10.18632/oncotarget.8192

Integrated analysis of long non-coding RNAs in human colorectal cancer
Cited by: 32
Author(s): Xiaohua Chen, Binjian Liu, Rui Yang, Yong Guo, Feng Li, Lin Wang, Hanyang Hu
Software Mentions: 5
Published: over 10 years ago

10.7717/peerj.8172

Exploring profile and potential influencers of vaginal microbiome among asymptomatic pregnant Chinese women
Cited by: 10
Author(s): Yining He, Yun Huang, Zhengyin Zhang, Fei Yu, Yuejie Zheng
Software Mentions: 5
Published: over 6 years ago

10.1136/jitc-2020-001657

Regorafenib enhances antitumor immunity via inhibition of p38 kinase/Creb1/Klf4 axis in tumor-associated macrophages
Cited by: 52
Author(s): Da-Liang Ou, Chia Wei Chen, Chia‐Lang Hsu, Chih‐Hung Chung, Zi Rui Feng, Bin Shyun Lee, Ann Lii Cheng, Muh Hwa Yang, Chiun Hsu
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pone.0246691

Predicting major bleeding among hospitalized patients using oral anticoagulants for atrial fibrillation after discharge
Cited by: 6
Author(s): Jakub Qazi, Mireille E. Schnitzer, Robert Côté, Marie-Josée Martel, Marc Dorais, Sylvie Perreault
Software Mentions: 5
Published: over 5 years ago

10.1002/gepi.22184

Constrained instruments and their application to Mendelian randomization with pleiotropy
Cited by: 13
Author(s): Lai Jiang, Karim Oualkacha, Vanessa Didelez, Antonio Ciampi, Pedro Rosa‐Neto, Andréa Lessa Benedet, Sulantha Mathotaarachchi, J. Brent Richards, Celia M.T. Greenwood
Software Mentions: 5
Published: over 7 years ago

10.1186/s12859-021-04154-z

Tamock: simulation of habitat-specific benchmark data in metagenomics
Cited by: 0
Author(s): Samuel M. Gerner, Alexandra B. Graf, Thomas Rattei
Software Mentions: 5
Published: about 5 years ago

10.1371/journal.pone.0252154

Hydrological and topographic determinants of biomass and species richness in a Mediterranean-climate shrubland
Cited by: 1
Author(s): Samantha Díaz de León-Guerrero, Rodrigo Méndez‐Alonzo, Stephen H. Bullock, Enrique R. Vivoni
Software Mentions: 5
Published: about 5 years ago

10.2196/15371

Transfer Learning for Risk Classification of Social Media Posts: Model Evaluation Study
Cited by: 21
Author(s): Derek Howard, Marta M. Maslej, Justin Lee, Jacob Ritchie, Geoffrey Woollard, Leon French
Software Mentions: 5
Published: about 6 years ago

10.1186/s12859-019-3253-z

Challenges in proteogenomics: a comparison of analysis methods with the case study of the DREAM proteogenomics sub-challenge
Cited by: 10
Author(s): Tara Eicher, Andrew Patt, Esko A. Kautto, Raghu Machiraju, Ewy A. Mathé, Yan Zhang
Software Mentions: 5
Published: over 6 years ago

10.7717/peerj.3817

Benchmarking viromics: an <i>in silico</i> evaluation of metagenome-enabled estimates of viral community composition and diversity
Cited by: 208
Author(s): Simon Roux, Joanne B. Emerson, Emiley A. Eloe‐Fadrosh, Matthew B. Sullivan
Software Mentions: 5
Published: almost 9 years ago

10.1186/1741-7007-7-70

Genetical genomic determinants of alcohol consumption in rats and humans
Cited by: 136
Author(s): Boris Tabakoff, Laura Saba, Morton P. Printz, Pam Flodman, Colin A. Hodgkinson, David Goldman, George F. Koob, H. G. Richardson, Katerina Kechris, Richard L. Bell, Norbert Hübner, Matthias Heinig, Michal Pravenec, Jonathan Mangion, Lucie Legault, M Dongier, Katherine M. Conigrave, John B. Whitfield, John B. Saunders, Bridget F. Grant, Paula L. Hoffman
Software Mentions: 5
Published: over 16 years ago

10.1186/s12862-018-1225-y

Certainty of paternity in two coucal species with divergent sex roles: the devil takes the hindmost
Cited by: 15
Author(s): Ignas Safari, Wolfgang Goymann
Software Mentions: 5
Published: almost 8 years ago

10.1111/eva.12873

A population genomics appraisal suggests independent dispersals for bitter and sweet manioc in Brazilian Amazonia
Cited by: 7
Author(s): Alessandro Alves‐Pereira, Charles R. Clement, Doriane Picanço Rodrigues, Elizabeth Ann Veasey, Gabriel Dequigiovanni, Santiago Linório Ferreyra Ramos, José Baldin Pinheiro, Anete Pereira de Souza, Maria Imaculada Zucchi
Software Mentions: 5
Published: over 6 years ago

10.7717/peerj.6192

Climatic niche evolution in the viviparous<i>Sceloporus torquatus</i>group (Squamata: Phrynosomatidae)
Cited by: 8
Author(s): Norberto Martínez‐Méndez, Omar Mejía, Jorge Ortega, Fausto R. Méndez–de la Cruz
Software Mentions: 5
Published: over 7 years ago

10.3389/fpls.2018.00641

Detailed Phytochemical Analysis of High- and Low Artemisinin-Producing Chemotypes of Artemisia annua
Cited by: 22
Author(s): Tomasz Czechowski, Tony R. Larson, Theresa M. Catania, David Harvey, Cenxi Wei, Michel Essome, Geoffrey D. Brown, Ian A. Graham
Software Mentions: 5
Published: about 8 years ago

10.1093/gigascience/giy149

PhenoMeNal: processing and analysis of metabolomics data in the cloud
Cited by: 58
Author(s): Kristian Peters, J. H. Bradbury, Sven Bergmann, Marco Capuccini, Marta Cascante, Pedro de Atauri, Timothy M. D. Ebbels, Carles Foguet, Robert C. Glen, Alejandra González-Beltrán, Ulrich L. Günther, Evangelos Handakas, Thomas Hankemeier, Kenneth Haug, Stephanie Herman, Petr Holub, Massimiliano Izzo, Daniel Jacob, David Johnson, Fabien Jourdan, Namrata Kale, Íbrahím Karaman, Bita Khalili, Payam Emami Khonsari, Kim Kultima, Samuel Lampa, Anders Larsson, Christian Ludwig, Pablo Moreno-Ger, Steffen Neumann, Jon Ander Novella, Claire O’Donovan, Jake T M Pearce, Alina Peluso, Marco Piras, Luca Pireddu, Michelle A.C. Reed, Philippe Rocca-Serra, Pierrick Roger, Antonio Rosato, Rico Rueedi, Christoph Ruttkies, Noureddin Sadawi, Reza M. Salek, Susanna-Assunta Sansone, Vitaly A. Selivanov, Ola Spjuth, Daniel Schober, Etienne Thévenot, Mattia Tomasoni, Merlijn van Rijswijk, Michael Van Vliet, Mark R. Viant, Ralf Weber, Gianluigi Zanetti, Christoph Steinbeck
Software Mentions: 5
Published: over 7 years ago

10.1177/0748730418813785

LimoRhyde: A Flexible Approach for Differential Analysis of Rhythmic Transcriptome Data
Cited by: 47
Author(s): Jordan M. Singer, Jacob J. Hughey
Software Mentions: 5
Published: over 7 years ago

10.7717/peerj.8317

Alteration of the gut microbiota associated with childhood obesity by 16S rRNA gene sequencing
Cited by: 65
Author(s): Xiaowei Chen, Haixiang Sun, Fei Jiang, Yan Shen, Xin Li, HU Xue-ju, Xiao-Min Shen, Pingmin Wei
Software Mentions: 5
Published: over 6 years ago

10.1016/j.ebiom.2021.103538

Airway microbial communities, smoking and asthma in a general population sample
Cited by: 21
Author(s): Elena Turek, Michael J. Cox, Michael Hunter, Jennie Hui, Phillip James, Saffron A.G. Willis‐Owen, Leah Cuthbertson, Alan James, A.W. Musk, Miriam F. Moffatt, William Cookson
Software Mentions: 5
Published: almost 5 years ago

10.18632/aging.102871

Prognostic value of immune-related genes in the tumor microenvironment of lung adenocarcinoma and lung squamous cell carcinoma
Cited by: 52
Author(s): Yan Qu, Bo Cheng, Ningsheng Shao, Yibin Jia, Qingxu Song, Bingxu Tan, Jianbo Wang
Software Mentions: 5
Published: over 6 years ago

10.3390/ani10122317

Traditional Usage of Wild Fauna among the Local Inhabitants of Ladakh, Trans-Himalayan Region
Cited by: 16
Author(s): Shiekh Marifatul Haq, Eduardo Soares Calixto, Umer Yaqoob, Riyaz Ahmed, Ahmed Hossam Mahmoud, Rainer W. Bussmann, Osama B. Mohammed, Khalid Ahmad, Arshad Mehmood Abbasi
Software Mentions: 5
Published: over 5 years ago

10.1186/s41512-021-00094-7

Methods for Evaluation of medical prediction Models, Tests And Biomarkers (MEMTAB) 2020 Symposium
Cited by: 0
Author(s):
Software Mentions: 5
Published: over 5 years ago

10.7717/peerj.9893

Spatial ecology of little egret (<i>Egretta garzetta</i>) in Hong Kong uncovers preference for commercial fishponds
Cited by: 5
Author(s): Chun-Chiu Pang, Yik-Hei Sung, Yun-tak Chung, Hak-king Ying, Helen Hoi Ning Fong, Yat-tung Yu
Software Mentions: 5
Published: almost 6 years ago

10.1186/s12974-019-1418-3

Correlation of alteration of HLA-F expression and clinical characterization in 593 brain glioma samples
Cited by: 36
Author(s): Enshan Feng, Tingyu Liang, Xiaoyong Wang, Juan Du, Kai Tang, Xiaoxuan Wang, Fang Wang, Guoxiang You
Software Mentions: 5
Published: over 7 years ago

10.1186/s40168-020-00823-y

Most dominant roles of insect gut bacteria: digestion, detoxification, or essential nutrient provision?
Cited by: 128
Author(s): Tianzhong Jing, Fenghui Qi, Zhiying Wang
Software Mentions: 5
Published: over 6 years ago

10.1038/s41597-019-0103-9

Multitask learning and benchmarking with clinical time series data
Cited by: 414
Author(s): Hrayr Harutyunyan, Hrant Khachatrian, David C. Kale, Greg Ver Steeg, Aram Galstyan
Software Mentions: 5
Published: about 7 years ago

10.3389/fmicb.2021.596517

Fungal Communities on Standing Litter Are Structured by Moisture Type and Constrain Decomposition in a Hyper-Arid Grassland
Cited by: 11
Author(s): Jim Logan, Kathryn M. Jacobson, Peter J. Jacobson, Sarah E. Evans
Software Mentions: 5
Published: over 5 years ago

10.1186/1471-2164-15-1048

Genomic selection accuracies within and between environments and small breeding groups in white spruce
Cited by: 86
Author(s): Jean Beaulieu, Trevor Doerksen, John Mackay, André Rainville, Jean Bousquet
Software Mentions: 5
Published: over 12 years ago

10.1186/gb-2014-15-3-r41

Dynamics of chromatin accessibility and gene regulation by MADS-domain transcription factors in flower development
Cited by: 205
Author(s): Alice Pajoro, Pedro Madrigal, Jose M. Muiño, José Tomás Matus, Jiaxin Jin, Martín A. Mecchia, Juan M. Debernardi, Javier F. Palatnik, Salma Balazadeh, Muhammad Arif, Diarmuid S. Ó’Maoiléidigh, Frank Wellmer, Paweł Krajewski, José Luis Riechmann, Gerco C. Angenent, Kerstin Kaufmann
Software Mentions: 5
Published: over 12 years ago

10.1002/ece3.6103

Metacommunity Structure of Stream Insects across Three Hierarchical Spatial scales
Cited by: 12
Author(s): Siwen He, Janne Soininen, Guiping Deng, Beixin Wang
Software Mentions: 5
Published: over 6 years ago

10.1002/ece3.2601

Evaluating citizen science data for forecasting species responses to national forest management
Cited by: 29
Author(s): Louise Mair, Philip J. Harrison, Mari Jönsson, Swantje Löbel, Jenni Nordén, Juha Siitonen, Tomas Lämås, Anders Lundström, Tord Snäll
Software Mentions: 5
Published: over 9 years ago

10.2196/14609

Hospital-Based Back Surgery: Geospatial-Temporal, Explanatory, and Predictive Models
Cited by: 5
Author(s): Lawrence V. Fulton, Clemens Scott Kruse
Software Mentions: 5
Published: over 6 years ago

10.1128/mSphere.01263-20

Genes Influencing Phage Host Range in Staphylococcus aureus on a Species-Wide Scale
Cited by: 17
Author(s): Abraham G Moller, Kyle Winston, Sang Yong Ji, Junting Wang, Michelle N. Hargita Davis, Claudia Solís-Lemus, Timothy D. Read
Software Mentions: 5
Published: over 5 years ago

10.3389/fcimb.2018.00301

Comparison of Fecal Collection Methods for Microbiome and Metabolomics Studies
Cited by: 105
Author(s): Zheng Wang, Christine P. Zolnik, Yunping Qiu, Mykhaylo Usyk, Tao Wang, Howard D. Strickler, Carmen R. Isasi, Robert C. Kaplan, Irwin J. Kurland, Qibin Qi, Robert D. Burk
Software Mentions: 5
Published: almost 8 years ago

10.1186/s13619-021-00092-6

Coordination of EZH2 and SOX2 specifies human neural fate decision
Cited by: 3
Author(s): Yuan Zhao, Tianyu Wang, Yanqi Zhang, Liang Shi, Cong Zhang, Jingyuan Zhang, Jiao Yao, Qianyu Chen, Xiaofen Zhong, Yanxing Wei, Yongli Shan, Guangjin Pan
Software Mentions: 5
Published: almost 5 years ago

10.3389/fgene.2021.648701

Multiomics Analysis Reveals Molecular Abnormalities in Granulosa Cells of Women With Polycystic Ovary Syndrome
Cited by: 14
Author(s): Ru-Song Zhao, Yonghui Jiang, Shigang Zhao, Han Zhao
Software Mentions: 5
Published: about 5 years ago

10.7554/eLife.57683

EHMT2 epigenetically suppresses Wnt signaling and is a potential target in embryonal rhabdomyosarcoma
Cited by: 14
Author(s): Ananya Pal, Jia Yu Leung, Gareth Chin Khye Ang, Vinay Kumar Rao, Luca Pignata, Huey Jin Lim, Maxime Hebrard, Kenneth Tou En Chang, Victor Kwan Min Lee, Ernesto Guccione, Reshma Taneja
Software Mentions: 5
Published: over 5 years ago

10.1002/prp2.424

Pharmacokinetics of metformin in patients with chronic kidney disease stage 4 and metformin-naïve type 2 diabetes
Cited by: 9
Author(s): Ajith Dissanayake, Mark C. Wheldon, Chris Hood
Software Mentions: 5
Published: almost 8 years ago

10.1371/journal.pone.0246809

Resource selection of a nomadic ungulate in a dynamic landscape
Cited by: 4
Author(s): Theresa S. M. Stratmann, Nandintsetseg Dejid, Justin M. Calabrese, William F. Fagan, Christen H. Fleming, Kirk A. Olson, Thomas Mueller
Software Mentions: 5
Published: over 5 years ago

10.1186/s13072-019-0285-6

H3K4me2 functions as a repressive epigenetic mark in plants
Cited by: 46
Author(s): Kun Wang, Kunpeng Liu, Liufan Yin, Yu Yu, Ji Qi, Wen‐Hui Shen, Jun Zhu, Yijing Zhang, Dong Ao
Software Mentions: 5
Published: about 7 years ago

10.1186/s12859-019-2728-2

UTAP: User-friendly Transcriptome Analysis Pipeline
Cited by: 88
Author(s): Refael Kohen, Jonathan Barlev, Gil Hornung, Gil Stelzer, Ester Feldmesser, Kiril Kogan, Marilyn Safran, Dena Leshkowitz
Software Mentions: 5
Published: over 7 years ago

10.3389/fgene.2019.00277

Genome-Wide Identification of Histone Modifications Involved in Placental Development in Pigs
Cited by: 19
Author(s): Kun Han, Ruimin Ren, Jianhua Cao, Shuhong Zhao, Mei Yu
Software Mentions: 5
Published: over 7 years ago

10.1186/s13059-017-1302-3

Extensive transcriptomic and epigenomic remodelling occurs during Arabidopsis thaliana germination
Cited by: 127
Author(s): Reena Narsai, Quentin Gouil, David Secco, Akanksha Srivastava, Yuliya V. Karpievitch, Lim Chee Liew, Ryan Lister, Mathew G. Lewsey, James Whelan
Software Mentions: 5
Published: almost 9 years ago

10.3389/fgene.2019.00684

Increase in DNA Damage by MYCN Knockdown Through Regulating Nucleosome Organization and Chromatin State in Neuroblastoma
Cited by: 3
Author(s): Xinjie Hu, Weisheng Zheng, Qianshu Zhu, Liang Gu, Yanhua Du, Zhe Han, Xiaobai Zhang, Daniel Carter, Belamy B. Cheung, Andong Qiu, Cizhong Jiang
Software Mentions: 5
Published: almost 7 years ago

10.1186/s13321-018-0312-9

MER: a shell script and annotation server for minimal named entity recognition and linking
Cited by: 27
Author(s): Francisco M. Couto, André Lamúrias
Software Mentions: 5
Published: over 7 years ago

10.1186/s12864-021-07774-0

Chromatin accessibility profiling in Neurospora crassa reveals molecular features associated with accessible and inaccessible chromatin
Cited by: 10
Author(s): Aileen R Ferraro, Abigail J Ameri, Zefu Lu, Masayuki Kamei, Robert J. Schmitz, Zachary A. Lewis
Software Mentions: 5
Published: about 5 years ago

10.1038/s42003-018-0041-7

Ecology determines how low antibiotic concentration impacts community composition and horizontal transfer of resistance genes
Cited by: 65
Author(s): Johannes Cairns, Lasse Ruokolainen, Jenni Hultman, Manu Tamminen, Marko Virta, Teppo Hiltunen
Software Mentions: 5
Published: about 8 years ago

10.1371/journal.pone.0238972

India nudges to contain COVID-19 pandemic: A reactive public policy analysis using machine-learning based topic modelling
Cited by: 58
Author(s): Ramit Debnath, Ronita Bardhan
Software Mentions: 5
Published: almost 6 years ago

10.1371/journal.pone.0182507

A comprehensive simulation study on classification of RNA-Seq data
Cited by: 26
Author(s): Gökmen Zararsız, Dinçer Göksülük, Selçuk Korkmaz, Vahap Eldem, Gözde Ertürk Zararsız, İzzet Paruğ Duru, Ahmet Öztürk
Software Mentions: 5
Published: almost 9 years ago

10.1186/s12864-020-07300-8

Rapid single cell evaluation of human disease and disorder targets using REVEAL: SingleCell™
Cited by: 2
Author(s): Namit Kumar, Ryan Golhar, Kriti Sen Sharma, James L. Holloway, Srikant Sarangi, Isaac M. Neuhaus, Alice M. Walsh, Zachary W. Pitluk
Software Mentions: 5
Published: over 5 years ago

10.1038/s42003-020-1001-6

Mutually suppressive roles of KMT2A and KDM5C in behaviour, neuronal structure, and histone H3K4 methylation
Cited by: 25
Author(s): Christina N Vallianatos, Brynne Raines, Robert S. Porter, Katherine M Bonefas, Michael C. Wu, Patricia M. Garay, Katie M. Collette, Young Ah Seo, Yali Dou, Catherine E. Keegan, Natalie C. Tronson, Shigeki Iwase
Software Mentions: 5
Published: about 6 years ago

10.3389/fcell.2021.662707

PLXNC1: A Novel Potential Immune-Related Target for Stomach Adenocarcinoma
Cited by: 12
Author(s): Zhizhan Ni, Chenshen Huang, Hongmei Zhao, Jinzhe Zhou, Muren Hu, Qing Chen, Bujun Ge, Qi Huang
Software Mentions: 5
Published: about 5 years ago

10.3389/fncel.2020.00131

Loss of Arid1a Promotes Neuronal Survival Following Optic Nerve Injury
Cited by: 3
Author(s): Xue-Qi Peng, Shang-Kun Dai, Changping Li, Peipei Li, Zhimeng Wang, Heng Du, Zhao‐Qian Teng, Shuguang Yang, Chang‐Mei Liu
Software Mentions: 5
Published: about 6 years ago

10.3390/ani11010223

Equine Transport-Related Problem Behaviors and Injuries: A Survey of Italian Horse Industry Members
Cited by: 11
Author(s): Francesca Dai, Martina Zappaterra, Michela Minero, Francesca Bocchini, Christopher B. Riley, Barbara Padalino
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.ppat.1009441

Viral infection of human neurons triggers strain-specific differences in host neuronal and viral transcriptomes
Cited by: 8
Author(s): Colleen A. Mangold, Molly M. Rathbun, Daniel W. Renner, Chad V. Kuny, Moriah L. Szpara
Software Mentions: 5
Published: over 5 years ago

10.1107/S1399004714028132

FEM: feature-enhanced map
Cited by: 155
Author(s): Pavel V. Afonine, Nigel W. Moriarty, Marat Mustyakimov, Oleg Sobolev, Thomas C. Terwilliger, Dušan Turk, Alexandre Urzhumtsev, Paul D. Adams
Software Mentions: 5
Published: over 11 years ago

10.1371/journal.pone.0179726

Genome-wide association analysis identifies genetic correlates of immune infiltrates in solid tumors
Cited by: 166
Author(s): Nathan O. Siemers, James L. Holloway, Chang Han, Scott D. Chasalow, Petra Ross‐Macdonald, Charles F. Voliva, Joseph D. Szustakowski
Software Mentions: 5
Published: almost 9 years ago

10.3390/ijms22115876

Oral Microbiome in Relation to Periodontitis Severity and Systemic Inflammation
Cited by: 31
Author(s): Adelina S. Plachokova, Sergio Andreu‐Sánchez, Marlies P. Noz, Jingyuan Fu, Niels P. Riksen
Software Mentions: 5
Published: about 5 years ago

10.1186/s12859-020-03917-4

ped_draw: pedigree drawing with ease
Cited by: 2
Author(s): Matt Velinder, Dillon Lee, Gábor Marth
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pcbi.1008457

Searching through functional space reveals distributed visual, auditory, and semantic coding in the human brain
Cited by: 4
Author(s): Sreejan Kumar, Cameron T. Ellis, Thomas O’Connell, Marvin M. Chun, Nicholas B. Turk‐Browne
Software Mentions: 5
Published: over 5 years ago

10.1038/s41598-020-69525-7

Evolutionary trends of the conserved neurocranium shape in angel sharks (Squatiniformes, Elasmobranchii)
Cited by: 4
Author(s): Faviel A. López‐Romero, Sebastian Stumpf, Cathrin Pfaff, Giuseppe Marramà, Zerina Johanson, Jürgen Kriwet
Software Mentions: 5
Published: almost 6 years ago

10.1186/s12915-021-00996-4

Reorganization of the 3D chromatin architecture of rice genomes during heat stress
Cited by: 39
Author(s): Zhe Liang, Qian Zhang, Changmian Ji, Guihua Hu, Pingxian Zhang, Yifan Wang, Liwen Yang, Xiaofeng Gu
Software Mentions: 5
Published: over 5 years ago

10.1186/s12879-016-1702-0

The role of hand hygiene in controlling norovirus spread in nursing homes
Cited by: 21
Author(s): Rania Assab, Laura Temime
Software Mentions: 5
Published: almost 10 years ago

10.1177/2396987320953394

Long-term prognosis after intracerebral haemorrhage
Cited by: 10
Author(s): Koen M. van Nieuwenhuizen, Ilonca Vaartjes, Jamie I Verhoeven, Gabriël J.E. Rinkel, L. Jaap Kappelle, Floris H.B.M. Schreuder, Catharina J.M. Klijn
Software Mentions: 5
Published: almost 6 years ago

10.1002/ece3.4006

Low acclimation capacity of narrow‐ranging thermal specialists exposes susceptibility to global climate change
Cited by: 40
Author(s): Tricia M. Markle, Kenneth H. Kozak
Software Mentions: 5
Published: about 8 years ago

10.1371/journal.pone.0229486

Interpreting nonverbal cues to deception in real time
Cited by: 4
Author(s): Josiah King, Jia E. Loy, Hannah Rohde, Martin Corley
Software Mentions: 5
Published: over 6 years ago

10.3390/jpm11010011

Pharmacogenomics at the Point of Care: A Community Pharmacy Project in British Columbia
Cited by: 12
Author(s): Samantha Breaux, Francis Arthur Derek Desrosiers, Mauricio Neira, Sunita Sinha, Corey Nislow
Software Mentions: 5
Published: over 5 years ago

10.1186/1471-2105-9-219

ConStruct: Improved construction of RNA consensus structures
Cited by: 36
Author(s): Andreas Wilm, Kornelia Linnenbrink, Gerhard Steger
Software Mentions: 5
Published: about 18 years ago

10.1038/s41598-019-46225-5

Comparative Brain Morphology of the Greenland and Pacific Sleeper Sharks and its Functional Implications
Cited by: 16
Author(s): Kara E. Yopak, Bailey C. McMeans, Christopher G. Mull, Kirk W. Feindel, Kit M. Kovacs, Christian Lydersen, Aaron T. Fisk, Shaun P. Collin
Software Mentions: 5
Published: almost 7 years ago

10.1038/s41598-018-36246-x

Evolutionary dynamics of sexual size dimorphism in non-volant mammals following their independent colonization of Madagascar
Cited by: 9
Author(s): Peter M. Kappeler, Charles L. Nunn, Alexander Q. Vining, Steven M. Goodman
Software Mentions: 5
Published: over 7 years ago

10.1371/journal.pone.0140761

Relation between Water Balance and Climatic Variables Associated with the Geographical Distribution of Anurans
Cited by: 25
Author(s): Braz Titon, Fernando Ribeiro Gomes
Software Mentions: 5
Published: over 10 years ago

10.3390/genes11121512

You Had Me at “MAGIC”!: Four Barley MAGIC Populations Reveal Novel Resistance QTL for Powdery Mildew
Cited by: 13
Author(s): Fluturë Novakazi, Lene Krusell, J. Jensen, Jihad Orabi, A. Jahoor, Tommy Bengtsson
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pone.0164532

The Evolutionary Basis of Naturally Diverse Rice Leaves Anatomy
Cited by: 23
Author(s): Jolly Chatterjee, Jacqueline Dionora, Abigail Elmido-Mabilangan, Samart Wanchana, Vivek Thakur, Anindya Bandyopadhyay, D. S. Brar, W. Paul Quick
Software Mentions: 5
Published: over 9 years ago

10.1371/journal.pone.0088805

Molecular Phylogenetics and Temporal Diversification in the Genus Aeromonas Based on the Sequences of Five Housekeeping Genes
Cited by: 13
Author(s): J. Gaspar Lorén, Maribel Farfán, M. Carmen Fusté
Software Mentions: 5
Published: over 12 years ago

10.3390/nu10091332

Human Milk Casein and Whey Protein and Infant Body Composition over the First 12 Months of Lactation
Cited by: 28
Author(s): Zoya Gridneva, Wan Jun Tie, Alethea Rea, Ching Tat Lai, Leigh C. Ward, Kevin Murray, Peter Hartmann, Donna T. Geddes
Software Mentions: 5
Published: almost 8 years ago

10.1002/cam4.3289

Predicting biomarkers from classifier for liver metastasis of colorectal adenocarcinomas using machine learning models
Cited by: 12
Author(s): Shuwen Han, Yang Xi, Qing Zhou, Zhuang Jing, Wei Wu
Software Mentions: 5
Published: almost 6 years ago

10.1371/journal.pone.0188430

Diversification rates, host plant shifts and an updated molecular phylogeny of Andean Eois moths (Lepidoptera: Geometridae)
Cited by: 14
Author(s): Patrick Strutzenberger, Gunnar Brehm, Brigitte Gottsberger, Florian Bodner, Carlo L. Seifert, Konrad Fiedler
Software Mentions: 5
Published: over 8 years ago

10.1371/journal.pone.0089632

Episodic Positive Selection in the Evolution of Avian Toll-Like Receptor Innate Immunity Genes
Cited by: 85
Author(s): Catherine E. Grueber, Graham P. Wallis, Ian G. Jamieson
Software Mentions: 5
Published: over 12 years ago

10.1371/journal.pone.0255241

Detecting joint attention events in mother-infant dyads: Sharing looks cannot be reliably identified by naïve third-party observers
Cited by: 2
Author(s): Kirsty E. Graham, Joanna C. Buryn-Weitzel, Nicole J Lahiff, Claudia Wilke, Katie E. Slocombe
Software Mentions: 5
Published: almost 5 years ago

10.7554/eLife.67518

The structure of photosystem I from a high-light-tolerant cyanobacteria
Cited by: 13
Author(s): Zachary Dobson, Safa Ahad, Jackson Vanlandingham, Hila Toporik, Natalie Vaughn, Michael Vaughn, Dewight Williams, Michael Reppert, Petra Fromme, Yuval Mazor
Software Mentions: 5
Published: almost 5 years ago

10.3390/nu12113425

Dietary Patterns, Their Nutrients, and Associations with Socio-Demographic and Lifestyle Factors in Older New Zealand Adults
Cited by: 10
Author(s): Karen Mumme, Cathryn A. Conlon, Pamela von Hurst, Beatrix Jones, Welma Stonehouse, Anne‐Louise M Heath, Jane Coad, Crystal F. Haskell-Ramsay, Jamie V. de Seymour, Kathryn Beck
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pone.0222527

Bacterial diversity in Icelandic cold spring sources and in relation to the groundwater amphipod Crangonyx islandicus
Cited by: 7
Author(s): Ragnhildur Guðmundsdóttir, Agnes-Katharina Kreiling, Bjarni K. Kristjánsson, V. Marteinsson, Snæbjörn Pálsson
Software Mentions: 5
Published: almost 7 years ago

10.7717/peerj.6660

Music-performance regulates microRNAs in professional musicians
Cited by: 7
Author(s): Preethy Sasidharan Nair, Tuire Kuusi, Minna Ahvenainen, Anju K. Philips, Irma Järvelä
Software Mentions: 5
Published: over 7 years ago

10.1371/journal.pone.0165815

The Impact of Tree Diversity on Different Aspects of Insect Herbivory along a Global Temperature Gradient - A Meta-Analysis
Cited by: 40
Author(s): Stephan Kambach, Ingolf Kühn, Bastien Castagneyrol, Helge Bruelheide
Software Mentions: 5
Published: over 9 years ago

10.3390/v12091027

Novel Circoviruses Detected in Feces of Sonoran Felids
Cited by: 8
Author(s): Natalie Payne, Simona Kraberger, Rafaela S. Fontenele, Kara Schmidlin, Melissa Bergeman, Ivonne Cassaigne, Melanie Culver, Arvind Varsani, Koenraad Van Doorslaer
Software Mentions: 5
Published: almost 6 years ago

10.7554/eLife.33480

Determining the genetic basis of anthracycline-cardiotoxicity by molecular response QTL mapping in induced cardiomyocytes
Cited by: 86
Author(s): David A. Knowles, Courtney K Burrows, John Blischak, Kristen Patterson, Daniel J. Serie, Nadine Norton, Carole Ober, Jonathan K. Pritchard, Yoav Gilad
Software Mentions: 5
Published: about 8 years ago

10.1038/s41598-019-48493-7

Non-parametric combination analysis of multiple data types enables detection of novel regulatory mechanisms in T cells of multiple sclerosis patients
Cited by: 13
Author(s): Sunjay Jude Fernandes, Hiromasa Morikawa, Ewoud Ewing, Sabrina Ruhrmann, Rubin Narayan Joshi, Vincenzo Lagani, Nestoras Karathanasis, Mohsen Khademi, Núria Planell, Angelika Schmidt, Ioannis Tsamardinos, Tomas Olsson, Fredrik Piehl, Ingrid Kockum, Maja Jagodic, Jesper Tegnér, David Green
Software Mentions: 5
Published: almost 7 years ago

10.7554/eLife.36967

Topography of cancer-associated immune cells in human solid tumors
Cited by: 187
Author(s): Jakob Nikolas Kather, Meggy Suarez-Carmona, Pornpimol Charoentong, Cleo–Aron Weis, Daniela Hirsch, Peter Bankhead, Marcel Horning, Dyke Ferber, Ivan Kel, Esther Herpel, Sarah Schott, Inka Zörnig, Jochen Utikal, Alexander Marx, Timo Gaiser, Hermann Brenner, Jenny Chang‐Claude, Michael Hoffmeister, Dirk Jäger, Niels Halama
Software Mentions: 5
Published: almost 8 years ago

10.1371/journal.pone.0213066

HIV-related posts from a Chinese internet discussion forum: An exploratory study
Cited by: 7
Author(s): Yuan Dong, Xin Zhou, Yi‐Han Lin, Qichao Pan, Ying Wang
Software Mentions: 5
Published: over 7 years ago

10.3390/life11020172

Integrative Analysis Identified Key Schizophrenia Risk Factors from an Abnormal Behavior Mouse Gene Set
Cited by: 1
Author(s): Chen Miao, Weidi Wang, Weichen Song, Wei Qian, Guan Ning Lin
Software Mentions: 5
Published: over 5 years ago

10.3389/fmicb.2018.02721

Compounded Disturbance Chronology Modulates the Resilience of Soil Microbial Communities and N-Cycle Related Functions
Cited by: 14
Author(s): Kadiya Calderón, Laurent Philippot, Florian Bizouard, Marie-Christine Breuil, David Bru, Aymé Spor
Software Mentions: 5
Published: over 7 years ago

10.1186/s12885-021-08635-5

Clinical application of whole transcriptome sequencing for the classification of patients with acute lymphoblastic leukemia
Cited by: 12
Author(s): Wencke Walter, Rabia Shahswar, Anna Stengel, Manja Meggendorfer, Wolfgang Kern, Torsten Haferlach, Claudia Haferlach
Software Mentions: 5
Published: almost 5 years ago

10.3389/fpls.2019.01412

Linking Aboveground Traits to Root Traits and Local Environment: Implications of the Plant Economics Spectrum
Cited by: 37
Author(s): Yong Shen, Gregory S. Gilbert, Wenbin Li, Fei Miao, Hong Lu, Shanshan Yu
Software Mentions: 5
Published: over 6 years ago

10.1093/molbev/msaa309

A New Catalog of Structural Variants in 1,301 <i>A. thaliana</i> Lines from Africa, Eurasia, and North America Reveals a Signature of Balancing Selection at Defense Response Genes
Cited by: 22
Author(s): Mehmet Göktay, Andrea Fulgione, Angela M. Hancock
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pcbi.1008819

Boosting GWAS using biological networks: A study on susceptibility to familial breast cancer
Cited by: 3
Author(s): Héctor Climente-González, Christine Lonjou, Fabienne Lesueur, Dominique Stoppa‐Lyonnet, Nadine Andrieu, Chloé-Agathe Azencott
Software Mentions: 5
Published: over 5 years ago

10.1172/jci.insight.144294

The MUC5B-associated variant rs35705950 resides within an enhancer subject to lineage- and disease-dependent epigenetic remodeling
Cited by: 20
Author(s): Fabienne Gally, Sarah K. Sasse, Jonathan S. Kurche, Margaret Gruca, Jonathan Cardwell, Tsukasa Okamoto, Hong Wei Chu, Xiaomeng Hou, Olivier Poirion, Justin Buchanan, Sebastian Preißl, Bing Ren, Sean P. Colgan, Robin D. Dowell, Ivana V. Yang, David A. Schwartz, Anthony N. Gerber
Software Mentions: 5
Published: over 5 years ago

10.1186/s12866-020-01884-7

Diversity and distribution of marine heterotrophic bacteria from a large culture collection
Cited by: 24
Author(s): Isabel Sanz-Sáez, Guillem Salazar, Pablo Sánchez, Elena Lara, Marta Royo-Llonch, Elisabet L. Sà, Teresa Lucena, María J. Pujalte, Dolors Vaqué, Carlos M. Duarte, Josep M. Gasol, Carlos Pedrós‐Alió, Olga Sánchez, Silvia G. Acinas
Software Mentions: 5
Published: almost 6 years ago

10.1371/journal.pone.0164865

Effects of Secondary Hyperparathyroidism Treatment on Improvement in Anemia: Results from the MBD-5D Study
Cited by: 23
Author(s): Motoko Tanaka, Kazuki Yoshida, Shingo Fukuma, Kazuko Ito, Kazutaka Matsushita, Masafumi Fukagawa, Shunichi Fukuhara, Tadao Akizawa
Software Mentions: 5
Published: over 9 years ago

10.1371/journal.pone.0086272

Robust Regression Analysis of Copy Number Variation Data based on a Univariate Score
Cited by: 4
Author(s): Glen A. Satten, Andrew S. Allen, Morna Ikeda, Jennifer G. Mullé, Stephen T. Warren
Software Mentions: 5
Published: over 12 years ago

10.1172/jci.insight.146196

Epigenetic modifications precede molecular alterations and drive human hepatocarcinogenesis
Cited by: 9
Author(s): Carolin Czauderna, Alicia Poplawski, Colm J. O’Rourke, Darko Castven, Benjamín Pérez-Aguilar, Diana Becker, Markus M. Nöthen, Margarete Odenthal, W Amer, M Schmiel, Uta Drebber, Harald Binder, Dirk A. Ridder, Mario Schindeldecker, Beate K. Straub, Peter R. Galle, Jesper B. Andersen, Snorri S. Thorgeirsson, Young Nyun Park, Jens U. Marquardt
Software Mentions: 5
Published: almost 5 years ago