cran: Andromeda | Projects | Ecosyste.ms: Papers

10.1186/s12014-018-9193-1

Quantitative proteomic analysis of pancreatic cyst fluid proteins associated with malignancy in intraductal papillary mucinous neoplasms
Cited by: 13
Author(s): Misol Do, Dohyun Han, Joseph Injae Wang, Hyunsoo Kim, Wooil Kwon, Youngmin Han, Jin Young Jang, Youngsoo Kim
Software Mentions: 1
Published: over 6 years ago

10.1186/s12014-019-9242-4

Plasma proteomic and autoantibody profiles reveal the proteomic characteristics involved in longevity families in Bama, China
Cited by: 8
Author(s): Shengliang Ye, Li Ma, Rong Zhang, Fengjuan Liu, Peng Jiang, Jun Xu, Haijun Cao, Xi Du, Fen Lin, Lu Cheng, Xuefeng Zhou, Zhihui Shi, Yeheng Liu, Yaojin Huang, Zongkui Wang, Changqing Li
Software Mentions: 1
Published: over 5 years ago

10.1002/cti2.1185

Proteomic analysis of extracellular vesicles reveals an immunogenic cargo in rheumatoid arthritis synovial fluid
Cited by: 16
Author(s): Andrew D Foers, Laura F. Dagley, Simon Chatfield, Andrew I. Webb, Lesley Cheng, Andrew F. Hill, Ian P. Wicks, Ken C Pang
Software Mentions: 1
Published: almost 5 years ago

10.1002/ctm2.313

Quantitative acetylome analysis reveals histone modifications that may predict prognosis in hepatitis B‐related hepatocellular carcinoma
Cited by: 18
Author(s): Xiaoqiang Chai, Junkang Guo, Rui‐Zhao Dong, Xuan Yang, Chao Deng, Chuan‐Yuan Wei, Jiajie Xu, Weiyu Han, Jia‐Cheng Lu, Chao Gao, Dongmei Gao, Cheng Huang, Aiwu Ke, Shuangqi Li, Huanping Li, Yingming Tian, Zhongkai Gu, Shuxian Liu, Hang Liu, Qilong Chen, Feng Liu, Jian Zhou, Jia Fan, Guo‐Ming Shi, Feizhen Wu, Jia‐Bin Cai
Software Mentions: 1
Published: over 3 years ago

10.1038/s42003-018-0268-3

Representing dynamic biological networks with multi-scale probabilistic models
Cited by: 20
Author(s): Alexander Groß, Barbara Kracher, Johann M. Kraus, Silke D. Kühlwein, Astrid S. Pfister, Sebastian Wiese, Katrin Luckert, Oliver Pötz, Thomas Joos, Dries Van Daele, Luc De Raedt, Michael Kühl, Hans A. Kestler
Software Mentions: 1
Published: almost 6 years ago

10.1038/s42003-019-0570-8

Proteomic profiling of extracellular vesicles allows for human breast cancer subtyping
Cited by: 117
Author(s): Stamatia Rontogianni, Eleni Synadaki, Bohui Li, Marte C. Liefaard, Esther H. Lips, Jelle Wesseling, Wei Wu, Maarten Altelaar
Software Mentions: 1
Published: about 5 years ago

10.1038/s42003-020-0982-5

Phosphoproteomics identifies dual-site phosphorylation in an extended basophilic motif regulating FILIP1-mediated degradation of filamin-C
Cited by: 19
Author(s): Lena Reimann, Anja N. Schwäble, Anna L. Fricke, Wignand W. D. Mühlhäuser, Yvonne Leber, Keerthika Lohanadan, Martin Puchinger, Sascha Schäuble, Erik Faessler, Heike Wiese, Christa Reichenbach, Bettina L. Knapp, Christian D. Peikert, Friedel Drepper, Udo Hahn, Clemens Kreutz, Peter F.M. van der Ven, Gerald Radziwill, Kristina Djinović-Carugo, Dieter O. Fürst, Bettina Warscheid
Software Mentions: 1
Published: over 4 years ago

10.1080/19420889.2019.1643665

CYRI/ Fam49 Proteins Represent a New Class of Rac1 Interactors
Cited by: 6
Author(s): Jamie Whitelaw, Sérgio Lilla, Nikki R. Paul, Loïc Fort, Sara Zanivan, Laura M. Machesky
Software Mentions: 1
Published: almost 6 years ago

10.1016/j.dib.2016.03.024

Proteome-wide dataset supporting functional study of tyrosine kinases in breast cancer
Cited by: 3
Author(s): Nicos Angelopoulos, Justin Stebbing, Yang Xu, Georgios Giamas, Hua Zhang
Software Mentions: 1
Published: over 8 years ago

10.1016/j.dib.2016.02.028

Mass-spectrometry analysis of histone post-translational modifications in pathology tissue using the PAT-H-MS approach
Cited by: 6
Author(s): Roberta Noberini, Giancarlo Pruneri, Saverio Minucci, Tiziana Bonaldi
Software Mentions: 1
Published: over 8 years ago

10.1016/j.dib.2016.05.023

AHR-dependent changes in the mitochondrial proteome in response to 2,3,7,8-tetrachlorodibenzo-p-dioxin
Cited by: 3
Author(s): Hye Jin Hwang, Peter Dornbos, John J. LaPres
Software Mentions: 1
Published: about 8 years ago

10.1016/j.dib.2018.08.037

Phosphoproteome data from abscisic acid and ethylene treated Glycine max leaves
Cited by: 4
Author(s): Ravi Gupta, Cheol Woo Min, Qiong Meng, Tae Hwan Jun, Ganesh Kumar Agrawal, Randeep Rakwal, Sun Tae Kim
Software Mentions: 1
Published: about 6 years ago

10.1016/j.dib.2017.07.012

Quality control and biophysical characterisation data of VanS A
Cited by: 4
Author(s): Charlotte Hughes, Edoardo Longo, Mary K. Phillips‐Jones, Rohanah Hussain
Software Mentions: 1
Published: about 7 years ago

10.1016/j.dib.2016.07.038

Time-course proteomics dataset monitoring HeLa cells subjected to DTT induced endoplasmic reticulum stress
Cited by: 3
Author(s): Zhe Cheng, Justin Rendleman, Christine Vogel
Software Mentions: 1
Published: about 8 years ago

10.1016/j.dib.2019.104125

High-throughput mass spectrometry and bioinformatics analysis of breast cancer proteomic data
Cited by: 5
Author(s): Talita Helen Bombardelli Gomig, Iglenir João Cavalli, Ricardo Lehtonen Rodrigues de Souza, Aline Castro Rodrigues Lucena, Michel Batista, Kelly Cavalcanti Machado, Fabrício Klerynton Marchini, Fábio Albuquerque Marchi, Rubens Silveira de Lima, Cı́cero de Andrade Urban, Luciane R. Cavalli, Enilze Maria de Souza Fonseca Ribeiro
Software Mentions: 1
Published: over 5 years ago

10.1016/j.dib.2015.06.015

Proteome-wide dataset generated by iTRAQ-3DLCMS/MS technique for studying the role of FerB protein in oxidative stress in Paracoccus denitrificans
Cited by: 0
Author(s): Vendula Pernikářová, Vojtěch Sedláček, David Potěšil, Iva Procházková, Zbyněk Zdráhal, Pavel Bouchal, Igor Kučera
Software Mentions: 1
Published: about 9 years ago

10.1016/j.dib.2015.10.018

Data for proteomic analysis of ATP-binding proteins and kinase inhibitor target proteins using an ATP probe
Cited by: 1
Author(s): Jun Adachi, Marina Kishida, Shio Watanabe, Yuki Hashimoto, Kazuna Fukamizu, Takeshi Tomonaga
Software Mentions: 1
Published: almost 9 years ago

10.1016/j.dib.2014.08.004

Quantitative analysis of the Escherichia coli proteome
Cited by: 29
Author(s): Jacek R. Wiśniewski, Dariusz Rakus
Software Mentions: 1
Published: almost 10 years ago

10.1016/j.dib.2016.05.013

Proteomics data in support of the quantification of the changes of bovine milk proteins during mammary gland involution
Cited by: 10
Author(s): Irina Boggs, Brad C. Hine, Grant Smolenksi, Kasper Hettinga, Lina Zhang, Thomas T. Wheeler
Software Mentions: 1
Published: about 8 years ago

10.1016/j.dib.2015.09.034

Global proteomic characterization of microdissected estrogen receptor positive breast tumors
Cited by: 1
Author(s): Tommaso De Marchi, Ning Qing Liu, Christoph Sting, Marcel Smid, Mila Tjoa, René B. H. Braakman, Theo M. Luider, John A. Foekens, John W.M. Martens, Arzu Umar
Software Mentions: 1
Published: almost 9 years ago

10.1016/j.dib.2018.10.082

Dataset on the comparative proteomic profiling of mouse saliva and serum from wild type versus the dystrophic mdx-4cv mouse model of dystrophinopathy
Cited by: 5
Author(s): Sandra Murphy, Margit Zweyer, Rustam R. Mundegar, Dieter Swandulla, Kay Ohlendieck
Software Mentions: 1
Published: almost 6 years ago

10.1016/j.dib.2016.02.046

Changes over lactation in breast milk serum proteins involved in the maturation of immune and digestive system of the infant
Cited by: 20
Author(s): Lina Zhang, Marita de Waard, Hester Verheijen, Sjef Boeren, Jos A. Hageman, Toon van Hooijdonk, Jacques Vervoort, Johannes B. van Goudoever, Kasper Hettinga
Software Mentions: 1
Published: over 8 years ago

10.1016/j.dib.2018.04.086

Dataset describing the development, optimization and application of SRM/MRM based targeted proteomics strategy for quantification of potential biomarkers of EGFR TKI sensitivity
Cited by: 4
Author(s): Shivangi Awasthi, Tapan K. Maity, Benjamin L. Oyler, Xu Zhang, David R. Goodlett, Udayan Guha
Software Mentions: 1
Published: over 6 years ago

10.1016/j.dib.2016.05.073

Mass spectrometry data from a quantitative analysis of protein expression in gills of immuno-challenged blue mussels (Mytilus edulis)
Cited by: 6
Author(s): Katarina Hörnaeus, Julie Guillemant, Jia Mi, Bodil Hernroth, Jonas Bergquist, Sara Bergström Lind
Software Mentions: 1
Published: about 8 years ago

10.1016/j.dib.2016.05.057

Data on the kinetics of in vitro assembled chromatin
Cited by: 2
Author(s): Moritz Völker-Albert, Miriam Caroline Pusch, Andreas Schmidt, Axel Imhof
Software Mentions: 1
Published: about 8 years ago

10.1016/j.dib.2015.06.010

Myristoylation profiling in human cells and zebrafish
Cited by: 9
Author(s): Malgorzata Broncel, Remigiusz A. Serwa, Paulina Ciepla, Eberhard Krause, Margaret J. Dallman, Anthony I. Magee, Edward W. Tate
Software Mentions: 1
Published: about 9 years ago

10.1016/j.dib.2016.08.017

Hepatic SILAC proteomic data from PANDER transgenic model
Cited by: 3
Author(s): Mark G. Athanason, Stanley M. Stevens, Brant R. Burkhardt
Software Mentions: 1
Published: almost 8 years ago

10.1016/j.dib.2016.02.032

Data for global lysine-acetylation analysis in rice (Oryza sativa)
Cited by: 5
Author(s): Ye Xiong, Kai Zhang, Zhongyi Cheng, Guo‐Liang Wang, Wende Liu
Software Mentions: 1
Published: over 8 years ago

10.1016/j.dib.2016.05.060

Proteomic dataset for altered glycoprotein expression upon GALNT3 knockdown in ovarian cancer cells
Cited by: 7
Author(s): Razan Sheta, Florence Roux‐Dalvai, Christina M. Woo, Frédéric Fournier, Sylvie Bourassa, Carolyn R. Bertozzi, Arnaud Droit, Dimcho Bachvarov
Software Mentions: 1
Published: about 8 years ago

10.1016/j.devcel.2018.03.018

Transient and Partial Nuclear Lamina Disruption Promotes Chromosome Movement in Early Meiotic Prophase
Cited by: 37
Author(s): Jana Link, Dimitra Paouneskou, Maria Velkova, Anahita Daryabeigi, Triin Laos, Sara Labella, Consuelo Barroso, Sarai Pacheco, Alex Montoya, Holger Kramer, Alexander Woglar, Antoine Baudrimont, Sebastian Mathias Markert, Christian Stigloher, Enrique Martínez-Pérez, Alexander Dammermann, Manfred Alsheimer, Monique Zetka, Verena Jantsch
Software Mentions: 1
Published: over 6 years ago

10.1242/dev.199385

A patient-based medaka alg2 mutant as a model for hypo-N-glycosylation
Cited by: 2
Author(s): Sevinç Gücüm, Roman Sakson, Marcus Hoffmann, Valerian Grote, Clara Becker, Kaisa Pakari, Lars Beedgen, Christian Thiel, Erdmann Rapp, Thomas Ruppert, Thomas Thumberger, Joachim Wittbrodt
Software Mentions: 1
Published: over 3 years ago

10.3390/diagnostics11060917

Proteomic Exploration of Plasma Exosomes and Other Small Extracellular Vesicles in Pediatric Hodgkin Lymphoma: A Potential Source of Biomarkers for Relapse Occurrence
Cited by: 11
Author(s): Ombretta Repetto, Federica Lovisa, Caterina Elia, Daniel Enderle, Filippo Romanato, Salvatore Buffardi, Alessandra Sala, Marta Pillon, Agostino Steffan, Roberta Burnelli, Lara Mussolin, Maurizio Mascarin, Vallì De Re
Software Mentions: 1
Published: over 3 years ago

10.1242/dmm.040741

SILAC-based quantitative mass spectrometry-based proteomics quantifies endoplasmic reticulum stress in whole HeLa cells
Cited by: 10
Author(s): Daniel N. Itzhak, Francesca Sacco, Nagarjuna Nagaraj, Stefka Tyanova, Matthias Mann, Marta Murgia
Software Mentions: 1
Published: almost 6 years ago

10.1242/dmm.028910

Dynamic changes in the skeletal muscle proteome during denervation-induced atrophy
Cited by: 53
Author(s): Franziska Lang, Sriram Aravamudhan, Hendrik Nolte, Clara Türk, Soraya Hölper, Stefan Müller, Stefan Günther, Bert Blaauw, Thomas Braun, Marcus Krüger
Software Mentions: 1
Published: almost 8 years ago

10.1016/j.ebiom.2014.10.011

Inhibition of Cyclooxygenase-2 Prevents Chronic and Recurrent Cystitis
Cited by: 83
Author(s): Thomas J. Hannan, Pacita L. Roberts, Terrence E. Riehl, Sjoerd van der Post, Jana Binkley, Drew J. Schwartz, Hiroyuki Miyoshi, Matthias Mack, Reto A. Schwendener, Thomas M. Hooton, Thaddeus S. Stappenbeck, Gunnar C. Hansson, William F. Stenson, Marco Colonna, Ann E. Stapleton, Scott J. Hultgren
Software Mentions: 1
Published: about 10 years ago

10.15252/embj.201694912

Tumor matrix stiffness promotes metastatic cancer cell interaction with the endothelium
Cited by: 133
Author(s): Steven Reid, Emily Kay, Lisa J. Neilson, Anne Theres Henze, Jens Serneels, Ewan J. McGhee, Sandeep Dhayade, Colin Nixon, John B. G. Mackey, Alice Santi, Karthic Swaminathan, Dimitris Athineos, Vasileios Papalazarou, Francesca Patella, Álvaro Román-Fernández, Yasmin ElMaghloob, Juan R. Hernández-Fernaud, Ralf H. Adams, Shehab Ismail, David M. Bryant, Manuel Salmerón-Sánchez, Laura M. Machesky, Leo M. Carlin, Karen Blyth, Massimiliano Mazzone, Sara Zanivan
Software Mentions: 1
Published: over 7 years ago

10.15252/embj.201899763

Chemical genetic identification of <scp>CDKL</scp> 5 substrates reveals its role in neuronal microtubule dynamics
Cited by: 53
Author(s): Lucas L. Baltussen, Priscilla D. Negraes, Margaux Silvestre, Suzanne Claxton, Max Moeskops, Evangelos Christodoulou, Helen Flynn, Ambrosius P. Snijders, Alysson R. Muotri, Sila K Ultanir
Software Mentions: 1
Published: about 6 years ago

10.15252/embj.2020106177

HDAC6 inhibition restores TDP‐43 pathology and axonal transport defects in human motor neurons with TARDBP mutations
Cited by: 41
Author(s): Raheem Fazal, Steven Boeynaems, Ann Swijsen, Mathias De Decker, Laura Fumagalli, Matthieu Moisse, J. Vanneste, Wenting Guo, Ruben Boon, Thomas Vercruysse, Kristel Eggermont, Bart Swinnen, Jimmy Beckers, Donya Pakravan, Tijs Vandoorne, Pieter Vanden Berghe, Cathérine Verfaillie, Ludo Van Den Bosch, Philip Van Damme
Software Mentions: 1
Published: over 3 years ago

10.15252/embj.2020106188

TPL‐2 kinase induces phagosome acidification to promote macrophage killing of bacteria
Cited by: 13
Author(s): Felix Breyer, Anetta Härtlová, Teresa L. M. Thurston, Helen Flynn, Probir Chakravarty, Julia Janzen, Julien Peltier, Tiaan Heunis, Ambrosius P Snijders, Matthias Trost, Steven C. Ley
Software Mentions: 1
Published: over 3 years ago

10.15252/embj.2019101625

The Arabidopsis Cdk1/Cdk2 homolog <scp>CDKA</scp> ;1 controls chromosome axis assembly during plant meiosis
Cited by: 35
Author(s): Chao Yang, Kostika Sofroni, Erik Wijnker, Yuki Hamamura, Lena Carstens, Hirofumi Harashima, Sara C. Stolze, Daniel Vezon, Liudmila Chelysheva, Zsuzsanna Orbán-Németh, Gaëtan Pochon, Hirofumi Nakagami, Peter Schlögelhofer, Mathilde Grelon, Arp Schnittger
Software Mentions: 1
Published: about 5 years ago

10.15252/embj.201593594

The effects of proteasomal inhibition on synaptic proteostasis
Cited by: 44
Author(s): Vicky Hakim, Laurie D. Cohen, Rina Zuchman, Tamar Ziv, Noam Ziv
Software Mentions: 1
Published: about 8 years ago

10.15252/emmm.202013067

Cysteamine–bicalutamide combination therapy corrects proximal tubule phenotype in cystinosis
Cited by: 18
Author(s): Amer Jamalpoor, Charlotte Agh van Gelder, Fjodor A. Yousef Yengej, Esther A. Zaal, Sante Princiero Berlingerio, Koenraad Veys, Carla Pou Casellas, Koen Voskuil, Khaled Essa, Carola Ammerlaan, Laura Rita Rega, Reini En van der Welle, Marc R. Lilien, Maarten B. Rookmaaker, Hans Clevers, Judith Klumperman, Elena Levtchenko, Celia R. Berkers, Marianne C. Verhaar, Maarten Altelaar, Rosalinde Masereeuw, Manoe J. Janssen
Software Mentions: 1
Published: over 3 years ago

10.15252/emmm.201404461

5‐azacytidine inhibits nonsense‐mediated decay in a <scp>MYC</scp>‐dependent fashion
Cited by: 51
Author(s): Madhuri Bhuvanagiri, Joe Lewis, Kerstin Putzker, Jonas P Becker, Stefan Leicht, Jeroen Krijgsveld, Richa Batra, Brad Turnwald, Bogdan Jovanovic, Christian Hauer, Jana Sieber, Matthias W. Hentze, Andreas E. Kulozik
Software Mentions: 1
Published: about 10 years ago

10.15252/emmm.201809469

Inhibiting MARSs reduces hyperhomocysteinemia‐associated neural tube and congenital heart defects
Cited by: 18
Author(s): Xinyu Mei, Dashi Qi, Ting Zhang, Ying Zhao, Li Jin, Jun‐Li Hou, Jianhua Wang, Yan Lin, Yu Xue, Pingping Zhu, Zexian Liu, Lei Huang, Ji Nie, Shi Wu Wen, Jingyi Ma, Jianhong Ye, Richard H. Finnell, Hexige Saiyin, Hongyan Wang, Jin Zhao, Shimin Zhao, Wei Xu
Software Mentions: 1
Published: almost 5 years ago

10.15252/embr.202050446

Amyloid aggregates accumulate in melanoma metastasis modulating <scp>YAP</scp> activity
Cited by: 19
Author(s): Vittoria Matafora, Francesco Farris, Umberto Restuccia, Simone Tamburri, Giuseppe Martano, Clara Bernardelli, Ana Sofía, Federica Pisati, Francesca Casagrande, Luca Lazzari, Silvia Marsoni, Emanuela Bonoldi, Ángela Bachi
Software Mentions: 1
Published: over 4 years ago

10.15252/embr.202052196

ARHGAP45 controls naïve T‐ and B‐cell entry into lymph nodes and T‐cell progenitor thymus seeding
Cited by: 12
Author(s): Le He, Marie-Pierre Valignat, Lichen Zhang, Léna Gélard, Fanghui Zhang, Valentin Le Guen, Stéphane Audebert, Luc Camoin, Even Fossum, Bjarne Bogen, Hui Wang, Sandrine Henri, Romain Roncagalli, Olivier Théodoly, Yinming Liang, Marie Malissen, Bernard Malissen
Software Mentions: 1
Published: over 3 years ago

10.15252/embr.202050662

FAM111 protease activity undermines cellular fitness and is amplified by gain‐of‐function mutations in human disease
Cited by: 32
Author(s): Saskia Hoffmann, Satyakrishna Pentakota, Andreas Mund, Peter Haahr, Fabian Coscia, Marta Gallo, Matthias Mann, Nicholas M. I. Taylor, Niels Mailand
Software Mentions: 1
Published: over 4 years ago

10.15252/embr.201643534

Brd4‐Brd2 isoform switching coordinates pluripotent exit and Smad2‐dependent lineage specification
Cited by: 22
Author(s): Rosalía Fernández-Alonso, L. S. P. Davidson, Jens Hukelmann, Michael Zengerle, Alan R. Prescott, Angus I. Lamond, A. Ciulli, Gopal P. Sapkota, Greg M. Findlay
Software Mentions: 1
Published: over 7 years ago

10.15252/embr.202050163

USP22 controls necroptosis by regulating receptor‐interacting protein kinase 3 ubiquitination
Cited by: 41
Author(s): Jens Roedig, Lisa Kowald, Thomas Juretschke, Rebekka Karlowitz, Behnaz Ahangarian Abhari, Heiko Roedig, Simone Fulda, Petra Beli, Sjoerd J. L. van Wijk
Software Mentions: 1
Published: almost 4 years ago

10.15252/embr.201541432

A non‐canonical function of Plk4 in centriolar satellite integrity and ciliogenesis through <scp>PCM</scp> 1 phosphorylation
Cited by: 41
Author(s): Akiko Hori, Karin Barnouin, Ambrosius P. Snijders, Takashi Toda
Software Mentions: 1
Published: almost 9 years ago

10.15252/embr.201744810

<scp>SORCS</scp> 1 and <scp>SORCS</scp> 3 control energy balance and orexigenic peptide production
Cited by: 36
Author(s): Aygul Subkhangulova, Anna R. Malik, Guido Hermey, Oliver Popp, Gunnar Dittmar, Thomas Rathjen, Matthew N. Poy, Alexander Stumpf, Prateep Beed, Dietmar Schmitz, Tilman Breiderhoff, Thomas E. Willnow
Software Mentions: 1
Published: almost 7 years ago

10.17179/excli2020-1396

Roles of kininogen-1, basement membrane specific heparan sulfate proteoglycan core protein, and roundabout homolog 4 as potential urinary protein biomarkers in diabetic nephropathy.
Cited by: 3
Author(s): Piyada Na Nakorn, Supitcha Pannengpetch, Patcharee Isarankura-Na-Ayudhya, Chadinee Thippakorn, Ratana Lawung, Nuankanya Sathirapongsasuti, Chagriya Kitiyakara, Piyamitr Sritara, Prin Vathesatogkit, Chartchalerm Isarankura‐Na‐Ayudhya
Software Mentions: 1
Published: almost 5 years ago

10.1080/22221751.2019.1656549

Comprehensive analysis of the lysine acetylome in Aeromonas hydrophila reveals cross-talk between lysine acetylation and succinylation in LuxS
Cited by: 24
Author(s): Lijun Sun, Zujie Yao, Zhuang Guo, Lishan Zhang, Yuqian Wang, Ranran Mao, Yongjun Lin, Yuying Fu, Xiangmin Lin
Software Mentions: 1
Published: almost 6 years ago

10.1111/1462-2920.14620

Differential protein expression during growth on linear versus branched alkanes in the obligate marine hydrocarbon‐degrading bacterium Alcanivorax borkumensis SK2T
Cited by: 26
Author(s): Benjamin H. Gregson, Gergana Metodieva, Metodi V. Metodiev, Boyd A. McKew
Software Mentions: 1
Published: over 5 years ago

10.1111/1462-2920.14956

Protein expression in the obligate hydrocarbon‐degrading psychrophileOleispira antarcticaRB‐8 during alkane degradation and cold tolerance
Cited by: 25
Author(s): Benjamin H. Gregson, Gergana Metodieva, Metodi V. Metodiev, Peter N. Golyshin, Boyd A. McKew
Software Mentions: 1
Published: over 4 years ago

10.1186/s13072-019-0294-5

The DNA repair protein SHPRH is a nucleosome-stimulated ATPase and a nucleosome-E3 ubiquitin ligase
Cited by: 18
Author(s): Joanna Brühl, Jonathan Trautwein, Agnes Schäfer, Uwe Linne, Karim Bouazoune
Software Mentions: 1
Published: over 5 years ago

10.12688/f1000research.13863.2

Unraveling endometriosis-associated ovarian carcinomas using integrative proteomics
Cited by: 1
Author(s): Felix Leung, Marcus Q. Bernardini, Kun Liang, Ihor Batruch, Marjan Rouzbahman, Eleftherios P. Diamandis, Vathany Kulasingam
Software Mentions: 1
Published: over 6 years ago

10.12688/f1000research.16255.2

Functional proteomic profiling reveals KLK13 and TMPRSS11D as active proteases in the lower female reproductive tract
Cited by: 3
Author(s): Carla Muytjens, Yifan Yu, Eleftherios P. Diamandis
Software Mentions: 1
Published: almost 6 years ago

10.3390/foods9121852

Biomanufacturing of Tomato-Derived Nanovesicles
Cited by: 31
Author(s): Bokka Ramesh, Anna Paulina Ramos, Immacolata Fiume, Mauro Manno, Samuele Raccosta, Lilla Turiák, Simon Sugár, Giorgia Adamo, Tamás Csizmadia, Gabriella Pocsfalvi
Software Mentions: 1
Published: almost 4 years ago

10.3389/fnagi.2019.00368

Aging Disrupts the Circadian Patterns of Protein Expression in the Murine Hippocampus
Cited by: 21
Author(s): Paula Adler, Cheng‐Kang Chiang, Janice Mayne, Zhibin Ning, Xu Zhang, Bo Xu, Hai-Ying Mary Cheng, Daniel Figeys
Software Mentions: 1
Published: almost 5 years ago

10.3389/fbioe.2020.00143

Membrane Modulation of Super-Secreting “midiBacillus” Expressing the Major Staphylococcus aureus Antigen – A Mass-Spectrometry-Based Absolute Quantification Approach
Cited by: 4
Author(s): Minia Antelo-Varela, Rocío Suárez, Jürgen Bartel, Margarita Bernal-Cabas, Tim Stobernack, Thomas Sura, Jan Maarten van Dijl, Sandra Maaß, Dörte Becher
Software Mentions: 1
Published: over 4 years ago

10.3389/fbioe.2019.00092

Osteoblast-Derived Vesicle Protein Content Is Temporally Regulated During Osteogenesis: Implications for Regenerative Therapies
Cited by: 21
Author(s): Owen G. Davies, Sophie C. Cox, Ioannis Azoidis, Adam McGuinness, Megan E. Cooke, Liam M. Heaney, Edward T. Davis, Simon W. Jones, Liam M. Grover
Software Mentions: 1
Published: over 5 years ago

10.3389/fcvm.2020.00101

Comparative Platelet Releasate Proteomic Profiling of Acute Coronary Syndrome versus Stable Coronary Artery Disease
Cited by: 12
Author(s): Patricia B. Maguire, Martin Parsons, Paulina B. Szklanna, Monika Zdanytė, Patrick Münzer, Mainak Chatterjee, Kieran Wynne, Dominik Rath, Shane P. Comer, Melanie Hayden, Fionnuala Ní Áinle, Meinrad Gawaz
Software Mentions: 1
Published: over 4 years ago

10.3389/fcell.2016.00021

Induction of Macrophage Function in Human THP-1 Cells Is Associated with Rewiring of MAPK Signaling and Activation of MAP3K7 (TAK1) Protein Kinase
Cited by: 50
Author(s): Erik A. Richter, Katharina Ventz, Manuela Harms, Jörg Mostertz, Falko Hochgräfe
Software Mentions: 1
Published: over 8 years ago

10.3389/fcell.2016.00100

High-Sensitivity Mass Spectrometry for Probing Gene Translation in Single Embryonic Cells in the Early Frog (Xenopus) Embryo
Cited by: 17
Author(s): Camille Lombard‐Banek, Sally A. Moody, Péter Nemes
Software Mentions: 1
Published: about 8 years ago

10.3389/fcell.2020.00049

Secretome Analysis Performed During in vitro Cardiac Differentiation: Discovering the Cardiac Microenvironment
Cited by: 11
Author(s): Anny Waloski Robert, Isabela Tiemy Pereira, Bruno Dallagiovanna, Marco Augusto Stimamiglio
Software Mentions: 1
Published: almost 5 years ago

10.3389/fcell.2020.545934

Proteome-Wide Alterations of Asymmetric Arginine Dimethylation Associated With Pancreatic Ductal Adenocarcinoma Pathogenesis
Cited by: 2
Author(s): Meijin Wei, Changlian Tan, Zhouqin Tang, Yingying Lian, Ying Huang, Yi Chen, Congwei Chen, Wen Zhou, Tao Cai, Jiliang Hu
Software Mentions: 1
Published: almost 4 years ago

10.3389/fcell.2021.634371

EGF Induces Migration Independent of EMT or Invasion in A549 Lung Adenocarcinoma Cells
Cited by: 9
Author(s): Karin Schelch, Lisa Vogel, Anja Schneller, Jelena Brankovic, Thomas Mohr, Rupert L. Mayer, Astrid Slany, Christopher Gerner, Michael Grusch
Software Mentions: 1
Published: over 3 years ago

10.3389/fcell.2021.748860

Domain Organization of the UBX Domain Containing Protein 9 and Analysis of Its Interactions With the Homohexameric AAA + ATPase p97 (Valosin-Containing Protein)
Cited by: 3
Author(s): Jana Riehl, Ramesh Rijal, Leonie Nitz, Christoph S. Clemen, Andreas Hofmann, Ludwig M. Eichinger
Software Mentions: 1
Published: about 3 years ago

10.3389/fcell.2020.589761

GFOGER Peptide Modifies the Protein Content of Extracellular Vesicles and Inhibits Vascular Calcification
Cited by: 8
Author(s): Ali Mansour, Walaa Darwiche, Linda Yaker, Sophie Da Nascimento, Cathy Gomila, Claire Rossi, Vincent Jung, Pascal Sonnet, Saı̈d Kamel, Ida Chiara Guerrera, Agnès Boullier, Jérôme Ausseil
Software Mentions: 1
Published: almost 4 years ago

10.3389/fcell.2020.00508

Proteomic Analysis Reveals a Mitochondrial Remodeling of βTC3 Cells in Response to Nanotopography
Cited by: 8
Author(s): Elisa Maffioli, A. Galli, Simona Nonnis, A. Marku, Armando Negri, Claudio Piazzoni, Paolo Milani, Cristina Lenardi, Carla Perego, Gioacchino Tedeschi
Software Mentions: 1
Published: over 4 years ago

10.3389/fcell.2021.722427

An Adipose-Derived Injectable Sustained-Release Collagen Scaffold of Adipokines Prepared Through a Fast Mechanical Processing Technique for Preventing Skin Photoaging in Mice
Cited by: 4
Author(s): Xiaoxuan Jin, Yuchen Zhang, Xiangdong Zhang, Yibao Li, Mimi Xu, Kaiyang Liu, Jiangjiang Ru, Chijuan Ma, Yao Yao, Yunfan He, Jianhua Gao
Software Mentions: 1
Published: about 3 years ago

10.3389/fcell.2021.639162

Depletion of Numb and Numblike in Murine Lung Epithelial Cells Ameliorates Bleomycin-Induced Lung Fibrosis by Inhibiting the β-Catenin Signaling Pathway
Cited by: 3
Author(s): Alessandro Ianni, Michael Hofmann, Poonam Kumari, Shahriar Tarighi, Hamza M. Al-Tamari, André Görgens, Bernd Giebel, Hendrik Nolte, Marcus Krüger, Isabelle Salwig, Soni Savai Pullamsetti, Andreas Günther, André Schneider, Thomas Braun
Software Mentions: 1
Published: over 3 years ago

10.3389/fcell.2020.00689

Selective Histone Deacetylase 6 Inhibitors Restore Cone Photoreceptor Vision or Outer Segment Morphology in Zebrafish and Mouse Models of Retinal Blindness
Cited by: 22
Author(s): Husvinee Sundaramurthi, Sarah L. Roche, Guinevere L. Grice, Ailís Moran, Eugene T Dillion, Giuseppe Campiani, James A. Nathan, Breandán N. Kennedy
Software Mentions: 1
Published: about 4 years ago

10.3389/fcimb.2020.00432

A TLR2-Activating Fraction From Mycobacterium abscessus Rough Variant Demonstrates Vaccine and Diagnostic Potential
Cited by: 9
Author(s): Vincent Le Moigne, Anne-Laure Roux, Aude Jobart-Malfait, Landry Blanc, Karima Chaoui, Odile Burlet‐Schiltz, Jean‐Louis Gaillard, Stéphane Canaan, Jérôme Nigou, Jean-Louis Herrmann
Software Mentions: 1
Published: about 4 years ago

10.3389/fcimb.2017.00288

Salivary Tick Cystatin OmC2 Targets Lysosomal Cathepsins S and C in Human Dendritic Cells
Cited by: 17
Author(s): Tina Zavašnik–Bergant, Robert Vidmar, Andreja Sekirnik, Marko Fonović, Jiřı́ Salát, Lenka Grunclová, Petr Kopáček, Boris Turk
Software Mentions: 1
Published: over 7 years ago

10.3389/fcimb.2021.637604

Sickle Cell Trait Modulates the Proteome and Phosphoproteome of Plasmodium falciparum-Infected Erythrocytes
Cited by: 3
Author(s): Margaux Chauvet, Cérina Chhuon, Joanna Lipecka, Sébastien Dechavanne, Célia Dechavanne, Murielle Lohezic, Margherita Ortalli, Damien Pineau, Jean-Antoine Ribeil, Sandra Manceau, Caroline Le Van Kim, Adrian J. F. Luty, Florence Migot-Nabias, Slim Azouzi, Ida Chiara Guerrera, Anaïs Merckx
Software Mentions: 1
Published: over 3 years ago

10.3389/fcimb.2018.00321

Staphylococcal Enterotoxins Dose-Dependently Modulate the Generation of Myeloid-Derived Suppressor Cells
Cited by: 17
Author(s): Hartmut Stoll, Michael C. Ost, Anurag Singh, Roman Mehling, Davide Neri, Iris Schäfer, Ana Velić, Boris Maček, Dorothee Kretschmer, Christopher Weidenmaier, Andreas Hector, Rupert Handgretinger, Friedrich Götz, Andreas Peschel, Dominik Hartl, Nikolaus Rieber
Software Mentions: 1
Published: about 6 years ago

10.3389/fcimb.2020.00417

Peptidylarginine Deiminase Inhibition Abolishes the Production of Large Extracellular Vesicles From Giardia intestinalis, Affecting Host-Pathogen Interactions by Hindering Adhesion to Host Cells
Cited by: 37
Author(s): Bruno Gavinho, Bruna Sabatke, Veronica Feijoli, Izadora Volpato Rossi, Janaína Macedo da Silva, Ingrid Evans-Osses, Giuseppe Palmisano, Sigrun Lange, Marcel I. Ramirez
Software Mentions: 1
Published: about 4 years ago

10.3389/fncel.2016.00267

Scale Invariant Disordered Nanotopography Promotes Hippocampal Neuron Development and Maturation with Involvement of Mechanotransductive Pathways
Cited by: 32
Author(s): Carsten Schulte, Maddalena Ripamonti, Elisa Maffioli, Martino Alfredo Cappelluti, Simona Nonnis, Luca Puricelli, Jacopo Lamanna, Claudio Piazzoni, Alessandro Podestà, Cristina Lenardi, Gioacchino Tedeschi, Antonio Malgaroli, Paolo Milani
Software Mentions: 1
Published: about 8 years ago

10.3389/fncel.2017.00417

Proteomic Dissection of Nanotopography-Sensitive Mechanotransductive Signaling Hubs that Foster Neuronal Differentiation in PC12 Cells
Cited by: 26
Author(s): Elisa Maffioli, Carsten Schulte, Simona Nonnis, Francesca Grassi Scalvini, Claudio Piazzoni, Cristina Lenardi, Armando Negri, Paolo Milani, Gioacchino Tedeschi
Software Mentions: 1
Published: almost 7 years ago

10.3389/fncel.2019.00064

Zika Virus Impairs Neurogenesis and Synaptogenesis Pathways in Human Neural Stem Cells and Neurons
Cited by: 47
Author(s): Lívia Rosa-Fernandes, Fernanda R. Cugola, Fabiele Baldino Russo, Rebeca Kawahara, Caio César de Melo Freire, Paulo Emílio Corrêa Leite, Ana Carolina Bassi Stern, Cláudia Blanes Angeli, Danielle Bruna Leal Oliveira, Stella Rezende Melo, Paolo Marinho de Andrade Zanotto, Edison Luiz Durigon, Martin R. Larsen, Patrícia Cristina Baleeiro Beltrão-Braga, Giuseppe Palmisano
Software Mentions: 1
Published: over 5 years ago

10.3389/fncel.2017.00411

Proteomic and Metabolomic Analyses of Vanishing White Matter Mouse Astrocytes Reveal Deregulation of ER Functions
Cited by: 12
Author(s): Lisanne E. Wisse, Renske Penning, Esther A. Zaal, Carola G.M. van Berkel, Timo J. ter Braak, Emiel Polder, Justin W. Kenney, Christopher G. Proud, Celia R. Berkers, Maarten Altelaar, Dave Speijer, Marjo S. van der Knaap, Truus E.M. Abbink
Software Mentions: 1
Published: almost 7 years ago

10.3389/fendo.2021.568197

Proteomic and Structural Manifestations of Cardiomyopathy in Rat Models of Obesity and Weight Loss
Cited by: 7
Author(s): Arkadiusz Liśkiewicz, Łukasz Marczak, Katarzyna Bogus, Daniela Liśkiewicz, Marta Przybyła, Joanna Lewin–Kowalik
Software Mentions: 1
Published: over 3 years ago

10.3389/fgene.2012.00242

On programmed ribosomal frameshifting: the alternative proteomes
Cited by: 56
Author(s): Robin Ketteler
Software Mentions: 1
Published: almost 13 years ago

10.3389/fimmu.2017.01926

Expression of Siglec-E Alters the Proteome of Lipopolysaccharide (LPS)-Activated Macrophages but Does Not Affect LPS-Driven Cytokine Production or Toll-Like Receptor 4 Endocytosis
Cited by: 21
Author(s): Manjula Nagala, Emma McKenzie, Hannah Richards, Ritu Sharma, Sarah Thomson, Pietro Mastroeni, Paul R. Crocker
Software Mentions: 1
Published: almost 7 years ago

10.3389/fimmu.2017.01367

‘Hotspots’ of Antigen Presentation Revealed by Human Leukocyte Antigen Ligandomics for Neoantigen Prioritization
Cited by: 72
Author(s): Markus Müller, David Gfeller, George Coukos, Michal Bassani-Sternberg
Software Mentions: 1
Published: about 7 years ago

10.3389/fimmu.2020.00887

Airway Exosomes Released During Influenza Virus Infection Serve as a Key Component of the Antiviral Innate Immune Response
Cited by: 29
Author(s): James G. Bedford, Giuseppe Infusini, Laura F. Dagley, Fernando Villalón-Letelier, Ming Z. M. Zheng, Vicki Bennett-Wood, Patrick C. Reading, Linda M. Wakim
Software Mentions: 1
Published: over 4 years ago

10.3389/fimmu.2018.01937

IgG-Independent Co-aggregation of FcεRI and FcγRIIB Results in LYN- and SHIP1-Dependent Tyrosine Phosphorylation of FcγRIIB in Murine Bone Marrow-Derived Mast Cells
Cited by: 10
Author(s): Mathias Gast, Christian Preisinger, Falk Nimmerjahn, Michael Huber
Software Mentions: 1
Published: about 6 years ago

10.3389/fimmu.2019.00226

Light-Controlled Affinity Purification of Protein Complexes Exemplified by the Resting ZAP70 Interactome
Cited by: 11
Author(s): Maximilian Hörner, Julian Eble, O. Sascha Yousefi, Jennifer Schwarz, Bettina Warscheid, Wilfried Weber, Wolfgang W. A. Schamel
Software Mentions: 1
Published: over 5 years ago

10.3389/fimmu.2018.00620

Cutting an NKG2D Ligand Short: Cellular Processing of the Peculiar Human NKG2D Ligand ULBP4
Cited by: 16
Author(s): Tobias Zöller, Mareike Wittenbrink, Meike Hoffmeister, Alexander Steinle
Software Mentions: 1
Published: over 6 years ago

10.3389/fimmu.2019.02921

Molecular Landscape of Anti-Drug Antibodies Reveals the Mechanism of the Immune Response Following Treatment With TNFα Antagonists
Cited by: 37
Author(s): Anna Vaisman-Mentesh, Shai Rosenstein, Miri Yavzori, Yael Dror, Ella Fudim, Bella Ungar, Uri Kopylov, Orit Picard, Aya Kigel, Shomron Ben–Horin, Itai Benhar, Yariv Wine
Software Mentions: 1
Published: almost 5 years ago

10.3389/fimmu.2020.596103

Binding of Macrophage Receptor MARCO, LDL, and LDLR to Disease-Associated Crystalline Structures
Cited by: 9
Author(s): Anika Alberts, Annika Klingberg, Leonie Hoffmeister, Anne Kathrin Wessig, Korbinian Brand, Andreas Pich, Konstantin Neumann
Software Mentions: 1
Published: almost 4 years ago

10.3389/fimmu.2019.01648

Endoplasmic Reticulum Associated Aminopeptidase 2 (ERAP2) Is Released in the Secretome of Activated MDMs and Reduces in vitro HIV-1 Infection
Cited by: 21
Author(s): Irma Saulle, Salomè V. Ibba, Enrica Torretta, Cecilia Vittori, Claudio Fenizia, Federica Piancone, Davide Minisci, Elisa Lori, Daria Trabattoni, Cecilia Gelfi, Mario Clerici, Mara Biasin
Software Mentions: 1
Published: over 5 years ago

10.3389/fimmu.2018.01142

Foot-and-Mouth Disease Virus Counteracts on Internal Ribosome Entry Site Suppression by G3BP1 and Inhibits G3BP1-Mediated Stress Granule Assembly via Post-Translational Mechanisms
Cited by: 35
Author(s): Xu Ye, Ting Pan, Dan Wang, Liurong Fang, Jun Ma, Xinyu Zhu, Yanbin Shi, Keshan Zhang, Haixue Zheng, Huanchun Chen, Kui Li, Shaobo Xiao
Software Mentions: 1
Published: over 6 years ago

10.3389/fimmu.2020.01686

Antimicrobial Peptide Induced-Stress Renders Staphylococcus aureus Susceptible to Toxic Nucleoside Analogs
Cited by: 6
Author(s): Alexandro Rodríguez‐Rojas, Arpita Nath, Baydaa El Shazely, Greta Santi, Joshua Jay Kim, Christoph Weise, Benno Kuropka, Jens Rolff
Software Mentions: 1
Published: about 4 years ago

10.3389/fimmu.2019.01832

A Phase Ib Study of the Combination of Personalized Autologous Dendritic Cell Vaccine, Aspirin, and Standard of Care Adjuvant Chemotherapy Followed by Nivolumab for Resected Pancreatic Adenocarcinoma—A Proof of Antigen Discovery Feasibility in Three Patients
Cited by: 51
Author(s): Michal Bassani-Sternberg, Antonia Digklia, Florian Huber, Dorothea Wagner, Christine Sempoux, Brian J. Stevenson, Anne‐Christine Thierry, Justine Michaux, HuiSong Pak, Julien Racle, Caroline Boudousquié, Klara Balint, George Coukos, David Gfeller, Silvia Martin Lluesma, Alexandre Harari, Nicolas Demartines, Lana E. Kandalaft
Software Mentions: 1
Published: over 5 years ago

10.3389/fimmu.2020.604075

Tolerogenic Effect Elicited by Protein Fraction Derived From Different Formulas for Dietary Treatment of Cow’s Milk Allergy in Human Cells
Cited by: 18
Author(s): Lorella Paparo, Gianluca Picariello, Cristina Bruno, Laura Pisapia, Valentina Canale, Antonietta Sarracino, Rita Nocerino, Laura R. Carucci, Linda Cosenza, Tommaso Cozzolino, Roberto Berni Canani
Software Mentions: 1
Published: almost 4 years ago

10.3389/fimmu.2021.711517

Duck Tembusu Virus Infection Promotes the Expression of Duck Interferon-Induced Protein 35 to Counteract RIG-I Antiviral Signaling in Duck Embryo Fibroblasts
Cited by: 7
Author(s): Peng Zhou, Lei Ma, Zaixiao Rao, Yaqian Li, Huijun Zheng, Qigai He, Rui Luo
Software Mentions: 1
Published: over 3 years ago

10.3389/fimmu.2020.00694

Sex as a Determinant of Responses to a Coronary Artery Disease Self-Antigen Identified by Immune-Peptidomics
Cited by: 3
Author(s): Wai Man Lio, Bojan Cercek, Juliana Yano, Wei Yang, Jonathan Ghermezi, Xiaoning Zhao, Jianchang Zhou, Bo Zhou, Michael R. Freeman, Kuang‐Yuh Chyu, Prediman K. Shah, Paul C. Dimayuga
Software Mentions: 1
Published: over 4 years ago

Projects: cran: Andromeda

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