Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/s12859-020-03652-w

https://doi.org/10.1186/s12859-020-03652-w

SpectralTAD: an R package for defining a hierarchy of topologically associated domains using spectral clustering

Cited by: 22
Author(s): Kellen Garrison Cresswell, John C. Stansfield, Mikhail G. Dozmorov
Published: over 4 years ago

Software Mentions 7

bioconductor: LOLA
Locus overlap analysis for enrichment of genomic ranges
Papers that mentioned: 56
bioconductor: rGREAT
GREAT Analysis - Functional Enrichment on Genomic Regions
Papers that mentioned: 5
bioconductor: SpectralTAD
SpectralTAD: Hierarchical TAD detection using spectral clustering
Papers that mentioned: 5
cran: HiCseg
Detection of domains in HiC data
Papers that mentioned: 17
cran: MASS
Support Functions and Datasets for Venables and Ripley's MASS
Papers that mentioned: 2,353
cran: TopDom
An Efficient and Deterministic Method for Identifying Topological Domains in Genomes
Papers that mentioned: 31
pypi: HiCExplorer
Set of programs to process, analyze and visualize Hi-C data
Papers that mentioned: 33