Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Papers: 10.1186/s12859-020-03652-w
https://doi.org/10.1186/s12859-020-03652-w
SpectralTAD: an R package for defining a hierarchy of topologically associated domains using spectral clustering
Cited by: 22
Author(s): Kellen Garrison Cresswell, John C. Stansfield, Mikhail G. Dozmorov
Published: over 4 years ago
Software Mentions 7
bioconductor: LOLA
Locus overlap analysis for enrichment of genomic rangesPapers that mentioned: 56
bioconductor: rGREAT
GREAT Analysis - Functional Enrichment on Genomic RegionsPapers that mentioned: 5
bioconductor: SpectralTAD
SpectralTAD: Hierarchical TAD detection using spectral clusteringPapers that mentioned: 5
cran: MASS
Support Functions and Datasets for Venables and Ripley's MASSPapers that mentioned: 2,353
cran: TopDom
An Efficient and Deterministic Method for Identifying Topological Domains in GenomesPapers that mentioned: 31
pypi: HiCExplorer
Set of programs to process, analyze and visualize Hi-C dataPapers that mentioned: 33