Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: bioconductor: Linnorm
https://packages.ecosyste.ms/registries/bioconductor.org/packages/Linnorm
Linear model and normality based normalization and transformation method (Linnorm)
1 version
Latest release: about 1 year ago
1 dependent package
18,615 downloads total
Papers Mentioning Linnorm 11
10.20517/jtgg.2020.51
Toward uncharted territory of cellular heterogeneity: advances and applications of single-cell RNA-seqCited by: 2
Author(s): Brandon Lieberman, Meena Kusi, Chia-Nung Hung, Chih-Wei Chou, Ning He, Yen‐Yi Ho, Josephine A. Taverna, Tim Hui-Ming Huang, Chun-Liang Chen
Software Mentions: 18
Published: almost 5 years ago
10.12688/f1000research.15809.2
Comparison of clustering tools in R for medium-sized 10x Genomics single-cell RNA-sequencing dataCited by: 90
Author(s): Saskia Freytag, Tian Li, Ingrid Lönnstedt, Milica Ng, Melanie Bahlo
Software Mentions: 12
Published: almost 6 years ago
10.3389/fgene.2019.00629
Single-Cell RNA Sequencing-Based Computational Analysis to Describe Disease HeterogeneityCited by: 23
Author(s): Tao Zeng, Hao Dai
Software Mentions: 10
Published: over 5 years ago
10.3389/fgene.2019.01253
Benchmark and Parameter Sensitivity Analysis of Single-Cell RNA Sequencing Clustering MethodsCited by: 56
Author(s): Monika Krzak, Yordan P. Raykov, Alexis Boukouvalas, Luisa Cutillo, Claudia Angelini
Software Mentions: 9
Published: almost 5 years ago
10.3390/genes11050532
Sparsity-Penalized Stacked Denoising Autoencoders for Imputing Single-Cell RNA-seq DataCited by: 9
Author(s): Weilai Chi, Minghua Deng
Software Mentions: 9
Published: over 4 years ago
10.3389/fgene.2020.00041
Normalization Methods on Single-Cell RNA-seq Data: An Empirical SurveyCited by: 46
Author(s): Nicholas Lytal, Ran Di, Lingling An
Software Mentions: 8
Published: almost 5 years ago
10.1186/s12859-020-03883-x
NDRindex: a method for the quality assessment of single-cell RNA-Seq preprocessing dataCited by: 0
Author(s): Ruiyu Xiao, Guoshan Lu, Wanqian Guo, Shuilin Jin
Software Mentions: 4
Published: almost 4 years ago
10.1111/jcmm.16249
A novel hypoxia gene signature indicates prognosis and immune microenvironments characters in patients with hepatocellular carcinomaCited by: 13
Author(s): Qiangnu Zhang, Liang Qiao, Juan Liao, Quan Liu, Pengyu Liu, Liping Liu
Software Mentions: 4
Published: almost 4 years ago
10.18632/aging.202723
Hypoxia associated multi-omics molecular landscape of tumor tissue in patients with hepatocellular carcinomaCited by: 7
Author(s): Qiangnu Zhang, Liang Qiao, Quan Liu, Xiangpan Kong, Jun Hu, Weibin Hu, Zongze Wu, Mingyue Li, Liping Liu
Software Mentions: 3
Published: over 3 years ago
10.1093/database/baaa052
Autophagy and Tumor Database: ATdb, a novel database connecting autophagy and tumorCited by: 11
Author(s): Kelie Chen, Dexin Yang, Fan Zhao, Shengchao Wang, Ye Yao, Wenjie Sun, H. Lu, Zhi Ruan, Jun Xu, Tianru Wang, Guang Lu, Liming Wang, Yu Shi, Honghe Zhang, Hanjiang Wu, Weiguo Lü, Han‐Ming Shen, Dajing Xia, Yihua Wu
Software Mentions: 2
Published: almost 5 years ago
10.1186/s13046-021-01874-1
Single‐cell RNA sequencing in cancer researchCited by: 104
Author(s): Yijie Zhang, Dan Wang, Peng Miao, Le Tang, Jiawei Ouyang, Fang Xiong, Can Guo, Yue Tang, Yujuan Zhou, Qianjin Liao, Xu Wu, Hui Wang, Jianjun Yu, Yong Li, Xiaoling Li, Guiyuan Li, Zhaoyang Zeng, Yixin Tan, Wei Xiong
Software Mentions: 2
Published: over 3 years ago