Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1128/mSystems.00329-20

https://doi.org/10.1128/mSystems.00329-20

Selective Translation of Low Abundance and Upregulated Transcripts in Halobacterium salinarum

Cited by: 8
Author(s): Adrián López García de Lomana, Ulrike Kusebauch, Arjun V. Raman, Min Pan, Serdar Turkarslan, Alan Péricles Rodrigues Lorenzetti, Robert L. Moritz, Nitin S. Baliga
Published: about 4 years ago

Software Mentions 6

bioconductor: DESeq2

Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583

bioconductor: MAST

Model-based Analysis of Single Cell Transcriptomics
Papers that mentioned: 668

cran: STAR

Spike Train Analysis with R
Papers that mentioned: 5,759

pypi: HTSeq

A framework to process and analyze data from high-throughput sequencing (HTS) assays
Papers that mentioned: 3,071

pypi: kallisto

The Kallisto software enables the efficient calculation of atomic features that can be used within a quantitative structure-activity relationship (QSAR) approach. Furthermore, several modelling helpers are implemented.
Papers that mentioned: 307

pypi: MAST

MAterials Simulation Toolkit
Papers that mentioned: 668