bioconductor: clusterProfiler | Projects

10.1186/s12863-020-00852-4

Transcriptome analysis identifies genes and co-expression networks underlying heat tolerance in pigs
Cited by: 9
Author(s): Yuqing He, Christian Maltecca, Francesco Tiezzi, Emmanuel Lozada Soto, W. L. Flowers
Software Mentions: 5
Published: about 6 years ago

10.1042/BSR20194324

Identification of metastasis and prognosis-associated genes for serous ovarian cancer
Cited by: 12
Author(s): Yijun Yang, Suwan Qi, Chun Shi, Xiao Han, Juanpeng Yu, Lei Zhang, Shanshan Qin, Yingming Gao
Software Mentions: 5
Published: about 6 years ago

10.1038/s41419-020-2520-2

NF-kappa B interacting long noncoding RNA enhances the Warburg effect and angiogenesis and is associated with decreased survival of patients with gliomas
Cited by: 16
Author(s): Chen Zheng, Shiting Li, Lin Shen, Xiangyu Wei, Hanshuo Zhu, Xueyi Wang, Min Yang, Xiaohang Zheng
Software Mentions: 5
Published: about 6 years ago

10.3389/fgene.2021.672674

Four Prognosis-Associated lncRNAs Serve as Biomarkers in Ovarian Cancer
Cited by: 10
Author(s): Jianfeng Zheng, Jialu Guo, Huizhi Zhang, Benben Cao, XU Guomin, Zhifen Zhang, Jinyi Tong
Software Mentions: 5
Published: almost 5 years ago

10.3389/fphys.2019.00278

Weighted Gene Co-expression Network Analysis for RNA-Sequencing Data of the Varicose Veins Transcriptome
Cited by: 14
Author(s): Jianbin Zhang, Qiangqiang Nie, Chaozeng Si, Wang Cheng, Yang Chen, Weiliang Sun, Pei Lin, Jing Guo, Jie Kong, Yiyao Cui, Feng Wang, Xueqiang Fan, Zhidong Ye, Jianyan Wen, Peng Liu
Software Mentions: 5
Published: about 7 years ago

10.3390/biom9100586

Allogenic Faecal Microbiota Transfer Induces Immune-Related Gene Sets in the Colon Mucosa of Patients with Irritable Bowel Syndrome
Cited by: 5
Author(s): Savanne Holster, Guido Hooiveld, Dirk Repsilber, Willem M. de Vos, Robert Jan Brummer, Julia König
Software Mentions: 5
Published: over 6 years ago

10.1186/s12862-021-01753-5

Rapid evolution and molecular convergence in cryptorchidism-related genes associated with inherently undescended testes in mammals
Cited by: 4
Author(s): Simin Chai, Ran Tian, Juanjuan Bi, Shixia Xu, Wenhua Ren
Software Mentions: 5
Published: over 5 years ago

10.1186/s13578-020-00517-w

Identification of predictors based on drug targets highlights accurate treatment of goserelin in breast and prostate cancer
Cited by: 6
Author(s): Yue Zhao, Huimin Sun, Jianzhong Zheng, Chen Shao, Dongwei Zhang
Software Mentions: 5
Published: over 5 years ago

10.3389/fonc.2021.686044

A Novel Prognostic Model Based on Ferroptosis-Related Gene Signature for Bladder Cancer
Cited by: 27
Author(s): Libo Yang, Chunyan Li, Yang Qin, Guoying Zhang, Bin Zhao, Ziyuan Wang, Yang H. Huang, Yong Yang
Software Mentions: 5
Published: almost 5 years ago

10.3389/fonc.2021.640272

Identification of Novel Alternative Splicing Events Associated With Tumorigenesis, Protein Modification, and Immune Microenvironment in Early-Onset Gastric Cancer
Cited by: 4
Author(s): Jian Zhang, Ajay Goel, Lin Zhu
Software Mentions: 5
Published: about 5 years ago

10.3390/curroncol28040214

Targeted Next-Generation Sequencing of Circulating Tumor DNA Mutations among Metastatic Breast Cancer Patients
Cited by: 1
Author(s): Ming Sun, Fangqin Lin, Lu-Jia Chen, Hong Li, Wei‐De Lin, Hongwu Du, Xiaobo Yang, Ming Li
Software Mentions: 5
Published: almost 5 years ago

10.3389/fgene.2019.01333

A Novel Prognostic Index Based on Alternative Splicing in Papillary Renal Cell Carcinoma
Cited by: 2
Author(s): Zhipeng Wu, Jinhui Liu, Rui Sun, Dongming Chen, Kai Wang, Changchun Cao, Xianlin Xu
Software Mentions: 5
Published: over 6 years ago

10.3389/fonc.2021.632571

Prediction of Biochemical Recurrence-Free Survival of Prostate Cancer Patients Leveraging Multiple Gene Expression Profiles in Tumor Microenvironment
Cited by: 10
Author(s): Rui Zhou, Yuanfa Feng, Jian‐Heng Ye, Zhengxue Han, Yu‐Xiang Liang, Qing-Biao Chen, Xiaoming Xu, Yuhan Huang, Zhenyu Jia, Weide Zhong
Software Mentions: 5
Published: over 4 years ago

10.3389/fonc.2019.00912

Construction of a Competitive Endogenous RNA Network and Identification of Potential Regulatory Axis in Gastric Cancer
Cited by: 21
Author(s): Hongda Pan, Chen Guo, Jianji Pan, Dongwei Guo, Shibo Song, Ye Zhou, Dazhi Xu
Software Mentions: 5
Published: over 6 years ago

10.1155/2020/3909416

Recognition of Immune Microenvironment Landscape and Immune-Related Prognostic Genes in Breast Cancer
Cited by: 7
Author(s): Huiling Wang, Sylvaine You, Meng Fang, Qian Fang
Software Mentions: 5
Published: over 5 years ago

10.3389/fonc.2020.01300

A Prognostic Nomogram Combining Immune-Related Gene Signature and Clinical Factors Predicts Survival in Patients With Lung Adenocarcinoma
Cited by: 50
Author(s): Congkuan Song, Zixin Guo, Donghu Yu, Yujin Wang, Qingwen Wang, Zhe Dong, Weidong Hu
Software Mentions: 5
Published: almost 6 years ago

10.18632/aging.102278

Association between promoter DNA methylation and gene expression in the pathogenesis of ischemic stroke
Cited by: 20
Author(s): Guo-Xiong Deng, Ning Xu, Qi Huang, Jin-Yue Tan, Zhao Zhang, Xianfeng Li, Jinru Wei
Software Mentions: 5
Published: over 6 years ago

10.1155/2020/6034670

Bioinformatics Analysis to Screen the Key Prognostic Genes in Tumor Microenvironment of Bladder Cancer
Cited by: 6
Author(s): Zhao Zhang, Dongshan Chen, Zeyan Li, Zhao Liu, Lei Yan, Zhonghua Xu
Software Mentions: 5
Published: over 6 years ago

10.18632/aging.203121

Identification of microenvironment related potential biomarkers of biochemical recurrence at 3 years after prostatectomy in prostate adenocarcinoma
Cited by: 9
Author(s): Xiaoru Sun, Lu Wang, Hongkai Li, Chuandi Jin, Yuanyuan Yu, Lei Hou, Xinhui Liu, Yifan Yu, Ran Yan, Fuzhong Xue
Software Mentions: 5
Published: about 5 years ago

10.1371/journal.pone.0240943

Three-gene prognostic biomarkers for seminoma identified by weighted gene co-expression network analysis
Cited by: 2
Author(s): Hualin Chen, Gang Chen, Yang Pan, Xiaoxiang Jin
Software Mentions: 5
Published: over 5 years ago

10.1002/ctm2.498

An epigenomic landscape of cervical intraepithelial neoplasia and cervical cancer using single‐base resolution methylome and hydroxymethylome
Cited by: 6
Author(s): Yingxin Han, Liyan Ji, Yanfang Guan, Mengya Ma, Pansong Li, Yinge Xue, Yinxin Zhang, Wanqiu Huang, Yuhua Gong, Li Jiang, Xipeng Wang, Hong Xie, Boping Zhou, Jiayin Wang, Junwen Wang, Jinghua Han, Yuliang Deng, Xin Yi, Fei Gao, Jian Huang
Software Mentions: 5
Published: almost 5 years ago

10.3389/fonc.2021.685980

Role of NRP1 in Bladder Cancer Pathogenesis and Progression
Cited by: 15
Author(s): Yun Dong, Weiming Ma, Zengliang Shi, Zhiguo Zhang, Jing Zhou, Yang Li, Shaoqi Zhang, Kun Pang, Bibo Li, Wen-da Zhang, Tao Fan, Guanghao Zhu, Xue Li, Rui Li, Ying Liu, Lin Hao, Conghui Han
Software Mentions: 5
Published: almost 5 years ago

10.1371/journal.pone.0252508

Network pharmacology and molecular docking study on the mechanism of colorectal cancer treatment using Xiao-Chai-Hu-Tang
Cited by: 23
Author(s): Jingyun Jin, Bin Chen, Xiangyang Zhan, Zhiyi Zhou, Hui Liu, Yun Dong
Software Mentions: 5
Published: about 5 years ago

10.18632/aging.102373

Bioinformatic profiling of prognosis-related genes in the breast cancer immune microenvironment
Cited by: 29
Author(s): Fang Bai, Yu-Chun Jin, Peng Zhang, Hongliang Chen, Yi‐Peng Fu, Mingdi Zhang, Zhen Weng, Kangning Wu
Software Mentions: 5
Published: over 6 years ago

10.3389/fncel.2020.00131

Loss of Arid1a Promotes Neuronal Survival Following Optic Nerve Injury
Cited by: 3
Author(s): Xue-Qi Peng, Shang-Kun Dai, Changping Li, Peipei Li, Zhimeng Wang, Heng Du, Zhao‐Qian Teng, Shuguang Yang, Chang‐Mei Liu
Software Mentions: 5
Published: about 6 years ago

10.1186/s12885-021-08115-w

Identification of PIK3CA multigene mutation patterns associated with superior prognosis in stomach cancer
Cited by: 5
Author(s): Yu Yu, Zhouqing Xie, Mingxin Zhao, Xiaohua Lian
Software Mentions: 5
Published: about 5 years ago

10.3389/fonc.2021.633357

Identification of the Prognostic Signatures of Glioma With Different PTEN Status
Cited by: 12
Author(s): Pei Zhang, Xinyi Meng, Liqun Liu, Shengzhen Li, Yang Li, Sakhawat Ali, Shanhu Li, Jichuan Xiong, Xuefeng Li, Shouwei Li, Xia Qin, Lei Dong
Software Mentions: 5
Published: almost 5 years ago

10.1186/s12885-020-06799-0

Development and validation of a five-immune gene prognostic risk model in colon cancer
Cited by: 37
Author(s): Haitao Chen, Jun Luo, Jingyi Guo
Software Mentions: 5
Published: about 6 years ago

10.3389/fonc.2020.605097

An Integrative Pan-Cancer Analysis Revealing LCN2 as an Oncogenic Immune Protein in Tumor Microenvironment
Cited by: 33
Author(s): Wen‐Xiu Xu, Jian Zhang, Yu-Ting Hua, Su-Jin Yang, Dandan Wang, Jinhai Tang
Software Mentions: 5
Published: over 5 years ago

10.1002/advs.202004973

In Vivo Induction of Regulatory T Cells Via CTLA‐4 Signaling Peptide to Control Autoimmune Encephalomyelitis and Prevent Disease Relapse
Cited by: 13
Author(s): Gil Ran Kim, Won-Ju Kim, Su-Ho Lim, Hong-Gyun Lee, Ja Hyun Koo, Kyung Ho Nam, Sung Min Kim, Sung Dong Park, Je-Min Choi
Software Mentions: 5
Published: about 5 years ago

10.1371/journal.pone.0237066

Lack of TLR4 modifies the miRNAs profile and attenuates inflammatory signaling pathways
Cited by: 12
Author(s): Juan R. Ureña‐Peralta, Raúl Pérez-Moraga, Francisco García‐García, Consuelo Guerri
Software Mentions: 5
Published: almost 6 years ago

10.1371/journal.pone.0237006

RNAAgeCalc: A multi-tissue transcriptional age calculator
Cited by: 31
Author(s): Ruwei Xu, Pei Fen Kuan
Software Mentions: 5
Published: almost 6 years ago

10.1038/s41419-021-03740-6

Single-cell analysis reveals urothelial cell heterogeneity and regenerative cues following cyclophosphamide-induced bladder injury
Cited by: 12
Author(s): Xiaomu Cheng, Huadong Lai, Wenqin Luo, Man Zhang, Juju Miao, Weichen Song, Shunpeng Xing, Jia Wang, Wei‐Qiang Gao
Software Mentions: 5
Published: about 5 years ago

10.3389/fonc.2021.615234

Combined Analysis of RNA Sequence and Microarray Data Reveals a Competing Endogenous RNA Network as Novel Prognostic Markers in Malignant Pleural Mesothelioma
Cited by: 5
Author(s): Weicheng Duan, Kang Wang, Yijie Duan, Xiuyi Chen, Xufeng Chu, Ping Hu, Bo Xiong
Software Mentions: 5
Published: about 5 years ago

10.3389/fcell.2021.711348

Characterization of Molecular Subtypes in Head and Neck Squamous Cell Carcinoma With Distinct Prognosis and Treatment Responsiveness
Cited by: 10
Author(s): Pei Zhang, Shue Li, Tingting Zhang, Fengzhen Cui, Jihua Shi, Fengbo Zhao, Xia Sheng
Software Mentions: 5
Published: almost 5 years ago

10.1371/journal.pone.0257343

Analysis of potential genetic biomarkers and molecular mechanism of smoking-related postmenopausal osteoporosis using weighted gene co-expression network analysis and machine learning
Cited by: 7
Author(s): Shaoshuo Li, Baixing Chen, Hao Chen, Zhen Hua, Yang Shao, Heng Yin, Jianwei Wang
Software Mentions: 5
Published: over 4 years ago

10.1155/2021/5553811

Identification of Potential Biomarkers Associated with Acute Myocardial Infarction by Weighted Gene Coexpression Network Analysis
Cited by: 12
Author(s): Yan Wang, Xiangyang Zhang, Min Duan, Chenguang Zhang, Ke Wang, Lili Feng, Linlin Song, Sheng Xi Wu, Xuyan Chen
Software Mentions: 5
Published: almost 5 years ago

10.1155/2020/3598417

Effect of BRCA1 on the Concurrent Chemoradiotherapy Resistance of Cervical Squamous Cell Carcinoma Based on Transcriptome Sequencing Analysis
Cited by: 13
Author(s): Xin Wen, Lingling Shui, Manhua Cui
Software Mentions: 5
Published: almost 6 years ago

10.3389/fonc.2020.586019

Three Immune-Associated Subtypes of Diffuse Glioma Differ in Immune Infiltration, Immune Checkpoint Molecules, and Prognosis
Cited by: 19
Author(s): Quanwei Zhou, Xuejun Yan, Weidong Liu, Yin Wu, Hongjuan Xu, Damei Cheng, Xingjun Jiang, Chao Ren
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pgen.1007981

Disruption of the Caenorhabditis elegans Integrator complex triggers a non-conventional transcriptional mechanism beyond snRNA genes
Cited by: 29
Author(s): Eva Gómez-Orte, Beatriz Sáenz-Narciso, Angelina Zheleva, Begoña Ezcurra, María de Toro, Rosa López, Irene Gastaca, Hilde Nilsen, María P. Sacristán, Ralf Schnabel, Juan Cabello
Software Mentions: 5
Published: over 7 years ago

10.1155/2021/9998697

Comprehensive Analysis of the Systemic Transcriptomic Alternations and Inflammatory Response during the Occurrence and Progress of COVID-19
Cited by: 12
Author(s): Shaocong Mo, Leijie Dai, Yulin Wang, Biao Song, Zongcheng Yang, Wenchao Gu
Software Mentions: 5
Published: almost 5 years ago

10.1371/journal.pgen.1007406

Systematic identification of factors mediating accelerated mRNA degradation in response to changes in environmental nitrogen
Cited by: 101
Author(s): Darach Miller, Nathan Brandt, David Gresham
Software Mentions: 5
Published: about 8 years ago

10.1155/2021/6648093

Integrated Analysis to Identify a Redox-Related Prognostic Signature for Clear Cell Renal Cell Carcinoma
Cited by: 16
Author(s): Yue Wu, Wa Xian, Huan Feng, Bintao Hu, Bo Liu, Yang Luan, Yajun Ruan, Xiaohui Liu, Zhuo Liu, Jihong Liu, Tao Wang
Software Mentions: 5
Published: about 5 years ago

10.1155/2021/6641838

Analysis of Molecular Mechanism of Erxian Decoction in Treating Osteoporosis Based on Formula Optimization Model
Cited by: 22
Author(s): Lang Yang, Liuyi Fan, Kexin Wang, Yu-peng Chen, Liuqin Liang, Xuemei Qin, Aiping Lü, Peng Cao, Bin Yu, Daogang Guan, Junxiang Peng
Software Mentions: 5
Published: almost 5 years ago

10.3389/fcell.2021.648806

Construction of a Prognostic Immune-Related LncRNA Risk Model for Lung Adenocarcinoma
Cited by: 16
Author(s): Yue Li, Ruoyi Shen, Anqi Wang, Jian Zhao, Jieqi Zhou, Weijie Zhang, Ruochen Zhang, Jianjie Zhu, Zeyi Liu, Jian-An Huang
Software Mentions: 5
Published: about 5 years ago

10.1186/s13148-019-0769-z

DNA methylation associated with postpartum depressive symptoms overlaps findings from a genome-wide association meta-analysis of depression
Cited by: 6
Author(s): Dana M. Lapato, Roxann Roberson‐Nay, Robert M. Kirkpatrick, Bradley T. Webb, Timothy P. York, Patricia A. Kinser
Software Mentions: 5
Published: over 6 years ago

10.7554/eLife.32537

The kinetics of pre-mRNA splicing in the Drosophila genome and the influence of gene architecture
Cited by: 57
Author(s): Athma A. Pai, Telmo Henriques, Kayla McCue, Adam Burkholder, Karen Adelman, Christopher B. Burge
Software Mentions: 5
Published: over 8 years ago

10.3389/fonc.2020.00769

Dysregulated m6A-Related Regulators Are Associated With Tumor Metastasis and Poor Prognosis in Osteosarcoma
Cited by: 54
Author(s): Jianhao Li, Benchen Rao, Jie Yang, Liwen Liu, Mengling Huang, Xin Liu, Guangying Cui, Chao Li, Qicai Han, Hao Yang, Xichun Cui, Ranran Sun
Software Mentions: 5
Published: about 6 years ago

10.3390/ph14020087

Identification of 37 Heterogeneous Drug Candidates for Treatment of COVID-19 via a Rational Transcriptomics-Based Drug Repurposing Approach
Cited by: 4
Author(s): Andrea Gelemanović, Tinka Vidović, Višnja Stepanić, Katarina Trajković
Software Mentions: 5
Published: over 5 years ago

10.7717/peerj.6499

Transcriptional profiling in the livers of rats after hypobaric hypoxia exposure
Cited by: 5
Author(s): Zhenguo Xu, Zhilong Jia, Jianxin Shi, Zeyu Zhang, Xiaojian Gao, Qi Jia, Bohan Liu, Jixuan Liu, Chunlei Liu, Xiaojing Zhao, Kunlun He
Software Mentions: 5
Published: about 7 years ago

10.3389/fonc.2021.637733

Low Expression of ADCY4 Predicts Worse Survival of Lung Squamous Cell Carcinoma Based on Integrated Analysis and Immunohistochemical Verification
Cited by: 3
Author(s): Zhicong Liu, Lixin Ru, Zhenchao Ma
Software Mentions: 5
Published: about 5 years ago

10.3389/fonc.2021.616576

LncRNA FENDRR in Carcinoma-Associated Fibroblasts Regulates the Angiogenesis of Oral Squamous Cell Carcinoma Through the PI3K/AKT Pathway
Cited by: 4
Author(s): Yuming Xu, Erhui Jiang, Zhang Shao, Zhengjun Shang
Software Mentions: 5
Published: almost 5 years ago

10.7554/eLife.63036

Targeted molecular profiling of rare olfactory sensory neurons identifies fate, wiring, and functional determinants
Cited by: 5
Author(s): J. Roman Arguello, Liliane Abuin, Jan Armida, Kaan Mika, Phing Chian Chai, Richard Benton
Software Mentions: 5
Published: over 5 years ago

10.3389/fonc.2021.554779

A Weighted Gene Co-Expression Network Analysis–Derived Prognostic Model for Predicting Prognosis and Immune Infiltration in Gastric Cancer
Cited by: 3
Author(s): Qingchuan Chen, Yongjun Tan, Chao Zhang, Zhe Zhang, Siwei Pan, Wei An, Hui Xu
Software Mentions: 5
Published: over 5 years ago

10.7554/eLife.62857

TAZ-CAMTA1 and YAP-TFE3 alter the TAZ/YAP transcriptome by recruiting the ATAC histone acetyltransferase complex
Cited by: 23
Author(s): Nicole Merritt, Keith Garcia, Dushyandi Rajendran, Zhen‐Yuan Lin, Xiaomeng Zhang, Katrina A. Mitchell, Nicholas Borcherding, Colleen Fullenkamp, Michael S. Chimenti, Anne‐Claude Gingras, Kieran F. Harvey, Munir R. Tanas
Software Mentions: 5
Published: about 5 years ago

10.7717/peerj.7171

Identification of diagnostic markers for major depressive disorder by cross-validation of data from whole blood samples
Cited by: 10
Author(s): Huimei Wang, Mingwei Zhang, Qiqi Xie, Yu Jin, Qi Yan, Qiuyuan Yue
Software Mentions: 5
Published: almost 7 years ago

10.3390/cells9122599

LKB1 Differently Regulates Adipogenesis in Intramuscular and Subcutaneous Adipocytes through Metabolic and Cytokine-Related Signaling Pathways
Cited by: 5
Author(s): Zhonglin Xu, Yanbing Zhou, Qiuyun Nong, Wenjing You, Liyi Wang, Yizhen Wang, Tizhong Shan
Software Mentions: 5
Published: over 5 years ago

10.3389/fonc.2021.705939

Identification of the Effects of Chondroitin Sulfate on Inhibiting CDKs in Colorectal Cancer Based on Bioinformatic Analysis and Experimental Validation
Cited by: 1
Author(s): Yingyu Zhou, Xuyang Li, Yuki Morita, Satoshi Hachimura, Takuya Miyakawa, Sachiko Takahashi, Masaru Tanokura
Software Mentions: 5
Published: almost 5 years ago

10.1038/s41419-020-02948-2

Acyl-CoA thioesterase 1 prevents cardiomyocytes from Doxorubicin-induced ferroptosis via shaping the lipid composition
Cited by: 55
Author(s): Yunchang Liu, Liping Zeng, Yong Yang, Chen Chen, Daowen Wang, Hong Wang
Software Mentions: 5
Published: almost 6 years ago

10.1155/2021/5588429

Crosstalk between RNA-Binding Proteins and Immune Microenvironment Revealed Two RBP Regulatory Patterns with Distinct Immunophenotypes in Periodontitis
Cited by: 0
Author(s): Xing Lü, Guanqun Meng, Tian Chen, Xiaoqi Zhang, Ding Bai, Hui Xu
Software Mentions: 5
Published: almost 5 years ago

10.18632/aging.103809

Landscape of transcription and expression regulated by DNA methylation related to age of donor and cell passage in adipose-derived mesenchymal stem cells
Cited by: 3
Author(s): Guan-Ming Lu, Yong-Xian Rong, Zheng Liang, Dong-Lin Hunag, Yuju Ma, Zhizhai Luo, Fengyao Wu, Xinheng Liu, Yu Liu, Steven Mo, Zhongquan Qi, Hong-Mian Li
Software Mentions: 5
Published: over 5 years ago

10.3389/fcell.2021.641960

Immune-Related Long Non-coding RNA Signature and Clinical Nomogram to Evaluate Survival of Patients Suffering Esophageal Squamous Cell Carcinoma
Cited by: 14
Author(s): Tong Zhu, Zhifeng Ma, Haiyong Wang, Desheng Wei, Bin Wang, Chu Zhang, Linhai Fu, Zhupeng Li, Guangmao Yu
Software Mentions: 5
Published: over 5 years ago

10.3389/fcell.2021.633607

Development and Validation of a Hypoxia-Associated Prognostic Signature Related to Osteosarcoma Metastasis and Immune Infiltration
Cited by: 35
Author(s): Yucheng Fu, Qiyuan Bao, Zhuochao Liu, Guoyu He, Junxiang Wen, Qi Liu, Yanguang Xu, Zhijian Jin, Weibin Zhang
Software Mentions: 5
Published: about 5 years ago

10.7717/peerj.11321

Identification of key genes and biological processes contributing to colitis associated dysplasia in ulcerative colitis
Cited by: 5
Author(s): Di Zhang, Pengguang Yan, Tian Han, Xiaoyun Cheng, Jingnan Li
Software Mentions: 5
Published: about 5 years ago

10.7717/peerj.6548

Identification of an eight-gene signature for survival prediction for patients with hepatocellular carcinoma based on integrated bioinformatics analysis
Cited by: 41
Author(s): Guo-jie Qiao, Liang Chen, Junzhen Wu, Li Zhouri
Software Mentions: 5
Published: about 7 years ago

10.3389/fcell.2021.648331

Fibrillarin-GFP Facilitates the Identification of Meiotic Competent Oocytes
Cited by: 6
Author(s): Ting Wang, Jie Na
Software Mentions: 5
Published: about 5 years ago

10.1186/s12885-019-6249-1

Comprehensive transcriptomic analyses of tissue, serum, and serum exosomes from hepatocellular carcinoma patients
Cited by: 38
Author(s): Robin Mjelle, Simona Dima, Nicolae Bacalbaşa, Konika Chawla, Andrei Sorop, Dana Cucu, Vlad Herlea, Pål Sætrom, Irinel Popescu
Software Mentions: 5
Published: over 6 years ago

10.3389/fonc.2021.668595

Prognostic and Predicted Significance of FENDRR in Colon and Rectum Adenocarcinoma
Cited by: 2
Author(s): Fan Yang, Siyu Sun, Fei Yang
Software Mentions: 5
Published: over 4 years ago

10.3389/fcell.2021.723721

Identification of the Immune-Related Genes in Tumor Microenvironment That Associated With the Recurrence of Head and Neck Squamous Cell Carcinoma
Cited by: 6
Author(s): Chengcheng Liu, Wenwen Qi, Nianqiao Gong, Fenlu Zhu, Ran Xu, Zhaogang Teng, Fanxing Xu, Ya‐Zhen Qin, Mingqiu Zhao, Xiaoming Li, Ming Xia
Software Mentions: 5
Published: almost 5 years ago

10.1136/jitc-2020-001657

Regorafenib enhances antitumor immunity via inhibition of p38 kinase/Creb1/Klf4 axis in tumor-associated macrophages
Cited by: 52
Author(s): Da-Liang Ou, Chia Wei Chen, Chia‐Lang Hsu, Chih‐Hung Chung, Zi Rui Feng, Bin Shyun Lee, Ann Lii Cheng, Muh Hwa Yang, Chiun Hsu
Software Mentions: 5
Published: over 5 years ago

10.1186/s12885-021-08390-7

Identification of prognostic markers for hepatocellular carcinoma based on the epithelial-mesenchymal transition-related gene BIRC5
Cited by: 13
Author(s): Rongzhong Xu, Lin Lei, Bo Zhang, Jian Wang, Fanchen Zhao, Xiaolin Liu, Yiping Li, Yan Li
Software Mentions: 5
Published: about 5 years ago

10.7150/ijms.39056

Identification of gene expression profiles and immune cell infiltration signatures between low and high tumor mutation burden groups in bladder cancer
Cited by: 33
Author(s): Zonglong Wu, Mu-Ru Wang, Qinggang Liu, Yaxiao Liu, Ke-Cheng Zhu, Lipeng Chen, Hongda Guo, Yan Li, Benkang Shi
Software Mentions: 5
Published: over 6 years ago

10.7717/peerj.8312

Identification and validation of a three-gene signature as a candidate prognostic biomarker for lower grade glioma
Cited by: 26
Author(s): Kai Xiao, Qing Liu, Gang Peng, Jun Su, Chaoying Qin, Xiangyu Wang
Software Mentions: 5
Published: over 6 years ago

10.18632/aging.102841

Identification of biomarkers related to CD8+ T cell infiltration with gene co-expression network in clear cell renal cell carcinoma
Cited by: 47
Author(s): Jiaxing Lin, Meng Yu, Xiao Xu, Yutao Wang, Haotian Xing, Jing An, Jieping Yang, Chaozhi Tang, Dan Sun, Yuyan Zhu
Software Mentions: 5
Published: over 6 years ago

10.1155/2019/9651380

Integrated Bioinformatics Analysis of Hub Genes and Pathways in Anaplastic Thyroid Carcinomas
Cited by: 14
Author(s): Xueren Gao, Jianguo Wang, Shulong Zhang
Software Mentions: 5
Published: over 7 years ago

10.7717/peerj.11342

Centromere protein N may be a novel malignant prognostic biomarker for hepatocellular carcinoma
Cited by: 6
Author(s): Qingqing Wang, Xiaoyan Yu, Zhewen Zheng, Fengxia Chen, Ningning Yang, Youwen Zhou
Software Mentions: 5
Published: about 5 years ago

10.3389/fonc.2019.01147

Clinical and Expression Significance of AKT1 by Co-expression Network Analysis in Endometrial Cancer
Cited by: 19
Author(s): Xiao Huo, Hengzi Sun, Qian Liu, Xiangwen Ma, Peng Peng, Mei Yu, Ying Zhang, Dongyan Cao, Keng Shen
Software Mentions: 5
Published: over 6 years ago

10.7717/peerj.8128

Identification of prognostic gene signature associated with microenvironment of lung adenocarcinoma
Cited by: 57
Author(s): Yufeng Cheng, Hongwen Ma, Yuting Zhou
Software Mentions: 5
Published: over 6 years ago

10.3389/fcell.2021.684643

Development of an Individualized Ubiquitin Prognostic Signature for Clear Cell Renal Cell Carcinoma
Cited by: 5
Author(s): Yue Wu, Xi Zhang, Wa Xian, Huan Feng, Bintao Hu, Zhiyao Deng, Bo Liu, Yang Luan, Yajun Ruan, Xiaohui Liu, Zhuo Liu, Jihong Liu, Tao Wang
Software Mentions: 5
Published: almost 5 years ago

10.3389/fnut.2021.675935

Assessing the Contribution of Relative Macrophage Frequencies to Subcutaneous Adipose Tissue
Cited by: 1
Author(s): Marianthi Kalafati, Michael Lenz, Gökhan Ertaylan, Ilja C. W. Arts, Chris T. Evelo, Marleen M.J. van Greevenbroek, Ellen E. Blaak, Michiel E. Adriaens, Martina Kutmon
Software Mentions: 5
Published: about 5 years ago

10.1038/s41398-019-0384-y

Analysis of whole genome-transcriptomic organization in brain to identify genes associated with alcoholism
Cited by: 63
Author(s): Manav Kapoor, Jen Chyong Wang, Sean P. Farris, Yunlong Liu, Jeanette N. McClintick, Ishaan Gupta, Jacquelyn L. Meyers, Sarah Bertelsen, Michael J. Chao, John I. Nürnberger, Jay A. Tischfield, Oscar Harari, Zeran Li, Victor Hesselbrock, Lance O. Bauer, Towfique Raj, Bernice Porjesz, Arpana Agrawal, Tatiana Foroud, Howard J. Edenberg, R. Dayne Mayfield, Alison Goate
Software Mentions: 5
Published: over 7 years ago

10.1155/2020/5217405

Based on Network Pharmacology to Explore the Molecular Targets and Mechanisms of Gegen Qinlian Decoction for the Treatment of Ulcerative Colitis
Cited by: 43
Author(s): Meiqi Wei, He Li, Qifang Li, Yi Qiao, Qun Ma, Ruining Xie, Rong Wang, Yuan Liu, Chao Wei, Bingbing Li, Canlei Zheng, Bing Sun, Bin Yu
Software Mentions: 5
Published: over 5 years ago

10.7150/thno.63416

Mapping the landscape of synthetic lethal interactions in liver cancer
Cited by: 7
Author(s): Chen Yang, Yuchen Guo, Ruolan Qian, Yi‐Wen Huang, Linmeng Zhang, Jun Wang, Xiaowen Huang, Zhicheng Liu, Wenxin Qin, Cun Wang, Huimin Chen, Xuhui Ma, Dayong Zhang
Software Mentions: 5
Published: over 5 years ago

10.3389/fneur.2021.633390

Development of a Prognostic Five-Gene Signature for Diffuse Lower-Grade Glioma Patients
Cited by: 3
Author(s): Qiang Zhang, Wenhao Liu, Shunbin Luo, Fuchen Xie, Xiaojun Liu, Ren-ai Xu, Lixi Chen, Zhi-Lin Su
Software Mentions: 5
Published: almost 5 years ago

10.1111/1759-7714.14002

Significance of tumor mutation burden and immune infiltration in thymic epithelial tumors
Cited by: 8
Author(s): Zi-Ming Wang, Qiang Xu, David Kaul, Mahmoud Ismail, Harun Badakhshi
Software Mentions: 5
Published: about 5 years ago

10.1186/s13287-021-02508-1

Transcriptome-wide m6A methylome during osteogenic differentiation of human adipose-derived stem cells
Cited by: 4
Author(s): Weihao Sun, Yidan Song, Kai Xia, Liyuan Yu, Xinqi Huang, Zhihe Zhao, Jun Liu
Software Mentions: 5
Published: almost 5 years ago

10.1155/2019/2506843

Deciphering Immune-Associated Genes to Predict Survival in Clear Cell Renal Cell Cancer
Cited by: 30
Author(s): Daixing Hu, Mi Zhou, Xin Zhu
Software Mentions: 5
Published: over 6 years ago

10.7150/ijbs.45050

A Novel Ferroptosis-related Gene Signature for Overall Survival Prediction in Patients with Hepatocellular Carcinoma
Cited by: 342
Author(s): Jie Liang, De-Shen Wang, Haocheng Lin, Xiuxing Chen, Hui Yang, Yun Zheng, Yuhong Li
Software Mentions: 5
Published: over 6 years ago

10.3389/fcell.2021.736540

Characterization of Molecular Heterogeneity Associated With Tumor Microenvironment in Clear Cell Renal Cell Carcinoma to Aid Immunotherapy
Cited by: 9
Author(s): Weimin Zhong, Yinan Li, Yazhou Yuan, Hongbin Zhong, Chaoqun Huang, Jiwei Huang, Yao Lin, Jian Huang
Software Mentions: 5
Published: over 4 years ago

10.3389/fcell.2021.641987

Timing Does Matter: Nerve-Mediated HDAC1 Paces the Temporal Expression of Morphogenic Genes During Axolotl Limb Regeneration
Cited by: 3
Author(s): Mu-Hui Wang, Chih‐Cheng Hsu, Cheng‐Hsun Wu, Ling-Ling Chiou, Yi-Tzang Tsai, Hsuan-Shu Lee, Shau-Ping Lin
Software Mentions: 5
Published: about 5 years ago

10.3390/v13061129

Evidence of Transcriptional Shutoff by Pathogenic Viral Haemorrhagic Septicaemia Virus in Rainbow Trout
Cited by: 4
Author(s): Irene Cano, Eduarda M. Santos, Karen Moore, Audrey Farbos, Ronny van Aerle
Software Mentions: 5
Published: about 5 years ago

10.7717/peerj.8390

Identification of key biomarkers and immune infiltration in the synovial tissue of osteoarthritis by bioinformatics analysis
Cited by: 46
Author(s): Weisong Cai, Haohuan Li, Yubiao Zhang, Guoge Han
Software Mentions: 5
Published: over 6 years ago

10.1186/s12885-020-06784-7

Right and left-sided colon cancers - specificity of molecular mechanisms in tumorigenesis and progression
Cited by: 45
Author(s): Kavitha Mukund, Natalia Syulyukina, Sonia Ramamoorthy, Shankar Subramaniam
Software Mentions: 5
Published: about 6 years ago

10.3389/fgene.2021.702102

Construction and Validation of an Immune-Based Prognostic Model for Pancreatic Adenocarcinoma Based on Public Databases
Cited by: 3
Author(s): Miaobin Mao, Hong-Jian Ling, Yu‐Ping Lin, Yanling Chen, Benhua Xu, Rong Zheng
Software Mentions: 5
Published: almost 5 years ago

10.7717/peerj.12125

Identification of immune related cells and crucial genes in the peripheral blood of ankylosing spondylitis by integrated bioinformatics analysis
Cited by: 12
Author(s): Yang Zheng, Bingbing Cai, Conglin Ren, Haipeng Xu, Weibin Du, Yinglong Wu, Fei-Jan Lin, Helou Zhang, Renfu Quan
Software Mentions: 5
Published: almost 5 years ago

10.1155/2020/8853348

Systematic Identification of Key Functional Modules and Genes in Gastric Cancer
Cited by: 2
Author(s): Rui Wu, Jin‐Yu Sun, Lili Zhao, Zhining Fan, Cheng Yang
Software Mentions: 5
Published: over 5 years ago

10.18632/aging.102819

Expression and prognostic value of long non-coding RNA H19 in glioma via integrated bioinformatics analyses
Cited by: 33
Author(s): Yi Xiao, Zi-peng Zhu, LI Jian-xiong, Jie Yao, Haitao Jiang, Ran Ran, Xueyuan Li, Zhiqiang Li
Software Mentions: 5
Published: over 6 years ago

10.3389/fgene.2018.00491

Dynamic Changes in the Global MicroRNAome and Transcriptome Identify Key Nodes Associated With Ovarian Development in Chickens
Cited by: 12
Author(s): Wenwen Wang, Keliang Wu, Meiting Jia, Siyuan Sun, Kang Li, Qin Zhang, Hui Tang
Software Mentions: 5
Published: over 7 years ago

10.1038/s41392-020-00457-4

Longitudinal transcriptome analyses show robust T cell immunity during recovery from COVID-19
Cited by: 55
Author(s): Hong Zheng, Min Xu, Cui Xian Yang, Ren Rong Tian, Mi Zhang, Jian Jian Li, Xi Cheng Wang, Zhao Ding, Gui Mei Li, Xiaolu Li, Yu He, Xing-qi Dong, Yong Yao, Yong Zheng
Software Mentions: 5
Published: over 5 years ago

10.1038/s41385-019-0228-3

Commensal microbiota drive the functional diversification of colon macrophages
Cited by: 62
Author(s): Byunghyun Kang, Luigi J. Alvarado, Teayong Kim, Michael L. Lehmann, Hyeseon Cho, Jianping He, Peng Li, Bong-Hyun Kim, André Larochelle, Brian L. Kelsall
Software Mentions: 5
Published: over 6 years ago

Projects: bioconductor: clusterProfiler

Science Score: 75/100

Bonuses:

Penalties:

Papers Mentioning clusterProfiler 2,223