10.1038/s41598-017-01948-1

Formants provide honest acoustic cues to body size in American alligators
Cited by: 24
Author(s): Stephan A. Reber, Judith Janisch, Kevin Torregrosa, Jim Darlington, Kent A. Vliet, W. Tecumseh Fitch
Software Mentions: 5
Published: about 9 years ago

10.3390/ijms22020787

Full-Length Transcriptome Analysis of Four Different Tissues of Cephalotaxus oliveri
Cited by: 13
Author(s): Ziqing He, Yingjuan Su, Ting Wang
Software Mentions: 5
Published: over 5 years ago

10.3389/fonc.2018.00674

Identification of Serum MicroRNAs as Novel Biomarkers in Esophageal Squamous Cell Carcinoma Using Feature Selection Algorithms
Cited by: 28
Author(s): Deqiang Zheng, Yuanjie Ding, Qing Ma, Lei Zhao, Xudong Guo, Yi Shen, Yan He, Wenqiang Wei, Fen Liu
Software Mentions: 5
Published: over 7 years ago

10.7717/peerj.9173

Development and validation of a prognostic nomogram to predict overall survival and cancer-specific survival for patients with anaplastic thyroid carcinoma
Cited by: 9
Author(s): Weiwei Gui, Weifen Zhu, Weina Lu, Chengxin Shang, Fenping Zheng, Xihua Lin, Hong Li
Software Mentions: 5
Published: about 6 years ago

10.1186/s12874-019-0875-9

Cross-cultural validation of the Functional Vision Questionnaire for Children and Young People (FVQ_CYP) with visual impairment in the Dutch population: challenges and opportunities
Cited by: 5
Author(s): Ellen B. M. Elsman, Valerija Tadić, Carel F.W. Peeters, Ger H. M. B. van Rens, Jugnoo S Rahi, Ruth M. A. van Nispen
Software Mentions: 5
Published: over 6 years ago

10.1186/s12977-019-0494-x

Heterogeneity in HIV and cellular transcription profiles in cell line models of latent and productive infection: implications for HIV latency
Cited by: 32
Author(s): Sushama Telwatte, Sara Morón-López, Dvir Aran, Peggy Kim, Christine L. Hsieh, Sunil Kumar Joshi, Mauricio Montaño, Warner C. Greene, Atul J. Butte, Joseph K. Wong, Steven A. Yukl
Software Mentions: 5
Published: over 6 years ago

10.3389/fonc.2021.649093

Development and Validation of Epigenetic Modification-Related Signals for the Diagnosis and Prognosis of Hepatocellular Carcinoma
Cited by: 5
Author(s): Maoqing Lu, Qing Sheng, Xupin Jiang, Diguang Wen, Ronggui Zhang, Zuojin Liu
Software Mentions: 5
Published: about 5 years ago

10.1186/1868-7083-6-4

Differences in smoking associated DNA methylation patterns in South Asians and Europeans
Cited by: 227
Author(s): Hannah R Elliott, Therese Tillin, Wendy L. McArdle, Karen Ho, Aparna Duggirala, Tim Frayling, George Davey Smith, Alun D. Hughes, Nish Chaturvedi, Caroline L Relton
Software Mentions: 5
Published: over 12 years ago

10.3389/fgene.2020.00333

Transcription Factor Profiling to Predict Recurrence-Free Survival in Breast Cancer: Development and Validation of a Nomogram to Optimize Clinical Management
Cited by: 8
Author(s): Hengyu Chen, Xianxiong Ma, Ming Yang, Mengyi Wang, Lei Li, Tao Huang
Software Mentions: 5
Published: about 6 years ago

10.1038/s41598-017-09335-6

Integrative epigenomics, transcriptomics and proteomics of patient chondrocytes reveal genes and pathways involved in osteoarthritis
Cited by: 85
Author(s): Julia Steinberg, Graham R. S. Ritchie, Theodoros I. Roumeliotis, Raveen L Jayasuriya, Matthew Clark, Roger A. Brooks, Abbie L. A. Binch, Karan M. Shah, Rachael Coyle, Mercedes Pardo, Christine Le Maitre, Yolande F M Ramos, Rob G H H Nelissen, Ingrid Meulenbelt, Andrew W. McCaskie, Jyoti S. Choudhary, J. Mark Wilkinson, Eleftheria Zeggini
Software Mentions: 5
Published: almost 9 years ago

10.3389/fmed.2021.690825

Liver Stiffness Is a Predictor of Rebleeding in Patients With Hepatitis B-Related Cirrhosis: A Real-World Cohort Study
Cited by: 6
Author(s): Lingxiang Liu, Yuan Nie, Yue Zhang, Qi Liu, Xuan Zhu
Software Mentions: 5
Published: almost 5 years ago

10.3389/fgene.2021.656114

Identification of the Signature Associated With m6A RNA Methylation Regulators and m6A-Related Genes and Construction of the Risk Score for Prognostication in Early-Stage Lung Adenocarcinoma
Cited by: 8
Author(s): Bingzhou Guo, Hongliang Zhang, Jinliang Wang, Rilige Wu, Junyan Zhang, Qiqin Zhang, Xu Lu, Ming Shen, Zhibo Zhang, Fangyan Gu, Wei Zeng, Xiaodong Jia, Chengliang Yin
Software Mentions: 5
Published: about 5 years ago

10.3389/fnins.2020.00751

A Radiomics Approach to Predicting Parkinson’s Disease by Incorporating Whole-Brain Functional Activity and Gray Matter Structure
Cited by: 32
Author(s): Xuan Cao, Xiao Wang, Chen Xue, Shaojun Zhang, Qingling Huang, Weiguo Liu
Software Mentions: 5
Published: almost 6 years ago

10.3389/fgene.2020.01009

RNA-Seq Analysis Reveals Hub Genes Involved in Chicken Intramuscular Fat and Abdominal Fat Deposition During Development
Cited by: 22
Author(s): Siyuan Xing, Ranran Liu, Guiping Zhao, Lu Liu, M.A.M. Groenen, Ole Madsen, Maiqing Zheng, Xinting Yang, R.P.M.A. Crooijmans, Jie Wen
Software Mentions: 5
Published: almost 6 years ago

10.1186/1471-2164-15-1103

An improved genome of the model marine alga Ostreococcus tauri unfolds by assessing Illumina de novo assemblies
Cited by: 75
Author(s): Romain Blanc-Mathieu, Bram Verhelst, Évelyne Derelle, Stéphane Rombauts, François‐Yves Bouget, Isabelle A. Carré, Annie Château, Adam Eyre‐Walker, Nigel Grimsley, Hervé Moreau, Benoît Piégu, Éric Rivals, Wendy Schackwitz, Yves Van de Peer, Gwenaël Piganeau
Software Mentions: 5
Published: over 11 years ago

10.3390/cancers12061393

Anti-EGFR Therapy Induces EGF Secretion by Cancer-Associated Fibroblasts to Confer Colorectal Cancer Chemoresistance
Cited by: 37
Author(s): Colleen M. Garvey, Roy Lau, Alyssa Sanchez, Ren Sun, Emma Fong, Michael E. Doche, Oscar Chen, Anthony Jusuf, Heinz‐Josef Lenz, Brent K. Larson, Shannon M. Mumenthaler
Software Mentions: 5
Published: about 6 years ago

10.3389/fpsyg.2021.715477

Psychometric Validation of a Questionnaire to Assess Perception and Knowledge About Exposure to Pesticides in Rural Schoolchildren of Maule, Chile
Cited by: 3
Author(s): María Teresa Muñoz-Quezada, Boris Lucero, Benjamín Chacón Castillo, Asa Bradman, Liliana Zúñiga, Brittney Baumert, Verónica Iglesias, Manuel J. Muñoz, Rafael Junqueira Buralli, Carmen Antini
Software Mentions: 5
Published: almost 5 years ago

10.1371/journal.pone.0218677

Patterns of peritoneal dialysis catheter practices and technique failure in peritoneal dialysis: A nationwide cohort study
Cited by: 11
Author(s): Antoine Lanot, Clémence Béchade, Christian Verger, Emmanuel Fabre, I Vernier, Thierry Lobbedez
Software Mentions: 5
Published: about 7 years ago

10.3389/fmed.2017.00153

TruSeq-Based Gene Expression Analysis of Formalin-Fixed Paraffin-Embedded (FFPE) Cutaneous T-Cell Lymphoma Samples: Subgroup Analysis Results and Elucidation of Biases from FFPE Sample Processing on the TruSeq Platform
Cited by: 15
Author(s): Philippe Lefrançois, Michael T. Tetzlaff, Linda Moreau, Andrew Watters, Elena Netchiporouk, Nathalie Provost, Martin Gilbert, Xiao Ni, Denis Sasseville, Madeleine Duvic, Ivan V. Litvinov
Software Mentions: 5
Published: almost 9 years ago

10.3389/fgene.2021.672674

Four Prognosis-Associated lncRNAs Serve as Biomarkers in Ovarian Cancer
Cited by: 10
Author(s): Jianfeng Zheng, Jialu Guo, Huizhi Zhang, Benben Cao, XU Guomin, Zhifen Zhang, Jinyi Tong
Software Mentions: 5
Published: about 5 years ago

10.3390/cancers13133355

Vascular Involvement in Thymic Epithelial Tumors: Surgical and Oncological Outcomes
Cited by: 7
Author(s): Giovanni Maria Comacchio, Andrea Dell’Amore, Maria Carlotta Marino, Michele Dario Russo, Marco Schiavon, Marco Mammana, Eleonora Faccioli, Giulia Lorenzoni, Darío Gregori, Giulia Pasello, Giuseppe Marulli, Federico Rea
Software Mentions: 5
Published: about 5 years ago

10.3390/cancers13030380

Circulating Exosomal Integrin β3 Is Associated with Intracranial Failure and Survival in Lung Cancer Patients Receiving Cranial Irradiation for Brain Metastases: A Prospective Observational Study
Cited by: 9
Author(s): Guann-Yiing Chen, Jason Chia‐Hsien Cheng, Yafang Chen, James Chih‐Hsin Yang, Feng-Ming Hsu
Software Mentions: 5
Published: over 5 years ago

10.1186/s12859-018-2115-4

Notos - a galaxy tool to analyze CpN observed expected ratios for inferring DNA methylation types
Cited by: 6
Author(s): Ingo Bulla, Benoît Aliaga, Virginia Lacal, Jan Bulla, Christoph Grunau, Cristian Chaparro
Software Mentions: 5
Published: over 8 years ago

10.1186/s13059-019-1831-z

Gut microbiome composition in the Hispanic Community Health Study/Study of Latinos is shaped by geographic relocation, environmental factors, and obesity
Cited by: 83
Author(s): Robert C. Kaplan, Zheng Wang, Mykhaylo Usyk, Daniela Sotres-Álvarez, Martha L. Daviglus, Neil Schneiderman, Gregory A. Talavera, Marc D. Gellman, Bharat Thyagarajan, Jee Young Moon, Yoshiki Vázquez-Baeza, Daniel McDonald, Jessica Williams-Nguyen, Michael C. Wu, Kari E. North, Justin P. Shaffer, Christopher C. Sollecito, Qibin Qi, Carmen R. Isasi, Tao Wang, Rob Knight, Robert D. Burk
Software Mentions: 5
Published: over 6 years ago

10.1002/ejhf.1996

National trends in heart failure mortality in men and women,<scp>United Kingdom</scp>, 2000–2017
Cited by: 22
Author(s): Clare Taylor, José M. Ordóñez‐Mena, Nicholas Jones, Andrea Roalfe, Sarah Lay-Flurrie, Tom Marshall, F D Richard Hobbs
Software Mentions: 5
Published: almost 6 years ago

10.1186/s12864-018-5396-0

s·nr: a visual analytics framework for contextual analyses of private and public RNA-seq data
Cited by: 0
Author(s): Paul Klemm, Peter Frommolt, Jan-Wilhelm Kornfeld
Software Mentions: 5
Published: over 7 years ago

10.3389/fcell.2021.711348

Characterization of Molecular Subtypes in Head and Neck Squamous Cell Carcinoma With Distinct Prognosis and Treatment Responsiveness
Cited by: 10
Author(s): Pei Zhang, Shue Li, Tingting Zhang, Fengzhen Cui, Jihua Shi, Fengbo Zhao, Xia Sheng
Software Mentions: 5
Published: almost 5 years ago

10.1186/s12913-017-2816-9

Impact of a New York City supportive housing program on Medicaid expenditure patterns among people with serious mental illness and chronic homelessness
Cited by: 18
Author(s): Sungwoo Lim, Qi Gao, Elsa Stazesky, Tejinder Singh, Tiffany G. Harris, Amber Levanon Seligson
Software Mentions: 5
Published: over 8 years ago

10.3389/fcell.2021.633607

Development and Validation of a Hypoxia-Associated Prognostic Signature Related to Osteosarcoma Metastasis and Immune Infiltration
Cited by: 35
Author(s): Yucheng Fu, Qiyuan Bao, Zhuochao Liu, Guoyu He, Junxiang Wen, Qi Liu, Yanguang Xu, Zhijian Jin, Weibin Zhang
Software Mentions: 5
Published: over 5 years ago

10.3389/fcell.2021.723721

Identification of the Immune-Related Genes in Tumor Microenvironment That Associated With the Recurrence of Head and Neck Squamous Cell Carcinoma
Cited by: 6
Author(s): Chengcheng Liu, Wenwen Qi, Nianqiao Gong, Fenlu Zhu, Ran Xu, Zhaogang Teng, Fanxing Xu, Ya‐Zhen Qin, Mingqiu Zhao, Xiaoming Li, Ming Xia
Software Mentions: 5
Published: almost 5 years ago

10.3389/fpsyg.2018.01343

On the Dependability and Feasibility of Layperson Ratings of Divergent Thinking
Cited by: 26
Author(s): Richard W. Hass, Marisa Rivera, Paul J. Silvia
Software Mentions: 5
Published: almost 8 years ago

10.1186/gb-2007-8-9-r190

DetectiV: visualization, normalization and significance testing for pathogen-detection microarray data
Cited by: 29
Author(s): Michael Watson, Juliet Dukes, Abu-Bakr Abu-Median, Donald P. King, Paul Britton
Software Mentions: 5
Published: over 19 years ago

10.3389/fcell.2021.684643

Development of an Individualized Ubiquitin Prognostic Signature for Clear Cell Renal Cell Carcinoma
Cited by: 5
Author(s): Yue Wu, Xi Zhang, Wa Xian, Huan Feng, Bintao Hu, Zhiyao Deng, Bo Liu, Yang Luan, Yajun Ruan, Xiaohui Liu, Zhuo Liu, Jihong Liu, Tao Wang
Software Mentions: 5
Published: about 5 years ago

10.3389/fgene.2021.728913

A Unified Framework for Inattention Estimation From Resting State Phase Synchrony Using Machine Learning
Cited by: 1
Author(s): Xun‐Heng Wang, Lihua Li
Software Mentions: 5
Published: almost 5 years ago

10.3389/fvets.2018.00122

Periparturient Behavior and Physiology: Further Insight Into the Farrowing Process for Primiparous and Multiparous Sows
Cited by: 20
Author(s): Sarah H. Ison, Suzanne Jarvis, Hall Sa, Cheryl Ashworth, Kenny Rutherford
Software Mentions: 5
Published: about 8 years ago

10.3390/ijms20143543

Sex-Dimorphic Behavioral Alterations and Altered Neurogenesis in U12 Intron Splicing-Defective Zrsr1 Mutant Mice
Cited by: 9
Author(s): Francisco Alén, Isabel Gómez-Redondo, Patricia Rivera, Juan Suárez, Priscila Ramos‐Ibeas, Eva Pericuesta, Raúl Fernández‐González, Serafín Pérez‐Cerezales, Keiko Horiuchi, Laura Orío, Fernando Rodríguez de Fonseca, Alfonso Gutiérrez‐Adán
Software Mentions: 5
Published: almost 7 years ago

10.3389/fgene.2020.00663

Gastric Cancer Tumor Microenvironment Characterization Reveals Stromal-Related Gene Signatures Associated With Macrophage Infiltration
Cited by: 29
Author(s): Shenyu Wei, Jiahua Lu, Jianying Lou, Connie R. Shi, Shaowei Mo, Yaojian Shao, Junjie Ni, Wu Zhang, Xiangdong Cheng
Software Mentions: 5
Published: about 6 years ago

10.3389/fmicb.2016.00774

Stable Isotope Phenotyping via Cluster Analysis of NanoSIMS Data As a Method for Characterizing Distinct Microbial Ecophysiologies and Sulfur-Cycling in the Environment
Cited by: 19
Author(s): Katherine S. Dawson, Silvan Scheller, Jesse G. Dillon, Victoria J. Orphan
Software Mentions: 5
Published: about 10 years ago

10.1038/s41396-020-00773-1

Benchmarking microbial growth rate predictions from metagenomes
Cited by: 45
Author(s): Andrew M. Long, Songjun Hou, J. Cesar Ignacio‐Espinoza, Jed A. Fuhrman
Software Mentions: 5
Published: almost 6 years ago

10.3390/cells9122599

LKB1 Differently Regulates Adipogenesis in Intramuscular and Subcutaneous Adipocytes through Metabolic and Cytokine-Related Signaling Pathways
Cited by: 5
Author(s): Zhonglin Xu, Yanbing Zhou, Qiuyun Nong, Wenjing You, Liyi Wang, Yizhen Wang, Tizhong Shan
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pone.0244829

Whole-genome sequence analysis and comparisons between drug-resistance mutations and minimum inhibitory concentrations of Mycobacterium tuberculosis isolates causing M/XDR-TB
Cited by: 16
Author(s): Ditthawat Nonghanphithak, Orawee Kaewprasert, Pratchakan Chaiyachat, Wipa Reechaipichitkul, Angkana Chaiprasert, Kiatichai Faksri
Software Mentions: 5
Published: over 5 years ago

10.1186/s13059-017-1318-8

Crossing enhanced and high fidelity SpCas9 nucleases to optimize specificity and cleavage
Cited by: 94
Author(s): Péter István Kulcsár, András Tálas, Krisztina Huszár, Zoltán Ligeti, Eszter Tóth, Nóra Weinhardt, Elfrieda Fodor, Ervin Welker
Software Mentions: 5
Published: almost 9 years ago

10.1371/journal.pone.0220881

Comparison of catchment scale 3D and 2.5D modelling of soil organic carbon stocks in Jiangxi Province, PR China
Cited by: 17
Author(s): Tobias Rentschler, Philipp Gries, Thorsten Behrens, Helge Bruelheide, Peter Kühn, Steffen Seitz, Xuezheng Shi, Stefan Trogisch, Thomas Scholten, Karsten Schmidt
Software Mentions: 5
Published: almost 7 years ago

10.1002/ece3.6422

Evidence of capacitation in the parasitoid wasp, Nasonia vitripennis, and its potential role in sex allocation
Cited by: 0
Author(s): Alun R. C. Jones, Eamonn B. Mallon
Software Mentions: 5
Published: about 6 years ago

10.1002/2211-5463.12572

Identification of nine micro <scp>RNA</scp> s as potential biomarkers for lung adenocarcinoma
Cited by: 15
Author(s): Zhigang Ren, Xiaobin Hou, Xiaodong Tian, Jialong Guo, Zhang Lian-bin, Zhiqiang Xue, Jiao Deng, Shaowei Zhang, Junyi Pan, Xiangyang Chu
Software Mentions: 5
Published: over 7 years ago

10.7554/eLife.03346

Identification of the transcription factor ZEB1 as a central component of the adipogenic gene regulatory network
Cited by: 82
Author(s): Carine Gubelmann, Petra Schwalie, Sunil K. Raghav, Eva Röder, Tenagne Delessa, Elke Kiehlmann, Sebastian M. Waszak, Andrea Corsinotti, Gilles Udin, Wiebke Holcombe, Gottfried Rudofsky, Didier Trono, Christian Wolfrum, Bart Deplancke
Software Mentions: 5
Published: almost 12 years ago

10.1016/j.celrep.2019.11.066

Molecular Basis for Autosomal-Dominant Renal Fanconi Syndrome Caused by HNF4A
Cited by: 28
Author(s): Valentina Marchesin, Albert Pérez-Martí, G. Le Meur, Roman Pichler, Kelli Grand, Enriko Klootwijk, Anne Kesselheim, Robert Kleta, Soeren S. Lienkamp, Matias Simons
Software Mentions: 5
Published: over 6 years ago

10.1371/journal.pgen.1009726

The genetic consequences of dog breed formation—Accumulation of deleterious genetic variation and fixation of mutations associated with myxomatous mitral valve disease in cavalier King Charles spaniels
Cited by: 8
Author(s): Erik Axelsson, Ingrid Ljungvall, Priyasma Bhoumik, Laura Bas Conn, Eva Murén, Åsa Ohlsson, Lisbeth H. Olsen, Karolina Engdahl, Ragnvi Hagman, Jeanette Hanson, Dmytro Kryvokhyzha, Mats E. Pettersson, Olivier Grenet, Jonathan G. Moggs, Alberto Del Río-Espínola, Christian Epe, Bruce E. Taillon, Nilesh R. Tawari, Shrinivas Mane, Troy Hawkins, Åke Hedhammar, Philippe Gruet, Jens Häggström, Kerstin Lindblad‐Toh
Software Mentions: 5
Published: almost 5 years ago

10.1093/gigascience/gix101

LAGOS-NE: a multi-scaled geospatial and temporal database of lake ecological context and water quality for thousands of US lakes
Cited by: 97
Author(s): Patricia A. Soranno, Linda C. Bacon, Michael Beauchene, Karen E. Bednar, Edward G. Bissell, Claire Boudreau, Marvin G. Boyer, Mary T. Bremigan, Stephen R. Carpenter, J. Carr, Kendra Spence Cheruvelil, Samuel T. Christel, Matt Claucherty, Sarah M. Collins, Joseph D. Conroy, John A. Downing, Jed Dukett, C. Emi Fergus, Christopher T. Filstrup, Clara Funk, María J. González, Linda T. Green, Corinna Gries, John D. Halfman, Stephen K. Hamilton, Paul C. Hanson, Emily Norton Henry, Elizabeth Herron, Celeste Hockings, James R. Jackson, Kari Jacobson-Hedin, Lorraine L. Janus, William A. Jones, John R. Jones, Caroline M. Keson, Katelyn B. S. King, Scott A. Kishbaugh, Jean‐François Lapierre, Barbara Lathrop, Jo A. Latimore, Yuehlin Lee, Noah R. Lottig, Jason Lynch, Leslie J. Matthews, William H. McDowell, Karen Moore, Brian P. Neff, Sarah J. Nelson, Samantha Oliver, Michael L. Pace, Donald C. Pierson, Autumn Poisson, Amina I. Pollard, David M. Post, Paul O. Reyes, Donald O. Rosenberry, Karen M. Roy, Lars G. Rudstam, Orlando Sarnelle, Nancy J. Schuldt, Catherine Scott, Nicholas K. Skaff, Nicole J. Smith, Nick R. Spinelli, Joseph Stachelek, Emily H. Stanley, John L. Stoddard, Scott B. Stopyak, Craig A. Stow, Jason Tallant, Pang‐Ning Tan, Anthony P. Thorpe, Michael J. Vanni, Tyler Wagner, Gretchen Watkins, Kathleen C. Weathers, Katherine E. Webster, Jeffrey D. White, Marcy K. Wilmes, Shuai Yuan
Software Mentions: 5
Published: over 8 years ago

10.1016/j.celrep.2019.09.082

DoubletDecon: Deconvoluting Doublets from Single-Cell RNA-Sequencing Data
Cited by: 120
Author(s): Erica A. K. DePasquale, Daniel Schnell, Pieter-Jan Van Camp, Íñigo Valiente-Alandí, Burns C. Blaxall, H. Leighton Grimes, Harinder Singh, Nathan Salomonis
Software Mentions: 5
Published: over 6 years ago

10.1186/1471-2105-12-S15-S5

Data hosting infrastructure for primary biodiversity data
Cited by: 13
Author(s): Anthony Goddard, Nevin Wilson, Phil Cryer, Grant Yamashita
Software Mentions: 5
Published: over 14 years ago

10.3389/fonc.2019.01200

C-Reactive Protein-to-Albumin Ratio as Prognostic Marker for Anal Squamous Cell Carcinoma Treated With Chemoradiotherapy
Cited by: 18
Author(s): Daniel Martin, Franz Rödel, Panagiotis Balermpas, Ria Winkelmann, Emmanouil Fokas, Claus Rödel
Software Mentions: 5
Published: over 6 years ago

10.7554/eLife.53948

Stimulation strength controls the rate of initiation but not the molecular organisation of TCR-induced signalling
Cited by: 14
Author(s): Y. Claire, John C. Marioni, Gillian M. Griffiths, Alison F. Richard
Software Mentions: 5
Published: about 6 years ago

10.1371/journal.pone.0163711

hemaClass.org: Online One-By-One Microarray Normalization and Classification of Hematological Cancers for Precision Medicine
Cited by: 7
Author(s): Steffen Falgreen, Anders Ellern Bilgrau, Rasmus Froberg Brøndum, Lasse Hjort Jakobsen, Jonas Have, Kasper Lindblad Nielsen, Tarec Christoffer El‐Galaly, Julie Støve Bødker, Alexander Schmitz, Ken H. Young, Hans Erik Johnsen, Karen Dybkær, Martin Bøgsted
Software Mentions: 5
Published: almost 10 years ago

10.1038/s41598-021-91425-7

Establishment and assessment of an amplicon sequencing method targeting the 16S-ITS-23S rRNA operon for analysis of the equine gut microbiome
Cited by: 17
Author(s): Yuta Kinoshita, Hidekazu Niwa, Eri Uchida‐Fujii, Toshio Nukada
Software Mentions: 5
Published: about 5 years ago

10.1038/s41419-020-02948-2

Acyl-CoA thioesterase 1 prevents cardiomyocytes from Doxorubicin-induced ferroptosis via shaping the lipid composition
Cited by: 55
Author(s): Yunchang Liu, Liping Zeng, Yong Yang, Chen Chen, Daowen Wang, Hong Wang
Software Mentions: 5
Published: almost 6 years ago

10.1038/s41598-019-56472-1

Sensitive detection of EBV microRNAs across cancer spectrum reveals association with decreased survival in adult acute myelocytic leukemia
Cited by: 8
Author(s): Mercedeh Movassagh, Cliff I. Oduor, Catherine S. Forconi, Ann M. Moormann, Jeffrey A. Bailey
Software Mentions: 5
Published: over 6 years ago

10.1038/s41419-020-2520-2

NF-kappa B interacting long noncoding RNA enhances the Warburg effect and angiogenesis and is associated with decreased survival of patients with gliomas
Cited by: 16
Author(s): Chen Zheng, Shiting Li, Lin Shen, Xiangyu Wei, Hanshuo Zhu, Xueyi Wang, Min Yang, Xiaohang Zheng
Software Mentions: 5
Published: about 6 years ago

10.1007/s10120-021-01190-9

Nationwide evaluation of mutation-tailored treatment of gastrointestinal stromal tumors in daily clinical practice
Cited by: 5
Author(s): Elisabeth M. P. Steeghs, Hans Gelderblom, Vincent K.Y. Ho, Quirinus J.M. Voorham, Stefan M. Willems, Katrien Grünberg, Marjolijn J. L. Ligtenberg
Software Mentions: 5
Published: about 5 years ago

10.1038/s41598-019-41103-6

Reconstructing foot-and-mouth disease outbreaks: a methods comparison of transmission network models
Cited by: 30
Author(s): Simon M. Firestone, Yoko Hayama, Richard Bradhurst, Takehisa Yamamoto, Toshiyuki Tsutsui, Mark Stevenson
Software Mentions: 5
Published: over 7 years ago

10.7717/peerj.7171

Identification of diagnostic markers for major depressive disorder by cross-validation of data from whole blood samples
Cited by: 10
Author(s): Huimei Wang, Mingwei Zhang, Qiqi Xie, Yu Jin, Qi Yan, Qiuyuan Yue
Software Mentions: 5
Published: about 7 years ago

10.7554/eLife.35788

A promoter interaction map for cardiovascular disease genetics
Cited by: 111
Author(s): Lindsey Montefiori, Débora R. Sobreira, Noboru Jo Sakabe, Ivy Aneas, Amelia C Joslin, Grace Hansen, Grazyna Bozek, Ivan P. Moskowitz, Elizabeth M. McNally, Marcelo A. Nóbrega
Software Mentions: 5
Published: about 8 years ago

10.1136/heartjnl-2020-318823

Survival of people with valvular heart disease in a large, English community-based cohort study
Cited by: 11
Author(s): Clare J Taylor, José M. Ordóñez‐Mena, Nicholas Jones, Andrea Roalfe, Saul G. Myerson, Bernard Prendergast, FD Richard Hobbs
Software Mentions: 5
Published: about 5 years ago

10.7717/peerj.12125

Identification of immune related cells and crucial genes in the peripheral blood of ankylosing spondylitis by integrated bioinformatics analysis
Cited by: 12
Author(s): Yang Zheng, Bingbing Cai, Conglin Ren, Haipeng Xu, Weibin Du, Yinglong Wu, Fei-Jan Lin, Helou Zhang, Renfu Quan
Software Mentions: 5
Published: almost 5 years ago

10.7717/peerj.8390

Identification of key biomarkers and immune infiltration in the synovial tissue of osteoarthritis by bioinformatics analysis
Cited by: 46
Author(s): Weisong Cai, Haohuan Li, Yubiao Zhang, Guoge Han
Software Mentions: 5
Published: over 6 years ago

10.7717/peerj.11321

Identification of key genes and biological processes contributing to colitis associated dysplasia in ulcerative colitis
Cited by: 5
Author(s): Di Zhang, Pengguang Yan, Tian Han, Xiaoyun Cheng, Jingnan Li
Software Mentions: 5
Published: about 5 years ago

10.7717/peerj.6548

Identification of an eight-gene signature for survival prediction for patients with hepatocellular carcinoma based on integrated bioinformatics analysis
Cited by: 41
Author(s): Guo-jie Qiao, Liang Chen, Junzhen Wu, Li Zhouri
Software Mentions: 5
Published: over 7 years ago

10.7717/peerj.8312

Identification and validation of a three-gene signature as a candidate prognostic biomarker for lower grade glioma
Cited by: 26
Author(s): Kai Xiao, Qing Liu, Gang Peng, Jun Su, Chaoying Qin, Xiangyu Wang
Software Mentions: 5
Published: over 6 years ago

10.7717/peerj.11342

Centromere protein N may be a novel malignant prognostic biomarker for hepatocellular carcinoma
Cited by: 6
Author(s): Qingqing Wang, Xiaoyan Yu, Zhewen Zheng, Fengxia Chen, Ningning Yang, Youwen Zhou
Software Mentions: 5
Published: about 5 years ago

10.1155/2020/2450569

Infiltration of Immunoinflammatory Cells and Related Chemokine/Interleukin Expression in Different Gastric Immune Microenvironments
Cited by: 13
Author(s): Ang Wang, Siru Nie, Zhi Lv, Jing Wen, Yuan Yuan
Software Mentions: 5
Published: over 5 years ago

10.3390/v13061129

Evidence of Transcriptional Shutoff by Pathogenic Viral Haemorrhagic Septicaemia Virus in Rainbow Trout
Cited by: 4
Author(s): Irene Cano, Eduarda M. Santos, Karen Moore, Audrey Farbos, Ronny van Aerle
Software Mentions: 5
Published: about 5 years ago

10.3389/frai.2021.668035

Linking Linguistic and Geographic Distance in Four Semantic Domains: Computational Geo-Analyses of Internal and External Factors in a Dialect Continuum
Cited by: 1
Author(s): John L. A. Huisman, Karlien Franco, R.W.N.M. van Hout
Software Mentions: 5
Published: about 5 years ago

10.1038/s41385-019-0228-3

Commensal microbiota drive the functional diversification of colon macrophages
Cited by: 62
Author(s): Byunghyun Kang, Luigi J. Alvarado, Teayong Kim, Michael L. Lehmann, Hyeseon Cho, Jianping He, Peng Li, Bong-Hyun Kim, André Larochelle, Brian L. Kelsall
Software Mentions: 5
Published: over 6 years ago

10.1186/s13058-016-0714-4

Intermittent energy restriction induces changes in breast gene expression and systemic metabolism
Cited by: 33
Author(s): Michelle Harvie, Andrew H. Sims, Mary Pegington, Katherine Spence, Adam Mitchell, Andrew A. Vaughan, J. William Allwood, Yun Xu, Nicholas J. W. Rattray, Royston Goodacre, D. Gareth Evans, Ellen Sullivan Mitchell, Debbie McMullen, Robert B. Clarke, Anthony Howell
Software Mentions: 5
Published: about 10 years ago

10.1186/s13024-020-00412-5

A novel systems biology approach to evaluate mouse models of late-onset Alzheimer’s disease
Cited by: 36
Author(s): Christoph Preuß, Ravi S. Pandey, Erin Piazza, Alexander D. Fine, Asli Uyar, Thanneer M. Perumal, Dylan Garceau, Kevin P. Kotredes, Huw Williams, Lara M. Mangravite, Bruce T. Lamb, Adrian L. Oblak, Gareth R. Howell, Michael Sasner, Benjamin A. Logsdon, Gregory W. Carter
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pone.0242879

Validation of models using basic parameters to differentiate intestinal tuberculosis from Crohn’s disease: A multicenter study from Asia
Cited by: 9
Author(s): Julajak Limsrivilai, Choon Kin Lee, Piyapan Prueksapanich, Kamin Harinwan, Asawin Sudcharoen, Natcha Cheewasereechon, Satimai Aniwan, Pimsiri Sripongpan, Panu Wetwittayakhlang, Ananya Pongpaibul, Anapat Sanpavat, Nonthalee Pausawasdi, Phunchai Charatcharoenwitthaya, Peter Higgins, Siew C. Ng
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pntd.0005223

MLST-Based Population Genetic Analysis in a Global Context Reveals Clonality amongst Cryptococcus neoformans var. grubii VNI Isolates from HIV Patients in Southeastern Brazil
Cited by: 55
Author(s): Kennio Ferreira‐Paim, Leonardo Andrade-Silva, Fernanda Machado Fonseca, Thatiana Bragine Ferreira, Delio José Mora, Juliana Andrade-Silva, Aziza Khan, Aiken Dao, Eduardo C. Reis, Margarete Teresa Gottardo de Almeida, André Luiz Maltos, R. Virmondes, Luciana Trilles, Volker Rickerts, Ariya Chindamporn, Jane E. Sykes, Massimo Cogliati, Kirsten Nielsen, Teun Boekhout, Matthew C. Fisher, June Kwon‐Chung, David M. Engelthaler, Márcia dos Santos Lazéra, Wieland Meyer, Mário León Silva-Vergara
Software Mentions: 5
Published: over 9 years ago

10.1093/gigascience/giz057

Map and model—moving from observation to prediction in toxicogenomics
Cited by: 15
Author(s): Andreas Schüttler, Rolf Altenburger, Madeleine Ammar, Marcella Bader-Blukott, Gianina Jakobs, Johanna Knapp, Janet Krüger, Kristin Reiche, Gi‐Mick Wu, Wibke Busch
Software Mentions: 5
Published: about 7 years ago

10.3390/biology10030223

Asparagopsis armata Exudate Cocktail: The Quest for the Mechanisms of Toxic Action of an Invasive Seaweed on Marine Invertebrates
Cited by: 7
Author(s): Carla O. Silva, Tiago Simões, Rafael Félix, Amadeu M.V.M. Soares, Carlos Barata, Sara C. Novais, Marco F.L. Lemos
Software Mentions: 5
Published: over 5 years ago

10.3390/metabo9060113

Cerebral Vitamin B5 (D-Pantothenic Acid) Deficiency as a Potential Cause of Metabolic Perturbation and Neurodegeneration in Huntington’s Disease
Cited by: 46
Author(s): Stefano Patassini, Paul Begley, Jiaolong Xu, Stephanie J. Church, Nina Kureishy, Suzanne J. Reid, Henry J. Waldvogel, Richard L.M. Faull, Russell G. Snell, Richard D. Unwin, Garth J. S. Cooper
Software Mentions: 5
Published: about 7 years ago

10.17305/bjbms.2020.5096

Bionformatics analysis reveals TSPAN1 as a candidate biomarker of progression and prognosis in pancreatic cancer
Cited by: 5
Author(s): Chenhui Ma, Zelong Cui, YiChao Wang, Lei Zhang, Jiaxin Wen, Huaibin Guo, Na Li, Wanxing Zhang
Software Mentions: 5
Published: over 5 years ago

10.1186/s13068-018-1215-8

The primary transcriptome of the fast-growing cyanobacterium Synechococcus elongatus UTEX 2973
Cited by: 42
Author(s): Xiaoming Tan, Songjun Hou, Kuo Song, Jens Georg, Stephan Klähn, Xuefeng Lü, Wolfgang R. Hess
Software Mentions: 5
Published: almost 8 years ago

10.1002/jcsm.12741

Meta‐analysis of genome‐wide DNA methylation and integrative omics of age in human skeletal muscle
Cited by: 29
Author(s): Sarah Voisin, Jacques Michaux, Shanie Landen, Nicholas R. Harvey, Larisa M. Haupt, Lyn R. Griffiths, Sofiya Gancheva, Meriem Ouni, Markus Jähnert, Kevin J. Ashton, Vernon G. Coffey, Jamie-Lee M Thompson, Thomas Doering, Anne Gabory, Claudine Junien, Robert Caïazzo, Hélène Verkindt, Violetta Raverdy, François Pattou, Philippe Froguel, Jeffrey M. Craig, Sara Blocquiaux, Martine Thomis, Adam P. Sharples, Annette Schürmann, Michael Roden, Steve Horvath, Nir Eynon
Software Mentions: 5
Published: about 5 years ago

10.3390/s20164575

Comparative Analysis on Machine Learning and Deep Learning to Predict Post-Induction Hypotension
Cited by: 17
Author(s): Ji‐Hyun Lee, Jiyoung Woo, Ah Reum Kang, Young-Seob Jeong, Woohyun Jung, Misoon Lee, Sang Hyun Kim
Software Mentions: 5
Published: almost 6 years ago

10.3390/biom9100586

Allogenic Faecal Microbiota Transfer Induces Immune-Related Gene Sets in the Colon Mucosa of Patients with Irritable Bowel Syndrome
Cited by: 5
Author(s): Savanne Holster, Guido Hooiveld, Dirk Repsilber, Willem M. de Vos, Robert Jan Brummer, Julia König
Software Mentions: 5
Published: almost 7 years ago

10.3389/fvets.2020.580400

Spatial and Simultaneous Seroprevalence of Anti-Leptospira Antibodies in Owners and Their Domiciled Dogs in a Major City of Southern Brazil
Cited by: 9
Author(s): Aline do Nascimento Benitez, Thaís Cabral Monica, Ana Carolina Miura, Micheline Sahyun Romanelli, Lucienne Garcia Pretto‐Giordano, Roberta Lemos Freire, Regina Mitsuka‐Breganó, Camila Marinelli Martins, Alexander Welker Biondo, Isabela Machado Serrano, Thiago Henrique Carneiro Rios Lopes, Renato Barbosa Reis, Jancarlo Ferreira Gomes, Federico Costa, Elsio A. Wunder, Albert I. Ko, Italmar Teodorico Navarro
Software Mentions: 5
Published: over 5 years ago

10.1155/2020/3909416

Recognition of Immune Microenvironment Landscape and Immune-Related Prognostic Genes in Breast Cancer
Cited by: 7
Author(s): Huiling Wang, Sylvaine You, Meng Fang, Qian Fang
Software Mentions: 5
Published: over 5 years ago

10.1186/gm377

Digital transcriptome profiling of normal and glioblastoma-derived neural stem cells identifies genes associated with patient survival
Cited by: 47
Author(s): Pär G. Engström, Diva Tommei, Stefan H. Stricker, Christine Ender, Steven M. Pollard, Paul Bertone
Software Mentions: 5
Published: over 14 years ago

10.1038/srep37393

Changes of bivalent chromatin coincide with increased expression of developmental genes in cancer
Cited by: 84
Author(s): Stephan H. Bernhart, Helene Kretzmer, Lesca M. Holdt, Frank Jühling, Ole Ammerpohl, Anke Bergmann, Bernd H. Northoff, Gero Doose, Reiner Siebert, Peter F. Stadler, Steve Hoffmann
Software Mentions: 5
Published: over 9 years ago

10.1186/s13059-021-02294-2

seqQscorer: automated quality control of next-generation sequencing data using machine learning
Cited by: 9
Author(s): Steffen Albrecht, Maximilian Sprang, Miguel A. Andrade‐Navarro, Jean-Fred Fontaine
Software Mentions: 5
Published: over 5 years ago

10.1016/j.csbj.2021.05.028

Distinguishing between PTEN clinical phenotypes through mutation analysis
Cited by: 14
Author(s): Stephanie Portelli, Lucy Barr, Alex Guimarães Cardoso de Sá, Douglas E. V. Pires, David B. Ascher
Software Mentions: 5
Published: over 5 years ago

10.1155/2020/3598417

Effect of BRCA1 on the Concurrent Chemoradiotherapy Resistance of Cervical Squamous Cell Carcinoma Based on Transcriptome Sequencing Analysis
Cited by: 13
Author(s): Xin Wen, Lingling Shui, Manhua Cui
Software Mentions: 5
Published: about 6 years ago

10.1038/s41598-021-94761-w

Microbiome pattern of Lucilia sericata (Meigen) (Diptera: Calliphoridae) and feeding substrate in the presence of the foodborne pathogen Salmonella enterica
Cited by: 3
Author(s): Lavinia Iancu, Iulia Roxana Angelescu, Victoria Ioana Paun, Carlos Henríquez‐Castillo, Paris Lavín, Cristina Purcărea
Software Mentions: 5
Published: almost 5 years ago

10.1186/s12864-020-07313-3

The landscape of lncRNAs in Cydia pomonella provides insights into their signatures and potential roles in transcriptional regulation
Cited by: 7
Author(s): Longsheng Xing, Yu X, Xi Qiao, Cong Huang, Qiang Wu, Yang Ni, Jiao Guo, Wan‐Xue Liu, Wei Fan, Fang‐Hao Wan, Wanqiang Qian
Software Mentions: 5
Published: over 5 years ago

10.1186/s12864-021-07451-2

Multi-species transcriptome meta-analysis of the response to retinoic acid in vertebrates and comparative analysis of the effects of retinol and retinoic acid on gene expression in LMH cells
Cited by: 5
Author(s): Clemens Falker‐Gieske, Andrea Mott, Sören Franzenburg, Jens Tetens
Software Mentions: 5
Published: over 5 years ago

10.1186/s12862-021-01753-5

Rapid evolution and molecular convergence in cryptorchidism-related genes associated with inherently undescended testes in mammals
Cited by: 4
Author(s): Simin Chai, Ran Tian, Juanjuan Bi, Shixia Xu, Wenhua Ren
Software Mentions: 5
Published: over 5 years ago

10.1186/s12885-021-08115-w

Identification of PIK3CA multigene mutation patterns associated with superior prognosis in stomach cancer
Cited by: 5
Author(s): Yu Yu, Zhouqing Xie, Mingxin Zhao, Xiaohua Lian
Software Mentions: 5
Published: over 5 years ago

10.1186/s12885-020-06799-0

Development and validation of a five-immune gene prognostic risk model in colon cancer
Cited by: 37
Author(s): Haitao Chen, Jun Luo, Jingyi Guo
Software Mentions: 5
Published: about 6 years ago

10.1186/s13062-015-0051-z

Test on existence of histology subtype-specific prognostic signatures among early stage lung adenocarcinoma and squamous cell carcinoma patients using a Cox-model based filter
Cited by: 25
Author(s): Suyan Tian, Chi Wang, Ming-Wen An
Software Mentions: 5
Published: over 11 years ago

10.1186/s41606-021-00065-3

Palmitoylethanolamide for sleep disturbance. A double-blind, randomised, placebo-controlled interventional study
Cited by: 5
Author(s): Amanda Rao, Phillippa Ebelt, Alistair R. Mallard, David Briskey
Software Mentions: 5
Published: almost 5 years ago