Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.3389/fgene.2020.00041

https://doi.org/10.3389/fgene.2020.00041

Normalization Methods on Single-Cell RNA-seq Data: An Empirical Survey

Cited by: 46
Author(s): Nicholas Lytal, Ran Di, Lingling An
Published: almost 5 years ago

Software Mentions 8

bioconductor: BASiCS
Bayesian Analysis of Single-Cell Sequencing data
Papers that mentioned: 21
bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
bioconductor: edgeR
Empirical Analysis of Digital Gene Expression Data in R
Papers that mentioned: 6,568
bioconductor: Linnorm
Linear model and normality based normalization and transformation method (Linnorm)
Papers that mentioned: 11
bioconductor: SCnorm
Normalization of single cell RNA-seq data
Papers that mentioned: 15
bioconductor: scran
Methods for Single-Cell RNA-Seq Data Analysis
Papers that mentioned: 113
cran: Rtsne
T-Distributed Stochastic Neighbor Embedding using a Barnes-Hut Implementation
Papers that mentioned: 255
cran: Seurat
Tools for Single Cell Genomics
Papers that mentioned: 1,512