10.7150/ijbs.61441

Multi-omics Analysis of Ferroptosis Regulation Patterns and Characterization of Tumor Microenvironment in Patients with Oral Squamous Cell Carcinoma
Cited by: 17
Author(s): Wenchao Gu, Mai Kim, Lei Wang, Zongcheng Yang, Takahito Nakajima, Yoshito Tsushima
Software Mentions: 6
Published: over 5 years ago

10.1038/s42003-020-01476-1

Single-cell analysis supports a luminal-neuroendocrine transdifferentiation in human prostate cancer
Cited by: 58
Author(s): Baijun Dong, Juju Miao, Yanqing Wang, Wenqin Luo, Zhongzhong Ji, Huadong Lai, Man Zhang, Xiaomu Cheng, Jinming Wang, Yuxiang Fang, Helen He Zhu, Chee Wai Chua, Liancheng Fan, Yao Zhu, Jiahua Pan, Jia Wang, Wei Xue, Wei‐Qiang Gao
Software Mentions: 6
Published: over 5 years ago

10.1128/mBio.01037-19

Reprogramming of Small Noncoding RNA Populations in Peripheral Blood Reveals Host Biomarkers for Latent and Active Mycobacterium tuberculosis Infection
Cited by: 24
Author(s): Leonardo Silva de Araujo, Marcelo Ribeiro-Alves, Thyago Leal-Calvo, Janaina Aparecida Medeiros Leung, Verónica Durán, Mohamed Samir, Steven R. Talbot, Aravind Tallam, Fernanda Carvalho de Queiroz Mello, Robert Geffers, Maria Helena Féres Saad, Frank Peßler
Software Mentions: 6
Published: over 6 years ago

10.1099/vir.0.045351-0

Evolution of the hepatitis E virus hypervariable region
Cited by: 34
Author(s): Donald B. Smith, Jeff Vanek, Sandeep Ramalingam, Ingólfur Johannessen, Kate Templeton, Peter Simmonds
Software Mentions: 6
Published: over 13 years ago

10.1038/s41598-021-91382-1

RUNX1 and REXO2 are associated with the heterogeneity and prognosis of IDH wild type lower grade glioma
Cited by: 11
Author(s): Haiwei Wang, Xinrui Wang, Liangpu Xu, Ji Zhang, Hua Cao
Software Mentions: 6
Published: about 5 years ago

10.2196/21855

Health Care Providers’ Performance, Mindset, and Attitudes Toward a Neonatal Resuscitation Computer-Based Simulator: Empirical Study
Cited by: 5
Author(s): Maria Cutumisu, Simran K. Ghoman, Chang Lu, Sachin Patel, Catalina Garcia-Hidalgo, Caroline Fray, Matthew Brown, Russell Greiner, Georg M. Schmölzer
Software Mentions: 6
Published: over 5 years ago

10.1038/s42003-020-01616-7

Gene regulatory networks controlling differentiation, survival, and diversification of hypothalamic Lhx6-expressing GABAergic neurons
Cited by: 24
Author(s): Dong Won Kim, Kai Li, Zoe Qianyi Wang, Yi Stephanie Zhang, Abhijith Bathini, Matthew Brown, Sonia Hao Lin, Parris Whitney Washington, Cuiyun Sun, Susan Lindtner, Bora Lee, Hong Wang, Tomomi Shimogori, John L.R. Rubenstein, Seth Blackshaw
Software Mentions: 6
Published: over 5 years ago

10.1371/journal.pone.0102610

Potential Therapeutic Targets for Oral Cancer: ADM, TP53, EGFR, LYN, CTLA4, SKIL, CTGF, CD70
Cited by: 28
Author(s): Saurabh Bundela, Anjana Sharma, Prakash S. Bisen
Software Mentions: 6
Published: almost 12 years ago

10.3389/fgene.2018.00358

Epigenome-Wide Analyses Identify Two Novel Associations With Recurrent Stroke in the Vitamin Intervention for Stroke Prevention Clinical Trial
Cited by: 12
Author(s): Nicole M. Davis Armstrong, Weimin Chen, Michael S. Brewer, Stephen R. Williams, Michèle M. Sale, Bradford B. Worrall, Keith L. Keene
Software Mentions: 6
Published: almost 8 years ago

10.3390/v13020244

HIV-1 Infection Transcriptomics: Meta-Analysis of CD4+ T Cells Gene Expression Profiles
Cited by: 5
Author(s): Antônio Victor Campos Coelho, Rossella Gratton, João Paulo Britto de Melo, José Leandro Andrade‐Santos, Rafael Lima Guimarães, Sérgio Crovella, Paola Maura Tricarico, Lucas André Cavalcanti Brandão
Software Mentions: 6
Published: over 5 years ago

10.1371/journal.pgen.1008546

Chromatin accessibility established by Pou5f3, Sox19b and Nanog primes genes for activity during zebrafish genome activation
Cited by: 53
Author(s): Máté Pálfy, G Schulze, Eivind Valen, Nadine L. Vastenhouw
Software Mentions: 6
Published: over 6 years ago

10.5334/jors.179

GENESIS – The GENEric SImulation System for Modelling State Transitions
Cited by: 0
Author(s): Matthew Gillman
Software Mentions: 6
Published: almost 9 years ago

10.1016/j.dib.2020.105767

BEHACOM - a dataset modelling users’ behaviour in computers
Cited by: 2
Author(s): Pedro Miguel Sánchez Sánchez, José María Jorquera Valero, Mattia Zago, Alberto Huertas Celdrán, Lorenzo Fernández Maimó, Eduardo López Bernal, Sergio López Bernal, Javier Martínez Valverde, Pantaleone Nespoli, Javier Pastor-Galindo, Ángel Luis Perales Gómez, Manuel Gil Pérez, Gregorio Martínez Pérez
Software Mentions: 6
Published: almost 6 years ago

10.1186/s13071-018-2960-z

Detection of Plasmodium berghei infected Anopheles stephensi using near-infrared spectroscopy
Cited by: 26
Author(s): Pedro M. Esperança, Andrew M. Blagborough, Dari F. Da, Floyd E. Dowell, Thomas S. Churcher
Software Mentions: 6
Published: about 8 years ago

10.1186/s12859-019-2840-3

m6Acomet: large-scale functional prediction of individual m6A RNA methylation sites from an RNA co-methylation network
Cited by: 30
Author(s): Xiangyu Wu, Zhen Wei, Kunqi Chen, Qing Zhang, Jionglong Su, Hui Liu, Lin Zhang, Jia Meng
Software Mentions: 6
Published: about 7 years ago

10.1186/s12918-018-0620-8

Module-detection approaches for the integration of multilevel omics data highlight the comprehensive response of Aspergillus fumigatus to caspofungin
Cited by: 11
Author(s): Theresia Conrad, Olaf Kniemeyer, Sebastian Henkel, Thomas Krüger, Derek J. Mattern, Vito Valiante, Reinhard Guthke, Ilse D. Jacobsen, Axel A. Brakhage, Sebastian Vlaic, Jörg Linde
Software Mentions: 6
Published: over 7 years ago

10.1186/1471-2164-10-439

Relative power and sample size analysis on gene expression profiling data
Cited by: 64
Author(s): Maarten van Iterson, Peter A C ‘t Hoen, Paola Pedotti, Guido Hooiveld, Johan T. den Dunnen, Gjb van Ommen, JM Boer, R.M. Menezes
Software Mentions: 6
Published: almost 17 years ago

10.1038/s41598-020-70259-9

liputils: a Python module to manage individual fatty acid moieties from complex lipids
Cited by: 3
Author(s): Stefano Manzini, M. Busnelli, A Colombo, Mostafa Kiamehr, Giulia Chiesa
Software Mentions: 6
Published: almost 6 years ago

10.3390/cancers12113457

Exploring the Role of Osteosarcoma-Derived Extracellular Vesicles in Pre-Metastatic Niche Formation and Metastasis in the 143-B Xenograft Mouse Osteosarcoma Model
Cited by: 19
Author(s): Alekhya Mazumdar, Joaquín Urdínez, Aleksandar Boro, Matthias Arlt, Fabian E. Egli, Barbara Niederöst, Patrick K. Jaeger, Greta Moschini, Roman Muff, Bruno Fuchs, Jess G. Snedeker, Ana Gvozdenovic
Software Mentions: 6
Published: over 5 years ago

10.1371/journal.pone.0251653

Minimally invasive brain injections for viral-mediated transgenesis: New tools for behavioral genetics in sticklebacks
Cited by: 2
Author(s): Noelle James, Alison M. Bell
Software Mentions: 6
Published: about 5 years ago

10.1186/s12864-020-07182-w

nanotatoR: a tool for enhanced annotation of genomic structural variants
Cited by: 4
Author(s): Surajit Bhattacharya, Hayk Barseghyan, Emmanuèle C. Délot, Éric Vilain
Software Mentions: 6
Published: over 5 years ago

10.3389/fmicb.2018.02137

Traditional Norwegian Kveik Are a Genetically Distinct Group of Domesticated Saccharomyces cerevisiae Brewing Yeasts
Cited by: 36
Author(s): Richard Preiss, Caroline Tyrawa, Kristoffer Krogerus, Lars Marius Garshol, George van der Merwe
Software Mentions: 6
Published: almost 8 years ago

10.1038/s41598-020-74567-y

Impact of RNA-seq data analysis algorithms on gene expression estimation and downstream prediction
Cited by: 11
Author(s): Tong Li, Po-Yen Wu, John H. Phan, Hamid R Hassazadeh, Weida Tong, May D. Wang
Software Mentions: 6
Published: over 5 years ago

10.1371/journal.pone.0221934

Stability and changes in the distribution of Pipiza hoverflies (Diptera, Syrphidae) in Europe under projected future climate conditions
Cited by: 9
Author(s): Dubravka Milić, Snežana Radenković, Dimitrije Radišić, Andrijana Andrić, Tijana Nikolić, Ante Vujić
Software Mentions: 6
Published: almost 7 years ago

10.1111/jcmm.16374

Identification of immune microenvironment subtypes that predicted the prognosis of patients with ovarian cancer
Cited by: 4
Author(s): Xinjing Wang, Xiaoduan Li
Software Mentions: 6
Published: over 5 years ago

10.1080/21623945.2019.1595269

Transcriptome profiling reveals association of peripheral adipose tissue pathology with type-2 diabetes in Asian Indians
Cited by: 17
Author(s): Aditya Saxena, Prabhat Tiwari, Nitin Wahi, Arpana Soni, Ram Chandra Bansiwal, Anshul Kumar, Balram Sharma, Prakash P Punjabi, Nidhi Gupta, Babita Malik, Krishna Mohan Medicherla, Prashanth Suravajhala, Sandeep Kumar Mathur
Software Mentions: 6
Published: over 7 years ago

10.1038/s41598-019-46932-z

DMSO cryopreservation is the method of choice to preserve cells for droplet-based single-cell RNA sequencing
Cited by: 73
Author(s): Christian T. Wohnhaas, Germán Leparc, Francesc Fernández-Albert, David Kind, Florian Gantner, Coralie Viollet, Tobias Hildebrandt, Patrick Baum
Software Mentions: 6
Published: almost 7 years ago

10.1038/ismej.2017.165

Recurrent patterns of microdiversity in a temperate coastal marine environment
Cited by: 110
Author(s): Meghan Chafee, Antonio Fernández-Guerra, Pier Luigi Buttigieg, Gunnar Gerdts, A. Murat Eren, Hanno Teeling, Rudolf Amann
Software Mentions: 6
Published: over 8 years ago

10.1371/journal.pone.0233372

Muscle transcriptome analysis identifies genes involved in ciliogenesis and the molecular cascade associated with intramuscular fat content in Large White heavy pigs
Cited by: 20
Author(s): Martina Zappaterra, Silvia Gioiosa, Giovanni Chillemi, Paolo Zambonelli, Roberta Davoli
Software Mentions: 6
Published: about 6 years ago

10.1186/s12864-019-5946-0

Prediction of regulatory long intergenic non-coding RNAs acting in trans through base-pairing interactions
Cited by: 19
Author(s): Jules Deforges, Rodrigo S. Reis, Philippe Jacquet, Dominique Jacques Vuarambon, Yves Poirier
Software Mentions: 6
Published: almost 7 years ago

10.1371/journal.pone.0174910

Evaluation of a gaze-controlled vision enhancement system for reading in visually impaired people
Cited by: 16
Author(s): Carlos Aguilar, Éric Castet
Software Mentions: 6
Published: over 9 years ago

10.3389/fonc.2021.667477

Preoperative Predictors of Lymph Node Metastasis in Colon Cancer
Cited by: 3
Author(s): Yali Xu, Yi Chen, Chenyan Long, Haining Zhong, Fangfang Liang, Lingling Huang, Chuanyi Wei, Shaolong Lu, Weizhong Tang
Software Mentions: 6
Published: about 5 years ago

10.7150/jca.55570

Upregulating <i>KTN1</i> promotes Hepatocellular Carcinoma progression
Cited by: 1
Author(s): Jian Pan, Naixia Chao, Yao‐Yao Zhang, Tianyi Huang, Chengxiao Chen, Qiuhong Qin, Jinhong Guo, Rongshi Huang, Guopei Luo
Software Mentions: 6
Published: over 5 years ago

10.1371/journal.pone.0219507

Discovery of potential urine-accessible metabolite biomarkers associated with muscle disease and corticosteroid response in the mdx mouse model for Duchenne
Cited by: 5
Author(s): Mathula Thangarajh, Aiping Zhang, Kirandeep Gill, Habtom W. Ressom, Zhenzhi Li, Rency S. Varghese, Eric P. Hoffman, Kanneboyina Nagaraju, Yetrib Hathout, Simina M. Boca
Software Mentions: 6
Published: almost 7 years ago

10.3389/fimmu.2021.720841

Unsupervised Clustering Reveals Distinct Subtypes of Biliary Atresia Based on Immune Cell Types and Gene Expression
Cited by: 9
Author(s): Xiaoyan Pang, Jing Cao, Shuru Chen, Zhiliang Gao, Guangjian Liu, Yutian Chong, Zhuang‐Gui Chen, Jiao Gong, Xinhua Li
Software Mentions: 6
Published: almost 5 years ago

10.1038/s41598-020-68879-2

Adaptation of gene loci to heterochromatin in the course of Drosophila evolution is associated with insulator proteins
Cited by: 2
Author(s): S. Yu. Funikov, Alexander P. Rezvykh, Д. А. Куликова, E. S. Zelentsova, Lyudmila A. Protsenko, Lyubov N. Chuvakova, Venera Tyukmaeva, Irina R. Arkhipova, Michael B. Evgen’ev
Software Mentions: 6
Published: almost 6 years ago

10.1186/s12893-020-00726-7

A novel nomogram to predict the risk of anastomotic leakage in patients after oesophagectomy
Cited by: 10
Author(s): Chengjie Huang, Haijun Yao, Qi Huang, Huijie Lu, Mengdan Xu
Software Mentions: 6
Published: over 6 years ago

10.15252/embj.2019101695

Phospho‐RNA‐seq: a modified small RNA‐seq method that reveals circulating mRNA and lncRNA fragments as potential biomarkers in human plasma
Cited by: 61
Author(s): María D. Giraldez, Ryan M Spengler, Alton Etheridge, Annika Jane Goicochea, Missy Tuck, Sung Won Choi, David J. Galas, Muneesh Tewari
Software Mentions: 6
Published: about 7 years ago

10.1371/journal.pone.0003415

Gene Expression Profiling of Two Distinct Neuronal Populations in the Rodent Spinal Cord
Cited by: 10
Author(s): Jesper Ryge, Ann-Charlotte Westerdahl, Preben Alstrøm, Ole Kiehn
Software Mentions: 6
Published: over 17 years ago

10.1038/s41598-018-23913-2

Analysis of HIV-1 envelope evolution suggests antibody-mediated selection of common epitopes among Chinese former plasma donors from a narrow-source outbreak
Cited by: 3
Author(s): Sophie Andrews, Yonghong Zhang, Tao Dong, Sarah Rowland‐Jones, Sunetra Gupta, Joakim Esbjörnsson
Software Mentions: 6
Published: about 8 years ago

10.21203/rs.3.rs-509143/v1

Impact of BNT162b First Vaccination on the Immune Transcriptome of Elderly Patients Infected with the B.1.351 SARS-CoV-2 Variant
Cited by: 3
Author(s): Ludwig Knabl, Hye Kyung Lee, Manuel Wieser, Anna Mur, August Zabernigg, Simon Rauch, Matthias Böck, Jana Schumacher, Norbert Kaiser, Priscilla A. Furth, Lothar Hennighausen
Software Mentions: 6
Published: about 5 years ago

10.1186/s40168-017-0262-x

A powerful microbiome-based association test and a microbial taxa discovery framework for comprehensive association mapping
Cited by: 58
Author(s): Hyunwook Koh, Martin J. Blaser, Hui-Lin Li
Software Mentions: 6
Published: about 9 years ago

10.1038/s41598-018-32229-0

Soil resources and element stocks in drylands to face global issues
Cited by: 98
Author(s): César Plaza, Claudio Zaccone, Kasia Sawicka, Ana Méndez, Ana M. Tarquis, Gabriel Gascó, G.B.M. Heuvelink, Edward A. G. Schuur, Fernando T. Maestre
Software Mentions: 6
Published: almost 8 years ago

10.3389/fcell.2021.717601

Tumor Immune Microenvironment Landscape in Glioma Identifies a Prognostic and Immunotherapeutic Signature
Cited by: 5
Author(s): Chunyu Zhang, Lirui Guo, Zhongzhou Su, Na Luo, Yinqiu Tan, Pengfei Xu, Liguo Ye, Shiao Tong, Haitao Liu, Xiaobin Li, Qianxue Chen, Daofeng Tian
Software Mentions: 6
Published: almost 5 years ago

10.1371/journal.pgen.1005465

YAP1 Exerts Its Transcriptional Control via TEAD-Mediated Activation of Enhancers
Cited by: 272
Author(s): Christoph Stein, Anaïs F. Bardet, Guglielmo Roma, Sebastian Bergling, Ieuan Clay, Alexandra Ruchti, Claudia Agarinis, Tobias Schmelzle, Tewis Bouwmeester, Dirk Schübeler, Andreas Bauer
Software Mentions: 6
Published: almost 11 years ago

10.26508/lsa.202000731

Exploiting somatic piRNAs in <i>Bemisia tabac</i>i enables novel gene silencing through RNA feeding
Cited by: 18
Author(s): Mosharrof Mondal, Judith K. Brown, Alex S. Flynt
Software Mentions: 6
Published: almost 6 years ago

10.1038/s41598-019-45388-5

Identifying niche and fitness dissimilarities in invaded marine macroalgal canopies within the context of contemporary coexistence theory
Cited by: 9
Author(s): Graham Epstein, Stephen J. Hawkins, Dan A. Smale
Software Mentions: 6
Published: about 7 years ago

10.3389/fpsyt.2021.659527

A Retrospective Comparative Study in Patients With Cocaine Use Disorder Comorbid With Attention Deficit Hyperactivity Disorder Undergoing an rTMS Protocol Treatment
Cited by: 1
Author(s): Stefano Cardullo, Luis Javier Gómez Pérez, Diego Cuppone, Michela Sarlo, Nicola Cellini, Alberto Terraneo, Luigi Gallimberti, Graziella Madeo
Software Mentions: 6
Published: over 5 years ago

10.1186/s40104-021-00580-4

Convergence of the turkey gut microbiota following cohabitation under commercial settings
Cited by: 1
Author(s): Elizabeth A. Miller, Brittanie Winfield, Bonnie Weber, Cristian Flores-Figueroa, Jeannette Muñoz-Aguayo, Jared Huisinga, Timothy J. Johnson
Software Mentions: 6
Published: about 5 years ago

10.3389/fonc.2021.639085

Risk Models for Advanced Melanoma Patients Under Anti-PD-1 Monotherapy—Ad hoc Analyses of Pooled Data From Two Clinical Trials
Cited by: 5
Author(s): Xue Bai, Jie Dai, Caili Li, Chuanliang Cui, Lili Mao, Xiaoting Wei, Xinan Sheng, Zhihong Chen, Xieqiao Yan, Bixia Tang, Bin Lian, Xuan Wang, Li Zhou, Siming Li, Yan Kong, Zhonghui Qi, Huayan Xu, Rong Duan, Jun Guo, Lu Si
Software Mentions: 6
Published: about 5 years ago

10.1371/journal.pcbi.1004274

Genome Modeling System: A Knowledge Management Platform for Genomics
Cited by: 77
Author(s): Malachi Griffith, Scott M. Smith, Avinash Ramu, Matthew B. Callaway, Anthony M. Brummett, Michael J. Kiwala, Adam Coffman, Allison Regier, Benjamin J. Oberkfell, Gabriel E. Sanderson, Thomas P. Mooney, Nathaniel G. Nutter, Edward A. Belter, Feiyu Du, R.L. Long, Travis E. Abbott, Ian T. Ferguson, David Morton, Mark M. Burnett, James V. Weible, Joshua B. Peck, Adam F. Dukes, Joshua F. McMichael, Justin T. Lolofie, Brian R. Derickson, Jasreet Hundal, Zachary L. Skidmore, Benjamin J. Ainscough, Nathan D. Dees, William Schierding, Cyriac Kandoth, Kyung H. Kim, Charles Lu, Christopher Harris, Nicole Maher, Christopher A. Maher, Vincent Magrini, Benjamin Abbott, Ken Chen, Eric M. Clark, Indraniel Das, Xian Fan, Amy E. Hawkins, Todd G. Hepler, Todd Wylie, Shawn Leonard, W.E. Schroeder, Xiaoqi Shi, Lynn K. Carmichael, Matthew R. Weil, Richard W. Wohlstadter, Gary Stiehr, Michael D. McLellan, Craig Pohl, Christopher A. Miller, Daniel C. Koboldt, Jason Walker, James M. Eldred, David E. Larson, David J. Dooling, Ding Li, Elaine R. Mardis, Richard K. Wilson
Software Mentions: 6
Published: almost 11 years ago

10.1093/icb/icaa138

Epigenetics of Animal Personality: DNA Methylation Cannot Explain the Heritability of Exploratory Behavior in a Songbird
Cited by: 11
Author(s): Kees van Oers, Bernice Sepers, William Sies, Fleur Gawehns, Koen Verhoeven, Veronika N. Laine
Software Mentions: 6
Published: over 5 years ago

10.1111/mec.15047

Caste‐ and pesticide‐specific effects of neonicotinoid pesticide exposure on gene expression in bumblebees
Cited by: 53
Author(s): Thomas J. Colgan, Isabel Fletcher, Andres N. Arce, Richard J. Gill, Ana Ramos Rodrigues, Eckart Stolle, Lars Chittka, Yannick Wurm
Software Mentions: 6
Published: over 7 years ago

10.3389/fimmu.2020.00435

Egyptian Rousette IFN-ω Subtypes Elicit Distinct Antiviral Effects and Transcriptional Responses in Conspecific Cells
Cited by: 10
Author(s): Stephanie S Pavlovich, Tamarand L. Darling, Adam J. Hume, Robert A. Davey, Feng Feng, Elke Mühlberger, Thomas B. Kepler
Software Mentions: 6
Published: over 6 years ago

10.3390/v6031112

Changes in Diversification Patterns and Signatures of Selection during the Evolution of Murinae-Associated Hantaviruses
Cited by: 16
Author(s): Guillaume Castel, Maria Razzauti, Emmanuelle Jousselin, Gaël J. Kergoat, Jean‐François Cosson
Software Mentions: 6
Published: over 12 years ago

10.1371/journal.pgen.1008250

Molecular dissection of the oncogenic role of ETS1 in the mesenchymal subtypes of head and neck squamous cell carcinoma
Cited by: 22
Author(s): Christian Gluck, Alexandra Ruth Glathar, Maria Tsompana, Norma J. Nowak, Lee Ann Garrett‐Sinha, Michael Buck, Satrajit Sinha
Software Mentions: 6
Published: almost 7 years ago

10.1007/s00018-020-03485-z

Anti-adipogenic signals at the onset of obesity-related inflammation in white adipose tissue
Cited by: 17
Author(s): Tiziana Caputo, Van Du T. Tran, Nasim Bararpour, Carine Winkler, Gabriela Aguileta, Bao Khanh Trang, Greta Maria Paola Giordano Attianese, Anne Wilson, Aurélien Thomas, Marco Pagni, Nicolas Guex, Béatrice Desvergne, Federica Gilardi
Software Mentions: 6
Published: over 6 years ago

10.1371/journal.pgen.1009338

Fruitless decommissions regulatory elements to implement cell-type-specific neuronal masculinization
Cited by: 15
Author(s): Margarita V. Brovkina, Rachel Duffié, Abbigayl E. C. Burtis, E. Josephine Clowney
Software Mentions: 6
Published: over 5 years ago

10.1371/journal.pone.0205406

Examining the contribution of smoking and HPV towards the etiology of oral cavity squamous cell carcinoma using high-throughput sequencing: A prospective observational study
Cited by: 10
Author(s): Andrew P Zammit, Rohit Anthony Sinha, Caroline Cooper, Christopher Perry, Ian H. Frazer, Zewen Kelvin Tuong
Software Mentions: 6
Published: over 7 years ago

10.1371/journal.pcbi.1002521

The Layer-Oriented Approach to Declarative Languages for Biological Modeling
Cited by: 10
Author(s): Ivan Raikov, Erik De Schutter
Software Mentions: 6
Published: about 14 years ago

10.1371/journal.pgen.1009474

Dynamic neurogenomic responses to social interactions and dominance outcomes in female paper wasps
Cited by: 6
Author(s): Floria M. K. Uy, Christopher M. Jernigan, Natalie C. Zaba, Eshan Mehrotra, Sara Miller, Michael J. Sheehan
Software Mentions: 6
Published: almost 5 years ago

10.1038/s41598-019-51452-x

NADH dehydrogenases Nuo and Nqr1 contribute to extracellular electron transfer by Shewanella oneidensis MR-1 in bioelectrochemical systems
Cited by: 15
Author(s): Cody S. Madsen, Michaela A. TerAvest
Software Mentions: 6
Published: over 6 years ago

10.1371/journal.pone.0240538

Populations of arable weed species show intra-specific variability in germination base temperature but not in early growth rate
Cited by: 5
Author(s): Jana Bürger, Andrey V. Malyshev, Nathalie Colbach
Software Mentions: 6
Published: over 5 years ago

10.1016/j.stem.2020.11.005

Capture of Mouse and Human Stem Cells with Features of Formative Pluripotency
Cited by: 125
Author(s): Masaki Kinoshita, M. Barber, William Mansfield, Yingzhi Cui, Daniel Spindlow, Giuliano Giuseppe Stirparo, Sabine Dietmann, Jennifer Nichols, Austin Smith
Software Mentions: 6
Published: over 5 years ago

10.3389/fgene.2020.606222

Agricultural Landscape Heterogeneity Matter: Responses of Neutral Genetic Diversity and Adaptive Traits in a Neotropical Savanna Tree
Cited by: 5
Author(s): Tatiana Souza do Amaral, Juliana Silveira dos Santos, Fernanda Fraga Rosa, Marcelo Bruno Pessôa, Lázaro José Chaves, Milton Cézar Ribeiro, Rosane Garcia Collevatti
Software Mentions: 6
Published: over 5 years ago

10.1371/journal.pone.0121349

Diagnostic Value of Run Chart Analysis: Using Likelihood Ratios to Compare Run Chart Rules on Simulated Data Series
Cited by: 27
Author(s): Jacob Anhøj
Software Mentions: 6
Published: over 11 years ago

10.1371/journal.pone.0185166

Sinking towards destiny: High throughput measurement of phytoplankton sinking rates through time-resolved fluorescence plate spectroscopy
Cited by: 10
Author(s): Catherine Bannon, Douglas A. Campbell
Software Mentions: 6
Published: almost 9 years ago

10.1038/srep34220

Widespread DNA hypomethylation and differential gene expression in Turner syndrome
Cited by: 99
Author(s): Christian Trolle, Morten Muhlig Nielsen, Anne Skakkebæk, Philippe Lamy, Søren Vang, Jakob Hedegaard, Iver Nordentoft, Torben F. Ørntoft, Jakob Skou Pedersen, Claus Højbjerg Gravholt
Software Mentions: 6
Published: almost 10 years ago

10.1099/vir.0.053686-0

Proposals for the classification of human rhinovirus species A, B and C into genotypically assigned types
Cited by: 166
Author(s): Chloe McIntyre, Nick J. Knowles, Peter Simmonds
Software Mentions: 6
Published: almost 13 years ago

10.1186/s12874-020-00977-1

Generation and evaluation of synthetic patient data
Cited by: 120
Author(s): Alim P. C. Gonçalves, Priyadip Ray, Braden Soper, Jennifer Stevens, Linda Coyle, Ana Paula Sales
Software Mentions: 6
Published: about 6 years ago

10.1371/journal.pone.0251385

Improving the diagnostic recognition of thoracic endometriosis: Spotlight on a new histo-morphological indicator
Cited by: 1
Author(s): Okechukwu Charles Okafor, N Ezemba, Nnaemeka Thaddeus Onyishi, Kevin Nwabueze Ezike
Software Mentions: 6
Published: about 5 years ago

10.1242/dmm.047225

Hearing impairment due to <i>Mir183/96/182</i> mutations suggests both loss-of-function and gain-of-function effects
Cited by: 10
Author(s): Morag A. Lewis, Francesca Di Domenico, Neil J. Ingham, Haydn M. Prosser, Karen P. Steel
Software Mentions: 6
Published: over 5 years ago

10.1186/s12859-020-03648-6

A computational framework for modeling and studying pertussis epidemiology and vaccination
Cited by: 4
Author(s): Paolo Castagno, Simone Pernice, Gianni Ghetti, Massimiliano Povero, Lorenzo Pradelli, Daniela Paolotti, Gianfranco Balbo, Matteo Sereno, Marco Beccuti
Software Mentions: 6
Published: almost 6 years ago

10.1371/journal.pone.0238669

Protected areas network is not adequate to protect a critically endangered East Africa Chelonian: Modelling distribution of pancake tortoise, Malacochersus tornieri under current and future climates
Cited by: 9
Author(s): Abraham Eustace, Luíz Fernando Esser, Rudolf Mremi, Patrick K. Malonza, Reginald T. Mwaya
Software Mentions: 6
Published: over 5 years ago

10.1186/s12942-018-0140-1

Stress experiences in neighborhood and social environments (SENSE): a pilot study to integrate the quantified self with citizen science to improve the built environment and health
Cited by: 49
Author(s): Benjamin W. Chrisinger, Abby C. King
Software Mentions: 6
Published: about 8 years ago

10.3389/fonc.2021.732447

Comprehensive Molecular Analyses of a Six-Gene Signature for Predicting Late Recurrence of Hepatocellular Carcinoma
Cited by: 7
Author(s): Yuyuan Zhang, Xinwei Han, Xin Li, Long Liu, Libo Wang, Xinwei Han, Zhen Li
Software Mentions: 6
Published: almost 5 years ago

10.1371/journal.pone.0197074

Multi-site evaluation of the LN34 pan-lyssavirus real-time RT-PCR assay for post-mortem rabies diagnostics
Cited by: 43
Author(s): Crystal M. Gigante, Lisa Dettinger, James Powell, Melanie Seiders, Rene Edgar Condori, Richard Griesser, Kenneth Okogi, Maria P. Carlos, Kendra N. Pesko, Mike Breckenridge, Edson Michael M. Simon, Maria Yna Joyce Chu, April Davis, Scott Brunt, Lillian A. Orciari, Pamela A. Yager, William C. Carson, Claire Hartloge, Jeremiah T. Saliki, Susan Sánchez, Mojgan Deldari, Kristina Hsieh, Ashutosh Wadhwa, Kimberly Wilkins, Veronica Yung Peredo, Patricia Rabideau, Nina Gruhn, Rolain Cadet, Shrikrishna Isloor, Sujith S Nath, Tomy Joseph, Jinxin Gao, Ryan M. Wallace, Mary G. Reynolds, Victoria A. Olson, Li Yu
Software Mentions: 6
Published: about 8 years ago

10.1093/gbe/evaa143

The Genome of the Softshell Clam Mya arenaria and the Evolution of Apoptosis
Cited by: 5
Author(s): David C. Plachetzki, M. Sabrina Pankey, Matthew D. MacManes, Michael P. Lesser, Charles W. Walker
Software Mentions: 6
Published: almost 6 years ago

10.1186/s12862-017-0957-4

Patterns of divergence in fish species separated by the Isthmus of Panama
Cited by: 27
Author(s): Christine E. Thacker
Software Mentions: 6
Published: about 9 years ago

10.1002/ece3.4501

Giant coral reef fishes display markedly different susceptibility to night spearfishing
Cited by: 5
Author(s): Alan R. Pearse, Richard Hamilton, J. Howard Choat, John Pita, Glenn R. Almany, Nate Peterson, Grant Hamilton, Erin E. Peterson
Software Mentions: 6
Published: almost 8 years ago

10.1371/journal.pntd.0009567

Inequalities of visceral leishmaniasis case-fatality in Brazil: A multilevel modeling considering space, time, individual and contextual factors
Cited by: 18
Author(s): Gláucia Cota, Astrid Erber, Eva Schernhammer, Taynãna César Simões
Software Mentions: 6
Published: about 5 years ago

10.1371/journal.pone.0204511

Flexible foraging strategies in Pipistrellus pygmaeus in response to abundant but ephemeral prey
Cited by: 4
Author(s): Lucinda Kirkpatrick, Jennifer Graham, Sean McGregor, Lynn Munro, Matheus Maximilian Ratz Scoarize, Kirsty Park
Software Mentions: 6
Published: almost 8 years ago

10.1371/journal.pone.0135585

Behavioral Correlates of Primates Conservation Status: Intrinsic Vulnerability to Anthropogenic Threats
Cited by: 7
Author(s): Amélie Lootvoet, Justine Philippon, Carmen Bessa‐Gomes
Software Mentions: 6
Published: almost 11 years ago

10.3389/fonc.2021.617289

Derivation and Validation of a Prognostic Model for Cancer Dependency Genes Based on CRISPR-Cas9 in Gastric Adenocarcinoma
Cited by: 16
Author(s): Wenjie Zhou, Junqing Li, Xiufen Lu, Fangjie Liu, Tailai An, Xing Xiao, Zi Chong Kuo, Wenhui Wu, Yulong He
Software Mentions: 6
Published: over 5 years ago

10.1038/sdata.2017.185

An RNA-Seq atlas of gene expression in mouse and rat normal tissues
Cited by: 95
Author(s): Julia F. Söllner, Germán Leparc, Tobias Hildebrandt, H. Klein, Leo Thomas, Elia Stupka, Eric J. Simon
Software Mentions: 6
Published: over 8 years ago

10.7554/eLife.09800

Cell type-specific transcriptomics of hypothalamic energy-sensing neuron responses to weight-loss
Cited by: 177
Author(s): Fredrick E. Henry, Ken Sugino, Adam Tozer, Tiago Branco, Scott M. Sternson
Software Mentions: 6
Published: almost 11 years ago

10.1186/s12879-018-3285-4

Using Baidu index to nowcast hand-foot-mouth disease in China: a meta learning approach
Cited by: 21
Author(s): Yang Zhao, Qinneng Xu, Yupeng Chen, Kwok Leung Tsui
Software Mentions: 6
Published: almost 8 years ago

10.7554/eLife.54655

Hfq CLASH uncovers sRNA-target interaction networks linked to nutrient availability adaptation
Cited by: 58
Author(s): Ira Alexandra Iosub, Rob W. van Nues, Stuart McKellar, Karen Jule Nieken, Marta Marchioretto, Brandon Sy, Jai J. Tree, Gabriella Viero, Sander Granneman
Software Mentions: 6
Published: about 6 years ago

10.1186/s12911-019-0991-9

Identifying undetected dementia in UK primary care patients: a retrospective case-control study comparing machine-learning and standard epidemiological approaches
Cited by: 31
Author(s): Elizabeth Ford, Philip Rooney, Seb Oliver, Richard Hoile, P. D. Hurley, Sube Banerjee, Harm van Marwijk, Jackie A Cassell
Software Mentions: 6
Published: over 6 years ago

10.1371/journal.pntd.0006698

Population genomics of Culiseta melanura, the principal vector of Eastern equine encephalitis virus in the United States
Cited by: 5
Author(s): John Soghigian, Theodore G. Andreadis, Goudarz Molaei
Software Mentions: 6
Published: almost 8 years ago

10.1186/s13148-018-0582-0

Differential open chromatin profile and transcriptomic signature define depot-specific human subcutaneous preadipocytes: primary outcomes
Cited by: 20
Author(s): Adeline Divoux, Katalin Sandor, Dóra Bojcsuk, Amlan Talukder, Xiaoman Li, Bálint László Bálint, Timothy F. Osborne, Steven R. Smith
Software Mentions: 6
Published: over 7 years ago

10.3390/microorganisms8060883

Linking Shifts in Bacterial Community Composition and Function with Changes in the Dissolved Organic Matter Pool in Ice-Covered Baiyangdian Lake, Northern China
Cited by: 13
Author(s): Shilei Zhou, Yifei Sun, Ming-Hui Yu, Zhenpeng Shi, Hang Zhang, Rui-Zhe Peng, Zaixing Li, Jiansheng Cui, Xiang Liu
Software Mentions: 6
Published: about 6 years ago

10.1371/journal.pone.0047508

Early Social Networks Predict Survival in Wild Bottlenose Dolphins
Cited by: 177
Author(s): Margaret A. Stanton, Janet Mann
Software Mentions: 6
Published: over 13 years ago

10.1186/s12864-016-3199-8

Identification of novel targets of diabetic nephropathy and PEDF peptide treatment using RNA-seq
Cited by: 29
Author(s): Ana Rubín, Anna C. Salzberg, Yuka Imamura, Anzor Grivitishvilli, Joyce Tombran-Tink
Software Mentions: 6
Published: over 9 years ago

10.1371/journal.pgen.1009801

Tramtrack acts during late pupal development to direct ant caste identity
Cited by: 6
Author(s): Karl M. Glastad, Linyang Ju, Shelley L. Berger
Software Mentions: 6
Published: almost 5 years ago

10.3389/fphar.2021.728368

A Novel Integrated Metabolism-Immunity Gene Expression Model Predicts the Prognosis of Lung Adenocarcinoma Patients
Cited by: 3
Author(s): Songming Chen, Yumei Duan, Yanhao Wu, Desong Yang, Jian An
Software Mentions: 6
Published: almost 5 years ago

10.1038/s41598-021-89938-2

Improved methods for RNAseq-based alternative splicing analysis
Cited by: 20
Author(s): Rebecca F. Halperin, Apurva M. Hegde, Jessica D. Lang, Elizabeth A. Raupach, Christophe Legendre, Winnie S. Liang, Patricia LoRusso, Aleksandar Sekulić, Jeffrey A. Sosman, Jeffrey M. Trent, Sampathkumar Rangasamy, Patrick Pirrotte, Nicholas J. Schork
Software Mentions: 6
Published: about 5 years ago

10.3390/microorganisms9051060

Microbial Composition of SCOBY Starter Cultures Used by Commercial Kombucha Brewers in North America
Cited by: 42
Author(s): Keisha Harrison, Chris Curtin
Software Mentions: 6
Published: about 5 years ago

10.1186/s12859-016-1298-9

Evaluating tools for transcription factor binding site prediction
Cited by: 75
Author(s): Narayan Jayaram, Daniel Usvyat, Andrew C.R. Martin
Software Mentions: 6
Published: over 9 years ago

10.7717/peerj.6674

Epizootic ulcerative syndrome causes cutaneous dysbacteriosis in hybrid snakehead (<i>Channa maculata♀ × Channa argus♂</i>)
Cited by: 6
Author(s): Zhifei Li, Guangjun Wang, Kai Zhang, Wangbao Gong, Ermeng Yu, Jingjing Tian, Jun Xie, Deguang Yu
Software Mentions: 6
Published: over 7 years ago