Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1371/journal.pgen.1006587

https://doi.org/10.1371/journal.pgen.1006587

Genetic variants alter T-bet binding and gene expression in mucosal inflammatory disease

Cited by: 38
Author(s): Katrina Soderquest, Arnulf Hertweck, Claudia Giambartolomei, Stephen Henderson, Mohamed Rosmawati, Rimma Goldberg, Esperanza Perucha, Lude Franke, Javier Herrero, Vincent Plagnol, Richard G. Jenner, Graham M. Lord
Published: almost 8 years ago

Software Mentions 5

bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
bioconductor: GenomicAlignments
Representation and manipulation of short genomic alignments
Papers that mentioned: 134
bioconductor: GenomicRanges
Representation and manipulation of genomic intervals
Papers that mentioned: 323
bioconductor: snpStats
SnpMatrix and XSnpMatrix classes and methods
Papers that mentioned: 51
pypi: MACS
Model Based Analysis for ChIP-Seq data
Papers that mentioned: 1,233