bioconductor: GSVA | Projects | Ecosyste.ms: Papers

10.3389/fgene.2021.650416

Ferroptosis-Related Gene-Based Prognostic Model and Immune Infiltration in Clear Cell Renal Cell Carcinoma
Cited by: 13
Author(s): Guojiang Zhao, Zonglong Wu, Liyuan Ge, Fusheng Yang, Kai Hong, Shudong Zhang, Lulin Ma
Software Mentions: 5
Published: over 3 years ago

10.3389/fgene.2021.721252

Antioxidant Gene Signature Impacts the Immune Infiltration and Predicts the Prognosis of Kidney Renal Clear Cell Carcinoma
Cited by: 11
Author(s): Xueting Ren, Li Ma, Nan Wang, Ruina Zhou, Jianhua Wu, Xin Xie, Hao Zhang, Di Liu, Xiuli Ma, Chengxue Dang, Huafeng Kang, Zhangjian Zhou
Software Mentions: 5
Published: over 3 years ago

10.3389/fcell.2021.662707

PLXNC1: A Novel Potential Immune-Related Target for Stomach Adenocarcinoma
Cited by: 12
Author(s): Zhizhan Ni, Chenshen Huang, Hongmei Zhao, Jinzhe Zhou, Muren Hu, Qing Chen, Bujun Ge, Qi Huang
Software Mentions: 5
Published: over 3 years ago

10.1038/s41419-021-03644-5

Eradication of specific donor-dependent variations of mesenchymal stem cells in immunomodulation to enhance therapeutic values
Cited by: 19
Author(s): Chunxue Zhang, Liqiang Zhou, Zhen Wang, Wenxia Gao, Wei Chen, Huina Zhang, Bo Jing, Zhu Xu, Lei Chen, Changhong Zheng, Kaiyan Shi, Wu Li, Liming Cheng, Kunshan Zhang, Yi Sun
Software Mentions: 5
Published: over 3 years ago

10.1038/s41388-021-02005-y

Intron retention-induced neoantigen load correlates with unfavorable prognosis in multiple myeloma
Cited by: 19
Author(s): Chuanpeng Dong, Annamaria Cesarano, Giuseppe Bombaci, Jill L. Reiter, Christina Y. Yu, Yue Wang, Zhaoyang Jiang, Mohammad Abu Zaid, Kun Huang, Xiongbin Lu, Brian A Walker, Fabiana Perna, Yunlong Liu
Software Mentions: 5
Published: about 3 years ago

10.1371/journal.pone.0222552

Systems biology analysis of publicly available transcriptomic data reveals a critical link between AKR1B10 gene expression, smoking and occurrence of lung cancer
Cited by: 8
Author(s): J Carlos Angulo, Eduardo R. Fukutani, Luís A. B. Cruz, María B. Arriaga, João Victor Lima, Bruno B. Andrade, Artur T. L. Queiroz, Kiyoshi F. Fukutani
Software Mentions: 5
Published: over 4 years ago

10.1155/2021/5523749

Landscape of Immune Microenvironment in Epithelial Ovarian Cancer and Establishing Risk Model by Machine Learning
Cited by: 4
Author(s): Shiyi Liu, Ronghui Zhu, Zitao Wang, Wei Tan, Li Zhang, Yanqing Wang, Fangfang Dai, Mengqin Yuan, Y. Zheng, Dongyong Yang, Feiyan Wang, Xian Shu, Jian‐Qing He, Yu-Wei Zhang, Mali Wu, Zhanfeng Deng, Min Hu, Yanxiang Cheng, Yeqiang Liu
Software Mentions: 5
Published: about 3 years ago

10.1186/s12957-021-02367-3

Comprehensive analysis of angiogenesis subtype of squamous cell carcinoma
Cited by: 3
Author(s): Fanglu Qin, Sheng-hua Lin, Kun Deng, Junqi Qin, Zhanyu Xu, Liqiang Yuan, Jiangbo Wei, Yu Sun, Tiaozhan Zheng, Shikang Li
Software Mentions: 5
Published: about 3 years ago

10.1155/2020/2450569

Infiltration of Immunoinflammatory Cells and Related Chemokine/Interleukin Expression in Different Gastric Immune Microenvironments
Cited by: 13
Author(s): Ang Wang, Siru Nie, Zhi Lv, Jing Wen, Yuan Yuan
Software Mentions: 5
Published: almost 4 years ago

10.1155/2021/5588429

Crosstalk between RNA-Binding Proteins and Immune Microenvironment Revealed Two RBP Regulatory Patterns with Distinct Immunophenotypes in Periodontitis
Cited by: 0
Author(s): Xing Lü, Guanqun Meng, Tian Chen, Xiaoqi Zhang, Ding Bai, Hui Xu
Software Mentions: 5
Published: over 3 years ago

10.3390/cancers12103054

A Methylation-Based Reclassification of Bladder Cancer Based on Immune Cell Genes
Cited by: 26
Author(s): Qizhan Luo, Thomas-Alexander Vögeli
Software Mentions: 5
Published: about 4 years ago

10.1093/database/baaa012

CancerLivER: a database of liver cancer gene expression resources and biomarkers
Cited by: 19
Author(s): Harpreet Kaur, Sherry Bhalla, Dilraj Kaur, Gajendra P. S. Raghava
Software Mentions: 5
Published: almost 5 years ago

10.3389/fcell.2020.608044

Loss of G-Protein Pathway Suppressor 2 Promotes Tumor Growth Through Activation of AKT Signaling
Cited by: 10
Author(s): Stefanie Chan, Emma Smith, Yuan Gao, Julian Kwan, Benjamin Blum, Andrew Tilston-Lünel, Isabella Turcinovic, Xaralabos Varelas, Maria Dafne Cardamone, Stefano Monti, Andrew Emili, Valentina Perissi
Software Mentions: 5
Published: almost 4 years ago

10.3389/fcell.2021.711348

Characterization of Molecular Subtypes in Head and Neck Squamous Cell Carcinoma With Distinct Prognosis and Treatment Responsiveness
Cited by: 10
Author(s): Pei Zhang, Shue Li, Tingting Zhang, Fengzhen Cui, Jihua Shi, Fengbo Zhao, Xia Sheng
Software Mentions: 5
Published: about 3 years ago

10.1002/1878-0261.12706

Ribonucleotide reductase small subunit M2 is a master driver of aggressive prostate cancer
Cited by: 17
Author(s): Ying Z. Mazzu, Joshua Armenia, Subhiksha Nandakumar, Goutam Chakraborty, Yuki Yoshikawa, Lina Jehane, Gwo‐Shu Mary Lee, Mohammad Atiq, Nabeela Khan, Nikolaus Schultz, Philip W. Kantoff
Software Mentions: 5
Published: over 4 years ago

10.3389/fcell.2021.624711

Single-Cell RNA Sequencing With Combined Use of Bulk RNA Sequencing to Reveal Cell Heterogeneity and Molecular Changes at Acute Stage of Ischemic Stroke in Mouse Cortex Penumbra Area
Cited by: 22
Author(s): Kang Guo, Jianing Luo, Dayun Feng, Lin Wu, Xin Wang, Xia Li, Kai Tao, Xun Wu, Wenxing Cui, Yijie He, Bing Wang, Zhenwei Zhao, Zhiguo Zhang
Software Mentions: 5
Published: over 3 years ago

10.1074/mcp.TIR118.001251

MOGSA: Integrative Single Sample Gene-set Analysis of Multiple Omics Data
Cited by: 49
Author(s): Chen Meng, Azfar Basunia, Bjoern Peters, Amin Moghaddas Gholami, Bernhard Küster, Aedín C. Culhane
Software Mentions: 5
Published: over 5 years ago

10.3389/fimmu.2021.711980

Characterization of Organ-Specific Regulatory B Cells Using Single-Cell RNA Sequencing
Cited by: 7
Author(s): Si Yu Yang, Jie Long, Meng Huang, Pan Luo, Zhen Bian, Ya Xu, Chengbo Wang, Shu Yang, Li Liang, Carlo Selmi, M. Eric Gershwin, Zhi Bin Zhao, Zhe Xiong Lian
Software Mentions: 5
Published: about 3 years ago

10.18632/aging.102923

Integrative analysis of DNA methylation and gene expression reveals distinct hepatocellular carcinoma subtypes with therapeutic implications
Cited by: 10
Author(s): Xiaowen Huang, Chen Yang, Jilin Wang, Tiantian Sun, Hua Xiong
Software Mentions: 5
Published: over 4 years ago

10.3389/fcell.2021.727935

Uncovering the Association Between m5C Regulator-Mediated Methylation Modification Patterns and Tumour Microenvironment Infiltration Characteristics in Hepatocellular Carcinoma
Cited by: 13
Author(s): Xinyu Gu, Haibo Zhou, Qingfei Chu, Qiuxian Zheng, Jing Wang, Haihong Zhu
Software Mentions: 5
Published: about 3 years ago

10.1002/cam4.2312

Characterization of transcriptome profile and clinical features of a novel immunotherapy target CD204 in diffuse glioma
Cited by: 19
Author(s): Yanggang Yuan, Qitai Zhao, Songfeng Zhao, Penghua Zhang, Haibiao Zhao, Zeyun Li, Yue Du, Xin Tian, Jingli Lü
Software Mentions: 5
Published: over 5 years ago

10.7150/thno.60031

Astrocytic YAP protects the optic nerve and retina in an experimental autoimmune encephalomyelitis model through TGF-β signaling
Cited by: 27
Author(s): Wei Qian, Xuemeng Miao, Jingjing Zhang, Ludan Xiang, Xiuchun Li, Xiaomei Bao, Siyu Du, Mianxian Wang, Shuangda Miao, Yiren Fan, Wei Wang, Xingxing Xu, Xiya Shen, Dongren Yang, Xiwu Wang, Yuanyuan Fang, Li‐Xin Hu, Xuyi Pan, Haoru Dong, Hui Wang, Ying Wang, Jia Li, Zhihui Huang
Software Mentions: 5
Published: almost 4 years ago

10.7150/thno.53229

Neoantigen landscape in metastatic nasopharyngeal carcinoma
Cited by: 13
Author(s): Lin Mei, Xiaolong Zhang, Rui You, Qi Yang, Xiong Zou, Kai Yu, You‐Ping Liu, Ruhai Zou, Yi-Jun Hua, Pei‐Yu Huang, Jin Wang, Qi Zhao, Xiaobing Jiang, Jun Tang, Yeunhwa Gu, Tao Yu, Guangcun He, YuLong Xie, Zhi‐Qiang Wang, Ting Liu, Siyuan Chen, Zhixiang Zuo, Ming‐Yuan Chen
Software Mentions: 5
Published: almost 4 years ago

10.18632/aging.102131

Large-scale analysis reveals the specific clinical and immune features of CD155 in glioma
Cited by: 15
Author(s): Fangkun Liu, Jing Huang, Yuanyuan Xiong, Shuwang Li, Zhixiong Liu
Software Mentions: 5
Published: over 5 years ago

10.7150/thno.47137

USP7 targeting modulates anti-tumor immune response by reprogramming Tumor-associated Macrophages in Lung Cancer
Cited by: 87
Author(s): Xiaomeng Dai, Lisen Lu, Suke Deng, Jingshu Meng, Chao Wan, Jing Huang, Yajie Sun, Yan Hu, Bian Wu, Gang Wu, Jonathan F. Lovell, Jin Huang, Kunyu Yang
Software Mentions: 5
Published: almost 5 years ago

10.1186/s12935-021-02046-z

Upregulation of ARNTL2 is associated with poor survival and immune infiltration in clear cell renal cell carcinoma
Cited by: 11
Author(s): Song Wang, Xueyou Ma, Yufan Ying, Jiazhu Sun, Zitong Yang, Jiangfeng Li, Ke Jin, Xiao Wang, Bo Xie, Xiangyi Zheng, Ben Liu, Liping Xie
Software Mentions: 5
Published: over 3 years ago

10.3389/fmolb.2021.624575

Identification of Radiotherapy-Associated Genes in Lung Adenocarcinoma by an Integrated Bioinformatics Analysis Approach
Cited by: 7
Author(s): Junhao Wang, Qizheng Han, Huizi Liu, Haihua Luo, Lei Li, Aihua Liu, Yong Jiang
Software Mentions: 5
Published: over 3 years ago

10.1002/ctm2.246

Circulating tumor cell characterization of lung cancer brain metastases in the cerebrospinal fluid through single‐cell transcriptome analysis
Cited by: 33
Author(s): Haoyu Ruan, Yihang Zhou, Jie Shen, Yue Zhai, Ying Xu, Linyu Pi, Run Huang, Kun Chen, Xiangyu Li, Wendong Ma, Zhiyuan Wu, Xuan Deng, Xiaozhu Wang, Chao Zhang, Ming Guan
Software Mentions: 5
Published: almost 4 years ago

10.3389/fmolb.2021.670666

Identification of a Gene Set Correlated With Immune Status in Ovarian Cancer by Transcriptome-Wide Data Mining
Cited by: 8
Author(s): Lili Fan, Lei Han, Yu Lin, Zhengwei Zhou, Guang Shu, Zhipeng Yan, Haotian Chen, Tianxiang Zhang, Gang Yin
Software Mentions: 5
Published: over 3 years ago

10.1186/s12935-021-01829-8

Identification of key genes involved in tumor immune cell infiltration and cetuximab resistance in colorectal cancer
Cited by: 4
Author(s): Li Liang, Mengling Liu, Xun Sun, Yunfeng Yuan, Ke Peng, Khalid Rashid, Yiyi Yu, Yuehong Cui, Yanjie Chen, Tianshu Liu
Software Mentions: 5
Published: over 3 years ago

10.3389/fmolb.2021.682084

Comprehensive Molecular Analyses of a Novel Mutational Signature Classification System with Regard to Prognosis, Genomic Alterations, and Immune Landscape in Glioma
Cited by: 26
Author(s): Xinwei Han, Taoyuan Lu, Libo Wang, Long Liu, Lifeng Li, Xinwei Han
Software Mentions: 5
Published: over 3 years ago

10.3389/fcell.2021.707677

The Identification of the Metabolism Subtypes of Skin Cutaneous Melanoma Associated With the Tumor Microenvironment and the Immunotherapy
Cited by: 8
Author(s): Ronghua Yang, Zhengguang Wang, Jiehua Li, Xiaobing Pi, Gao Run-xing, Jun Ma, Yi Qu, Sitong Zhou
Software Mentions: 5
Published: over 3 years ago

10.3389/fcell.2021.736540

Characterization of Molecular Heterogeneity Associated With Tumor Microenvironment in Clear Cell Renal Cell Carcinoma to Aid Immunotherapy
Cited by: 9
Author(s): Weimin Zhong, Yinan Li, Yazhou Yuan, Hongbin Zhong, Chaoqun Huang, Jiwei Huang, Yao Lin, Jian Huang
Software Mentions: 5
Published: about 3 years ago

10.18632/aging.104136

Single cell sequencing reveals cell populations that predict primary resistance to imatinib in chronic myeloid leukemia
Cited by: 5
Author(s): Weilong Zhang, Baofeng Yang, Linqian Weng, Jiangtao Li, Jinfeng Bai, Ting Wang, Jingwen Wang, Yue Jin, Hongmei Jing, Yuchen Jiao, Xixi Chen, Hui Liu, Yi‐Xin Zeng
Software Mentions: 5
Published: almost 4 years ago

10.1186/s12967-021-02705-9

Eight-lncRNA signature of cervical cancer were identified by integrating DNA methylation, copy number variation and transcriptome data
Cited by: 23
Author(s): Qihang Zhong, Minzhen Lu, Wei Yuan, Yueyi Cui, Hanqiang Ouyang, Yong Fan, Zhaohui Wang, Congying Wu, Jie Qiao, Jing Hang
Software Mentions: 5
Published: almost 4 years ago

10.1523/ENEURO.0288-18.2019

Brain Region-Specific Gene Signatures Revealed by Distinct Astrocyte Subpopulations Unveil Links to Glioma and Neurodegenerative Diseases
Cited by: 26
Author(s): Raquel Cuevas-Diaz Duran, Chih Yen Wang, Hui Zheng, Benjamin Deneen, Jia Qian Wu
Software Mentions: 5
Published: over 5 years ago

10.3389/fnagi.2021.686066

Significant Difference of Immune Cell Fractions and Their Correlations With Differential Expression Genes in Parkinson’s Disease
Cited by: 13
Author(s): Yilin Huang, Huisheng Liu, Jiaqi Hu, Chongyin Han, Zhenggang Zhong, Wei Luo, Yuhu Zhang, Fei Ling
Software Mentions: 5
Published: over 3 years ago

10.1186/s13058-017-0824-7

Detecting gene signature activation in breast cancer in an absolute, single-patient manner
Cited by: 7
Author(s): Éric R. Paquet, Robert Lesurf, Ali Asghar Tofigh, Vanessa Dumeaux, Michael Hallett
Software Mentions: 5
Published: over 7 years ago

10.3389/fcell.2021.634697

A Combined Two-mRNA Signature Associated With PD-L1 and Tumor Mutational Burden for Prognosis of Lung Adenocarcinoma
Cited by: 12
Author(s): Congkuan Song, Zhi‐Quan Wu, Qingwen Wang, Yujin Wang, Zixin Guo, Sheng Li, Weidong Hu
Software Mentions: 5
Published: almost 4 years ago

10.12688/f1000research.10465.1

Meta-analysis of crowdsourced data compendia suggests pan-disease transcriptional signatures of autoimmunity
Cited by: 5
Author(s): William Lau, Rachel Sparks, John S. Tsang
Software Mentions: 5
Published: almost 8 years ago

10.3389/fonc.2021.670927

Influence of Different Age Cutoff Points on the Prediction of Prognosis of Cancer Patients Receiving ICIs and Potential Mechanistic Exploration
Cited by: 5
Author(s): Rui Guan, Qiong Lyu, Anqi Lin, Junyi Liang, Weimin Ding, Manming Cao, Peng Luo, Jian Zhang
Software Mentions: 5
Published: over 3 years ago

10.3389/fonc.2021.633950

Identification of a Novel Glycolysis-Related Gene Signature Correlates With the Prognosis and Therapeutic Responses in Patients With Clear Cell Renal Cell Carcinoma
Cited by: 13
Author(s): Zhengtong Lv, Qi Lin, Xiheng Hu, Miao Mo, Huichuan Jiang, Yuan Li
Software Mentions: 5
Published: over 3 years ago

10.1002/advs.201902880

ImmuCellAI: A Unique Method for Comprehensive T‐Cell Subsets Abundance Prediction and its Application in Cancer Immunotherapy
Cited by: 479
Author(s): Ya-Ru Miao, Qiong Zhang, Qian Lei, Mei Luo, Gui-Yan Xie, Hongxiang Wang, An‐Yuan Guo
Software Mentions: 5
Published: almost 5 years ago

10.3389/fonc.2021.637193

Oncogenic B-Myb Is Associated With Deregulation of the DREAM-Mediated Cell Cycle Gene Expression Program in High Grade Serous Ovarian Carcinoma Clinical Tumor Samples
Cited by: 5
Author(s): Audra N. Iness, Lisa Rubinsak, Steven J. Meas, Jessica Chaoul, Sadia Sayeed, Raghavendra Pillappa, Sarah M. Temkin, Mikhail G. Dozmorov, Larisa Litovchick
Software Mentions: 5
Published: over 3 years ago

10.3389/fonc.2021.649093

Development and Validation of Epigenetic Modification-Related Signals for the Diagnosis and Prognosis of Hepatocellular Carcinoma
Cited by: 5
Author(s): Maoqing Lu, Qing Sheng, Xupin Jiang, Diguang Wen, Ronggui Zhang, Zuojin Liu
Software Mentions: 5
Published: over 3 years ago

10.1002/ctm2.350

Landscape and dynamics of single tumor and immune cells in early and advanced‐stage lung adenocarcinoma
Cited by: 43
Author(s): Zhencong Chen, Yiwei Huang, Zhengyang Hu, Mengnan Zhao, Ming Li, Guoshu Bi, Yuansheng Zheng, Jiaqi Liang, Tao Lu, Wei Jiang, Songtao Xu, Cheng Zhan, Junjie Xi, Qun Wang, Lijie Tan
Software Mentions: 5
Published: over 3 years ago

10.1016/j.cell.2019.05.047

Neutrophils Driving Unconventional T Cells Mediate Resistance against Murine Sarcomas and Selected Human Tumors
Cited by: 147
Author(s): Andrea Ponzetta, Roberta Carriero, Silvia Carnevale, Marialuisa Barbagallo, Martina Molgora, Chiara Perucchini, Elena Magrini, Francesca Gianni, Paolo Kunderfranco, Nadia Polentarutti, Fabio Pasqualini, Sabrina Di Marco, Domenico Supino, Clelia Peano, Ferdinando Carlo Maria Cananzi, Piergiuseppe Colombo, Silvana Pilotti, Suliman Yousef Alomar, Eduardo Bonavita, Maria Rosaria Galdiero, Cecília Garlanda, Alberto Mantovani, Sébastien Jaillon
Software Mentions: 5
Published: over 5 years ago

10.3389/fgene.2021.649270

Elevated GAS2L3 Expression Correlates With Poor Prognosis in Patients With Glioma: A Study Based on Bioinformatics and Immunohistochemical Analysis
Cited by: 3
Author(s): Yan Zhou, Limin Zhang, Sirong Song, Lixia Xu, Yan Yan, Haiyang Wu, Xiaoguang Tong, Hua Yan
Software Mentions: 5
Published: over 3 years ago

10.3389/fonc.2020.00769

Dysregulated m6A-Related Regulators Are Associated With Tumor Metastasis and Poor Prognosis in Osteosarcoma
Cited by: 54
Author(s): Jianhao Li, Benchen Rao, Jie Yang, Liwen Liu, Mengling Huang, Xin Liu, Guangying Cui, Chao Li, Qicai Han, Hao Yang, Xichun Cui, Ranran Sun
Software Mentions: 5
Published: over 4 years ago

10.3389/fonc.2020.586019

Three Immune-Associated Subtypes of Diffuse Glioma Differ in Immune Infiltration, Immune Checkpoint Molecules, and Prognosis
Cited by: 19
Author(s): Quanwei Zhou, Xuejun Yan, Weidong Liu, Yin Wu, Hongjuan Xu, Damei Cheng, Xingjun Jiang, Chao Ren
Software Mentions: 5
Published: almost 4 years ago

10.3390/biom9100586

Allogenic Faecal Microbiota Transfer Induces Immune-Related Gene Sets in the Colon Mucosa of Patients with Irritable Bowel Syndrome
Cited by: 5
Author(s): Savanne Holster, Guido Hooiveld, Dirk Repsilber, Willem M. de Vos, Robert Jan Brummer, Julia König
Software Mentions: 5
Published: about 5 years ago

10.3389/fcell.2021.696878

Classification of Osteosarcoma Based on Immunogenomic Profiling
Cited by: 14
Author(s): Xinwen Wang, Liangming Wang, Weifeng Xu, Xinwu Wang, Dianshan Ke, Jiumao Lin, Wanzun Lin, Xiaochun Bai
Software Mentions: 5
Published: over 3 years ago

10.1038/s41598-021-86294-z

Development of a novel transcription factors-related prognostic signature for serous ovarian cancer
Cited by: 5
Author(s): Lei He, Nayiyuan Wu, Zhaoyi Liu, Yongchang Chen, Quan Cheng, Jing Wang
Software Mentions: 5
Published: over 3 years ago

10.1038/s41598-021-86002-x

Comprehensive transcriptomic analysis of COVID-19 blood, lung, and airway
Cited by: 102
Author(s): Andrea R. Daamen, Prathyusha Bachali, Katherine A. Owen, Kathryn M. Kingsmore, Erika L. Hubbard, Adam C. Labonte, Robert Robl, Sneha Shrotri, Amrie C. Grammer, Peter E. Lipsky
Software Mentions: 5
Published: over 3 years ago

10.1155/2020/3813546

Identification and Validation of a Potential Prognostic 7-lncRNA Signature for Predicting Survival in Patients with Multiple Myeloma
Cited by: 6
Author(s): Yun Zhong, Zhe Liu, Dangchi Li, Qinyuan Liao, Jingao Li
Software Mentions: 5
Published: about 4 years ago

10.1186/s12935-021-02045-0

Identification and validation of a novel glycolysis-related gene signature for predicting the prognosis in ovarian cancer
Cited by: 17
Author(s): Jing Yu, Tingting Liu, Leilei Liang, Jing Liu, Hong‐Qing Cai, Jia Zeng, Tiantian Wang, Jian Li, Lin Xiu, Ning Li, Lingying Wu
Software Mentions: 4
Published: over 3 years ago

10.3389/fcell.2021.687756

m6A Regulator-Associated Modification Patterns and Immune Infiltration of the Tumor Microenvironment in Hepatocarcinoma
Cited by: 16
Author(s): Jianhao Li, Weiwei Wang, Yubing Zhou, Liwen Liu, Guizhen Zhang, Kelei Guan, Xichun Cui, Xin Liu, Mengling Huang, Guangying Cui, Ranran Sun
Software Mentions: 4
Published: over 3 years ago

10.1186/s13048-021-00881-2

Comprehensive analyses of glycolysis-related lncRNAs for ovarian cancer patients
Cited by: 19
Author(s): Jianfeng Zheng, Jialu Guo, Linling Zhu, Ying Zhou, Jinyi Tong
Software Mentions: 4
Published: about 3 years ago

10.3389/fgene.2021.680369

Identification of MX2 as a Novel Prognostic Biomarker for Sunitinib Resistance in Clear Cell Renal Cell Carcinoma
Cited by: 27
Author(s): Yuang Wei, Xinglin Chen, Xiaohan Ren, Bao Wang, Qian Zhang, Hengtao Bu, Ji Qian, Pengfei Shao
Software Mentions: 4
Published: over 3 years ago

10.3389/pore.2021.601693

Identification of Biomarkers Related to Immune Cell Infiltration in Hepatocellular Carcinoma Using Gene Co-Expression Network
Cited by: 2
Author(s): Wanbang Zhou, Yiyang Chen, Ruixing Luo, Zifan Li, Guanwei Jiang, Xi Ou
Software Mentions: 4
Published: over 3 years ago

10.1038/s41420-021-00473-5

The role of ferroptosis in breast cancer patients: a comprehensive analysis
Cited by: 54
Author(s): Zeng-Hong Wu, Yun Tang, Hong Yu, Huadong Li
Software Mentions: 4
Published: over 3 years ago

10.3389/pore.2021.1609789

Comprehensive Analysis of Metabolic Genes in Breast Cancer Based on Multi-Omics Data
Cited by: 2
Author(s): Yu Hua, Lihong Gao, Xiaobo Li
Software Mentions: 4
Published: over 3 years ago

10.1155/2021/3766659

Multiomics Differences in Lung Squamous Cell Carcinoma Patients with High Radiosensitivity Index Compared with Those with Low Radiosensitivity Index
Cited by: 2
Author(s): You Wei Du, Shengtao Yuan, Xibing Zhuang, Qi Zhang, Tiankui Qiao
Software Mentions: 4
Published: about 3 years ago

10.3389/fmolb.2021.692130

RNA m1A Methyltransferase TRMT6 Predicts Poorer Prognosis and Promotes Malignant Behavior in Glioma
Cited by: 22
Author(s): Beibei Wang, Lihua Niu, Zhengyang Wang, Zhihua Zhao
Software Mentions: 4
Published: about 3 years ago

10.1038/s41598-021-87540-0

Identification of novel autophagy-related lncRNAs associated with a poor prognosis of colon adenocarcinoma through bioinformatics analysis
Cited by: 43
Author(s): Danni Wu, Zhenhua Yin, Yisheng Ji, Lin Li, Yunxin Li, F. Meng, Xiaohan Ren, Ming Xu
Software Mentions: 4
Published: over 3 years ago

10.1038/s41389-021-00311-4

Single-cell RNA sequencing reveals that targeting HSP90 suppresses PDAC progression by restraining mitochondrial bioenergetics
Cited by: 8
Author(s): Li-Peng Hu, Kaixia Zhou, Yan‐Miao Huo, Dejun Liu, Qing Li, Minwei Yang, Peng Huang, Chunjie Xu, Guang-Ang Tian, Lishuang Yao, Xueli Zhang, Yahui Wang, Jun Li, Zhigang Zhang, Shu-Heng Jiang, Xin Xing, Xu Wang, Weiting Qin, Qin Yang
Software Mentions: 4
Published: over 3 years ago

10.18632/oncotarget.9370

Practical aspects of NGS-based pathways analysis for personalized cancer science and medicine
Cited by: 13
Author(s): Ekaterina Kotelnikova, Mikhail A. Pyatnitskiy, A. G. Paleeva, O. S. Kremenetskaya, D. V. Vinogradov
Software Mentions: 4
Published: over 8 years ago

10.1371/journal.pone.0192704

Immune checkpoint inhibitor PD-1 pathway is down-regulated in synovium at various stages of rheumatoid arthritis disease progression
Cited by: 71
Author(s): Yanxia Guo, Alice M. Walsh, Mary Canavan, Mihir D. Wechalekar, Suzanne Cole, Xiaoli Yin, Brian Scott, Matthew J. Loza, Carl Orr, Trudy McGarry, Michèle Bombardieri, Frances Humby, Susanna Proudman, Costantino Pitzalis, Malcolm D. Smith, Joshua R. Friedman, I.E. Anderson, Loui Madakamutil, Douglas J. Veale, Ursula Fearon, Sunil Nagpal
Software Mentions: 4
Published: over 6 years ago

10.1186/s12967-020-02279-y

Comprehensive analysis of differential immunocyte infiltration and the potential ceRNA networks during epicardial adipose tissue development in congenital heart disease
Cited by: 9
Author(s): Li Ma, Wu Shi, Xiaoyan Ma, Ming‐Hui Zou, Weidan Chen, Wenlei Li, Rongjun Zou, Xinxin Chen
Software Mentions: 4
Published: over 4 years ago

10.1038/s41598-020-74391-4

Analysis of gene expression from systemic lupus erythematosus synovium reveals myeloid cell-driven pathogenesis of lupus arthritis
Cited by: 9
Author(s): Erika L. Hubbard, Michelle D. Catalina, Sarah Heuer, Prathyusha Bachali, Robert Robl, Nicholas S. Geraci, Amrie C. Grammer, Peter E. Lipsky
Software Mentions: 4
Published: about 4 years ago

10.3389/fimmu.2021.693608

Single-Cell RNA Sequencing Reveals the Immunological Profiles of Renal Allograft Rejection in Mice
Cited by: 11
Author(s): Qixia Shen, Yucheng Wang, Jiaoyi Chen, Lifeng Ma, Xiao‐Ru Huang, Sydney C. W. Tang, Hui‐Yao Lan, Hong Jiang, Jianghua Chen
Software Mentions: 4
Published: over 3 years ago

10.1038/s41388-018-0273-5

KMT2C mediates the estrogen dependence of breast cancer through regulation of ERα enhancer function
Cited by: 91
Author(s): Kinisha Gala, Qing Li, Amit Sinha, Pedram Razavi, M. Dorso, Francisco Sanchez‐Vega, Young Rock Chung, Ronald C. Hendrickson, James J. Hsieh, Michael F. Berger, Nikolaus Schultz, Alessandro Pastore, Omar Abdel‐Wahab, Sarat Chandarlapaty
Software Mentions: 4
Published: over 6 years ago

10.18632/aging.202901

High expression of COMMD7 is an adverse prognostic factor in acute myeloid leukemia
Cited by: 12
Author(s): Kongfei Li, Lieguang Chen, Hua Zhang, Lu Wang, Keya Sha, Xiaohong Du, Daiyang Li, Zhong-Zheng Zheng, Renzhi Pei, Ying Lu, Hongyan Tong
Software Mentions: 4
Published: over 3 years ago

10.1002/ctm2.434

Integrated transcriptional‐phenotypic analysis captures systemic immunomodulation following antiangiogenic therapy in renal cell carcinoma patients
Cited by: 3
Author(s): Darawan Rinchai, Elena Verzoni, Veronica Huber, Agata Cova, Paola Squarcina, Loris De Cecco, Filippo de Braud, Raffaele Ratta, Matteo Dugo, Luca Lalli, Viviana Vallacchi, Monica Rodolfo, Jessica Roelands, Chiara Castelli, Damien Chaussabel, Giuseppe Procopio, Davide Bedognetti, Licia Rivoltini
Software Mentions: 4
Published: over 3 years ago

10.3389/fonc.2021.603556

Pharmacological Inhibition and Genetic Knockdown of BCL9 Modulate the Cellular Landscape of Cancer-Associated Fibroblasts in the Tumor-Immune Microenvironment of Colorectal Cancer
Cited by: 5
Author(s): Ming Yang, Wei Zhuang, Mei Feng, Yuanyuan Zhu, Yong Chen, Di Zhu
Software Mentions: 4
Published: over 3 years ago

10.7150/ijms.51297

Heat shock factor 5 correlated with immune infiltration serves as a prognostic biomarker in lung adenocarcinoma
Cited by: 5
Author(s): Aizemaiti Rusidanmu, Zhigang Wu, Jie Tang, Haimeng Yan, Xiaoshu Lv
Software Mentions: 4
Published: almost 4 years ago

10.1038/s12276-021-00559-1

Practical prediction model of the clinical response to programmed death-ligand 1 inhibitors in advanced gastric cancer
Cited by: 9
Author(s): Myung‐Giun Noh, Young‐In Yoon, Gihyeon Kim, Hyun Kim, Eulgi Lee, Yeongmin Kim, Chang-Ho Park, Kyung‐Hwa Lee, Hansoo Park
Software Mentions: 4
Published: almost 4 years ago

10.1038/s41598-021-95980-x

Proteomics-based prognostic signature and nomogram construction of hypoxia microenvironment on deteriorating glioblastoma (GBM) pathogenesis
Cited by: 6
Author(s): Yujie Wen, Xiaoyan Zhu, Dongjie Li, Qing Zhao, Quan Cheng, Yun Peng
Software Mentions: 4
Published: about 3 years ago

10.3389/fimmu.2019.00555

Preferential Infiltration of Unique Vγ9Jγ2-Vδ2 T Cells Into Glioblastoma Multiforme
Cited by: 21
Author(s): Mijeong Lee, Chanho Park, Jeongmin Woo, Jin-Ho Kim, Inseong Kho, Do‐Hyun Nam, Woong-Yang Park, Yeonsoo Kim, Doo‐Sik Kong, Hye Won Lee, Tae Jin Kim
Software Mentions: 4
Published: over 5 years ago

10.1038/s41416-020-0796-8

Molecular subtypes of oropharyngeal cancer show distinct immune microenvironment related with immune checkpoint blockade response
Cited by: 16
Author(s): Min Hwan Kim, Jaehwan Kim, Ji Min Lee, Jae Woo Choi, Dongmin Jung, Hojin Cho, Hyundeok Kang, Min Hee Hong, Su Jin Heo, Se Heon Kim, Eun Chang Choi, Da Hee Kim, Young Min Park, Sang Woo Kim, Sun Och Yoon, Yoon Woo Koh, Byoung Chul Cho, Hye Ryun Kim
Software Mentions: 4
Published: over 4 years ago

10.3389/fimmu.2021.649458

Transcriptome and IgH Repertoire Analyses Show That CD11chi B Cells Are a Distinct Population With Similarity to B Cells Arising in Autoimmunity and Infection
Cited by: 16
Author(s): Robert W. Maul, Michelle D. Catalina, Varsha Kumar, Prathyusha Bachali, Amrie C. Grammer, Shu Wang, William W. Yang, Sarfaraz Hasni, Rachel Ettinger, Peter E. Lipsky, Patricia J. Gearhart
Software Mentions: 4
Published: over 3 years ago

10.3389/fimmu.2019.02512

Selective Histone Deacetylase 6 Inhibition Normalizes B Cell Activation and Germinal Center Formation in a Model of Systemic Lupus Erythematosus
Cited by: 26
Author(s): Jingjing Ren, Michelle D. Catalina, Kristin Eden, Xiaofeng Liao, Kaitlin A. Read, Xin Luo, Ryan P. McMillan, Matthew W. Hulver, Matthew Jarpe, Prathyusha Bachali, Amrie C. Grammer, Peter E. Lipsky, Christopher M. Reilly
Software Mentions: 4
Published: about 5 years ago

10.1155/2021/5549298

Bioinformatic Analysis of Prognostic and Immune-Related Genes in Pancreatic Cancer
Cited by: 2
Author(s): Ziang Li, Chang Hu, Zhiqiang Yang, Minlan Yang, Jiayu Fang, Xuhong Zhou
Software Mentions: 4
Published: over 3 years ago

10.3389/fimmu.2021.667177

CXCL8 Associated Dendritic Cell Activation Marker Expression and Recruitment as Indicators of Favorable Outcomes in Colorectal Cancer
Cited by: 20
Author(s): Enhao Li, Xiaobao Yang, Yuzhang Du, Guanzheng Wang, David Chan, Di Wu, Peiqing Xu, Peihong Ni, Dakang Xu, Yiqun Hu
Software Mentions: 4
Published: over 3 years ago

10.7150/ijms.53243

Integrate analysis of the promote function of Cell division cycle-associated protein family to pancreatic adenocarcinoma
Cited by: 15
Author(s): Xing Chen, Zhenglin Wang, Yating Zhu, Chao Zhang, Miao Liu, Xianyu Hu, Wei Chen, Yinan Du
Software Mentions: 4
Published: almost 4 years ago

10.3389/fonc.2020.541479

Identification and Validation of Novel Biomarkers for Diagnosis and Prognosis of Hepatocellular Carcinoma
Cited by: 26
Author(s): Xiaoyi Hu, Mingyang Bao, Jiacheng Huang, Lin Zhou, Shusen Zheng
Software Mentions: 4
Published: about 4 years ago

10.18632/aging.101521

Identification of IDH-mutant gliomas by a prognostic signature according to gene expression profiling
Cited by: 9
Author(s): Qiangwei Wang, Zhiliang Wang, Guanzhang Li, Chuanbao Zhang, Zhaoshi Bao, Zheng Wang, Guoxiang You, Tao Jiang
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pone.0242863

Transcriptional insights into pathogenesis of cutaneous systemic sclerosis using pathway driven meta-analysis assisted by machine learning methods
Cited by: 6
Author(s): Xiao Xu, Meera Ramanujam, Sudha Visvanathan, Shervin Assassi, Zheng Liu, Li Li
Software Mentions: 4
Published: almost 4 years ago

10.1002/advs.202003504

Cytosolic Delivery of Thiolated Neoantigen Nano‐Vaccine Combined with Immune Checkpoint Blockade to Boost Anti‐Cancer T Cell Immunity
Cited by: 28
Author(s): Da Zhang, Zongming Lin, Ming Wu, Zhixiong Cai, Youshi Zheng, Lei He, Zhenli Li, Jie Zhou, Liqin Sun, Geng Chen, Yongyi Zeng, Juan Li, Jingfeng Liu, Huanghao Yang, Xiaolong Liu
Software Mentions: 4
Published: almost 4 years ago

10.1186/s10020-021-00294-3

Identification of prognostic alternative splicing events related to the immune microenvironment of hepatocellular carcinoma
Cited by: 6
Author(s): Shanshan Yu, Luya Cai, Chuan Liu, Ruihong Gu, Lingyi Cai, Leying Zhuo
Software Mentions: 4
Published: over 3 years ago

10.1002/ctm2.364

Clinical and functional significance of a novel ferroptosis‐related prognosis signature in lung adenocarcinoma
Cited by: 9
Author(s): Ziqi Wang, Jie Diao, Xingru Zhao, Zhiwei Xu, Xiaoju Zhang
Software Mentions: 4
Published: over 3 years ago

10.1042/BSR20203051

Uronic acid metabolic process–related gene expression–based signature predicts overall survival of glioma
Cited by: 0
Author(s): Yuemei Feng, Guanzhang Li, Zhongcheng Shi, Xu Yan, Renpeng Li, You Zhai, Yuanhao Chang, Di Wang, Ulf D. Kahlert, Wei Zhang, Fang Yuan
Software Mentions: 4
Published: almost 4 years ago

10.1155/2021/9587084

Development of an Individualized Immune Prognostic Signature for Clear Cell Renal Cell Carcinoma through the Identification of Differential Immune Genes
Cited by: 1
Author(s): Jianfeng Wang, Chaozhi Tang, Xiaowu Liu
Software Mentions: 4
Published: over 3 years ago

10.1038/s42003-019-0382-x

Gene expression analysis delineates the potential roles of multiple interferons in systemic lupus erythematosus
Cited by: 62
Author(s): Michelle D. Catalina, Prathyusha Bachali, Nicholas S. Geraci, Amrie C. Grammer, Peter E. Lipsky
Software Mentions: 4
Published: over 5 years ago

10.18632/oncotarget.13814

The bromodomain inhibitor OTX015 (MK-8628) exerts anti-tumor activity in triple-negative breast cancer models as single agent and in combination with everolimus
Cited by: 74
Author(s): Ramiro Vàzquez, María E. Riveiro, Lucile Astorgues‐Xerri, Elodie Odore, Keyvan Rezai, Eugenio Erba, Nicolò Panini, Andrea Rinaldi, Ivo Kwee, Luca Beltrame, Mohamed Békradda, Esteban Cvitkovic, Francesco Bertoni, Roberta Frapolli, Maurizio D’Incalci
Software Mentions: 4
Published: almost 8 years ago

10.1371/journal.pone.0245602

Cabozantinib can block growth of neuroendocrine prostate cancer patient-derived xenografts by disrupting tumor vasculature
Cited by: 4
Author(s): Mark P. Labrecque, Lisha G. Brown, Ilsa M. Coleman, Holly M. Nguyen, Daniel W. Lin, Eva Corey, Peter S. Nelson, Colm Morrissey
Software Mentions: 4
Published: almost 4 years ago

10.1002/cam4.3977

Identification of prognostic and bone metastasis‐related alternative splicing signatures in mesothelioma
Cited by: 1
Author(s): Runzhi Huang, Zixuan Zheng, Sijia Liu, Penghui Yan, Dianwen Song, Huabin Yin, Peng Hu, Xiaolong Zhu, Zhengyan Chang, Yihan Liu, Juanwei Zhuang, Tong Meng, Zongqiang Huang, Jie Zhang
Software Mentions: 4
Published: over 3 years ago

10.1038/s41598-021-93855-9

Sex and age bias viral burden and interferon responses during SARS-CoV-2 infection in ferrets
Cited by: 10
Author(s): Magen E. Francis, Brian Richardson, Una Goncin, Mara McNeil, Melissa Rioux, Mary K. Foley, Anni Ge, Roger D. Pechous, Jason Kindrachuk, Cheryl M. Cameron, Christopher T. Richardson, J. Lew, Steven Machtaler, Mark J. Cameron, Volker Gerdts, Darryl Falzarano, Alyson A. Kelvin
Software Mentions: 4
Published: over 3 years ago

10.1155/2021/7569168

A Robust Panel Based on Mitochondrial Localized Proteins for Prognostic Prediction of Lung Adenocarcinoma
Cited by: 0
Author(s): Weifeng Chen, Jingyao Wang, Qiumei Zhao, Dandan Liu, Donglin Sun, Ningxia Xie, Haohao Zhang, Deji Ye, Chaoyang Li, Yongzhong Liu, Xiaoren Zhang
Software Mentions: 4
Published: about 3 years ago

10.18632/aging.202558

ENAM gene associated with T classification and inhibits proliferation in renal clear cell carcinoma
Cited by: 8
Author(s): Xiaohan Ren, Shengjie Liang, Yang Li, Yisheng Ji, Lin Li, Chao Qin, Kai Fang
Software Mentions: 4
Published: almost 4 years ago

Projects: bioconductor: GSVA

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