10.1186/s12859-020-03707-y

A sparse Bayesian factor model for the construction of gene co-expression networks from single-cell RNA sequencing count data
Cited by: 11
Author(s): Michael Sekula, Jeremy Gaskins, Susmita Datta
Software Mentions: 6
Published: almost 6 years ago

10.1371/journal.pone.0189338

Long disordered regions of the C-terminal domain of Abelson tyrosine kinase have specific and additive functions in regulation and axon localization
Cited by: 3
Author(s): Han S J Cheong, Mark F. A. VanBerkum
Software Mentions: 6
Published: over 8 years ago

10.1093/bioinformatics/bts363

Integrating literature-constrained and data-driven inference of signalling networks
Cited by: 36
Author(s): Federica Eduati, Javier De Las Rivas, Barbara Di Camillo, Gianna Toffolo, Julio Sáez-Rodríguez
Software Mentions: 6
Published: about 14 years ago

10.7717/peerj.10563

Improving insect conservation across heterogeneous landscapes using species–habitat networks
Cited by: 5
Author(s): Andree Cappellari, Lorenzo Marini
Software Mentions: 6
Published: over 5 years ago

10.1093/gigascience/giz107

A field guide for the compositional analysis of any-omics data
Cited by: 162
Author(s): Thomas P. Quinn, Ionas Erb, Gregory B. Gloor, Cédric Notredame, Mark F. Richardson, Tamsyn M. Crowley
Software Mentions: 6
Published: almost 7 years ago

10.1371/journal.pbio.2005747

Vitellogenin-like A–associated shifts in social cue responsiveness regulate behavioral task specialization in an ant
Cited by: 57
Author(s): Philip Kohlmeier, Barbara Feldmeyer, Susanne Foitzik
Software Mentions: 6
Published: about 8 years ago

10.1371/journal.pbio.3001114

The plant metabolome guides fitness-relevant foraging decisions of a specialist herbivore
Cited by: 13
Author(s): Ricardo A. R. Machado, Vanitha Theepan, Christelle Robert, Tobias Züst, Lingfei Hu, Qi Su, Bernardus C. J. Schimmel, Matthias Erb
Software Mentions: 6
Published: over 5 years ago

10.3390/microorganisms9020278

The Effects of Genetic Relatedness on the Preterm Infant Gut Microbiota
Cited by: 6
Author(s): Shen Jean Lim, Miriam Aguilar-López, Christine Wetzel, Samia Valéria Ozório Dutra, Vanessa T. Bray, Maureen Groër, Sharon M. Donovan, Thao Ho
Software Mentions: 6
Published: over 5 years ago

10.1186/s12859-018-2330-z

outbreaker2: a modular platform for outbreak reconstruction
Cited by: 50
Author(s): Finlay Campbell, Xavier Didelot, Richard G. FitzJohn, Neil Ferguson, Anne Cori, Thibaut Jombart
Software Mentions: 6
Published: almost 8 years ago

10.1007/s00248-019-01434-3

Feeding Honeybee Colonies with Honeybee-Specific Lactic Acid Bacteria (Hbs-LAB) Does Not Affect Colony-Level Hbs-LAB Composition or Paenibacillus larvae Spore Levels, Although American Foulbrood Affected Colonies Harbor a More Diverse Hbs-LAB Community
Cited by: 14
Author(s): Sepideh Lamei, Jörg G. Stephan, Bo Nilson, Sander Sieuwerts, Kristian Riesbeck, Joachim Rodrigues De Miranda, Eva Forsgren
Software Mentions: 6
Published: almost 7 years ago

10.1161/CIRCULATIONAHA.119.039596

Widespread Translational Control of Fibrosis in the Human Heart by RNA-Binding Proteins
Cited by: 74
Author(s): Sonia Chothani, Sebastian Schäfer, Eleonora Adami, V. Sivakumar, Anissa A. Widjaja, Sarah R. Langley, Jessie Tan, Mao Wang, Nicholas M Quaife, Chee Jian Pua, G. D’Agostino, Shamini Guna Shekeran, Benjamin L. George, Si Ching Lim, Elaine Yiqun Cao, Sebastiaan van Heesch, Franziska Witte, Leanne E. Felkin, Eleni G. Christodoulou, Jinqiao Dong, Susanne Blachut, Giannino Patone, Paul J.R. Barton, Norbert Hübner, Stuart A. Cook, Owen J. L. Rackham
Software Mentions: 6
Published: almost 7 years ago

10.3390/metabo11060356

Plasma Metabolites, Productive Performance and Rumen Volatile Fatty Acid Profiles of Northern Australian Bos indicus Steers Supplemented with Desmanthus and Lucerne
Cited by: 4
Author(s): Bénédicte Suybeng, E. Charmley, Christopher Gardiner, Bunmi S. Malau‐Aduli, A.E.O. Malau‐Aduli
Software Mentions: 6
Published: about 5 years ago

10.3390/md19070357

Microalgae as Sustainable Bio-Factories of Healthy Lipids: Evaluating Fatty Acid Content and Antioxidant Activity
Cited by: 47
Author(s): Tiago Conde, Bruno Miguel Neves, Daniela Couto, Tânia Melo, Margarida Costa, Joana Silva, Pedro Domingues, M. Rosário M. Domingues
Software Mentions: 6
Published: about 5 years ago

10.3390/ani10010113

Exploring the Use of a Qualitative Behavioural Assessment Approach to Assess Emotional State of Calves in Rodeos
Cited by: 6
Author(s): Sally Rizzuto, Di Evans, Bethany Wilson, Paul D. McGreevy
Software Mentions: 6
Published: over 6 years ago

10.1038/s41598-018-31866-9

Child Weight Gain Trajectories Linked To Oral Microbiota Composition
Cited by: 38
Author(s): Sarah Jane Craig, Daniel Blankenberg, Alice Parodi, Ian M. Paul, Leann L. Birch, Jennifer S. Savage, Michele Marini, Jennifer L. Stokes, Anton Nekrutenko, Matthew Reimherr, Francesca Chiaromonte, Kateryna D. Makova
Software Mentions: 6
Published: almost 8 years ago

10.1155/2021/9921466

A Novel Immune-Related lncRNA-Based Model for Survival Prediction in Clear Cell Renal Cell Carcinoma
Cited by: 9
Author(s): Zedan Zhang, Yanlin Tang, Yanjun Liu, Hongkai Zhuang, Enyu Lin, Lu Xie, Xiaoqiang Feng, Kaiwen Tian, Jiayi Zeng, Jiumin Liu, Yuming Yu
Software Mentions: 6
Published: about 5 years ago

10.1371/journal.pone.0099926

Insights from Computational Modeling in Inflammation and Acute Rejection in Limb Transplantation
Cited by: 23
Author(s): Dolores Wolfram, Ravi Starzl, Hubert Hackl, Derek Barclay, Theresa Hautz, Bettina Zelger, Gerald Brandacher, W. P. Andrew Lee, Nadine Eberhart, Yoram Vodovotz, Johann Pratschke, Gerhard Pierer, Stefan Schneeberger
Software Mentions: 6
Published: about 12 years ago

10.1371/journal.ppat.1007634

The ETS transcription factor ELF1 regulates a broadly antiviral program distinct from the type I interferon response
Cited by: 49
Author(s): Leon Louis Seifert, Clara Si, Debjani Saha, Mohammad Sadic, Maren de Vries, Sarah Ballentine, Aaron Briley, Guojun Wang, Ana M. Valero-Jimenez, Adil Mohamed, Uwe Schaefer, Hong M. Moulton, Adolfo Garcı́a-Sastre, Shashank Tripathi, Brad R. Rosenberg, Meike Dittmann
Software Mentions: 6
Published: over 6 years ago

10.1186/s12967-020-02616-1

Immune landscape of periodontitis unveils alterations of infiltrating immunocytes and molecular networks-aggregating into an interactive web-tool for periodontitis related immune analysis and visualization
Cited by: 7
Author(s): Xiaoqi Zhang, Qingxuan Wang, Xinyu Yan, Yue Shan, Xing Lü, Minqi Li, Hu Long, Wenli Lai
Software Mentions: 6
Published: over 5 years ago

10.1371/journal.pmed.1003789

All-cause and cause-specific mortality during and following incarceration in Brazil: A retrospective cohort study
Cited by: 2
Author(s): Yiran E. Liu, Everton Ferreira Lemos, Crhistinne Cavalheiro Maymone Gonçalves, Roberto Dias de Oliveira, Andréa da Silva Santos, Agne Oliveira do Prado Morais, Mariana Garcia Croda, Maria de Lourdes Delgado Alves, Júlio Croda, Katharine S. Walter, Jason R Andrews
Software Mentions: 6
Published: almost 5 years ago

10.1038/s41598-020-70535-8

Bacterial microbiota diversity and composition in red and white wines correlate with plant-derived DNA contributions and botrytis infection
Cited by: 16
Author(s): Alena M. Bubeck, Lena C. Preiss, Anna Jung, Elisabeth Dörner, Daniel Podlesny, Marija Kulis, Cynthia Maddox, Cesar Arze, Christian Zörb, Nikolaus Merkt, W. Florian Fricke
Software Mentions: 6
Published: almost 6 years ago

10.1084/jem.20200829

The mRNA m6A reader YTHDF2 suppresses proinflammatory pathways and sustains hematopoietic stem cell function
Cited by: 80
Author(s): Christopher Mapperley, Louie Van De Lagemaat, Hannah Lawson, Andrea Tavosanis, J Paris, Joana Campos, David Wotherspoon, Jozef Durko, Annika Sarapuu, Joong-Seon Choe, Ivayla Ivanova, Daniela Krause, Alex von Kriegsheim, Christian Much, Marcos Morgan, Richard I. Gregory, Adam J. Mead, Dónal O’Carroll, Kamil R. Kranc
Software Mentions: 6
Published: over 5 years ago

10.1111/mec.13914

Genome biogeography reveals the intraspecific spread of adaptive mutations for a complex trait
Cited by: 44
Author(s): Jill K. Olofsson, Matheus E Bianconi, Guillaume Besnard, Luke T. Dunning, Marjorie R. Lundgren, Hélène Holota, Maria S. Vorontsova, Oriane Hidalgo, Ilia J. Leitch, Patrik Nosil, Colin P. Osborne, Pascal‐Antoine Christin
Software Mentions: 6
Published: over 9 years ago

10.1111/eva.12484

Severe consequences of habitat fragmentation on genetic diversity of an endangered Australian freshwater fish: A call for assisted gene flow
Cited by: 106
Author(s): Alexandra Pavlova, Luciano B. Beheregaray, Rhys A. Coleman, Dean M. Gilligan, Katherine A. Harrisson, Brett A. Ingram, Joanne Kearns, Annika M. Lamb, Mark Lintermans, Jarod Lyon, Thuy Thi Thu Nguyen, Minami Sasaki, Zeb Tonkin, Jian D. L. Yen, Paul Sunnucks
Software Mentions: 6
Published: about 9 years ago

10.1038/s41598-020-73145-6

Differential side-effects of Bacillus thuringiensis bioinsecticide on non-target Drosophila flies
Cited by: 15
Author(s): Aurélie Babin, Marie-Paule Nawrot-Esposito, Armel Gallet, Jean‐Luc Gatti, Marylène Poirié
Software Mentions: 6
Published: almost 6 years ago

10.1371/journal.pone.0187612

Association of high-risk sexual behaviour with diversity of the vaginal microbiota and abundance of Lactobacillus
Cited by: 39
Author(s): Jocelyn M. Wessels, Julie Lajoie, Danielle Vitali, Kenneth Omollo, Joshua Kimani, Julius Oyugi, Juliana Cheruiyot, Murungaru Kimani, Joseph Maina Mungai, Maureen Akolo, Jennifer C. Stearns, Michael G. Surette, Keith R. Fowke, Charu Kaushic
Software Mentions: 6
Published: over 8 years ago

10.3390/genes11101124

Comparative Transcriptomics and Co-Expression Networks Reveal Tissue- and Genotype-Specific Responses of qDTYs to Reproductive-Stage Drought Stress in Rice (Oryza sativa L.)
Cited by: 11
Author(s): Jeshurun Asher Tarun, Ramil Mauleon, Juan David Arbelaez, Sheryl Catausan, Shalabh Dixit, Arvind Kumar, Patrick J. Brown, Ajay Kohli, Tobias Kretzschmar
Software Mentions: 6
Published: almost 6 years ago

10.3390/molecules25061442

Discrimination of Gentiana and Its Related Species Using IR Spectroscopy Combined with Feature Selection and Stacked Generalization
Cited by: 26
Author(s): Tao Shen, Hong Yu, Yuanzhong Wang
Software Mentions: 6
Published: over 6 years ago

10.1038/s41598-021-94805-1

AnnoMiner is a new web-tool to integrate epigenetics, transcription factor occupancy and transcriptomics data to predict transcriptional regulators
Cited by: 4
Author(s): Arno Meiler, Fabio Marchianò, Margaux Haering, Manuela Weitkunat, Frank Schnorrer, Bianca Habermann
Software Mentions: 6
Published: almost 5 years ago

10.1007/s00439-020-02228-1

A CRISPR and high-content imaging assay compliant with ACMG/AMP guidelines for clinical variant interpretation in ciliopathies
Cited by: 5
Author(s): Liliya Nazlamova, N. Simon Thomas, Man‐Kim Cheung, Jelmer Legebeke, Jenny Lord, Reuben J. Pengelly, William Tapper, Gabrielle Wheway
Software Mentions: 6
Published: over 5 years ago

10.3390/biomedicines9091120

Neural Precursor Cells Expanded Inside the 3D Micro-Scaffold Nichoid Present Different Non-Coding RNAs Profiles and Transcript Isoforms Expression: Possible Epigenetic Modulation by 3D Growth
Cited by: 3
Author(s): Letizia Messa, Bianca Barzaghini, Federica Rey, Cecilia Pandini, Gian Vincenzo Zuccotti, Cristina Cereda, Stephana Carelli, Manuela Teresa Raimondi
Software Mentions: 6
Published: almost 5 years ago

10.1155/2020/8810143

An Efficient and Effective Model to Handle Missing Data in Classification
Cited by: 8
Author(s): Kamran Mehrabani-Zeinabad, Marziyeh Doostfatemeh, Seyyed Mohammad Taghi Ayatollahi
Software Mentions: 6
Published: over 5 years ago

10.1371/journal.pcbi.1007323

Using text-mined trait data to test for cooperate-and-radiate co-evolution between ants and plants
Cited by: 16
Author(s): Katrina M. Kaur, Pierre‐Jean G. Malé, E. J. Spence, Crisanto Gómez, Megan E. Frederickson
Software Mentions: 6
Published: over 6 years ago

10.3390/nu12061699

Dietary Diversity among Chinese Residents during the COVID-19 Outbreak and Its Associated Factors
Cited by: 115
Author(s): Aihua Zhao, Zhongyu Li, Yalei Ke, Shanshan Huo, Yang Ma, Yumei Zhang, Jian Zhang, Zhiguo Ren
Software Mentions: 6
Published: about 6 years ago

10.1002/ece3.7256

Mechanisms driving plant functional trait variation in a tropical forest
Cited by: 12
Author(s): Florian Hofhansl, Eduardo Chacón‐Madrigal, Åke Brännström, Ulf Dieckmann, Oskar Franklin
Software Mentions: 6
Published: over 5 years ago

10.1038/s41598-018-25588-1

Alterations in Cell Motility, Proliferation, and Metabolism in Novel Models of Acquired Temozolomide Resistant Glioblastoma
Cited by: 29
Author(s): Deanna Tiek, Janice D. Rone, Garrett T. Graham, Evan L. Pannkuk, Bassem R. Haddad, Rebecca B. Riggins
Software Mentions: 6
Published: about 8 years ago

10.3390/insects11100669

Validating Morphometrics with DNA Barcoding to Reliably Separate Three Cryptic Species of Bombus Cresson (Hymenoptera: Apidae)
Cited by: 7
Author(s): Joan Milam, Dennis E. Johnson, Jeremy C. Andersen, Aliza Fassler, Desirée L. Narango, Joseph S. Elkinton
Software Mentions: 6
Published: almost 6 years ago

10.1007/s00277-017-3003-0

Influence of body mass index on survival in indolent and mantle cell lymphomas: analysis of the StiL NHL1 trial
Cited by: 6
Author(s): Lukas Weiß, Thomas Melchardt, Alexander Egle, Georg Hopfinger, Hubert Hackl, Richard Greil, Juergen Barth, Mathias Rummel
Software Mentions: 6
Published: about 9 years ago

10.1128/AEM.02220-20

Influence of Spatial Scale on Structure of Soil Bacterial Communities across an Arctic Landscape
Cited by: 5
Author(s): Lucie Malard, Muhammad Zohaib Anwar, Carsten Suhr Jacobsen, David A. Pearce
Software Mentions: 6
Published: over 5 years ago

10.1242/dev.195883

The BMP antagonist gremlin 1 contributes to the development of cortical excitatory neurons, motor balance and fear responses
Cited by: 4
Author(s): Mari Ichinose, Nobumi Suzuki, Tongtong Wang, Hiroki Kobayashi, Laura Vrbanac, Joseph Kim Fai Ng, Josephine Wright, Tamsin R.M. Lannagan, Krystyna A. Gieniec, Martin Lewis, Ryosuke Ando, Atsushi Enomoto, Simon Koblar, Paul Q. Thomas, Daniel L. Worthley, Susan L. Woods
Software Mentions: 6
Published: almost 5 years ago

10.1371/journal.pone.0118867

A Deep Catalog of Autosomal Single Nucleotide Variation in the Pig
Cited by: 22
Author(s): Erica Bianco, Bruno Nevado, Sebastián E. Ramos-Onsins, Miguel Pérez‐Enciso
Software Mentions: 6
Published: over 11 years ago

10.1186/1752-0509-8-47

Fast Bayesian inference for gene regulatory networks using ScanBMA
Cited by: 78
Author(s): William Chad Young, Adrian E. Raftery, Ka Yee Yeung
Software Mentions: 6
Published: about 12 years ago

10.3390/v12101148

Review of Hepatitis E Virus in Rats: Evident Risk of Species Orthohepevirus C to Human Zoonotic Infection and Disease
Cited by: 36
Author(s): Gábor Reuter, Ákos Boros, Péter Pankovics
Software Mentions: 6
Published: over 5 years ago

10.3390/ijerph17113762

Psychometric Properties of the Condom Use Self-Efficacy Scale among Young Colombians
Cited by: 7
Author(s): Vanessa Sanchez-Mendoza, Encarnación Soriano Ayala, Pablo Vallejo‐Medina
Software Mentions: 6
Published: about 6 years ago

10.1111/hex.13227

Shortening and validation of the Patient Engagement In Research Scale (PEIRS) for measuring meaningful patient and family caregiver engagement
Cited by: 16
Author(s): Clayon B. Hamilton, Alison M. Hoens, Annette McKinnon, Shanon McQuitty, Kelly English, Lisa D. Hawke, Linda Li
Software Mentions: 6
Published: over 5 years ago

10.1371/journal.pone.0225266

Disentangling the coexistence strategies of mud-daubing wasp species through trophic analysis in oases of Baja California peninsula
Cited by: 4
Author(s): Armando Falcón‐Brindis, Ricardo Rodríguez‐Estrella, María-Luisa Jiménez
Software Mentions: 6
Published: over 6 years ago

10.1002/ece3.3142

Plant diversity has contrasting effects on herbivore and parasitoid abundance in <i>Centaurea jacea</i> flower heads
Cited by: 10
Author(s): Norma Nitschke, Eric Allan, H. Zwölfer, Lysett Wagner, Sylvia Creutzburg, Hannes Baur, Stefan Schmidt, Wolfgang W. Weisser
Software Mentions: 6
Published: over 8 years ago

10.1016/j.csbj.2019.04.012

Computational Methods for Mapping, Assembly and Quantification for Coding and Non-coding Transcripts
Cited by: 23
Author(s): Isaac A. Babarinde, Yuhao Li, Andrew P. Hutchins
Software Mentions: 6
Published: over 7 years ago

10.3390/microorganisms9010127

Gut Microbiota and Short-Chain Fatty Acid Profile between Normal and Moderate Malnutrition Children in Yogyakarta, Indonesia
Cited by: 15
Author(s): Rafli Zulfa Kamil, Agnes Murdiati, Mohammad Juffrie, Jiro Nakayama, Endang Sutriswati Rahayu
Software Mentions: 6
Published: over 5 years ago

10.1186/s12885-020-07438-4

A 38-gene model comprised of key TET2-associated genes shows additive utility to high-risk prostate cancer cases in the prognostication of biochemical recurrence
Cited by: 1
Author(s): Shivani Kamdar, Neil Fleshner, Bharati Bapat
Software Mentions: 6
Published: over 5 years ago

10.3390/microorganisms8071004

Relationship between the Oral and Vaginal Microbiota of South African Adolescents with High Prevalence of Bacterial Vaginosis
Cited by: 11
Author(s): Christina Balle, Rachel Esra, Enock Havyarimana, Shameem Z. Jaumdally, Katie Lennard, Iyaloo N. Konstantinus, Shaun Barnabas, Anna‐Ursula Happel, Katherine Gill, Tanya Pidwell, Jairam R. Lingappa, Hoyam Gamieldien, Linda‐Gail Bekker, Jo‐Ann S. Passmore, Heather B. Jaspan
Software Mentions: 6
Published: almost 6 years ago

10.3390/insects11080517

The Gut–Brain–Microbiome Axis in Bumble Bees
Cited by: 8
Author(s): Laura Leger, Quinn S. McFrederick
Software Mentions: 6
Published: almost 6 years ago

10.1111/age.12962

Using online tools at the Bovine Genome Database to manually annotate genes in the new reference genome
Cited by: 2
Author(s): Deborah A. Triant, J. J. Le Tourneau, Colin Diesh, Deepak Unni, Md. Shamimuzzaman, Amy T. Walsh, Jack M. Gardiner, Anna K Goldkamp, Yahan Li, Hung N. Nguyen, Courtney Roberts, Zhichao Zhao, L. J. Alexander, Jared E. Decker, Robert D. Schnabel, Steven G. Schroeder, Tad S. Sonstegard, Jeremy F. Taylor, Rocío Melissa Rivera, Darren E. Hagen, Christine G. Elsik
Software Mentions: 6
Published: about 6 years ago

10.1371/journal.pcbi.1004140

Speeding Up Ecological and Evolutionary Computations in R; Essentials of High Performance Computing for Biologists
Cited by: 16
Author(s): Marco D. Visser, Sean M. McMahon, Cory Merow, Philip M. Dixon, Sydne Record, Eelke Jongejans
Software Mentions: 6
Published: over 11 years ago

10.1186/s13073-014-0107-1

Complex host genetics influence the microbiome in inflammatory bowel disease
Cited by: 316
Author(s): Dan Knights, Mark S. Silverberg, Rinse K. Weersma, Dirk Gevers, Gerard Dijkstra, Hailiang Huang, Andrea D. Tyler, Suzanne van Sommeren, Floris Imhann, Joanne M. Stempak, Hu Huang, Pajau Vangay, Gabriel A. Al‐Ghalith, Caitlin Russell, Jenny Sauk, Jo Knight, Mark J. Daly, Curtis Huttenhower, Ramnik J. Xavier
Software Mentions: 6
Published: over 11 years ago

10.1128/mBio.01714-20

Repetitive Elements Contribute to the Diversity and Evolution of Centromeres in the Fungal Genus <i>Verticillium</i>
Cited by: 20
Author(s): Michael Seidl, Holger Kramer, David E. Cook, Gabriel Lorencini Fiorin, Grardy C. M. van den Berg, Luigi Faino, B.P.H.J. Thomma
Software Mentions: 6
Published: over 5 years ago

10.1038/s41598-021-89185-5

Cage and maternal effects on the bacterial communities of the murine gut
Cited by: 16
Author(s): Gurdeep Singh, Andy Brass, Sheena M. Cruickshank, Christopher G. Knight
Software Mentions: 6
Published: about 5 years ago

10.1534/g3.118.200986

Genomic Selection with Allele Dosage in <i>Panicum maximum</i> Jacq.
Cited by: 34
Author(s): Letícia Aparecida de Castro Lara, M. F. Santos, Liana Jank, Lucimara Chiari, Mariane de Mendonça Vilela, Rodrigo R. Amadeu, José Fortunato Ferreira Santos, Guilherme da Silva Pereira, Zhao‐Bang Zeng, Antônio Augusto Franco Garcia
Software Mentions: 6
Published: almost 7 years ago

10.1371/journal.pone.0241134

Detrimental effects of clothianidin on foraging and dance communication in honey bees
Cited by: 12
Author(s): Léa Tison, Aron Duer, Vanda Púčiková, Uwe Greggers, Randolf Menzel
Software Mentions: 6
Published: over 5 years ago

10.1186/s13071-015-0860-z

Parasites and vectors of malaria on Rusinga Island, Western Kenya
Cited by: 24
Author(s): Evelyn A Olanga, Lawrence Okombo, LW Irungu, Wolfgang R Mukabana
Software Mentions: 6
Published: about 11 years ago

10.1371/journal.pone.0152454

Toward Objective, Morphology-Based Taxonomy: A Case Study on the Malagasy Nesomyrmex sikorai Species Group (Hymenoptera: Formicidae)
Cited by: 15
Author(s): Sándor Csősz, Brian L. Fisher
Software Mentions: 6
Published: about 10 years ago

10.1007/s00572-021-01042-5

Ancient lineages of arbuscular mycorrhizal fungi provide little plant benefit
Cited by: 21
Author(s): Verena Säle, Javier Palenzuela, Concepción Azcón–Aguilar, Iván Sánchez-Castro, Gladstone Alves da Silva, Benjamin Seitz, Ewald Sieverding, Marcel G. A. van der Heijden, Fritz Oehl
Software Mentions: 6
Published: almost 5 years ago

10.1186/s12984-020-00717-y

Validity and reliability of an accelerometer-based assessgame to quantify upper limb selective voluntary motor control
Cited by: 8
Author(s): Jeffrey W. Keller, Annina Fahr, Julia Balzer, Jan Lieber, Hubertus J. A. van Hedel
Software Mentions: 6
Published: almost 6 years ago

10.1371/journal.pone.0217198

The transition from bee-to-fly dominated communities with increasing elevation and greater forest canopy cover
Cited by: 30
Author(s): Lindsie M. McCabe, Ella Colella, Paige R. Chesshire, Dave Smith, Neil S. Cobb
Software Mentions: 6
Published: about 7 years ago

10.1186/s13148-018-0582-0

Differential open chromatin profile and transcriptomic signature define depot-specific human subcutaneous preadipocytes: primary outcomes
Cited by: 20
Author(s): Adeline Divoux, Katalin Sandor, Dóra Bojcsuk, Amlan Talukder, Xiaoman Li, Bálint László Bálint, Timothy F. Osborne, Steven R. Smith
Software Mentions: 6
Published: over 7 years ago

10.1186/s40462-020-00236-4

Winter fidelity, movements, and energy expenditure of Midcontinent Greater White-fronted Geese
Cited by: 10
Author(s): Jay A. VonBank, Mitch D. Weegman, Paul Link, Stephanie A. Cunningham, Kevin J. Kraai, Daniel P. Collins, Bart M. Ballard
Software Mentions: 6
Published: over 5 years ago

10.3389/fonc.2021.665870

Prognostic and Predictive Value of Immune-Related Gene Pair Signature in Primary Lower-Grade Glioma Patients
Cited by: 2
Author(s): Kunjian Lei, Jingying Li, Zewei Tu, Feng Liu, Minhua Ye, Minxian Wu, Yue Zhu, Min Luo, Lin Li, Chuming Tao, Kai Huang, Xingen Zhu
Software Mentions: 6
Published: about 5 years ago

10.7717/peerj.5467

Unveiling community patterns and trophic niches of tropical and temperate ants using an integrative framework of field data, stable isotopes and fatty acids
Cited by: 17
Author(s): Félix Baumgarten Rosumek, Nico Blüthgen, Adrian Brückner, Florian Menzel, Gerhard Gebauer, Michael Heethoff
Software Mentions: 6
Published: almost 8 years ago

10.1038/s41598-021-87384-8

Field multi-omics analysis reveals a close association between bacterial communities and mineral properties in the soybean rhizosphere
Cited by: 11
Author(s): Shinichi Yamazaki, Hossein Mardani-Korrani, Rumi Kaida, Kumiko Ochiai, Masaru Kobayashi, Atsushi J. Nagano, Yoshiharu Fujii, Akifumi Sugiyama, Yosuke Aoki
Software Mentions: 6
Published: about 5 years ago

10.3389/fmicb.2021.701796

L-Canavanine, a Root Exudate From Hairy Vetch (Vicia villosa) Drastically Affecting the Soil Microbial Community and Metabolite Pathways
Cited by: 7
Author(s): Hossein Mardani-Korrani, Masaru Nakayasu, Shinichi Yamazaki, Yosuke Aoki, Rumi Kaida, Takashi Motobayashi, Masaru Kobayashi, Naoko Ohkama‐Ohtsu, Yosei Oikawa, Akifumi Sugiyama, Yoshiharu Fujii
Software Mentions: 6
Published: almost 5 years ago

10.1371/journal.pone.0132932

Spatiotemporal Patterns of Tumor Occurrence in Children with Intraocular Retinoblastoma
Cited by: 13
Author(s): Benjamin King, Carlos Parra, Yimei Li, Kathleen J. Helton, Ibrahim Qaddoumi, Matthew W. Wilson, Robert J. Ogg
Software Mentions: 6
Published: almost 11 years ago

10.1371/journal.pcbi.1007230

FAMoS: A Flexible and dynamic Algorithm for Model Selection to analyse complex systems dynamics
Cited by: 6
Author(s): Michael Gabel, Tobias M. Hohl, Andrea Imle, Oliver T. Fackler, Frederik Graw
Software Mentions: 6
Published: almost 7 years ago

10.1111/1755-0998.12676

<scp>treespace</scp> : Statistical exploration of landscapes of phylogenetic trees
Cited by: 131
Author(s): Thibaut Jombart, Michaela Kendall, Jacob Almagro-Garcia, Caroline Colijn
Software Mentions: 6
Published: about 9 years ago

10.3390/e22090937

belg: A Tool for Calculating Boltzmann Entropy of Landscape Gradients
Cited by: 7
Author(s): Jakub Nowosad, Peichao Gao
Software Mentions: 6
Published: almost 6 years ago

10.1371/journal.pbio.3000556

Parental breeding age effects on descendants’ longevity interact over 2 generations in matrilines and patrilines
Cited by: 26
Author(s): Zachariah Wylde, Foteini Spagopoulou, Amy K. Hooper, Alexei A. Maklakov, Russell Bonduriansky
Software Mentions: 6
Published: over 6 years ago

10.1038/s41598-017-19059-2

Consensus Clustering of temporal profiles for the identification of metabolic markers of pre-diabetes in childhood (EarlyBird 73)
Cited by: 4
Author(s): Mario Lauria, Maria Persico, N. Ðorđević, Ornella Cominetti, Alice Matone, Joanne Hosking, Alison Jeffery, Jonathan Pinkney, Laeticia Da Silva, Corrado Priami, Ivan Montoliu, François‐Pierre J. Martin
Software Mentions: 6
Published: over 8 years ago

10.3390/s20205947

A Pattern-Recognition-Based Ensemble Data Imputation Framework for Sensors from Building Energy Systems
Cited by: 7
Author(s): Liang Zhang
Software Mentions: 6
Published: over 5 years ago

10.1371/journal.pone.0195480

Natural regeneration on seismic lines influences movement behaviour of wolves and grizzly bears
Cited by: 33
Author(s): Laura Finnegan, Karine E. Pigeon, Jerome Cranston, Mark Hebblewhite, Marco Musiani, Lalenia Neufeld, Fiona K. A. Schmiegelow, Julie Duval, Gordon B. Stenhouse
Software Mentions: 6
Published: about 8 years ago

10.1186/s13071-019-3524-6

Metazoan parasite infracommunities of the dusky flounder (Syacium papillosum) as bioindicators of environmental conditions in the continental shelf of the Yucatan Peninsula, Mexico
Cited by: 30
Author(s): Víctor M. Vidal‐Martínez, Iván Velázquez‐Abunader, Oscar Arturo Centeno-Chalé, Ana Luisa May-Tec, Lilia C. Soler-Jiménez, Daniel Pech, Ismael Mariño‐Tapia, Cecilia Enríquez, Omar Zapata-Pérez, Jorge Herrera-Silveira, David Iván Hernández-Mena, Sharon Z. Herzka, Uriel Ordóñez-López, M. Leopoldina Aguirre-Macedo
Software Mentions: 6
Published: about 7 years ago

10.7554/eLife.03891

Spontaneous symbiotic reprogramming of plant roots triggered by receptor-like kinases
Cited by: 68
Author(s): Martina Katharina Ried, Meritxell Antolín-Llovera, Martin Parniske
Software Mentions: 6
Published: over 11 years ago

10.1038/s41438-021-00488-0

Cytokinin but not gibberellin application had major impact on the phenylpropanoid pathway in grape
Cited by: 23
Author(s): Kamal Tyagi, Itay Maoz, Bettina Kochanek, Noa Sela, Larry Lerno, Susan E. Ebeler, Amnon Lichter
Software Mentions: 6
Published: over 5 years ago

10.1590/1678-4685-GMB-2018-0259

Genome-wide analysis of the transcriptional response to drought stress in root and leaf of common bean
Cited by: 16
Author(s): Wendell Jacinto Pereira, Arthur Tavares de Oliveira Melo, Alexandre Siqueira Guedes Coelho, Fabiana Aparecida Rodrigues, Sujan Mamidi, Sérgio Amorim de Alencar, Anna Cristina Lanna, P. A. M. R. Valdisser, C. Brondani, Ivanildo Ramalho do Nascimento-Júnior, T. C. de O. Borba, R. P. Vianello
Software Mentions: 6
Published: over 6 years ago

10.1002/ece3.2360

Scale dependent drivers of wild bee diversity in tropical heterogeneous agricultural landscapes
Cited by: 32
Author(s): Prasenjit Basu, Arpan Kumar Parui, Sulagna Chatterjee, Arpan Dutta, Pushan Chakraborty, Stuart P. M. Roberts, Barbara Smith
Software Mentions: 6
Published: almost 10 years ago

10.3389/fgene.2021.664379

Putative Causal Variants Are Enriched in Annotated Functional Regions From Six Bovine Tissues
Cited by: 19
Author(s): Claire P. Prowse-Wilkins, Jianghui Wang, Ruidong Xiang, Josie B. Garner, Michael E. Goddard, Amanda J. Chamberlain
Software Mentions: 6
Published: about 5 years ago

10.1186/s13073-021-00939-2

Identification of TBX15 as an adipose master trans regulator of abdominal obesity genes
Cited by: 17
Author(s): David Z. Pan, Min‐Hua Zong, Caroline Comenho, Sandhya Rajkumar, Amogha Koka, Seung Hyuk Lee, Marcus Alvarez, Dorota Kaminska, Arthur Ko, Janet S. Sinsheimer, Karen L. Mohlke, Nicholas Mancuso, Linda Liliana Muñóz-Hernández, Miguel Francisco Herrera-Hernández, Marı́a Teresa Tusié-Luna, Carlos A. Aguilar-Salinas, Kirsi H. Pietiläinen, Jussi Pihlajamäki, Markku Laakso, Kristina M. Garske, Päivi Pajukanta
Software Mentions: 6
Published: almost 5 years ago

10.1186/s13007-020-00611-7

DiCoExpress: a tool to process multifactorial RNAseq experiments from quality controls to co-expression analysis through differential analysis based on contrasts inside GLM models
Cited by: 22
Author(s): Ilana Lambert, Christine Paysant‐Le Roux, Stefano Colella, Marie-Laure Martin
Software Mentions: 6
Published: about 6 years ago

10.3390/plants9020197

Tomato Phenotypic Diversity Determined by Combined Approaches of Conventional and High-Throughput Tomato Analyzer Phenotyping
Cited by: 19
Author(s): Amol N. Nankar, Ivanka Tringovska, Stanislava Grozeva, D. Ganeva, D. Kostova
Software Mentions: 6
Published: over 6 years ago

10.1128/AEM.02111-18

Resistance Gene Carriage Predicts Growth of Natural and Clinical Escherichia coli Isolates in the Absence of Antibiotics
Cited by: 7
Author(s): Richard C. Allen, Daniel C Angst, Alex R. Hall
Software Mentions: 6
Published: over 7 years ago

10.1186/1471-2105-15-170

Ensemble analyses improve signatures of tumour hypoxia and reveal inter-platform differences
Cited by: 24
Author(s): Natalie S. Fox, Maud H.W. Starmans, Syed Haider, Philippe Lambin, Paul C. Boutros
Software Mentions: 6
Published: about 12 years ago

10.1371/journal.pone.0221487

AdequacyModel: An R package for probability distributions and general purpose optimization
Cited by: 36
Author(s): Pedro Rafael Diniz Marinho, Rodrigo B. Silva, Marcelo Bourguignon, Gauss M. Cordeiro, Saralees Nadarajah
Software Mentions: 6
Published: almost 7 years ago

10.1038/s41598-020-75505-8

Proteomic signatures of acute oxidative stress response to paraquat in the mouse heart
Cited by: 12
Author(s): Vishantie Dostal, Silas D. Wood, Cody T Thomas, Yu Han, Edward Lau, Maggie P. Y. Lam
Software Mentions: 6
Published: over 5 years ago

10.1098/rspb.2021.0582

Disease or drought: environmental fluctuations release zebra from a potential pathogen-triggered ecological trap
Cited by: 7
Author(s): Yen‐Hua Huang, Hendrina Joel, Martina Küsters, Zoë R. Barandongo, Claudine C. Cloete, Axel Hartmann, Pauline L. Kamath, J. Kilian, John K. E. Mfune, Gabriel Shatumbu, Royi Zidon, Wayne M. Getz, Wendy C. Turner
Software Mentions: 6
Published: about 5 years ago

10.1093/gigascience/giaa117

Correcting for experiment-specific variability in expression compendia can remove underlying signals
Cited by: 16
Author(s): Alexandra Lee, YoSon Park, Georgia Doing, Deborah A. Hogan, Casey S. Greene
Software Mentions: 6
Published: over 5 years ago

10.1371/journal.pntd.0009633

Identification of potential biomarkers in dengue via integrated bioinformatic analysis
Cited by: 5
Author(s): Lisha Xie, Xin Yin, Jie Bi, Hongyu Luo, Xun‐Jie Cao, Yu-Wen Ma, Ye-Ling Liu, Jianwen Su, Geng-Ling Lin, Xu‐Guang Guo
Software Mentions: 6
Published: almost 5 years ago

10.1371/journal.pone.0201786

Multi-scale habitat preference analyses for Azorean blue whales
Cited by: 18
Author(s): Luis Pericot García, Graham J. Pierce, Emmanuelle Autret, Jesús Manuel Torres Palenzuela
Software Mentions: 6
Published: almost 8 years ago

10.1016/j.dib.2021.107264

Personalized prediction of repetitive transcranial magnetic stimulation clinical response in medication-refractory depression data
Cited by: 1
Author(s): Helene Hopman, Sandra S. M. Chan, Winnie Chiu Wing Chu, Hanna Lu, Chun‐Yu Tse, Steven Wai Ho Chau, Linda Chiu Wa Lam, Arthur F.T. Mak, Sebastiaan F. W. Neggers
Software Mentions: 6
Published: almost 5 years ago

10.1186/s12862-017-1025-9

Epigenetic variation between urban and rural populations of Darwin’s finches
Cited by: 50
Author(s): Sabrina M. McNew, Daniel Beck, Ingrid Sadler‐Riggleman, Sarah A. Knutie, Jennifer A. H. Koop, Dale H. Clayton, Michael K. Skinner
Software Mentions: 6
Published: almost 9 years ago

10.1371/journal.pone.0238396

Comparison between flaming, mowing and tillage weed control in the vineyard: Effects on plant community, diversity and abundance
Cited by: 22
Author(s): Matia Mainardis, Francesco Boscutti, Maria del Mar Rubio Cebolla, Gianfranco Pergher
Software Mentions: 6
Published: almost 6 years ago

10.1177/1747493018799962

A protocol for precise comparisons of small vessel disease lesions between ex vivo magnetic resonance imaging and histopathology
Cited by: 12
Author(s): Cathy Humphreys, Maurits A. Jansen, Susana Muñoz Maniega, V́ıctor González-Castro, Cyril Pernet, Ian J. Deary, Rustam Al-Shahi Salman, Joanna M. Wardlaw, Colin Smith
Software Mentions: 6
Published: almost 8 years ago

10.1038/s41598-021-87886-5

Metabolomics and transcriptomics to decipher molecular mechanisms underlying ectomycorrhizal root colonization of an oak tree
Cited by: 14
Author(s): Mónica Sebastiana, Albert Gargallo‐Garriga, Jordi Sardans, Míriam Pérez‐Trujillo, Filipa Monteiro, Andreia Figueiredo, Marisa Maia, Rui Nascimento, Marta Sousa Silva, António E. N. Ferreira, Carlos Cordeiro, A. Marques, Lisete Sousa, Rui Malhó, Josep Peñuelas
Software Mentions: 6
Published: about 5 years ago