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An open API service providing mapping between scientific papers and software projects that are mentioned in them.

Projects: bioconductor: SpectralTAD

https://packages.ecosyste.ms/registries/bioconductor.org/packages/SpectralTAD

SpectralTAD: Hierarchical TAD detection using spectral clustering
1 version
Latest release: almost 2 years ago
1 dependent package
5,711 downloads total

Enhanced Analysis
Educational Contributors: [email protected] [email protected] [email protected]
Repository Activity:
Repository Owner: Dozmorov Lab (organization)
Genomics, bionformatics, computational biology, 3D genome, Hi-C Academic
README Analysis: DOI Found
Science Score: 100/100
Starting Score: 100 points
Bonuses:
  • +60 Educational commit emails
    3 contributors with educational email addresses
  • +20 Academic repository owner
    Repository owned by academic institution
  • +15 Institutional repository owner
    Repository owned by research institution
  • +2 Science terms in README
    1 scientific terms found in README
  • +10 DOI references
    1 DOI references found in README
Penalties:
  • -10 No science terms in description
    No scientific terms found in description
Very Likely Science (100)

Papers Mentioning SpectralTAD 5

10.1093/bioinformatics/btaa555
Benchmark of software tools for prokaryotic chromosomal interaction domain identification
Cited by: 3
Author(s): Mikhail D. Magnitov, Veronika S Kuznetsova, Sergey V. Ulianov, Sergey V. Razin, Alexander Tyakht
Software Mentions: 8
Published: almost 5 years ago
10.1186/s12859-020-03652-w
SpectralTAD: an R package for defining a hierarchy of topologically associated domains using spectral clustering
Cited by: 22
Author(s): Kellen Garrison Cresswell, John C. Stansfield, Mikhail G. Dozmorov
Software Mentions: 7
Published: about 5 years ago
10.1186/s13059-021-02435-7
DeTOKI identifies and characterizes the dynamics of chromatin TAD-like domains in a single cell
Cited by: 15
Author(s): Xiao Li, Guangjie Zeng, Angsheng Li, Zhihua Zhang
Software Mentions: 6
Published: about 4 years ago
10.3389/fgene.2020.00158
TADCompare: An R Package for Differential and Temporal Analysis of Topologically Associated Domains
Cited by: 32
Author(s): Kellen Garrison Cresswell, Mikhail G. Dozmorov
Software Mentions: 4
Published: over 5 years ago
10.1186/s12859-020-03710-3
Correction to: SpectralTAD: an R package for defining a hierarchy of topologically associated domains using spectral clustering
Cited by: 1
Author(s): Kellen Garrison Cresswell, John C. Stansfield, Mikhail G. Dozmorov
Software Mentions: 1
Published: almost 5 years ago