Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: bioconductor: SpectralTAD
https://packages.ecosyste.ms/registries/bioconductor.org/packages/SpectralTAD
SpectralTAD: Hierarchical TAD detection using spectral clustering
1 version
Latest release: 12 months ago
1 dependent package
5,711 downloads total
Papers Mentioning SpectralTAD 5
10.1093/bioinformatics/btaa555
Benchmark of software tools for prokaryotic chromosomal interaction domain identificationCited by: 3
Author(s): Mikhail D. Magnitov, Veronika S Kuznetsova, Sergey V. Ulianov, Sergey V. Razin, Alexander Tyakht
Software Mentions: 8
Published: about 4 years ago
10.1186/s12859-020-03652-w
SpectralTAD: an R package for defining a hierarchy of topologically associated domains using spectral clusteringCited by: 22
Author(s): Kellen Garrison Cresswell, John C. Stansfield, Mikhail G. Dozmorov
Software Mentions: 7
Published: about 4 years ago
10.1186/s13059-021-02435-7
DeTOKI identifies and characterizes the dynamics of chromatin TAD-like domains in a single cellCited by: 15
Author(s): Xiao Li, Guangjie Zeng, Angsheng Li, Zhihua Zhang
Software Mentions: 6
Published: about 3 years ago
10.3389/fgene.2020.00158
TADCompare: An R Package for Differential and Temporal Analysis of Topologically Associated DomainsCited by: 32
Author(s): Kellen Garrison Cresswell, Mikhail G. Dozmorov
Software Mentions: 4
Published: over 4 years ago
10.1186/s12859-020-03710-3
Correction to: SpectralTAD: an R package for defining a hierarchy of topologically associated domains using spectral clusteringCited by: 1
Author(s): Kellen Garrison Cresswell, John C. Stansfield, Mikhail G. Dozmorov
Software Mentions: 1
Published: about 4 years ago