular signatures that correlate with induction of lens regeneration in newts: lessons from proteomic analysis
Cited by: 16
Author(s): Konstantinos Sousounis, Rital B. Bhavsar, Mario Looso, Marcus Krüger, Jessica L. Beebe, Thomas Braun, Panagiotis A. Tsonis
Software Mentions: 1
Published: over 11 years ago

10.1186/s13024-021-00470-3

Decoding distinctive features of plasma extracellular vesicles in amyotrophic lateral sclerosis
Cited by: 14
Author(s): Laura Pasetto, Stefano Callegaro, Alessandro Corbelli, Fabio Fiordaliso, Deborah Ferrara, Laura Brunelli, Giovanna Sestito, Roberta Pastorelli, Elisa Bianchi, Marina Cretich, Marcella Chiari, Cristina Potrich, Cristina Moglia, Massimo Corbo, Gianni Sorarù, Christian Lunetta, Andrea Calvo, Adriano Chiò, Gabriele Mora, Maria Pennuto, Alessandro Quattrone, Francesco Rinaldi, Vito D’Agostino, Manuela Basso, Valentina Bonetto
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pone.0172481

Characterization of the human aqueous humour proteome: A comparison of the genders
Cited by: 17
Author(s): Natarajan Perumal, Caroline Manicam, Matthias Steinicke, Sebastian Funke, Norbert Pfeiffer, Franz H. Grus
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0155324

Optimization of Liver Decellularization Maintains Extracellular Matrix Micro-Architecture and Composition Predisposing to Effective Cell Seeding
Cited by: 68
Author(s): Panagiotis Maghsoudlou, Fanourios Georgiades, H. R. Smith, À Milan, Panicos Shangaris, Luca Urbani, Stavros Loukogeorgakis, Benedetta Lombardi, Giuseppe Mazza, Charlotte K. Hagen, Neil J. Sebire, Mark Turmaine, Simon Eaton, Alessandro Olivo, Jasminka Godovac‐Zimmermann, Massimo Pinzani, Paul Gissen, Paolo De Coppi
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0197659

Alterations in the brain interactome of the intrinsically disordered N-terminal domain of the cellular prion protein (PrPC) in Alzheimer’s disease
Cited by: 17
Author(s): Sarah Ulbrich, Petra Janning, R. Seidel, Jakob Matschke, Anika Gonsberg, Sebastian Jung, Markus Glatzel, Martin Engelhard, Konstanze F. Winklhofer, Jörg Tatzelt
Software Mentions: 1
Published: about 8 years ago

10.1186/s13024-017-0170-3

Quantitative proteomic analysis of Parkin substrates in Drosophila neurons
Cited by: 57
Author(s): Martínez Amador, Benoît Lectez, Juanma Ramírez, Oliver Popp, James D. Sutherland, Sylvie Urbé, Gunnar Dittmar, Michael J. Clague, Ugo Mayor
Software Mentions: 1
Published: over 9 years ago

10.1038/s41396-020-00769-x

Proteome specialization of anaerobic fungi during ruminal degradation of recalcitrant plant fiber
Cited by: 41
Author(s): Live Heldal Hagen, Charles Brooke, Claire Shaw, Angela D. Norbeck, Hailan Piao, Magnus Ø. Arntzen, Heather Olson, Alex Copeland, Nancy G. Isern, Anil Shukla, Simon Roux, Vincent Lombard, Bernard Henrissat, Michelle O’Malley, Igor V. Grigoriev, Susannah G. Tringe, Roderick I. Mackie, Ljiljana Paša‐Tolić, Phillip B. Pope, Matthias Hess
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pone.0141527

Comparison of the Cowpox Virus and Vaccinia Virus Mature Virion Proteome: Analysis of the Species- and Strain-Specific Proteome
Cited by: 25
Author(s): Joerg Doellinger, Lars Schaade, Andreas Nitsche
Software Mentions: 1
Published: almost 11 years ago

10.1371/journal.pone.0052692

Proteomic Comparison of MCF-7 Tumoursphere and Monolayer Cultures
Cited by: 20
Author(s): Brian J. Morrison, Marcus L. Hastie, Yadveer S. Grewal, Zara C. Bruce, Chris Schmidt, Brent A. Reynolds, Jeffrey J. Gorman, J. Alejandro Lopez
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0142162

A Pilot Proteogenomic Study with Data Integration Identifies MCT1 and GLUT1 as Prognostic Markers in Lung Adenocarcinoma
Cited by: 30
Author(s): Paul A. Stewart, Katja Parapatics, Eric A. Welsh, André C. Müller, Haoyun Cao, Bin Fang, John M. Koomen, Steven Eschrich, Keiryn L. Bennett, Eric B. Haura
Software Mentions: 1
Published: almost 11 years ago

10.1371/journal.pone.0091380

Identification of Protein Partners in Mycobacteria Using a Single-Step Affinity Purification Method
Cited by: 20
Author(s): Przemysław Płociński, Daniel Laubitz, Dominik Cysewski, Krystian Stoduś, Katarzyna Kowalska, Andrzej Dziembowski
Software Mentions: 1
Published: over 12 years ago

10.1038/s41396-018-0243-5

Adaptive mechanisms that provide competitive advantages to marine bacteroidetes during microalgal blooms
Cited by: 75
Author(s): Frank Unfried, Stefan Becker, C.S. Robb, Jan Hendrik Hehemann, Stephanie Markert, Stefan E. Heiden, Tjorven Hinzke, Dörte Becher, Greta Reintjes, Karen Krüger, Burak Avcı, Lennart Kappelmann, Richard L. Hahnke, Tanja Fischer, Jens Harder, Hanno Teeling, Bernhard M. Fuchs, Tristan Barbeyron, Rudolf Amann, Thomas Schweder
Software Mentions: 1
Published: about 8 years ago

10.1371/journal.pone.0183908

Comparative quantitative proteomic analysis of disease stratified laser captured microdissected human islets identifies proteins and pathways potentially related to type 1 diabetes
Cited by: 25
Author(s): Julius O. Nyalwidhe, Wojciech J. Grzesik, Tanya C. Burch, Michele L. Semeraro, Tayab Waseem, Ivan Gerling, Raghavendra G. Mirmira, Margaret A. Morris, Jerry L. Nadler
Software Mentions: 1
Published: almost 9 years ago

10.1186/s12866-018-1208-6

Characterisation of the cellular and proteomic response of Galleria mellonella larvae to the development of invasive aspergillosis
Cited by: 24
Author(s): Gerard Sheehan, Gráinne Clarke, Kevin Kavanagh
Software Mentions: 1
Published: about 8 years ago

10.1371/journal.pone.0147586

Proteome-Wide Identification of Lysine Succinylation in the Proteins of Tomato (Solanum lycopersicum)
Cited by: 66
Author(s): Weibo Jin, Fuyong Wu
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0204522

Time-resolved proteomics of adenovirus infected cells
Cited by: 16
Author(s): Alberto Valdés, Hongxing Zhao, Ulf Pettersson, Sara Bergström Lind
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pone.0177871

BIRC6 mediates imatinib resistance independently of Mcl-1
Cited by: 15
Author(s): Denis Okumu, Michael P. East, Merlin Levine, Laura E. Herring, Raymond Zhang, Samuel F. Gilbert, David W. Litchfield, Yanping Zhang, Lee M. Graves
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0116702

ABCE1 Is a Highly Conserved RNA Silencing Suppressor
Cited by: 15
Author(s): Kairi Kärblane, Jelena Gerassimenko, Lenne Nigul, Alla Piirsoo, Agata Smialowska, Kadri Vinkel, Per Kylsten, Karl Ekwall, Peter Swoboda, Erkki Truve, Cecilia Sarmiento
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0186806

Mass spectrometry-based quantification of the cellular response to ultraviolet radiation in HeLa cells
Cited by: 4
Author(s): Hong Xu, Xuanyi Chen, Nanjiao Ying, Meixia Wang, Xin Xu, Rongyi Shi, Yuejin Hua
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0232585

Comparison of a human neuronal model proteome upon Japanese encephalitis or West Nile Virus infection and potential role of mosquito saliva in neuropathogenesis
Cited by: 4
Author(s): Benoît Besson, Justine Basset, Sandrine Gatellier, Hélène Chabrolles, Thibault Chaze, Véronique Hourdel, Mariette Matondo, Nathalie Pardigon, Valérie Choumet
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0094391

Analysis of Expressed Genes of the Bacterium ‘Candidatus Phytoplasma Mali’ Highlights Key Features of Virulence and Metabolism
Cited by: 28
Author(s): Christin Siewert, Toni Luge, Bojan Duduk, E. Seemüller, Carmen Büttner, Sascha Sauer, Michael Kube
Software Mentions: 1
Published: over 12 years ago

10.3390/molecules21030322

Proteomic Profiling of Iron Overload-Induced Human Hepatic Cells Reveals Activation of TLR2-Mediated Inflammatory Response
Cited by: 8
Author(s): Xiang Li, Shiwei Li, Minyan Lu, Guohua Yang, Yongchun Shen, Xin Zhou
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0206478

Protein variability in cerebrospinal fluid and its possible implications for neurological protein biomarker research
Cited by: 25
Author(s): Lukas Schilde, Steffen Kösters, Simone Steinbach, Karin Schork, Martin Eisenacher, Sara Galozzi, Michael Turewicz, Katalin Barkovits, Brit Mollenhauer, Katrin Marcus, Caroline May
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0151764

Proteins in the Cocoon of Silkworm Inhibit the Growth of Beauveria bassiana
Cited by: 23
Author(s): Xiaomeng Guo, Zhaoming Dong, Yan Zhang, Youshan Li, Huawei Liu, Qingyou Xia, Ping Zhao
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0072951

Accurate LC Peak Boundary Detection for 16O/18O Labeled LC-MS Data
Cited by: 8
Author(s): Jian Cui, Konstantinos Pétritis, Tony Tegeler, Brianne Petritis, Xuepo Ma, Yufang Jin, Shou‐Jiang Gao, Jianqiu Michelle Zhang
Software Mentions: 1
Published: almost 13 years ago

10.3390/molecules25143109

Optimisation of Sporosori Purification and Protein Extraction Techniques for the Biotrophic Protozoan Plant Pathogen Spongospora subterranea
Cited by: 9
Author(s): Sadegh Balotf, Richard Wilson, Robert S. Tegg, David S. Nichols, C. R. Wilson
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pone.0198985

Proteome and microbiota analysis reveals alterations of liver-gut axis under different stocking density of Peking ducks
Cited by: 14
Author(s): Yuqin Wu, Jianhui Li, Xuze Qin, Shiqiang Sun, Zhibin Xiao, Xiaoyu Dong, Muhammad Shahid, Dafei Yin, Jianmin Yuan
Software Mentions: 1
Published: almost 8 years ago

10.3390/molecules21010084

Quantitative Analysis of Differential Proteome Expression in Epithelial-to-Mesenchymal Transition of Bladder Epithelial Cells Using SILAC Method
Cited by: 10
Author(s): Ganglong Yang, Wei Lü, Di Yu, Chao Sun, Jia Guo, Li Zheng, Feng Guan
Software Mentions: 1
Published: over 10 years ago

10.3390/cancers12030685

Vitamin C Restricts the Emergence of Acquired Resistance to EGFR-Targeted Therapies in Colorectal Cancer
Cited by: 39
Author(s): Annalisa Lorenzato, Alessandro Magrì, Vittoria Matafora, Valentina Audrito, Pamela Arcella, Luca Lazzari, Monica Montone, Simona Lamba, Silvia Deaglio, Salvatore Siena, Andrea Bertotti, Livio Trusolino, Ángela Bachi, Federica Di Nicolantonio, Alberto Bardelli, Sabrina Arena
Software Mentions: 1
Published: over 6 years ago

10.3390/cancers12113443

Metabolic Plasticity Is an Essential Requirement of Acquired Tyrosine Kinase Inhibitor Resistance in Chronic Myeloid Leukemia
Cited by: 4
Author(s): Miriam G. Contreras Mostazo, Nina Kurrle, Marta Casado, Dominik C. Fuhrmann, Islam Alshamleh, Björn Häupl, Paloma Martı́n-Sanz, Bernhard Brüne, Hubert Serve, Harald Schwalbe, Frank Schnütgen, Silvia Marín, Marta Cascante
Software Mentions: 1
Published: over 5 years ago

10.3390/molecules23051217

Synthesis and Insecticidal Activity of Mesoionic Pyrido[1,2-α]pyrimidinone Derivatives Containing a Neonicotinoid Moiety
Cited by: 10
Author(s): Jin Pan, Lu Yu, Dengyue Liu, Deyu Hu
Software Mentions: 1
Published: about 8 years ago

10.3390/cancers12092383

Marker Identification of the Grade of Dysplasia of Intraductal Papillary Mucinous Neoplasm in Pancreatic Cyst Fluid by Quantitative Proteomic Profiling
Cited by: 9
Author(s): Misol Do, Hongbeom Kim, Dongyoon Shin, Joonho Park, Haeryoung Kim, Youngmin Han, Jin Young Jang, Youngsoo Kim
Software Mentions: 1
Published: almost 6 years ago

10.3390/molecules26082164

Effects of 3FTx Protein Fraction from Naja ashei Venom on the Model and Native Membranes: Recognition and Implications for the Mechanisms of Toxicity
Cited by: 6
Author(s): Barbara Dyba, Elżbieta Rudolphi-Szydło, Anna Barbasz, Agnieszka Czyżowska, Konrad K. Hus, Vladimir Petrílla, Monika Petrillová, Jaroslav Legáth, Aleksandra Bocian
Software Mentions: 1
Published: over 5 years ago

10.3390/cancers12061371

Progression-Dependent Altered Metabolism in Osteosarcoma Resulting in Different Nutrient Source Dependencies
Cited by: 9
Author(s): Raphaela Fritsche‐Guenther, Yoann Gloaguen, Marieluise Kirchner, Philipp Mertins, Per‐Ulf Tunn, Jennifer Kirwan
Software Mentions: 1
Published: about 6 years ago

10.3390/molecules25235571

Profiling the Murine SUMO Proteome in Response to Cardiac Ischemia and Reperfusion Injury
Cited by: 10
Author(s): Paul W. Hotz, Marion Wiesnet, Georg Tascher, Thomas Braun, Stefan Müller, Luca Mendler
Software Mentions: 1
Published: over 5 years ago

10.3390/cancers13143404

Tyrosine Phosphoproteomics of Patient-Derived Xenografts Reveals Ephrin Type-B Receptor 4 Tyrosine Kinase as a Therapeutic Target in Pancreatic Cancer
Cited by: 2
Author(s): Santosh Renuse, Vijay Sagar Madamsetty, Dong-Gi Mun, Anil K. Madugundu, Smrita Singh, Savita Udainiya, Kiran K. Mangalaparthi, Min‐Sik Kim, Ren Liu, Sunil Kumar, Valery Krasnoperov, Mark J. Truty, Rondell P. Graham, Parkash S. Gill, Debabrata Mukhopadhyay, Akhilesh Pandey
Software Mentions: 1
Published: about 5 years ago

10.3390/cancers13010062

The Extracellular Bone Marrow Microenvironment—A Proteomic Comparison of Constitutive Protein Release by In Vitro Cultured Osteoblasts and Mesenchymal Stem Cells
Cited by: 14
Author(s): Elise Aasebø, Even Birkeland, Frode Selheim, Frode S. Berven, Annette K. Brenner, Øystein Bruserud
Software Mentions: 1
Published: over 5 years ago

10.3390/ijms22115815

Connexin 43 and Connexin 26 Involvement in the Ponatinib-Induced Cardiomyopathy: Sex-Related Differences in a Murine Model
Cited by: 11
Author(s): Rosalinda Madonna, Stefania Moscato, Enza Polizzi, Damiana Pieragostino, Maria Concetta Cufaro, Piero Del Boccio, Francesco Bianchi, Raffaele De Caterina, Letizia Mattii
Software Mentions: 1
Published: about 5 years ago

10.3390/cancers11050723

Profiling of Epigenetic Features in Clinical Samples Reveals Novel Widespread Changes in Cancer
Cited by: 19
Author(s): Roberta Noberini, Camilla Restellini, Evelyn Oliva Savoia, Francesco Raimondi, Lavinia Ghiani, Maria Giovanna Jodice, Giovanni Bertalot, Giuseppina Bonizzi, Maria Capra, Fausto Maffini, Marta Tagliabue, Mohssen Ansarin, Michela Lupia, Marco Giordano, Daniela Osti, Giuliana Pelicci, Susanna Chiocca, Tiziana Bonaldi
Software Mentions: 1
Published: about 7 years ago

10.3390/cancers13071646

Death Receptor 5 (TNFRSF10B) Is Upregulated and TRAIL Resistance Is Reversed in Hypoxia and Normoxia in Colorectal Cancer Cell Lines after Treatment with Skyrin, the Active Metabolite of Hypericum spp.
Cited by: 7
Author(s): Marián Babinčák, Rastislav Jendželovský, Ján Košuth, Martin Majerník, Jana Vargová, Kamil Mikulášek, Zbyněk Zdráhal, Peter Fedoročko
Software Mentions: 1
Published: over 5 years ago

10.3390/cancers13112727

Modulation of Early Neutrophil Granulation: The Circulating Tumor Cell-Extravesicular Connection in Pancreatic Ductal Adenocarcinoma
Cited by: 9
Author(s): Harrys K.C. Jacob, John Lalith Charles Richard, Rossana Signorelli, Tyler Kashuv, Shweta Lavania, Utpreksha Vaish, Ranjitha Boopathy, Ashley Middleton, Melinda Minucci Boone, Sundaram Ramakrishnan, Vikas Dudeja, Ashok K. Saluja
Software Mentions: 1
Published: about 5 years ago

10.3390/molecules26113345

A Multi-Omics Study of Human Testis and Epididymis
Cited by: 4
Author(s): Weimin Zheng, Yang Zhang, Chuanyu Sun, Shengyang Ge, Yimei Tan, Huali Shen, Pengyuan Yang
Software Mentions: 1
Published: about 5 years ago

10.1186/s13046-018-0737-z

Lipid accumulation in human breast cancer cells injured by iron depletors
Cited by: 15
Author(s): Maida De Bortoli, Elena Taverna, Elisa Maffioli, Patrizia Casalini, Francesco Crisafi, Vikas Kumar, Claudio Caccia, Dario Polli, Gioacchino Tedeschi, Italia Bongarzone
Software Mentions: 1
Published: over 8 years ago

10.3390/cancers13112840

A Novel Benzopyrane Derivative Targeting Cancer Cell Metabolic and Survival Pathways
Cited by: 3
Author(s): Dana M. Zaher, Wafaa Ramadan, Raafat El‐Awady, Hany A. Omar, Fatema Hersi, Vunnam Srinivasulu, Ibrahim Y. Hachim, Farah Al-Marzooq, Cijo George Vazhappilly, Salim Merali, Carmen Merali, Nelson C. Soares, Paul Schilf, Saleh M. Ibrahim, Taleb H. Al‐Tel
Software Mentions: 1
Published: about 5 years ago

10.3390/cancers13030563

Cysteine-Rich Angiogenic Inducer 61: Pro-Survival Function and Role as a Biomarker for Disseminating Breast Cancer Cells
Cited by: 5
Author(s): Kai Bartkowiak, Isabel Heidrich, Marcel Kwiatkowski, Tobias M. Gorges, Antje Andreas, Maria Geffken, Karl Verpoort, Volkmar Müller, Hartmut Schlüter, Klaus Pantel
Software Mentions: 1
Published: over 5 years ago

10.3390/cancers12040790

Proteomic Discovery of Biomarkers to Predict Prognosis of High-Grade Serous Ovarian Carcinoma
Cited by: 15
Author(s): Se Ik Kim, Min-A Jung, Kisoon Dan, Sungyoung Lee, Cheol Lee, Hee Seung Kim, Hyun Hoon Chung, Jae Weon Kim, Noh Hyun Park, Yong Sang Song, Dohyun Han, Maria Lee
Software Mentions: 1
Published: over 6 years ago

10.1186/s13046-021-01879-w

Overexpressed WDR3 induces the activation of Hippo pathway by interacting with GATA4 in pancreatic cancer
Cited by: 9
Author(s): Wenjie Su, Shaihong Zhu, Kai Chen, Hongji Yang, Mingwu Tian, Qiang Fu, Guo‐Ming Shi, Shijian Feng, Dianyun Ren, Xin Jin, Chong Yang
Software Mentions: 1
Published: over 5 years ago

10.1186/s13046-021-02095-2

circHMGCS1–016 reshapes immune environment by sponging miR-1236-3p to regulate CD73 and GAL-8 expression in intrahepatic cholangiocarcinoma
Cited by: 24
Author(s): Yaping Xu, Ze-Ning Dong, Siwei Wang, Yi-Min Zheng, Chi Zhang, Yingqun Zhou, Yujie Zhao, Yan Zhao, Wenquan Feng, Rui Peng, Maochun Tang, Dou‐Sheng Bai, Xiaoyong Huang, Chuanyong Guo
Software Mentions: 1
Published: almost 5 years ago

10.1186/s12866-017-1034-2

Site-specific His/Asp phosphoproteomic analysis of prokaryotes reveals putative targets for drug resistance
Cited by: 18
Author(s): Shu-Jung Lai, I-Fan Tu, Wan-Chen Wu, Jhih-Tian Yang, Louis Y. P. Luk, Mei‐Chin Lai, Yu‐Hsuan Tsai, Shih‐Hsiung Wu
Software Mentions: 1
Published: about 9 years ago

10.3390/molecules26020287

The UFM1 Pathway Impacts HCMV US2-Mediated Degradation of HLA Class I
Cited by: 7
Author(s): A.B.C. Schuren, Ingrid G. J. Boer, Ellen M Bouma, Michael L. van de Weijer, Ana I. Costa, Philipp Hubel, Andreas Pichlmair, Robert Jan Lebbink, Emmanuel J. H. J. Wiertz
Software Mentions: 1
Published: over 5 years ago

10.3390/molecules25184071

High-Resolution Mass Spectrometry-Based Approaches for the Detection and Quantification of Peptidase Activity in Plasma
Cited by: 10
Author(s): Elisa Maffioli, Zhenze Jiang, Simona Nonnis, Armando Negri, Valentina Romeo, Christopher B. Lietz, Vivian Hook, Giuseppe Ristagno, Giuseppe Baselli, Erik B. Kistler, Federico Aletti, Anthony J. O’Donoghue, Gioacchino Tedeschi
Software Mentions: 1
Published: almost 6 years ago

10.3390/cancers13153890

Mass Spectrometry-Based Proteomic Discovery of Prognostic Biomarkers in Adrenal Cortical Carcinoma
Cited by: 10
Author(s): Han Na Jang, Seong-Yong Moon, Kyeong Cheon Jung, Sang Wan Kim, Hyeyoon Kim, Dohyun Han, Jung Hee Kim
Software Mentions: 1
Published: about 5 years ago

10.3390/cancers13040585

Phenotypic and Proteomic Analysis Identifies Hallmarks of Blood Circulating Extracellular Vesicles in NSCLC Responders to Immune Checkpoint Inhibitors
Cited by: 24
Author(s): Davide Brocco, Paola Lanuti, Damiana Pieragostino, Maria Concetta Cufaro, Pasquale Simeone, Giuseppina Bologna, Pietro Di Marino, Michele De Tursi, Antonino Grassadonia, Luciana Irtelli, Laura De Lellis, Serena Veschi, Rosalba Florio, L. Federici, Marco Marchisio, Sebastianó Miscia, Alessandro Cama, Nicola Tinari, Piero Del Boccio
Software Mentions: 1
Published: over 5 years ago

10.1084/jem.20200206

Deciphering and predicting CD4+ T cell immunodominance of influenza virus hemagglutinin
Cited by: 26
Author(s): Antonino Cassotta, Philipp Paparoditis, Roger Geiger, Ramgopal R. Mettu, Samuel J. Landry, Alessia Donati, Marco Benevento, Mathilde Foglierini, David Lewis, Antonio Lanzavecchia, Federica Sallusto
Software Mentions: 1
Published: about 6 years ago

10.3390/cancers11081166

Cisplatin-Resistance in Oral Squamous Cell Carcinoma: Regulation by Tumor Cell-Derived Extracellular Vesicles
Cited by: 48
Author(s): Xin Hui Khoo, Ian C. Paterson, Bey Hing Goh, Wai Leng Lee
Software Mentions: 1
Published: about 7 years ago

10.3390/cancers11122032

Gigantol Targets Cancer Stem Cells and Destabilizes Tumors via the Suppression of the PI3K/AKT and JAK/STAT Pathways in Ectopic Lung Cancer Xenografts
Cited by: 33
Author(s): Nattanan Losuwannarak, Arnatchai Maiuthed, Nakarin Kitkumthorn, Asada Leelahavanichkul, Sittiruk Roytrakul, Pithi Chanvorachote
Software Mentions: 1
Published: over 6 years ago

10.3390/cancers12041018

Moesin (MSN) as a Novel Proteome-Based Diagnostic Marker for Early Detection of Invasive Bladder Urothelial Carcinoma in Liquid-Based Cytology
Cited by: 10
Author(s): Jeong Hwan Park, Cheol Lee, Dohyun Han, Jae Seok Lee, Kyung Min Lee, Min Song, Kwangsoo Kim, Heonyi Lee, Kyung Chul Moon, Youngsoo Kim, Min-A Jung, Jiwon Moon, Hyebin Lee, Han Suk Ryu
Software Mentions: 1
Published: over 6 years ago

10.3390/molecules26082397

Proteomic and Bioinformatic Investigation of Altered Pathways in Neuroglobin-Deficient Breast Cancer Cells
Cited by: 16
Author(s): Michele Costanzo, Marco Fiocchetti, Paolo Ascenzi, Maria Marino, Marianna Caterino, Margherita Ruoppolo
Software Mentions: 1
Published: over 5 years ago

10.1111/mec.15298

Evidence for a role of protein phosphorylation in the maintenance of the cnidarian–algal symbiosis
Cited by: 5
Author(s): Fabia Simona, Huoming Zhang, Christian R. Voolstra
Software Mentions: 1
Published: over 6 years ago

10.1016/j.cell.2016.06.015

Pre-assembled Nuclear Pores Insert into the Nuclear Envelope during Early Development
Cited by: 92
Author(s): Bernhard Hampoelz, Marie‐Therese Mackmull, Pedro Machado, Paolo Ronchi, Khanh Huy Bui, Nicole L. Schieber, Rachel Santarella-Mellwig, Aleksandar Necakov, Amparo Andrés-Pons, Jean‐Marc Philippe, Thomas Lecuit, Yannick Schwab, Martin Beck
Software Mentions: 1
Published: about 10 years ago

10.1074/mcp.M116.064428

Vascular Endothelial Growth Factor (VEGF) Promotes Assembly of the p130Cas Interactome to Drive Endothelial Chemotactic Signaling and Angiogenesis
Cited by: 24
Author(s): Ivor H. Evans, Susan Kennedy, Ketevan Paliashvili, Tapesh Santra, Maiko Yamaji, Ruth C. Lovering, Gary Britton, Paul Frankel, Walter Kölch, Ian Zachary
Software Mentions: 1
Published: over 9 years ago

10.1186/s13578-021-00588-3

Global analysis of HBV-mediated host proteome and ubiquitylome change in HepG2.2.15 human hepatoblastoma cell line
Cited by: 8
Author(s): Shuo Yuan, Tanzeel Yousaf, Xuezhang Tian, Dandan Zheng, Wajeeha Naz, Jiaqi Xu, Yujia Ke, Zuopeng Zhang, Xiaojun Peng, Long Lu, Guihong Sun, Deyin Guo, Min Wang
Software Mentions: 1
Published: over 5 years ago

10.1016/j.chembiol.2019.03.006

Validation and Invalidation of Chemical Probes for the Human N-myristoyltransferases
Cited by: 27
Author(s): Wouter W. Kallemeijn, Gregor A. Lueg, Monica Faronato, Kate S. Hadavizadeh, Andrea Goya Grocin, Ok‐Ryul Song, Michael Howell, Dinis Pedro Calado, Edward W. Tate
Software Mentions: 1
Published: about 7 years ago

10.1016/j.chembiol.2017.07.009

Modulating Protein-Protein Interactions of the Mitotic Polo-like Kinases to Target Mutant KRAS
Cited by: 25
Author(s): A.J. Narvaez, Suzan Ber, Alex T. Crooks, A. N. Emery, B. Hardwick, E.G. Almeida, David J. Huggins, David Perera, Meredith Roberts-Thomson, Roberta Azzarelli, Fiona E. Hood, Ian A. Prior, David W. Walker, Richard J. Boyce, Robert G. Boyle, Samuel P. Barker, C Torrance, Grahame J. McKenzie, Ashok R. Venkitaraman
Software Mentions: 1
Published: about 9 years ago

10.1186/s12964-019-0381-z

Novel interconnections of HOG signaling revealed by combined use of two proteomic software packages
Cited by: 9
Author(s): Marion Janschitz, Natalie Romanov, Gina Varnavides, David Maria Hollenstein, Gabriela Gérecová, Gustav Ammerer, Markus Hartl, Wolfgang Reiter
Software Mentions: 1
Published: about 7 years ago

10.1186/s12964-019-0402-y

Protein phosphatase 2A modulates podocyte maturation and glomerular functional integrity in mice
Cited by: 11
Author(s): Xinyuan Zhu, Yuhong Ye, Chengxian Xu, Cunji Gao, Yingying Zhang, Jing Zhou, Weiqiang Lin, Jianhua Mao
Software Mentions: 1
Published: about 7 years ago

10.1080/15384101.2019.1632126

Identification of proteins associated with splicing factors Ntr1, Ntr2, Brr2 and Gpl1 in the fission yeast <i>Schizosaccharomyces pombe</i>
Cited by: 5
Author(s): Ingrid Čipáková, Matus Jurcik, Veronika Rubintova, Marianna Borbova, Barbora Mikolaskova, Jan Jurcik, Jana Bellová, Péter Baráth, Juraj Gregáň, Luboš Čipák
Software Mentions: 1
Published: about 7 years ago

10.1038/s41418-019-0383-9

Loss of Bcl-G, a Bcl-2 family member, augments the development of inflammation-associated colorectal cancer
Cited by: 7
Author(s): Paul M. Nguyen, Laura F. Dagley, Adele Preaudet, Nga Lam, Maybelline Giam, Ka Yee Fung, Kaheina Aizel, Gemma van Duijneveldt, Chin Wee Tan, Yumiko Hirokawa, Hon Yan Kelvin Yip, Christopher G. Love, Ashleigh R. Poh, Akshay A. D’Cruz, Charlotte Burstroem, Rebecca Feltham, Suad M Abdirahman, Kristy Meiselbach, Ronnie Ren Jie Low, Michelle Palmieri, Matthias Ernst, Andrew I. Webb, Tony Burgess, Oliver M. Sieber, Philippe Bouillet, Tracy L. Putoczki
Software Mentions: 1
Published: about 7 years ago

10.1038/s41418-020-0527-y

Drp1 modulates mitochondrial stress responses to mitotic arrest
Cited by: 17
Author(s): Aida Peña‐Blanco, Manuel D. Haschka, Andreas Jenner, Theresia Zuleger, Tassula Proikas‐Cezanne, Andreas Villunger, Ana J. García‐Sáez
Software Mentions: 1
Published: over 6 years ago

10.1038/s41419-019-1936-z

TA*p63 and GTAp63 achieve tighter transcriptional regulation in quality control by converting an inhibitory element into an additional transactivation domain
Cited by: 10
Author(s): Susanne Pitzius, Christian Osterburg, Jakob Gebel, Georg Tascher, Björn Malte Schäfer, Huiqing Zhou, Christian Münch, Volker Dötsch
Software Mentions: 1
Published: almost 7 years ago

Projects: cran: Andromeda

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