cran: Andromeda | Projects | Ecosyste.ms: Papers

10.3389/fnut.2020.00162

Degradation of Proteins From Colostrum and Mature Milk From Chinese Mothers Using an in vitro Infant Digestion Model
Cited by: 5
Author(s): M. Elwakiel, Sjef Boeren, Wendan Wang, Henk A. Schols, Kasper Hettinga
Software Mentions: 1
Published: about 6 years ago

10.3389/fnut.2021.680683

A High-Throughput Comparative Proteomics of Milk Fat Globule Membrane Reveals Breed and Lactation Stages Specific Variation in Protein Abundance and Functional Differences Between Milk of Saanen Dairy Goat and Holstein Bovine
Cited by: 4
Author(s): Wei Jia, Rong Zhang, Zhiliang Zhu, Lin Shi
Software Mentions: 1
Published: over 5 years ago

10.3389/fnut.2019.00025

Excretion of Dietary Cow's Milk Derived Peptides Into Breast Milk
Cited by: 20
Author(s): Gianluca Picariello, Maristella De Cicco, Rita Nocerino, Lorella Paparo, Gianfranco Mamone, Francesco Addeo, Roberto Berni Canani
Software Mentions: 1
Published: over 7 years ago

10.3389/fonc.2021.656687

Lovastatin Inhibits EMT and Metastasis of Triple-Negative Breast Cancer Stem Cells Through Dysregulation of Cytoskeleton-Associated Proteins
Cited by: 14
Author(s): Zheng Chen, Shichao Yan, Lu Lu, Hui Yao, Guangchun He, Sisi Chen, Ying Liu, Xiaojun Peng, Zhongyi Cheng, Mei Wu, Qiuting Zhang, Guifei Li, Shujun Fu, Xiyun Deng
Software Mentions: 1
Published: over 5 years ago

10.3389/fonc.2015.00087

Cancer-Associated Fibroblasts from Lung Tumors Maintain Their Immunosuppressive Abilities after High-Dose Irradiation
Cited by: 42
Author(s): Laia Gorchs, Turid Hellevik, Jack‐Ansgar Bruun, Ketil-Andre Camilio, Samer Al-Saad, Tor B. Stuge, Iñigo Martínez-Zubiaurre
Software Mentions: 1
Published: over 11 years ago

10.3389/fonc.2020.624573

Beyond Andromeda: Improving Therapy for Light Chain Amyloidosis
Cited by: 5
Author(s): Gregory P. Kaufman, Claudio Cerchione
Software Mentions: 1
Published: over 5 years ago

10.3389/fonc.2020.523989

Proteomic Analysis of Pre-Invasive Serous Lesions of the Endometrium and Fallopian Tube Reveals Their Metastatic Potential
Cited by: 4
Author(s): Mitchell Acland, Georgia Arentz, Max Mussared, Fergus Whitehead, Peter Hoffmann, Manuela Klingler‐Hoffmann, Martin K. Oehler
Software Mentions: 1
Published: almost 6 years ago

10.7554/eLife.35330

Normal mitochondrial function in Saccharomyces cerevisiae has become dependent on inefficient splicing
Cited by: 18
Author(s): Marina Rudan, Peter Bou Dib, Marina Musa, Matea Kanunnikau, Sandra Sobočanec, David Rueda, Tobias Warnecke, Anita Kriško
Software Mentions: 1
Published: over 8 years ago

10.7554/eLife.27402

Characterisation of the biflavonoid hinokiflavone as a pre-mRNA splicing modulator that inhibits SENP
Cited by: 27
Author(s): Andrea Pawellek, Ursula Ryder, Triin Tammsalu, Lewis J King, Helmi Kreinin, Tony Ly, Ronald T. Hay, Richard C. Hartley, Angus I. Lamond
Software Mentions: 1
Published: about 9 years ago

10.7554/eLife.69310

Aorta smooth muscle-on-a-chip reveals impaired mitochondrial dynamics as a therapeutic target for aortic aneurysm in bicuspid aortic valve disease
Cited by: 20
Author(s): Mieradilijiang Abudupataer, Shichao Zhu, Shiqiang Yan, Kehua Xu, Jingjing Zhang, Sushan Luo, Wenrui Ma, Md. Fazle Alam, Yuyi Tang, Hui Huang, Nan Chen, Li Wang, Guoquan Yan, Jun Li, Hao Lai, Chunsheng Wang, Kai Zhu, Weijia Zhang
Software Mentions: 1
Published: about 5 years ago

10.7554/eLife.46740

Misfolded GPI-anchored proteins are escorted through the secretory pathway by ER-derived factors
Cited by: 49
Author(s): Eszter Zavodszky, Ramanujan S. Hegde
Software Mentions: 1
Published: over 7 years ago

10.7554/eLife.11466

A deep proteomics perspective on CRM1-mediated nuclear export and nucleocytoplasmic partitioning
Cited by: 161
Author(s): Koray Kırlı, Samir Karaca, Heinz-Jürgen Dehne, Matthias Samwer, Kuan‐Ting Pan, Christof Lenz, Henning Urlaub, Dirk Görlich
Software Mentions: 1
Published: almost 11 years ago

10.7554/eLife.63868

Exocyst-mediated membrane trafficking of the lissencephaly-associated ECM receptor dystroglycan is required for proper brain compartmentalization
Cited by: 6
Author(s): Andriy S. Yatsenko, Mariya M. Kucherenko, Yuanbin Xie, Henning Urlaub, Halyna R. Shcherbata
Software Mentions: 1
Published: over 5 years ago

10.7554/eLife.36530

Efficient analysis of mammalian polysomes in cells and tissues using Ribo Mega-SEC
Cited by: 37
Author(s): Harunori Yoshikawa, Mark Larance, Dylan Harney, Ramasubramanian Sundaramoorthy, Tony Ly, Tom Owen-Hughes, Angus I. Lamond
Software Mentions: 1
Published: about 8 years ago

10.7554/eLife.24994

The genomic landscape of human cellular circadian variation points to a novel role for the signalosome
Cited by: 9
Author(s): Ludmila Gaspar, Cédric Howald, Konstantin Popadin, Bert Maier, Daniel Mauvoisin, Ermanno Moriggi, María Gutiérrez‐Arcelus, Emilie Falconnet, Christelle Borel, Dieter Kunz, Achim Kramer, Frédéric Gachon, Emmanouil T. Dermitzakis, Stylianos E. Antonarakis, Steven A. Brown
Software Mentions: 1
Published: about 9 years ago

10.7554/eLife.37798

Comment on ‘YcgC represents a new protein deacetylase family in prokaryotes’
Cited by: 8
Author(s): Magdalena Kremer, Nora Kuhlmann, Marius Lechner, Linda Baldus, Michael Lammers
Software Mentions: 1
Published: over 8 years ago

10.7554/eLife.37623

Temporal profiling of redox-dependent heterogeneity in single cells
Cited by: 23
Author(s): Meytal Radzinski, Rosi Fassler, Ohad Yogev, William Breuer, Nadav Shai, Jenia Gutin, Sidra Ilyas, Yifat Geffen, Sabina Tsytkin-Kirschenzweig, Yaakov Nahmias, Tommer Ravid, Nir Friedman, Maya Schuldiner, Dana Reichmann
Software Mentions: 1
Published: over 8 years ago

10.7554/eLife.06848

ISG15 counteracts Listeria monocytogenes infection
Cited by: 82
Author(s): Lilliana Radoshevich, Francis Impens, David Ribet, J.J. Quereda, To Nam Tham, Marie‐Anne Nahori, Hélène Bierne, Olivier Dussurget, Javier Pizarro‐Cerdá, Klaus–Peter Knobeloch, Pascale Cossart
Software Mentions: 1
Published: about 11 years ago

10.7554/eLife.15460

Phosphorylation acts positively and negatively to regulate MRTF-A subcellular localisation and activity
Cited by: 66
Author(s): Richard Panayiotou, Francesc Miralles, Rafał Pawłowski, Jessica Diring, Helen Flynn, Mark Skehel, Richard Treisman
Software Mentions: 1
Published: over 10 years ago

10.7554/eLife.08153

Paradoxical resistance of multiple myeloma to proteasome inhibitors by decreased levels of 19S proteasomal subunits
Cited by: 80
Author(s): Diego Acosta‐Alvear, Min Y. Cho, Thomas Wild, Tonia J. Buchholz, Andrew D. Lerner, Olga Šimáková, Jamie Hahn, Neha Korde, Ola Landgren, Irina Marić, Chunaram Choudhary, Peter Walter, Jonathan S. Weissman, Martin Kampmann
Software Mentions: 1
Published: about 11 years ago

10.7554/eLife.25555

Full length RTN3 regulates turnover of tubular endoplasmic reticulum via selective autophagy
Cited by: 280
Author(s): Paolo Grumati, Giulio Morozzi, Soraya Hölper, Muriel Mari, Marie Lena I.E. Harwardt, Riqiang Yan, Stefan Müller, Fulvio Reggiori, Mike Heilemann, Ivan Đikić
Software Mentions: 1
Published: over 9 years ago

10.7554/eLife.62470

Identification of host proteins differentially associated with HIV-1 RNA splice variants
Cited by: 14
Author(s): Rachel A. Knoener, Edward L. Evans, Jordan T. Becker, Mark Scalf, Bayleigh E. Benner, Nathan M. Sherer, Lloyd M. Smith
Software Mentions: 1
Published: over 5 years ago

10.7554/eLife.56590

Parkin contributes to synaptic vesicle autophagy in Bassoon-deficient mice
Cited by: 39
Author(s): Sheila Hoffmann-Conaway, Marisa M Brockmann, Katharina Schneider, Anil Annamneedi, Kazi Atikur Rahman, Christine Bruns, Kathrin Textoris-Taube, Thorsten Trimbuch, Karl‐Heinz Smalla, Christian Rosenmund, Eckart D. Gundelfinger, Craig C. Garner, Carolina Montenegro-Venegas
Software Mentions: 1
Published: over 6 years ago

10.7554/eLife.36826

BHLHE40, a third transcription factor required for insulin induction of SREBP-1c mRNA in rodent liver
Cited by: 17
Author(s): Jing Tian, Jiaxi Wu, Xiang Chen, Tong Guo, Zhijian J. Chen, Joseph L. Goldstein, Michael S. Brown
Software Mentions: 1
Published: over 8 years ago

10.7554/eLife.47498

Increased expression of heme-binding protein 1 early in Alzheimer's disease is linked to neurotoxicity
Cited by: 21
Author(s): Oleksandr Yagensky, Mahdokht Kohansal-Nodehi, Saravanan Gunaseelan, Tamara Rabe, Saima Zafar, Inga Zerr, Wolfgang Härtig, Henning Urlaub, John Jia En Chua
Software Mentions: 1
Published: about 7 years ago

10.7554/eLife.27574

Proteomic analysis of cell cycle progression in asynchronous cultures, including mitotic subphases, using PRIMMUS
Cited by: 50
Author(s): Tony Ly, Arlene Whigham, Rosemary G. Clarke, Alejandro J Brenes-Murillo, Brett Estes, Diana Madhessian, Emma Lundberg, Patricia Wadsworth, Angus I. Lamond
Software Mentions: 1
Published: almost 9 years ago

10.18632/oncotarget.19953

Stromal cyclin D1 promotes heterotypic immune signaling and breast cancer growth
Cited by: 31
Author(s): Timothy G. Pestell, Xuanmao Jiao, Mrityunjay Kumar, Amy R. Peck, Marco di Prisco, Shengqiong Deng, Zhiping Li, Adam Ertel, Matthew C. Casimiro, Xiaoming Ju, Agnese Di Rocco, Gabriele Di Sante, Sanjay Katiyar, Alison B. Shupp, Michael P. Lisanti, Pooja Jain, Kongming Wu, Hallgeir Rui, D. Craig Hooper, Zuoren Yu, Aaron R. Goldman, David W. Speicher, Lisa D. Laury‐Kleintop, Richard G. Pestell
Software Mentions: 1
Published: about 9 years ago

10.18632/oncotarget.21937

Proteogenomic characterization and integrative analysis of glioblastoma multiforme
Cited by: 17
Author(s): Ying Chun Song, Gai Xia Lu, Hong Wei Zhang, Xiao Ming Zhong, Xian Ling Cong, Shao Bo Xue, Rui Kong, Dan Li, Zheng Chang, Xiao Feng Wang, Yun Jie Zhang, Ryan Sun, Li Chai, Ru Ting Xie, Ming Cai, Ming Sun, Wenting Mao, Hui Yang, Yun Shao, Su Yun Fan, Ting Wu, Qing Xia, Zhong Wei Lv, David A. Fu, Yu Shui
Software Mentions: 1
Published: almost 9 years ago

10.18632/oncotarget.21663

Reprogramming of leukemic cell metabolism through the naphthoquinonic compound Quambalarine B
Cited by: 6
Author(s): Karel Vališ, Valéria Grobárová, Lucie Hernychová, Martina Bugáňová, Daniel Kavan, Martin Kalous, Jiří Černý, Eva Stodůlková, Marek Kuzma, Miroslav Flieger, Jan Černý, Petr Novák
Software Mentions: 1
Published: almost 9 years ago

10.18632/oncotarget.24366

Innovative methodology for the identification of soluble biomarkers in fresh tissues
Cited by: 11
Author(s): Brunella Costanza, Andrei Turtoï, Akeila Bellahcène, Touko Hirano, Olivier Peulen, Arnaud Blomme, Vincent Hennequière, E Mutijima, Jacques Boniver, Marie‐Alice Meuwis, Claire Josse, Benjamin Koopmansch, Karin Segers, Takehiko Yokobori, Karim Fahmy, Marc Thiry, Carla Coimbra, Nancy Garbacki, Alain Colige, Dominique Baiwir, Vincent Bours, Édouard Louis, Olivier Detry, Philippe Delvenne, Masahiko Nishiyama, Vincent Castronovo
Software Mentions: 1
Published: over 8 years ago

10.18632/oncotarget.24634

Transcriptome and proteome profiling reveals stress-induced expression signatures of imiquimod-treated Tasmanian devil facial tumor disease (DFTD) cells
Cited by: 14
Author(s): Amanda L. Patchett, Richard Wilson, Jac Charlesworth, Lynn M. Corcoran, Anthony T. Papenfuss, A. Bruce Lyons, Gregory M. Woods, Cesar Tovar
Software Mentions: 1
Published: over 8 years ago

10.18632/oncotarget.25946

Approaches to the discovery of non-invasive urinary biomarkers of prostate cancer
Cited by: 18
Author(s): Andrej Jedinak, Kevin R. Loughlin, Marsha A. Moses
Software Mentions: 1
Published: about 8 years ago

10.18632/oncotarget.26005

Distinct urinary glycoprotein signatures in prostate cancer patients
Cited by: 33
Author(s): Rebeca Kawahara, Fabio Ortega, Lívia Rosa-Fernandes, Vanessa Ribeiro Guimarães, Daniel Quina, Willian Nahas, Veit Schwämmle, Miguel Srougi, Kátia R. M. Leite, Morten Thaysen‐Andersen, Martin R. Larsen, Giuseppe Palmisano
Software Mentions: 1
Published: about 8 years ago

10.18632/oncotarget.26342

Tissue proteomics outlines AGR2 AND LOX5 as markers for biochemical recurrence of prostate cancer
Cited by: 8
Author(s): Giovanny Rodrı́guez-Blanco, Lona Zeneyedpour, Diederick Duijvesz, A. Marije Hoogland, Esther I. Verhoef, Charlotte F. Kweldam, Peter C. Burgers, Peter Sillevis Smitt, Chris H. Bangma, Guido Jenster, Geert J.L.H. van Leenders, Lennard J. M. Dekker, Theo M. Luider
Software Mentions: 1
Published: almost 8 years ago

10.18632/oncotarget.27267

Targeting the non-canonical roles of PCNA modifies and increases the response to targeted anti-cancer therapy
Cited by: 14
Author(s): Caroline Krogh Søgaard, Anala Nepal, Vesna Petrović, Animesh Sharma, Nina‐Beate Liabakk, Tonje S. Steigedal, Marit Otterlei
Software Mentions: 1
Published: almost 7 years ago

10.18632/oncotarget.27491

Prolyl 4-hydroxylase alpha 1 protein expression risk-stratifies early stage colorectal cancer
Cited by: 4
Author(s): Atsushi Tanaka, Yihua Zhou, Jinru Shia, Fiona Ginty, Masakata Ogawa, David S. Klimstra, Ronald C. Hendrickson, Julia Y. Wang, Michael H. A. Roehrl
Software Mentions: 1
Published: over 6 years ago

10.3390/jpm11090925

Differential Expression of Estrogen-Responsive Genes in Women with Psoriasis
Cited by: 4
Author(s): В. В. Соболев, А. Г. Соболева, Е. В. Денисова, M. Denieva, E. V. Dvoryankova, E. A. Suleymanov, О. В. Жукова, Н. Н. Потекаев, I. M. Korsunskaya, Alexandre Mezentsev
Software Mentions: 1
Published: about 5 years ago

10.1113/JP273550

Dampened activity of ryanodine receptor channels in mutant skeletal muscle lacking TRIC-A
Cited by: 14
Author(s): Sam El-Ajouz, Elisa Venturi, Katja Witschas, Matthew Beech, Abigail D. Wilson, Chris Lindsay, David Eberhardt, Fiona O’Brien, Tsunaki Iida, Miyuki Nishi, Hiroshi Takeshima, Rebecca Sitsapesan
Software Mentions: 1
Published: over 9 years ago

10.1111/jpi.12713

Mass‐spectrometry analysis of the human pineal proteome during night and day and in autism
Cited by: 3
Author(s): Guillaume Dumas, Hany Goubran‐Botros, Mariette Matondo, Cécile Pagan, Cyril Boulègue, Thibault Chaze, Julia Chamot‐Rooke, Erik Maronde, Thomas Bourgeron
Software Mentions: 1
Published: over 5 years ago

10.1016/j.jprot.2017.08.015

Quantitative phosphoproteomic analysis of acquired cancer drug resistance to pazopanib and dasatinib
Cited by: 27
Author(s): Simon Vyse, Frank McCarthy, Malgorzata Broncel, Angela Paul, Jocelyn P. Wong, Amandeep Bhamra, Paul H. Huang
Software Mentions: 1
Published: almost 9 years ago

10.1016/j.jprot.2020.103925

Plasmodium berghei LAPs form an extended protein complex that facilitates crystalloid targeting and biogenesis
Cited by: 8
Author(s): Annie Z. Tremp, Sadia Saeed, Vikram Sharma, Edwin Lasonder, Johannes T. Dessens
Software Mentions: 1
Published: about 6 years ago

10.1098/rsob.170076

Mitotic post-translational modifications of histones promote chromatin compaction in vitro
Cited by: 51
Author(s): Alisa Zhiteneva, Juán José Bonfiglio, А. А. Макаров, Thomas Colby, Paola Vagnarelli, Eric C. Schirmer, Ivan Matić, William C. Earnshaw
Software Mentions: 1
Published: about 9 years ago

10.1098/rsob.200405

A TOR (target of rapamycin) and nutritional phosphoproteome of fission yeast reveals novel targets in networks conserved in humans
Cited by: 3
Author(s): Lenka Hálová, David Cobley, Mirita Franz‐Wachtel, Tingting Wang, Kaitlin R. Morrison, Karsten Krug, Nicolas C. Nalpas, Boris Maček, Iain Hagan, Sean J. Humphrey, Janni Petersen
Software Mentions: 1
Published: over 5 years ago

10.1016/j.yjsbx.2018.100002

3D mapping of native extracellular matrix reveals cellular responses to the microenvironment
Cited by: 13
Author(s): Zipora Lansky, Yael Mutsafi, Lothar Houben, Tal Ilani, Gad Armony, Sharon G. Wolf, Deborah Fass
Software Mentions: 1
Published: almost 8 years ago

10.1002/term.3081

Proteomic profiling of striatal tissue of a rat model of Parkinson's disease after implantation of collagen‐encapsulated human umbilical cord mesenchymal stem cells
Cited by: 2
Author(s): Anna Santaella, Hans Wessels, Purva Kulkarni, Jolein Gloerich, H. Bea Kuiperij, Bastiaan R. Bloem, Alain J. van Gool, Sílvia Cabré, Verónica Alamilla, Marcel M. Verbeek
Software Mentions: 1
Published: over 6 years ago

10.1590/1678-9199-JVATITD-2020-0053

Oxidative stress and antioxidant defense in detoxification systems of snake venom-induced toxicity
Cited by: 5
Author(s): Degang Dong, Zhongping Deng, Zhangren Yan, Wenli Mao, Jae-Seon Yi, Mei Song, Qiang Li, Jun Chen, Qi Chen, Liang Liu, Xi Wang, Xiuqin Huang, Wanchun Wang
Software Mentions: 1
Published: almost 7 years ago

10.1128/JVI.01751-17

Viperin Targets Flavivirus Virulence by Inducing Assembly of Noninfectious Capsid Particles
Cited by: 39
Author(s): Kirstin Vonderstein, Emma Nilsson, Philipp Hubel, Larsard Nygard Skalman, Arunkumar S. Upadhyay, Jenny Pasto, Andreas Pichlmair, Richard Lundmark, Anna K. Överby
Software Mentions: 1
Published: almost 9 years ago

10.1128/JVI.02211-17

N-Terminomics TAILS Identifies Host Cell Substrates of Poliovirus and Coxsackievirus B3 3C Proteinases That Modulate Virus Infection
Cited by: 58
Author(s): Julienne Jagdeo, Antoine Dufour, Théo Klein, Nestor Solis, Oded Kleifeld, Jayachandran N. Kizhakkedathu, Honglin Luo, Christopher M. Overall, Eric Jan
Software Mentions: 1
Published: over 8 years ago

10.1128/JVI.03262-15

ARID3B: a Novel Regulator of the Kaposi's Sarcoma-Associated Herpesvirus Lytic Cycle
Cited by: 10
Author(s): Janet Wood, James R. Boyne, Christina Paulus, Brian R. Jackson, Michael Nevels, Adrian Whitehouse, David J. Hughes
Software Mentions: 1
Published: almost 10 years ago

10.1155/2019/1659468

Oxidative Stress Induced by the Deubiquitinase Inhibitor b-AP15 Is Associated with Mitochondrial Impairment
Cited by: 8
Author(s): Xiaonan Zhang, Belén Espinosa, Amir Ata Saei, Pädraig D’Arcy, Roman A. Zubarev, Stig Linder
Software Mentions: 1
Published: over 7 years ago

10.3390/nu11102263

Comprehensive Detection of Isopeptides between Human Tissue Transglutaminase and Gluten Peptides
Cited by: 11
Author(s): Barbara Lexhaller, Christina Ludwig, Katharina Anne Scherf
Software Mentions: 1
Published: about 7 years ago

10.3390/nu9090963

Effect of Processing Intensity on Immunologically Active Bovine Milk Serum Proteins
Cited by: 53
Author(s): Tabea Brick, Markus Ege, Sjef Boeren, A. Böck, Erika von Mutius, Jacques Vervoort, Kasper Hettinga
Software Mentions: 1
Published: about 9 years ago

10.3390/nu11030499

Variability of Serum Proteins in Chinese and Dutch Human Milk during Lactation
Cited by: 21
Author(s): M. Elwakiel, Sjef Boeren, Jos A. Hageman, Ignatius Man‐Yau Szeto, Henk A. Schols, Kasper Hettinga
Software Mentions: 1
Published: over 7 years ago

10.3390/nu12082483

Peptide Release after Simulated Infant In Vitro Digestion of Dry Heated Cow’s Milk Protein and Transport of Potentially Immunoreactive Peptides across the Caco-2 Cell Monolayer
Cited by: 14
Author(s): Hannah E. Zenker, Harry J. Wichers, Monic M M Tomassen, Sjef Boeren, Nicolette W. de Jong, Kasper Hettinga
Software Mentions: 1
Published: about 6 years ago

10.3390/nu10121981

Proteomic Analysis of Zn Depletion/Repletion in the Hormone-Secreting Thyroid Follicular Cell Line FRTL-5
Cited by: 3
Author(s): Barbara Guantario, Antonio Capolupo, Maria Chiara Monti, Guido Leoni, Giulia Ranaldi, Alessandra Tosco, Liberato Marzullo, Chiara Murgia, Giuditta Perozzi
Software Mentions: 1
Published: almost 8 years ago

10.3390/nu12041169

Maternal Allergy and the Presence of Nonhuman Proteinaceous Molecules in Human Milk
Cited by: 9
Author(s): Pieter Dekker, Sjef Boeren, Alet H. Wijga, Gerard H. Koppelman, Jacques Vervoort, Kasper Hettinga
Software Mentions: 1
Published: over 6 years ago

10.3390/nu12020425

Whey Peptides Stimulate Differentiation and Lipid Metabolism in Adipocytes and Ameliorate Lipotoxicity-Induced Insulin Resistance in Muscle Cells
Cited by: 20
Author(s): Kenneth D’Souza, Angella Mercer, Hannah Mawhinney, Thomas Pulinilkunnil, Chibuike C. Udenigwe, Petra C. Kienesberger
Software Mentions: 1
Published: over 6 years ago

10.7150/thno.61832

Multi-omic profiling of plasma reveals molecular alterations in children with COVID-19
Cited by: 25
Author(s): Chong Wang, Xufang Li, Wanshan Ning, Sitang Gong, Fengxia Yang, Chunxiao Fang, Yu Gong, Di Wu, Mingbin Huang, Yujie Gou, Shanshan Fu, Yujie Ren, Ruyi Yang, Yang Qiu, Yu Xue, Yi Xu, Xi Zhou
Software Mentions: 1
Published: almost 6 years ago

10.3390/nu13082657

Anti-Salmonella Activity and Peptidomic Profiling of Peptide Fractions Produced from Sturgeon Fish Skin Collagen (Huso huso) Using Commercial Enzymes
Cited by: 8
Author(s): Maryam Atef, Yasmina Ait Chait, Seýed Mahdi Ojagh, Ali Mohammad Latifi, Mina Esmaeili, Riadh Hammami, Chibuike C. Udenigwe
Software Mentions: 1
Published: about 5 years ago

10.3390/toxins9100304

Characterization of Post-Translational Modifications and Cytotoxic Properties of the Adenylate-Cyclase Hemolysin Produced by Various Bordetella pertussis and Bordetella parapertussis Isolates
Cited by: 6
Author(s): Valérie Bouchez, Thibaut Douché, Mélody Dazas, Sophie Delaplane, Mariette Matondo, Julia Chamot‐Rooke, Nicole Guiso
Software Mentions: 1
Published: about 9 years ago

10.3390/toxins10070304

Determination of the Role of Microcystis aeruginosa in Toxin Generation Based on Phosphoproteomic Profiles
Cited by: 20
Author(s): Jiangqi Qu, Liping Shen, Meng Zhao, Wentong Li, Chengxia Jia, Hua Zhu, Qingjing Zhang
Software Mentions: 1
Published: about 8 years ago

10.3390/toxins11020111

The Adenylate Cyclase (CyaA) Toxin from Bordetella pertussis Has No Detectable Phospholipase A (PLA) Activity In Vitro
Cited by: 3
Author(s): Alexis Voegele, Mirko Sadi, Dorothée Raoux-Barbot, Thibaut Douché, Mariette Matondo, Daniel Ladant, Alexandre Chenal
Software Mentions: 1
Published: over 7 years ago

10.3390/toxins12080500

Evaluation of Antifungal Activity of Naja pallida and Naja mossambica Venoms against Three Candida Species
Cited by: 6
Author(s): Ewelina Kuna, Aleksandra Bocian, Konrad K. Hus, Vladimir Petrílla, Monika Petrillová, Jaroslav Legáth, Anna Lewińska, Maciej Wnuk
Software Mentions: 1
Published: about 6 years ago

10.3390/toxins12120792

Several New Putative Bacterial ADP-Ribosyltransferase Toxins Are Revealed from In Silico Data Mining, Including the Novel Toxin Vorin, Encoded by the Fire Blight Pathogen Erwinia amylovora
Cited by: 4
Author(s): Olivier Tremblay, Zachary Thow, A. Rod Merrill
Software Mentions: 1
Published: almost 6 years ago

10.1007/s11248-017-0027-0

Establishment of a tagged variant of Lgr4 receptor suitable for functional and expression studies in the mouse
Cited by: 2
Author(s): Vı́tězslav Křı́ž, Michaela Krausová, Petra Burešová, Jan Dobeš, Dušan Hrčkulák, Oľga Babošová, Jiří Švec, Vladimír Kořínek
Software Mentions: 1
Published: over 9 years ago

10.1038/tp.2016.224

Proteomic analysis of the postsynaptic density implicates synaptic function and energy pathways in bipolar disorder
Cited by: 48
Author(s): Melanie Föcking, Patrick Dicker, Lorna M. Lopez, Mafdalena Hryniewiecka, Kieran Wynne, James English, Gerard Cagney, David Cotter
Software Mentions: 1
Published: almost 10 years ago

10.1038/s41398-020-01024-9

Integrated phosphoproteomic and metabolomic profiling reveals perturbed pathways in the hippocampus of gut microbiota dysbiosis mice
Cited by: 21
Author(s): Haiyang Wang, Lanxiang Liu, Xuechen Rao, Benhua Zeng, Ying Yu, Chanjuan Zhou, Li Zeng, Peng Zheng, Juncai Pu, Shaohua Xu, Ke Cheng, Hanping Zhang, Ping Ji, Hong Wei, Peng Xie
Software Mentions: 1
Published: almost 6 years ago

10.1167/tvst.9.11.16

Protein Composition of the Subretinal Fluid Suggests Selective Diffusion of Vitreous Proteins in Retinal Detachment
Cited by: 7
Author(s): Ebbe Toftgaard Poulsen, Xhevat Lumi, Anders Kragh Hansen, Jan J. Enghild, Goran Petrovski
Software Mentions: 1
Published: almost 6 years ago

10.1128/mBio.01092-17

The Capacity of Mycobacterium tuberculosis To Survive Iron Starvation Might Enable It To Persist in Iron-Deprived Microenvironments of Human Granulomas
Cited by: 91
Author(s): Krishna Kurthkoti, Hamel Amin, Mohlopheni J. Marakalala, Saleena Ghanny, Selvakumar Subbian, Alexandra Sakatos, Jonathan Livny, Sarah M. Fortune, Michael Berney, G. Marcela Rodríguez
Software Mentions: 1
Published: about 9 years ago

10.1128/mBio.00959-18

Global Proteomic Changes Induced by the Epstein-Barr Virus Oncoproteins Latent Membrane Protein 1 and 2A
Cited by: 8
Author(s): Robert M. DeKroon, Harsha Gunawardena, Rachel Hood Edwards, Nancy Raab‐Traub
Software Mentions: 1
Published: over 8 years ago

10.1128/mBio.00340-19

Stress-Induced MazF-Mediated Proteins in Escherichia coli
Cited by: 18
Author(s): Akanksha Nigam, Tamar Ziv, Adi Oron-Gottesman, Hanna Engelberg‐Kulka
Software Mentions: 1
Published: over 7 years ago

10.1128/mBio.02825-18

Comprehensive Analysis of Aspergillus nidulans PKA Phosphorylome Identifies a Novel Mode of CreA Regulation
Cited by: 30
Author(s): Laryssa Freitas Ribeiro, Cynthia Chelius, Karthik Boppidi, Nisha Naik, Simin Hossain, Jessica J. J. Ramsey, Jyothi Kumar, Lucas F. Ribeiro, Marc Ostermeier, Bao Tran, Young Ah Goo, Leandro José de Assis, Mevlüt Ulaş, Özgür Bayram, Gustavo H. Goldman, Stephen R. Lincoln, Ranjan Srivastava, Steven D. Harris, Mark R. Marten
Software Mentions: 1
Published: over 7 years ago

10.1128/mBio.01138-19

Serine-Threonine Kinases Encoded by Split hipA Homologs Inhibit Tryptophanyl-tRNA Synthetase
Cited by: 25
Author(s): Stine Vang Nielsen, Kathryn Jane Turnbull, Mohammad Roghanian, René L. Bærentsen, Maja Šemanjski, D.E. Brodersen, Boris Maček, Kenn Gerdes
Software Mentions: 1
Published: over 7 years ago

10.1128/mBio.01832-19

Clustering as a Means To Control Nitrate Respiration Efficiency and Toxicity in Escherichia coli
Cited by: 15
Author(s): Suzy Bulot, Stéphane Audebert, Lætitia Pieulle, Farida Seduk, Emilie Baudelet, Léon Espinosa, Marie-Camille Pizay, Luc Camoin, Axel Magalon
Software Mentions: 1
Published: almost 7 years ago

10.1128/mBio.00625-20

The WblC/WhiB7 Transcription Factor Controls Intrinsic Resistance to Translation-Targeting Antibiotics by Altering Ribosome Composition
Cited by: 18
Author(s): Ju Hyun Lee, Ji-Sun Yoo, Yeonbum Kim, Jong Seo Kim, Eun Jin Lee, Jung Hye Roe
Software Mentions: 1
Published: over 6 years ago

10.1128/mBio.00516-20

The Cellular Response to Lanthanum Is Substrate Specific and Reveals a Novel Route for Glycerol Metabolism in Pseudomonas putida KT2440
Cited by: 18
Author(s): Matthias Wehrmann, Maxime Toussaint, Jens Pfannstiel, Patrick Billard, Janosch Klebensberger
Software Mentions: 1
Published: over 6 years ago

10.1128/mBio.01287-20

Phosphorylation-Dependent Assembly of a 14-3-3 Mediated Signaling Complex during Red Blood Cell Invasion by Plasmodium falciparum Merozoites
Cited by: 11
Author(s): Kunal R. More, Inderjeet Kaur, Quentin Giai Gianetto, Brandon M. Invergo, Thibault Chaze, Ravi Jain, Christèle Huon, Petra Gutenbrunner, Hendrik Weisser, Mariette Matondo, Jyoti S. Choudhary, Gordon Langsley, Shailja Singh, Chetan E. Chitnis
Software Mentions: 1
Published: about 6 years ago

10.1128/mBio.00123-21

The DnaK Chaperone System Buffers the Fitness Cost of Antibiotic Resistance Mutations in Mycobacteria
Cited by: 11
Author(s): Allison Fay, John Philip, Priya Saha, Ronald C. Hendrickson, Michael S. Glickman, Kristin Burns-Huang
Software Mentions: 1
Published: over 5 years ago

10.1128/mBio.03674-20

A Cyanobacterial Component Required for Pilus Biogenesis Affects the Exoproteome
Cited by: 13
Author(s): Yevgeni Yegorov, Eleonora Sendersky, Shaul Zilberman, Elad Nagar, Hiba Waldman Ben‐Asher, Eyal Shimoni, Ryan Simkovsky, Susan S. Golden, Andy LiWang, Rakefet Schwarz
Software Mentions: 1
Published: over 5 years ago

10.1128/mBio.00519-21

Ser/Thr Kinase-Dependent Phosphorylation of the Peptidoglycan Hydrolase CwlA Controls Its Export and Modulates Cell Division in Clostridioides difficile
Cited by: 9
Author(s): Tránsito García-García, Sandrine Poncet, Elodie Cuenot, Thibaut Douché, Quentin Giai Gianetto, Johann Peltier, Pascal Courtin, Marie‐Pierre Chapot‐Chartier, Mariette Matondo, Bruno Dupuy, Thomas Candela, Isabelle Martin‐Verstraete
Software Mentions: 1
Published: over 5 years ago

10.1128/mSphere.00365-20

Phosphoproteomics of Aspergillus fumigatus Exposed to the Antifungal Drug Caspofungin
Cited by: 7
Author(s): Eliciane Cevolani Mattos, Giuseppe Palmisano, Gustavo H. Goldman
Software Mentions: 1
Published: over 6 years ago

10.1128/mSphere.00134-21

A Small Regulatory RNA Generated from the malK 5′ Untranslated Region Targets Gluconeogenesis in Vibrio Species
Cited by: 3
Author(s): Xing Luo, Marick Esberard, Philippe Bouloc, Annick Jacq
Software Mentions: 1
Published: over 5 years ago

10.1128/mSphere.00327-21

Mitochondrial Contact Site and Cristae Organization System and F 1 F O -ATP Synthase Crosstalk Is a Fundamental Property of Mitochondrial Cristae
Cited by: 10
Author(s): Lawrence Rudy Cadena, Ondřej Gahura, Brian Panicucci, Alena Zı́ková, Hassan Hashimi
Software Mentions: 1
Published: over 5 years ago

10.1128/mSystems.00149-16

Global Analysis and Comparison of the Transcriptomes and Proteomes of Group A Streptococcus Biofilms
Cited by: 24
Author(s): Jeffrey A. Freiberg, Yoann Le Breton, Bao Tran, Alison Scott, Janette M. Harro, Robert K. Ernst, Young Ah Goo, Emmanuel F. Mongodin, David R. Goodlett, Kevin S. McIver, Mark E. Shirtliff
Software Mentions: 1
Published: almost 10 years ago

10.1128/mSystems.00240-18

Proteomic Dissection of the Cellulolytic Machineries Used by Soil-DwellingBacteroidetes
Cited by: 27
Author(s): Marcel Taillefer, Magnus Ø. Arntzen, Bernard Henrissat, Phillip B. Pope, Johan Larsbrink
Software Mentions: 1
Published: almost 8 years ago

10.1128/mSystems.00314-18

Salmonella Proteomic Profiling during Infection Distinguishes the Intracellular Environment of Host Cells
Cited by: 20
Author(s): Zezhou Li, Yanhua Liu, Jiaqi Fu, Buyu Zhang, Sen Cheng, Mei Wu, Zhen Wang, Jiezhang Jiang, Cheng Chang, Xiaoyun Liu
Software Mentions: 1
Published: over 7 years ago

10.1128/mSystems.01129-20

Proteome-Wide Analysis of Lysine 2-Hydroxyisobutyrylation in Candida albicans
Cited by: 8
Author(s): Hailin Zheng, Nana Song, Xiaowei Zhou, Huan Mei, Dongmei Li, Xiaofang Li, Weida Liu
Software Mentions: 1
Published: over 5 years ago

10.1128/mSystems.00549-21

Proteome Dynamics during Antibiotic Persistence and Resuscitation
Cited by: 4
Author(s): Maja Šemanjski, Fabio Lino Gratani, Till Englert, Payal Nashier, Viktor Beke, Nicolas C. Nalpas, Elsa Germain, Shilpa Elizabeth George, Christiane Wolz, Kenn Gerdes, Boris Maček
Software Mentions: 1
Published: about 5 years ago

10.1007/s00439-021-02345-5

ASL expression in ALDH1A1+ neurons in the substantia nigra metabolically contributes to neurodegenerative phenotype
Cited by: 6
Author(s): Shaul Lerner, Raya Eilam, Lital N. Adler, Julien Baruteau, Topaz Kreiser, Michael Tsoory, Alexander Brandis, Tevie Mehlman, Mina Ryten, Juan A. Botía, Sonia García-Ruiz, Alejandro Cisterna Garcia, Carlo Dionisi‐Vici, Giusy Ranucci, Marco Spada, Ram Mazkereth, Robert McCarter, Rima Izem, Thomas J Balmat, Rachel L. Richesson, Ehud Gazit, Sandesh C.S. Nagamani, Ayelet Erez
Software Mentions: 1
Published: about 5 years ago

10.1186/s40246-014-0022-y

Molecular signatures that correlate with induction of lens regeneration in newts: lessons from proteomic analysis
Cited by: 16
Author(s): Konstantinos Sousounis, Rital B. Bhavsar, Mario Looso, Marcus Krüger, Jessica L. Beebe, Thomas Braun, Panagiotis A. Tsonis
Software Mentions: 1
Published: almost 12 years ago

10.1038/s41396-020-00769-x

Proteome specialization of anaerobic fungi during ruminal degradation of recalcitrant plant fiber
Cited by: 41
Author(s): Live Heldal Hagen, Charles Brooke, Claire Shaw, Angela D. Norbeck, Hailan Piao, Magnus Ø. Arntzen, Heather Olson, Alex Copeland, Nancy G. Isern, Anil Shukla, Simon Roux, Vincent Lombard, Bernard Henrissat, Michelle O’Malley, Igor V. Grigoriev, Susannah G. Tringe, Roderick I. Mackie, Ljiljana Paša‐Tolić, Phillip B. Pope, Matthias Hess
Software Mentions: 1
Published: about 6 years ago

10.1038/s41396-018-0243-5

Adaptive mechanisms that provide competitive advantages to marine bacteroidetes during microalgal blooms
Cited by: 75
Author(s): Frank Unfried, Stefan Becker, C.S. Robb, Jan Hendrik Hehemann, Stephanie Markert, Stefan E. Heiden, Tjorven Hinzke, Dörte Becher, Greta Reintjes, Karen Krüger, Burak Avcı, Lennart Kappelmann, Richard L. Hahnke, Tanja Fischer, Jens Harder, Hanno Teeling, Bernhard M. Fuchs, Tristan Barbeyron, Rudolf Amann, Thomas Schweder
Software Mentions: 1
Published: about 8 years ago

10.1186/s13046-018-0737-z

Lipid accumulation in human breast cancer cells injured by iron depletors
Cited by: 15
Author(s): Maida De Bortoli, Elena Taverna, Elisa Maffioli, Patrizia Casalini, Francesco Crisafi, Vikas Kumar, Claudio Caccia, Dario Polli, Gioacchino Tedeschi, Italia Bongarzone
Software Mentions: 1
Published: over 8 years ago

10.1186/s13046-021-01879-w

Overexpressed WDR3 induces the activation of Hippo pathway by interacting with GATA4 in pancreatic cancer
Cited by: 9
Author(s): Wenjie Su, Shaihong Zhu, Kai Chen, Hongji Yang, Mingwu Tian, Qiang Fu, Guo‐Ming Shi, Shijian Feng, Dianyun Ren, Xin Jin, Chong Yang
Software Mentions: 1
Published: over 5 years ago

10.1186/s13046-021-02095-2

circHMGCS1–016 reshapes immune environment by sponging miR-1236-3p to regulate CD73 and GAL-8 expression in intrahepatic cholangiocarcinoma
Cited by: 24
Author(s): Yaping Xu, Ze-Ning Dong, Siwei Wang, Yi-Min Zheng, Chi Zhang, Yingqun Zhou, Yujie Zhao, Yan Zhao, Wenquan Feng, Rui Peng, Maochun Tang, Dou‐Sheng Bai, Xiaoyong Huang, Chuanyong Guo
Software Mentions: 1
Published: about 5 years ago

10.1084/jem.20200206

Deciphering and predicting CD4+ T cell immunodominance of influenza virus hemagglutinin
Cited by: 26
Author(s): Antonino Cassotta, Philipp Paparoditis, Roger Geiger, Ramgopal R. Mettu, Samuel J. Landry, Alessia Donati, Marco Benevento, Mathilde Foglierini, David Lewis, Antonio Lanzavecchia, Federica Sallusto
Software Mentions: 1
Published: about 6 years ago

10.1080/20013078.2018.1490145

Enrichment of extracellular vesicles from human synovial fluid using size exclusion chromatography
Cited by: 69
Author(s): Andrew D Foers, Simon Chatfield, Laura F. Dagley, Benjamin J. Scicluna, Andrew I. Webb, Lesley Cheng, Andrew F. Hill, Ian P. Wicks, Ken C Pang
Software Mentions: 1
Published: over 8 years ago

10.1080/20013078.2019.1635420

Mitochondrial protein enriched extracellular vesicles discovered in human melanoma tissues can be detected in patient plasma
Cited by: 94
Author(s): Su Chul Jang, Rossella Crescitelli, Aleksander Cvjetkovic, Valerio Belgrano, Roger Olofsson Bagge, Karin Sundfeldt, Takahiro Ochiya, Raghu Kalluri, Jan Lötvall
Software Mentions: 1
Published: about 7 years ago

10.1002/jev2.12109

Apoptotic vesicles restore liver macrophage homeostasis to counteract type 2 diabetes
Cited by: 70
Author(s): Chenxi Zheng, Bing‐Dong Sui, Xiao Zhang, Jiachen Hu, Ji Chen, Liu Jin, Di Wu, Qingyuan Ye, Lei Xiang, Xinyu Qiu, Siying Liu, Zhihong Deng, Jun Zhou, Shiyu Liu, Songtao Shi, Yan Jin
Software Mentions: 1
Published: over 5 years ago

10.1002/jev2.12129

Cryptococcus extracellular vesicles properties and their use as vaccine platforms
Cited by: 39
Author(s): Juliana Rizzo, Sarah Sze Wah Wong, Anastasia D. Gazi, Frédérique Moyrand, Thibault Chaze, Pierre‐Henri Commère, Sophie Novault, Mariette Matondo, Gérard Péhau‐Arnaudet, Flavia C G Reis, Matthijn Vos, Lysangela Ronalte Alves, Robin C. May, Leonardo Nimrichter, Márcio L. Rodrigues, Vishukumar Aimanianda, Guilhem Janbon
Software Mentions: 1
Published: about 5 years ago

Projects: cran: Andromeda

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Science Score: 85/100

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Papers Mentioning Andromeda 1,724