Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1093/bioinformatics/btaa555

https://doi.org/10.1093/bioinformatics/btaa555

Benchmark of software tools for prokaryotic chromosomal interaction domain identification

Cited by: 3
Author(s): Mikhail D. Magnitov, Veronika S Kuznetsova, Sergey V. Ulianov, Sergey V. Razin, Alexander Tyakht
Published: about 4 years ago

Software Mentions 8

bioconductor: SpectralTAD

SpectralTAD: Hierarchical TAD detection using spectral clustering
Papers that mentioned: 5

cran: HiCseg

Detection of domains in HiC data
Papers that mentioned: 17

cran: spectral

Common Methods of Spectral Data Analysis
Papers that mentioned: 6

cran: STAR

Spike Train Analysis with R
Papers that mentioned: 5,759

cran: TopDom

An Efficient and Deterministic Method for Identifying Topological Domains in Genomes
Papers that mentioned: 31

pypi: EAST

Text analysis library based on the Annotated Suffix Tree method
Papers that mentioned: 95

pypi: HiCExplorer

Set of programs to process, analyze and visualize Hi-C data
Papers that mentioned: 33

pypi: spectral

Spectral Python (SPy) is a Python module for hyperspectral image processing.
Papers that mentioned: 6