10.1038/s41598-021-96403-7

Exercise interventions can improve muscle strength, endurance, and electrical activity of lumbar extensors in individuals with non-specific low back pain: a systematic review with meta-analysis
Cited by: 3
Author(s): Sacha Clael, Lorrane Freitas Campos, Karina Lisboa Correia, Joana Marcela Sales de Lucena, Paulo Gentil, João Luíz Quagliotti Durigan, Alexandre Lima de Araújo Ribeiro, Wagner Rodrigues Martins
Software Mentions: 7
Published: almost 5 years ago

10.3389/fgene.2021.744113

Identification and Validation of Hypoxia-Related lncRNA Signature as a Prognostic Model for Hepatocellular Carcinoma
Cited by: 8
Author(s): Chengke Zhou, Huajun Zhang, Liqing Lu
Software Mentions: 7
Published: over 4 years ago

10.2196/17110

Predicting Metabolic Syndrome With Machine Learning Models Using a Decision Tree Algorithm: Retrospective Cohort Study
Cited by: 26
Author(s): Cheng Yu, Yu Lin, Chang Hsien Lin, Sen Te Wang, Shiyng Yu Lin, Sanders H. Lin, Jenny L Wu, Shy Shin Chang
Software Mentions: 7
Published: over 6 years ago

10.3389/fimmu.2020.599637

Fecal IgA, Antigen Absorption, and Gut Microbiome Composition Are Associated With Food Antigen Sensitization in Genetically Susceptible Mice
Cited by: 17
Author(s): Johanna M. Smeekens, Brandi T. Johnson‐Weaver, Andrew Hinton, M. Andrea Azcárate-Peril, Timothy P. Moran, R.M. Immormino, Janelle Kesselring, Erin C. Steinbach, Kelly Orgel, Herman F. Staats, A. Wesley Burks, Peter J. Mucha, Martin T. Ferris, Michael D. Kulis
Software Mentions: 7
Published: over 5 years ago

10.1371/journal.pone.0239009

Building a green Belt and Road: A systematic review and comparative assessment of the Chinese and English-language literature
Cited by: 18
Author(s): Hoong Chen Teo, Ahimsa Campos‐Arceiz, Binbin V. Li, Mingquan Wu, Alex M. Lechner
Software Mentions: 7
Published: almost 6 years ago

10.1186/s12859-021-03984-1

PartSeg: a tool for quantitative feature extraction from 3D microscopy images for dummies
Cited by: 6
Author(s): Grzegorz Bokota, Jacek Sroka, Subhadip Basu, Nirmal K. Das, Paweł Trzaskoma, Yana Yushkevich, Agnieszka Grabowska, Adriana Magalska, Dariusz Plewczynski
Software Mentions: 7
Published: over 5 years ago

10.1186/s12935-020-01382-w

Establishment and validation of a novel nomogram incorporating clinicopathological parameters into the TNM staging system to predict prognosis for stage II colorectal cancer
Cited by: 15
Author(s): Shaobo Mo, Zheng Zhou, Yaqi Li, Xiang Hu, Xiaolong Ma, Long Zhang, Sanjun Cai, Junjie Peng
Software Mentions: 7
Published: almost 6 years ago

10.3389/fimmu.2018.01553

Single Cell RNA Sequencing of Rare Immune Cell Populations
Cited by: 88
Author(s): Akira Nguyen, Weng Hua Khoo, Imogen Moran, Peter I. Croucher, Tri Giang Phan
Software Mentions: 7
Published: almost 8 years ago

10.3390/microorganisms9071368

Insights into Autotrophic Activities and Carbon Flow in Iron-Rich Pelagic Aggregates (Iron Snow)
Cited by: 0
Author(s): Qianqian Li, Rebecca E. Cooper, Carl‐Eric Wegner, Martin Taubert, Nico Jehmlich, Martin von Bergen, Kirsten Küsel
Software Mentions: 7
Published: about 5 years ago

10.7150/jca.49707

Cancer-associated fibroblasts in gastric cancer affect malignant progression via the CXCL12-CXCR4 axis
Cited by: 20
Author(s): Qin Yan, Fang Wang, Hengli Ni, Yao Liu, Yuan Yin, Xinyi Zhou, Guihua Gao, Qing Li, Xiaowei Qi, Jianming Li
Software Mentions: 7
Published: over 5 years ago

10.3390/cells10092430

Artificial Intelligence-Assisted Identification of Genetic Factors Predisposing High-Risk Individuals to Asymptomatic Heart Failure
Cited by: 7
Author(s): Ning Yang, Chi-Hsiao Yeh, Tsung Hsien Tsai, Yi Ju Chou, Paul Wei Che Hsu, Chun-Hsien Li, Yun Hsuan Chan, Ling Kuo, Chun Tai Mao, Yu-Chiau Shyu, Ming‐Jui Hung, Chao‐Lun Lai, Huey Kang Sytwu, Ting Fen Tsai
Software Mentions: 7
Published: almost 5 years ago

10.1186/s12864-017-4268-3

GHOST: global hepatitis outbreak and surveillance technology
Cited by: 32
Author(s): Atkinson G. Longmire, Seth Sims, Inna Rytsareva, David S. Campo, Pavel Skums, Zoya Dimitrova, Sumathi Ramachandran, Magdalena Medrzycki, Hong Thai, Lilia Ganova-Raeva, Yulin Lin, Lili Punkova, Amanda Sue, Massimo Mirabito, Silver Wang, Robin Tracy, Victor Bolet, Thom Sukalac, Chris Lynberg, Yury Khudyakov
Software Mentions: 7
Published: over 8 years ago

10.1371/journal.pone.0124600

MLViS: A Web Tool for Machine Learning-Based Virtual Screening in Early-Phase of Drug Discovery and Development
Cited by: 36
Author(s): Selçuk Korkmaz, Gökmen Zararsız, Dinçer Göksülük
Software Mentions: 7
Published: about 11 years ago

10.3390/cancers13061296

Candidate Markers of Olaparib Response from Genomic Data Analyses of Human Cancer Cell Lines
Cited by: 3
Author(s): Setor Amuzu, Eurı́dice Carmona, Anne-Marie Mes-Masson, Celia M.T. Greenwood, Patricia N. Tonin, Jiannis Ragoussis
Software Mentions: 7
Published: over 5 years ago

10.1128/mSystems.00811-21

Separation of Donor and Recipient Microbial Diversity Allows Determination of Taxonomic and Functional Features of Gut Microbiota Restructuring following Fecal Transplantation
Cited by: 4
Author(s): Evgenii I. Olekhnovich, A. B. Ivanov, Vladimir Ulyantsev, Elena Ilina
Software Mentions: 7
Published: almost 5 years ago

10.1371/journal.pone.0215565

A robust data-driven genomic signature for idiopathic pulmonary fibrosis with applications for translational model selection
Cited by: 6
Author(s): Ron Ammar, Pitchumani Sivakumar, Gábor Járai, John Ryan Thompson
Software Mentions: 7
Published: about 7 years ago

10.1371/journal.pone.0225577

Designing machine learning workflows with an application to topological data analysis
Cited by: 4
Author(s): Eric Cawi, Patricio S. La Rosa, Arye Nehorai
Software Mentions: 7
Published: over 6 years ago

10.7554/eLife.59889

Cohesin residency determines chromatin loop patterns
Cited by: 45
Author(s): Lorenzo Costantino, Hsieh Ts, Rebecca Lamothe, Xavier Darzacq, Douglas Koshland
Software Mentions: 7
Published: over 5 years ago

10.1186/s13059-021-02466-0

Acute depletion of CTCF rewires genome-wide chromatin accessibility
Cited by: 26
Author(s): Beisi Xu, Hong Wang, Shaela Wright, Judith Hyle, Yang Zhang, Ying Shao, Mingming Niu, Yiping Fan, Wojciech Rosikiewicz, Mohamed Nadhir Djekidel, Junmin Peng, Rui Lu, Chunliang Li
Software Mentions: 7
Published: almost 5 years ago

10.1371/journal.pone.0237419

Development and validation of a model for individualized prediction of hospitalization risk in 4,536 patients with COVID-19
Cited by: 106
Author(s): Lara Jehi, Xinge Ji, Alex Milinovich, Serpil C. Erzurum, Amy Merlino, Steve Gordon, James B. Young, Michael W. Kattan
Software Mentions: 7
Published: almost 6 years ago

10.1371/journal.pcbi.1004925

PEPIS: A Pipeline for Estimating Epistatic Effects in Quantitative Trait Locus Mapping and Genome-Wide Association Studies
Cited by: 23
Author(s): Wenchao Zhang, Xinbin Dai, Qishan Wang, Shizhong Xu, Patrick Xuechun Zhao
Software Mentions: 7
Published: about 10 years ago

10.1371/journal.pone.0201016

Predicting hospital admission at emergency department triage using machine learning
Cited by: 155
Author(s): Woo Suk Hong, Adrian D. Haimovich, Richard A. Taylor
Software Mentions: 7
Published: almost 8 years ago

10.3390/ijms21134629

Differences in Gene Expression Profile of Primary Tumors in Metastatic and Non-Metastatic Papillary Thyroid Carcinoma—Do They Exist?
Cited by: 5
Author(s): Sylwia Szpak‐Ulczok, Aleksandra Pfeifer, Dagmara Rusinek, Małgorzata Oczko-Wojciechowska, M. Kowalska, Tomasz Tyszkiewicz, Marta Cieślicka, Daria Handkiewicz-Junak, Krzysztof Fujarewicz, Dariusz Lange, Ewa Chmielik, Ewa Zembala‐Nożyńska, Sebastian Student, Agnieszka Kotecka-Blicharz, Aneta Kluczewska-Gałka, Barbara Jarząb, Agnieszka Czarniecka, Michał Jarząb, Jolanta Krajewska
Software Mentions: 7
Published: almost 6 years ago

10.1371/journal.pone.0223010

KETOS: Clinical decision support and machine learning as a service – A training and deployment platform based on Docker, OMOP-CDM, and FHIR Web Services
Cited by: 27
Author(s): Julian Gruendner, Thorsten Schwachhofer, Phillip Sippl, Nicolas Wolf, Marcel Erpenbeck, Christian Gülden, Lorenz A. Kapsner, Jakob Zierk, Sebastian Mate, Michael Stürzl, Roland S. Croner, Hans‐Ulrich Prokosch, Dennis Toddenroth
Software Mentions: 7
Published: over 6 years ago

10.1371/journal.pone.0159138

Technical Advances of the Recombinant Antibody Microarray Technology Platform for Clinical Immunoproteomics
Cited by: 26
Author(s): Payam Delfani, Linda Dexlin Mellby, Malin Nordström, Andreas Holmér, Mattias Ohlsson, Carl Borrebaeck, Christer Wingren
Software Mentions: 7
Published: almost 10 years ago

10.3389/fpsyg.2017.00829

Differential Signatures of Second Language Syntactic Performance and Age on the Structural Properties of the Left Dorsal Pathway
Cited by: 6
Author(s): Kayako Yamamoto, Katsuyuki Sakai
Software Mentions: 7
Published: about 9 years ago

10.1038/s41598-021-88349-7

Landscape resistance constrains hybridization across contact zones in a reproductively and morphologically polymorphic salamander
Cited by: 4
Author(s): Guillermo Velo‐Antón, André Lourenço, Pedro Galán, Alfredo G. Nicieza, Pedro Tarroso
Software Mentions: 7
Published: about 5 years ago

10.1111/jcmm.16327

Development and verification of an immune‐related gene pairs prognostic signature in ovarian cancer
Cited by: 13
Author(s): Zhenan Bao, Xiaocui Nie, Xinxin Miao, Shengke Wang, Jing Li
Software Mentions: 7
Published: over 5 years ago

10.1002/ece3.7810

Visitation of artificial watering points by the red fox (<i>Vulpes vulpes</i>) in semiarid Australia
Cited by: 2
Author(s): David A. Roshier, Johannes Signer, Andrew Carter
Software Mentions: 7
Published: about 5 years ago

10.1371/journal.pone.0163962

SeqKit: A Cross-Platform and Ultrafast Toolkit for FASTA/Q File Manipulation
Cited by: 1,226
Author(s): Wei Shen, Shuai Le, Yan Li, Fuquan Hu
Software Mentions: 7
Published: over 9 years ago

10.1186/s12859-019-2899-x

Efficient estimation of grouped survival models
Cited by: 0
Author(s): Zhiguo Li, Jiaxing Lin, Alexander B. Sibley, Tracy Truong, Katherina C. Chua, Yu Jiang, Janice McCarthy, Deanna L. Kroetz, Andrew S. Allen, Kouros Owzar
Software Mentions: 7
Published: about 7 years ago

10.1186/1471-2105-14-S1-S1

Visualization of protein interaction networks: problems and solutions
Cited by: 70
Author(s): Giuseppe Agapito, Pietro Hiram Guzzi, Mario Cannataro
Software Mentions: 7
Published: over 13 years ago

10.1371/journal.pone.0197697

Agricultural matrices affect ground ant assemblage composition inside forest fragments
Cited by: 13
Author(s): Diego Santana Assis, Iracenir Andrade dos Santos, Flávio Nunes Ramos, Katty Elena Barrios-Rojas, Jonathan Majer, Evaldo F. Vilela
Software Mentions: 7
Published: about 8 years ago

10.1371/journal.pgen.1006864

Functional convergence of histone methyltransferases EHMT1 and KMT2C involved in intellectual disability and autism spectrum disorder
Cited by: 101
Author(s): Tom S. Koemans, Tjitske Kleefstra, Melissa C. Chubak, Max H. Stone, Margot R.F. Reijnders, Sonja de Munnik, Marjolein H. Willemsen, Michaela Fencková, Connie Stumpel, Levinus A. Bok, Margarita Saenz, Kyna A. Byerly, Linda B. Baughn, Alexander P.A. Stegmann, Rolph Pfundt, Huiqing Zhou, Hans van Bokhoven, Annette Schenck, Jamie M. Kramer
Software Mentions: 7
Published: over 8 years ago

10.1007/s00248-019-01426-3

Fusarium Head Blight Modifies Fungal Endophytic Communities During Infection of Wheat Spikes
Cited by: 45
Author(s): Edward C. Rojas, Rumakanta Sapkota, Birgit Jensen, Henning Jørgensen, Tina Henriksson, Lise Nistrup Jørgensen, Mogens Nicolaisen, David B. Collinge
Software Mentions: 7
Published: almost 7 years ago

10.3389/fcell.2021.659080

ANXA1 as a Prognostic and Immune Microenvironmental Marker for Gliomas Based on Transcriptomic Analysis and Experimental Validation
Cited by: 8
Author(s): Zhongxiao Lin, Ming‐Shien Wen, Enxing Yu, Xiao Yan Lin, Hua Wang, Jiayu Chen, Chaojie Yao, Hengli Zhang, Junnan Ru, Kankai Wang, Ying Zhang, Lijie Huang, Qichuan Zhuge, Shuxu Yang
Software Mentions: 7
Published: almost 5 years ago

10.3390/insects12050388

Designing Aedes (Diptera: Culicidae) Mosquito Traps: The Evolution of the Male Aedes Sound Trap by Iterative Evaluation
Cited by: 3
Author(s): Kyran M. Staunton, Jianyi Liu, Michael Townsend, Mark Desnoyer, Paul Howell, Jacob E. Crawford, Xiang Wang, Nigel Snoad, Thomas R. Burkot, Scott A. Ritchie
Software Mentions: 7
Published: about 5 years ago

10.3389/fninf.2014.00023

CyNEST: a maintainable Cython-based interface for the NEST simulator
Cited by: 22
Author(s): Yury V. Zaytsev, Abigail Morrison
Software Mentions: 7
Published: over 12 years ago

10.7554/eLife.41815

Immune genes are hotspots of shared positive selection across birds and mammals
Cited by: 109
Author(s): Allison J. Shultz, Timothy B. Sackton
Software Mentions: 7
Published: over 7 years ago

10.3390/ijms21165923

Oxidant-Induced Alterations in the Adipocyte Transcriptome: Role of the Na,K-ATPase Oxidant Amplification Loop
Cited by: 7
Author(s): Komal Sodhi, James Denvir, Jiang Liu, Juan Sanabria, Yiliang Chen, Roy L. Silverstein, Zijian Xie, Nader G. Abraham, Joseph I. Shapiro
Software Mentions: 7
Published: almost 6 years ago

10.1038/s41598-021-95011-9

From individual to population level: Temperature and snow cover modulate fledging success through breeding phenology in greylag geese (Anser anser)
Cited by: 3
Author(s): Didone Frigerio, Petra Sumasgutner, Kurt Kotrschal, Sonia Kleindorfer, Josef Hemetsberger
Software Mentions: 7
Published: almost 5 years ago

10.1371/journal.pone.0189860

Survival analysis and classification methods for forest fire size
Cited by: 14
Author(s): Pier Olivier Tremblay, Thierry Duchesne, Steven G. Cumming
Software Mentions: 7
Published: over 8 years ago

10.1002/ece3.2762

Context‐dependent functional dispersion across similar ranges of trait space covered by intertidal rocky shore communities
Cited by: 25
Author(s): Nelson Valdivia, V. Segovia-Rivera, Eliseo Fica, César C. Bonta, Moisés A. Aguilera, Bernardo R. Broitman
Software Mentions: 7
Published: over 9 years ago

10.1371/journal.pcbi.1008329

An extended catalogue of tandem alternative splice sites in human tissue transcriptomes
Cited by: 6
Author(s): Aleksei Mironov, Stepan Denisov, Alexander Greß, Olga V. Kalinina, Dmitri D. Pervouchine
Software Mentions: 7
Published: about 5 years ago

10.3389/fpsyg.2019.03013

Language Processing as a Precursor to Language Change: Evidence From Icelandic
Cited by: 9
Author(s): Ina Bornkessel‐Schlesewsky, Dietmar Roehm, Robert Mailhammer
Software Mentions: 7
Published: over 6 years ago

10.3389/fimmu.2019.02903

Co-expression Networks Identify DHX15 RNA Helicase as a B Cell Regulatory Factor
Cited by: 6
Author(s): Thiago Detanico, Richard Virgen-Slane, Seth Steen-Fuentes, Wai Wai Lin, Antje Rhode-Kurnow, Elizabeth Chappell, Ricardo G. Correa, Michael J Dicandido, Moustapha Mbow, Jun Li, Carl F. Ware
Software Mentions: 7
Published: over 6 years ago

10.3389/fpsyg.2017.02165

Microsatellite Polymorphisms Adjacent to the Oxytocin Receptor Gene in Domestic Cats: Association with Personality?
Cited by: 10
Author(s): Minori Arahori, Hitomi Chijiiwa, Saho Takagi, Benoit Bucher, Hideaki Abe, Miho Inoue‐Murayama, Kazuo Fujita
Software Mentions: 7
Published: over 8 years ago

10.3389/fpls.2020.619589

Priming by Timing: Arabidopsis thaliana Adjusts Its Priming Response to Lepidoptera Eggs to the Time of Larval Hatching
Cited by: 18
Author(s): Georgios Valsamakis, Norbert Bittner, Nina E. Fatouros, Reinhard Kunze, Monika Hilker, Tobias Lortzing
Software Mentions: 7
Published: over 5 years ago

10.1186/s12859-021-04098-4

An introduction to new robust linear and monotonic correlation coefficients
Cited by: 7
Author(s): Mohammad Tabatabai, S. L. Bailey, Zoran Bursac, Habib Tabatabai, Derek Wilus, Karan P. Singh
Software Mentions: 7
Published: about 5 years ago

10.1111/1751-7915.13640

Synthetic community with six <i>Pseudomonas</i> strains screened from garlic rhizosphere microbiome promotes plant growth
Cited by: 55
Author(s): Lubo Zhuang, Yán Li, Zhenshuo Wang, Yue Yu, Nan Zhang, Chang Yeol Yang, Qingchao Zeng, Qi Wang
Software Mentions: 7
Published: almost 6 years ago

10.1371/journal.pone.0071515

Genomic Investigation into Strain Heterogeneity and Pathogenic Potential of the Emerging Gastrointestinal Pathogen Campylobacter ureolyticus
Cited by: 21
Author(s): Susan Bullman, Alan Lucid, Daniel Corcoran, Roy D. Sleator, Brigid Lucey
Software Mentions: 7
Published: almost 13 years ago

10.1007/s00426-020-01314-3

Affective states influence emotion perception: evidence for emotional egocentricity
Cited by: 16
Author(s): Irene Trilla, Anne Weigand, Isabel Dziobek
Software Mentions: 7
Published: over 6 years ago

10.1534/g3.120.401325

Adapting Genotyping-by-Sequencing and Variant Calling for Heterogeneous Stock Rats
Cited by: 17
Author(s): Alexander F. Gileta, Jianjun Gao, Apurva S. Chitre, Hannah Bimschleger, Celine L. St. Pierre, Shyam Gopalakrishnan, Abraham A. Palmer
Software Mentions: 7
Published: almost 6 years ago

10.18632/oncotarget.27808

Identification of novel prognostic markers of survival time in high-risk neuroblastoma using gene expression profiles
Cited by: 6
Author(s): Abdulazeez Giwa, Azeez Ayomide Fatai, Junaid Gamieldien, Alan Christoffels, Hocine Bendou
Software Mentions: 7
Published: over 5 years ago

10.3389/fmicb.2019.02197

Composition of Bacterial and Archaeal Communities in an Alkali-Surfactant-Polyacrylamide-Flooded Oil Reservoir and the Responses of Microcosms to Nutrients
Cited by: 14
Author(s): Peike Gao, Li Yu, Liang Tan, Feifei Guo, Ting Ma
Software Mentions: 7
Published: almost 7 years ago

10.1186/s12862-015-0499-6

Analysis of 5’ gene regions reveals extraordinary conservation of novel non-coding sequences in a wide range of animals
Cited by: 7
Author(s): Nathaniel J. Davies, Peter Krusche, Eran Tauber, Sascha Ott
Software Mentions: 7
Published: over 10 years ago

10.3390/jcm10173971

A Target for Increased Mortality Risk in Critically Ill Patients: The Concept of Perpetuity
Cited by: 1
Author(s): Jarrod Mosier, Julia M. Fisher, Cameron Hypes, Edward J. Bedrick, Elizabeth Salvagio Campbell, Karen Lutrick, Charles B. Cairns
Software Mentions: 7
Published: almost 5 years ago

10.12688/f1000research.15830.2

An accessible, interactive GenePattern Notebook for analysis and exploration of single-cell transcriptomic data
Cited by: 2
Author(s): Clarence K. Mah, Alexander T. Wenzel, Edwin F. Juarez, Thorin Tabor, Michael Reich, Jill P. Mesirov
Software Mentions: 7
Published: about 7 years ago

10.3389/fpls.2021.693739

Comparative Metabolomics of Fruits and Leaves in a Hyperdiverse Lineage Suggests Fruits Are a Key Incubator of Phytochemical Diversification
Cited by: 11
Author(s): Gerald Schneider, Diego Salazar, Sherry B. Hildreth, Richard Helm, Susan R. Whitehead
Software Mentions: 7
Published: almost 5 years ago

10.1371/journal.pone.0242486

Altered feeding behavior and immune competence in paper wasps: A case of parasite manipulation?
Cited by: 3
Author(s): L. Beani, Marta Mariotti Lippi, Nadia Mulinacci, Fabio Manfredini, Lorenzo Cecchi, C. Giuliani, Corrado Tani, Niccolò Meriggi, Duccio Cavalieri, Federico Cappa
Software Mentions: 7
Published: over 5 years ago

10.3389/fphar.2020.613328

Pharmacological Prevention of Neonatal Opioid Withdrawal in a Pregnant Guinea Pig Model
Cited by: 3
Author(s): Alireza Safa, Allison R. Lau, Sydney Aten, Karl Schilling, Karen L. Bales, Victoria A. Miller, Julie Fitzgerald, Min Chen, Katherine E. Hill, Kyle Dzwigalski, Karl Obrietan, Mitch A. Phelps, Wolfgang Sadée, John Oberdick
Software Mentions: 7
Published: over 5 years ago

10.3389/fmicb.2018.02528

Bacterial Diversity and the Geochemical Landscape in the Southwestern Gulf of Mexico
Cited by: 32
Author(s): Elizabeth Ernestina Godoy-Lozano, Alejandra Escobar‐Zepeda, Luciana Raggi, Enrique Merino, Rosa Marı́a Gutiérrez-Rı́os, Katy Juarez, Lorenzo Segovia, Alexei F. Licea-Navarro, Adolfo Gracía, Alejandro Sánchez-Flores, Liliana Pardo-López
Software Mentions: 7
Published: over 7 years ago

10.1038/s41598-021-80970-w

Breath can discriminate tuberculosis from other lower respiratory illness in children
Cited by: 19
Author(s): Carly A. Bobak, Lili Kang, Lesley Workman, Lindy Bateman, Mohammad Sharif Khan, Margaretha Prins, Lloyd May, Flavio A. Franchina, Cynthia Baard, Mark P. Nicol, Heather J. Zar, Jane E. Hill
Software Mentions: 7
Published: over 5 years ago

10.1038/s41598-018-21197-0

Effects of timber harvesting on the genetic potential for carbon and nitrogen cycling in five North American forest ecozones
Cited by: 14
Author(s): Erick Cardenas, Luis H. Orellana, Konstantinos T. Konstantinidis, William W. Mohn
Software Mentions: 7
Published: over 8 years ago

10.1371/journal.pcbi.1000589

A Quick Guide for Developing Effective Bioinformatics Programming Skills
Cited by: 45
Author(s): Joel T. Dudley, Atul J. Butte
Software Mentions: 7
Published: over 16 years ago

10.3389/fmicb.2020.566619

Competitive Exclusion Prevents Colonization and Compartmentalization Reduces Transmission of ESBL-Producing Escherichia coli in Broilers
Cited by: 13
Author(s): Anita Dame-Korevaar, Jannigje G. Kers, Jeanet van der Goot, Francisca C. Velkers, Daniela Ceccarelli, Dik Mevius, Arjan Stegeman, E.A.J. Fischer
Software Mentions: 7
Published: over 5 years ago

10.1002/ece3.4296

Landscape genetics identifies streams and drainage infrastructure as dispersal corridors for an endangered wetland bird
Cited by: 12
Author(s): Charles B. van Rees, J. Michael Reed, R. E. Wilson, Jared G. Underwood, Sarah A. Sonsthagen
Software Mentions: 7
Published: almost 8 years ago

10.1038/s41598-018-34933-3

Strong association between vertebral endplate defect and Modic change in the general population
Cited by: 32
Author(s): Juhani Määttä, Marinko Rade, Maxim B. Freidin, Olavi Airaksinen, Jaro Karppinen, Frances Williams
Software Mentions: 7
Published: over 7 years ago

10.1186/s12859-017-1974-4

CORNAS: coverage-dependent RNA-Seq analysis of gene expression data without biological replicates
Cited by: 14
Author(s): Joel Zi-Bin Low, Tsung Fei Khang, Martti T. Tammi
Software Mentions: 7
Published: over 8 years ago

10.1038/s41598-021-88662-1

A network analysis of crab metamorphosis and the hypothesis of development as a process of unfolding of an intensive complexity
Cited by: 2
Author(s): Agustín Ostachuk
Software Mentions: 7
Published: about 5 years ago

10.18632/aging.103671

Target RNA modification for epigenetic drug repositioning in neuroblastoma: computational omics proximity between repurposing drug and disease
Cited by: 6
Author(s): Pei Ma, Lifeng Yue, Sen Zhang, Da‐Cheng Hao, Zhihong Wu, Lijia Xu, Guanhua Du, Pei‐Gen Xiao
Software Mentions: 7
Published: over 5 years ago

10.1371/journal.pgen.1008984

Natural variation in a glucuronosyltransferase modulates propionate sensitivity in a C. elegans propionic acidemia model
Cited by: 16
Author(s): Huimin Na, Stefan Zdraljevic, Robyn E. Tanny, Albertha J.M. Walhout, Erik C. Andersen
Software Mentions: 7
Published: almost 6 years ago

10.1371/journal.pntd.0008333

Spatial epidemiology of Japanese encephalitis virus and other infections of the central nervous system infections in Lao PDR (2003–2011): A retrospective analysis
Cited by: 2
Author(s): Sayaphet Rattanavong, Audrey Dubot‐Pérès, Mayfong Mayxay, Manivanh Vongsouvath, Sue J. Lee, Julien Cappelle, Paul N. Newton, Daniel M. Parker
Software Mentions: 7
Published: about 6 years ago

10.1371/journal.pone.0219960

Early treated HIV-infected children remain at risk of growth retardation during the first five years of life: Results from the ANRS-PEDIACAM cohort in Cameroon
Cited by: 7
Author(s): Casimir Ledoux Sofeu, Mathurin Cyrille Tejiokem, Calixte Ida Penda, Camélia Protopopescu, Francis Atéba Ndongo, Suzie Tetang Ndiang, Georgette Guemkam, Josiane Warszawski, Albert Faye, Roch Giorgi
Software Mentions: 7
Published: almost 7 years ago

10.1371/journal.pone.0253277

Dogs fail to reciprocate the receipt of food from a human in a food-giving task
Cited by: 1
Author(s): Jim McGetrick, Lisa Poncet, Marietta Amann, Johannes Schullern-Schrattenhofen, Leona Fux, Mayte Martínez, Friederike Range
Software Mentions: 7
Published: almost 5 years ago

10.3390/vaccines7030113

TIV Vaccination Modulates Host Responses to Influenza Virus Infection that Correlate with Protection against Bacterial Superinfection
Cited by: 5
Author(s): Angela Choi, Ioanna Christopoulou, Xavier Saelens, Adolfo Garcı́a-Sastre, Michael Schotsaert
Software Mentions: 7
Published: almost 7 years ago

10.1371/journal.pgen.1003733

Histone Variant HTZ1 Shows Extensive Epistasis with, but Does Not Increase Robustness to, New Mutations
Cited by: 45
Author(s): Joshua B. Richardson, Locke Uppendahl, Maria K. Traficante, Sasha F. Levy, Mark L. Siegal
Software Mentions: 7
Published: almost 13 years ago

10.1371/journal.pone.0196488

Symbols in motion: Flexible cultural boundaries and the fast spread of the Neolithic in the western Mediterranean
Cited by: 31
Author(s): Solange Rigaud, Claire Manen, Íñigo García-Martínez de Lagrán
Software Mentions: 7
Published: about 8 years ago

10.3389/fninf.2019.00059

PyParadigm—A Python Library to Build Screens in a Declarative Way
Cited by: 1
Author(s): Felix G. Knorr, Johannes Petzold, Michael Marxen
Software Mentions: 7
Published: almost 7 years ago

10.1371/journal.pone.0239864

Hybrid algorithms for generating optimal designs for discriminating multiple nonlinear models under various error distributional assumptions
Cited by: 6
Author(s): Chih-Chia Chen, Ping Yang Chen, Cheng Lin Hsu, Weng Kee Wong
Software Mentions: 7
Published: over 5 years ago

10.7717/peerj.7038

Decoupled recovery of ecological communities after reclamation
Cited by: 3
Author(s): Zachary A. Sylvain, David H. Branson, Tatyana A. Rand, Natalie M. West, Erin K. Espeland
Software Mentions: 7
Published: about 7 years ago

10.3758/s13428-020-01479-0

Analytical power calculations for structural equation modeling: A tutorial and Shiny app
Cited by: 27
Author(s): Suzanne Jak, Terrence D. Jorgensen, Mathilde G. E. Verdam, Frans Oort, Louise Elffers
Software Mentions: 7
Published: over 5 years ago

10.3390/metabo9020024

Metabolic Alterations in Male-Sterile Potato as Compared to Male-Fertile
Cited by: 13
Author(s): М. Ф. Шишова, Roman Puzanskiy, О. А. Гаврилова, Shamuhommed Kurbanniazov, Kirill N. Demchenko, Vladislav V. Yemelyanov, Galina Pendinen, А. Л. Шаварда, Т. А. Гавриленко
Software Mentions: 7
Published: over 7 years ago

10.1002/ece3.5188

Invasive species removal increases species and phylogenetic diversity of wetland plant communities
Cited by: 12
Author(s): Shane C. Lishawa, Beth A. Lawrence, Dennis A. Albert, Daniel J. Larkin, Nancy C. Tuchman
Software Mentions: 7
Published: about 7 years ago

10.7717/peerj.9602

The role of m6A-related genes in the prognosis and immune microenvironment of pancreatic adenocarcinoma
Cited by: 58
Author(s): Rong Tang, Yiyin Zhang, Chen Liang, Jin Xu, Qingcai Meng, Jie Hua, Jiang Liu, Bo Zhang, Xianjun Yu, Si Shi
Software Mentions: 7
Published: over 5 years ago

10.3390/s20154131

Framework and Methodology for Establishing Port-City Policies Based on Real-Time Composite Indicators and IoT: A Practical Use-Case
Cited by: 8
Author(s): Ignacio Lacalle, Andreu Belsa, Rafael Vaño, Carlos E. Palau
Software Mentions: 7
Published: almost 6 years ago

10.1371/journal.pone.0120800

Seasonal Patterns of Hormones, Macroparasites, and Microparasites in Wild African Ungulates: The Interplay among Stress, Reproduction, and Disease
Cited by: 57
Author(s): Carrie A. Cizauskas, Wendy C. Turner, Neville Pitts, Wayne M. Getz
Software Mentions: 7
Published: about 11 years ago

10.1371/journal.pntd.0007185

Ebola virus disease-related stigma among survivors declined in Liberia over an 18-month, post-outbreak period: An observational cohort study
Cited by: 21
Author(s): John D. Kelly, Sheri D. Weiser, Barthalomew Wilson, Joseph B. Cooper, Meekie Glayweon, Michael C. Sneller, Clara Drew, Wayne T. Steward, Cavan Reilly, Kumblytee Johnson, Mosoka Fallah
Software Mentions: 7
Published: over 7 years ago

10.1371/journal.pone.0232682

A chronological model for the Late Paleolithic at Shuidonggou Locality 2, North China
Cited by: 10
Author(s): Fei Peng, Sam C. Lin, Ilaria Patania, Vladimir Levchenko, Jialong Guo, Huimin Wang, Xing Gao
Software Mentions: 7
Published: about 6 years ago

10.1038/s41418-021-00751-w

Bromodomain protein BRDT directs ΔNp63 function and super-enhancer activity in a subset of esophageal squamous cell carcinomas
Cited by: 17
Author(s): Xin Wang, Ana P. Kutschat, Mitsuko Yamada, Evangelos Prokakis, Patricia Böttcher, Koji Tanaka, Yuichiro Doki, Feda H. Hamdan, Steven A. Johnsen
Software Mentions: 7
Published: over 5 years ago

10.1371/journal.pone.0131276

Geo-Referenced, Abundance Calibrated Ocean Distribution of Chinook Salmon (Oncorhynchus tshawytscha) Stocks across the West Coast of North America
Cited by: 20
Author(s): M. Renee Bellinger, Michael Banks, Sarah J. Bates, Eric D. Crandall, John Carlos Garza, Gilbert Sylvia, Peter W. Lawson
Software Mentions: 7
Published: almost 11 years ago

10.1371/journal.pone.0231773

Perceived socio-economic impacts of the marbled crayfish invasion in Madagascar
Cited by: 19
Author(s): Ranja Andriantsoa, Julia P. G. Jones, Vlad Achimescu, Heriniaina Randrianarison, Miary Raselimanana, Manjary Andriatsitohaina, Jeanne Rasamy, Frank Lyko
Software Mentions: 7
Published: about 6 years ago

10.3389/fmicb.2014.00601

The R package otu2ot for implementing the entropy decomposition of nucleotide variation in sequence data
Cited by: 8
Author(s): Alban Ramette, Pier Luigi Buttigieg
Software Mentions: 7
Published: over 11 years ago

10.1186/s12864-015-1270-5

Expression and regulation of long noncoding RNAs in TLR4 signaling in mouse macrophages
Cited by: 43
Author(s): Aiping Mao, Jun Shen, Zhixiang Zuo
Software Mentions: 7
Published: over 11 years ago

10.1371/journal.pone.0241777

Soil nematode functional diversity, successional patterns, and indicator taxa associated with vertebrate decomposition hotspots
Cited by: 7
Author(s): Lois S. Taylor, Gary L. Phillips, Ernest C. Bernard, Jennifer M. DeBruyn
Software Mentions: 7
Published: over 5 years ago

10.3390/cancers13071730

Identification and Validation of an Immune-Associated RNA-Binding Proteins Signature to Predict Clinical Outcomes and Therapeutic Responses in Glioma Patients
Cited by: 11
Author(s): Ruotong Tian, Yimin Li, Qian Liu, Minfeng Shu
Software Mentions: 7
Published: about 5 years ago

10.7554/eLife.56523

DAZL mediates a broad translational program regulating expansion and differentiation of spermatogonial progenitors
Cited by: 25
Author(s): Maria M. Mikedis, Yuting Fan, Peter K. Nicholls, Toshihiko Endo, Emily Jackson, Sarah A. Cobb, Dirk G. de Rooij, David C. Page
Software Mentions: 7
Published: almost 6 years ago

10.3389/fgene.2021.635863

Identification and Validation of a Novel DNA Damage and DNA Repair Related Genes Based Signature for Colon Cancer Prognosis
Cited by: 16
Author(s): Xuequan Wang, Shiwen Xu, Wei Wang, Shang Guo Piao, Xin-Li Mao, Xian-Bin Zhou, Yi Wang, Weidan Wu, Liping Ye, Shaowei Li
Software Mentions: 7
Published: over 5 years ago

10.3389/fimmu.2021.665312

An IRF1-IRF4 Toggle-Switch Controls Tolerogenic and Immunogenic Transcriptional Programming in Human Langerhans Cells
Cited by: 8
Author(s): James Davies, Andrés F. Vallejo, Sofía Sirvent, Gemma Porter, Kalum Clayton, Yamkela Qumbelo, Patrick S. Stumpf, Jonathan West, Clive M. Gray, Nyaradzo T. L. Chigorimbo‐Murefu, Ben D. MacArthur, Marta E. Polak
Software Mentions: 7
Published: about 5 years ago

10.1371/journal.pone.0200954

Genotypic variation in plant traits shapes herbivorous insect and ant communities on a foundation tree species
Cited by: 31
Author(s): Hilary L. Barker, Liza M. Holeski, Richard L. Lindroth
Software Mentions: 7
Published: almost 8 years ago