10.1080/19336896.2021.1924557

Transcriptomic analysis of zebrafish prion protein mutants supports conserved cross-species function of the cellular prion protein
Cited by: 1
Author(s): Niall M. Pollock, Patricia L.A. Leighton, Gavin J. Neil, W. Ted Allison
Software Mentions: 4
Published: over 5 years ago

10.3389/fcimb.2016.00193

Genome-Wide Transcriptional and Post-transcriptional Regulation of Innate Immune and Defense Responses of Bovine Mammary Gland to Staphylococcus aureus
Cited by: 41
Author(s): Lingzhao Fang, Yali Hou, Jinpeng An, Bingjie Li, Mengyuan Song, Xiao Wang, Peter Sørensen, Yichun Dong, Chao Liu, Yachun Wang, Huabin Zhu, Shengli Zhang, Ying Yu
Software Mentions: 4
Published: over 9 years ago

10.3390/jcm8101535

Connecting Histopathology Imaging and Proteomics in Kidney Cancer through Machine Learning
Cited by: 30
Author(s): Francisco Azuaje, Sang Yoon Kim, Daniel Hernández, Gunnar Dittmar
Software Mentions: 4
Published: almost 7 years ago

10.1111/jcmm.16818

The role of YTH domain containing 2 in epigenetic modification and immune infiltration of pan‐cancer
Cited by: 16
Author(s): Chiyuan Zhang, Cuishan Guo, Yan Li, Liang Ouyang, Qi Zhao, Kuiran Liu
Software Mentions: 4
Published: about 5 years ago

10.1186/s12968-017-0387-x

A novel multiparametric imaging approach to acute myocarditis using T2-mapping and CMR feature tracking
Cited by: 30
Author(s): Bettina Baeßler, Melanie Treutlein, Frank Schaarschmidt, Christian Stehning, Bernhard Schnackenburg, Guido Michels, David Maintz, Alexander C. Bunck
Software Mentions: 4
Published: almost 9 years ago

10.1111/joa.13188

Anatomy of avian rictal bristles in Caprimulgiformes reveals reduced tactile function in open‐habitat, partially diurnal foraging species
Cited by: 5
Author(s): Mariane G. Delaunay, Carl Larsen, Huw Lloyd, Matthew Sullivan, Robyn A. Grant
Software Mentions: 4
Published: over 6 years ago

10.3390/jcm10020325

Aorto-Iliac Artery Calcification and Graft Outcomes in Kidney Transplant Recipients
Cited by: 6
Author(s): Stan Benjamens, Saleh Z Alghamdi, Elsaline Rijkse, Charlotte A Te Velde-Keyzer, Stefan P. Berger, Cyril Moers, Martin H. de Borst, Riemer H. J. A. Slart, Frank J. M. F. Dor, Robert C. Minnee, Robert A. Pol
Software Mentions: 4
Published: over 5 years ago

10.1172/JCI130809

A stress-responsive enhancer induces dynamic drug resistance in acute myeloid leukemia
Cited by: 25
Author(s): Mark S. Williams, Fabio Amaral, Fabrizio Simeoni, Tim C. P. Somervaille
Software Mentions: 4
Published: over 6 years ago

10.7150/jca.51173

Identification of a Prognostic Signature Model with Tumor Microenvironment for predicting Disease-free Survival after Radical Prostatectomy
Cited by: 6
Author(s): Hao Zhao, Xuening Zhang, Zhan Shi, Bingxin Guo, Wenli Zhang, Kun He, Xueqi Hu, Songhe Shi
Software Mentions: 4
Published: over 5 years ago

10.7717/peerj.10082

Using trace elements to identify the geographic origin of migratory bats
Cited by: 8
Author(s): Jamin G. Wieringa, Juliet Nagel, David M. Nelson, Bryan C. Carstens, H. Lisle Gibbs
Software Mentions: 4
Published: almost 6 years ago

10.1371/journal.ppat.1009234

Winter is coming–Temperature affects immune defenses and susceptibility to Batrachochytrium salamandrivorans
Cited by: 20
Author(s): Edward Davis Carter, Molly C. Bletz, Mitchell Le Sage, Brandon LaBumbard, Louise A. Rollins‐Smith, Douglas C. Woodhams, Debra L. Miller, Matthew J. Gray
Software Mentions: 4
Published: over 5 years ago

10.1098/rspb.2020.2722

Supplemented nutrition decreases helminth burden and increases drug efficacy in a natural host–helminth system
Cited by: 17
Author(s): Amy R. Sweeny, Melanie Clerc, Paulina A. Pontifes, Saudamini Venkatesan, Simon A. Babayan, Amy B. Pedersen
Software Mentions: 4
Published: over 5 years ago

10.1128/mSphere.00560-17

Systematic Bias Introduced by Genomic DNA Template Dilution in 16S rRNA Gene-Targeted Microbiota Profiling in Human Stool Homogenates
Cited by: 17
Author(s): Francesco Multinu, Sean C. Harrington, Jun Chen, Patricio Jeraldo, Stephen Johnson, Nicholas Chia, Marina Walther-Antonio
Software Mentions: 4
Published: over 8 years ago

10.1186/1471-2164-11-432

Bcheck: a wrapper tool for detecting RNase P RNA genes
Cited by: 24
Author(s): Dilmurat Yusuf, Manja Marz, Peter F. Stadler, Ivo L. Hofacker
Software Mentions: 4
Published: about 16 years ago

10.3389/frai.2021.754641

Deep Learning of Histopathology Images at the Single Cell Level
Cited by: 19
Author(s): Kyubum Lee, John H. Lockhart, Mengyu Xie, Ritu Chaudhary, Robbert J.C. Slebos, Elsa R. Flores, Christine H. Chung, Aik Choon Tan
Software Mentions: 4
Published: almost 5 years ago

10.1038/s41598-020-71592-9

Long-term effects of western diet consumption in male and female mice
Cited by: 23
Author(s): Yu Hasegawa, Shin-Yu Chen, Lili Sheng, Prasant Kumar Jena, Karen M. Kalanetra, David A. Mills, Yu Wan, Carolyn M. Slupsky
Software Mentions: 4
Published: almost 6 years ago

10.18632/oncotarget.13025

Integrative analysis of DNA copy number, DNA methylation and gene expression in multiple myeloma reveals alterations related to relapse
Cited by: 10
Author(s): Patryk Krzemiński, Luis A. Corchete, Juan Luis Garcı́a, Lucía López-Corral, Encarnación Fermiñán, Ernesto Garcı́a, Ana A. Martín, Jesús M. Hernández-Rivas, Ramón García‐Sanz, Jesús F. San Miguel, Norma C. Gutiérrez
Software Mentions: 4
Published: almost 10 years ago

10.1186/1471-2229-11-131

From RNA-seq to large-scale genotyping - genomics resources for rye (Secale cereale L.)
Cited by: 101
Author(s): Grit Haseneyer, Thomas Schmutzer, Michael Seidel, Ruonan Zhou, Martin Mascher, C. C. Schön, Stefan Taudien, Uwe Scholz, Nils Stein, Klaus Mayer, Eva Bauer
Software Mentions: 4
Published: almost 15 years ago

10.1155/2019/1571045

A Circulating miRNA-Based Scoring System Established by WGCNA to Predict Colon Cancer
Cited by: 2
Author(s): Dashan Qin, Rui Wei, Si Liu, Shoumin Zhu, Shutian Zhang, Li Min
Software Mentions: 4
Published: over 6 years ago

10.1002/emmm.201201974

Alteration of the micro <scp>RNA</scp> network during the progression of Alzheimer's disease
Cited by: 393
Author(s): Pierre Lau, Koen Bossers, Rekin’s Janky, Evgenia Salta, Carlo Sala Frigerio, Shahar Barbash, Roy Rothman, Annerieke Sierksma, Amantha Thathiah, David Greenberg, Aikaterini S. Papadopoulou, Tilmann Achsel, Torik Ayoubi, Hermona Soreq, Joost Verhaagen, Dick F. Swaab, Stein Aerts, Bart De Strooper
Software Mentions: 4
Published: almost 13 years ago

10.26508/lsa.202000962

Muscarinic receptor M3 contributes to intestinal stem cell maintenance via EphB/ephrin-B signaling
Cited by: 7
Author(s): Toshio Takahashi, Akira Shiraishi, Jun Murata, Shin Matsubara, Satsuki Nakaoka, Shinji Kirimoto, Masatake Osawa
Software Mentions: 4
Published: about 5 years ago

10.1186/2042-5783-3-2

Beginner’s guide to comparative bacterial genome analysis using next-generation sequence data
Cited by: 109
Author(s): D.J. Edwards, Kathryn E. Holt
Software Mentions: 4
Published: over 13 years ago

10.1002/jbm4.10496

Single‐Cell <scp>RNA</scp>‐Sequencing Reveals the Breadth of Osteoblast Heterogeneity
Cited by: 11
Author(s): Hirotaka Yoshioka, Saki Okita, Masashi Nakano, Takeshi Minamizaki, Asako Nubukiyo, Yusuke Sotomaru, Edith Bonnelye, Katsuyuki Kozai, Kotaro Tanimoto, Jane E. Aubin, Yuji Yoshiko
Software Mentions: 4
Published: about 5 years ago

10.1093/iob/obab024

Increasing Viscosity Helps Explain Locomotor Control in Swimming <i>Polypterus senegalus</i>
Cited by: 7
Author(s): Keegan Lutek, Emily M. Standen
Software Mentions: 4
Published: over 5 years ago

10.1155/2014/264519

A Bioinformatics Pipeline for the Analyses of Viral Escape Dynamics and Host Immune Responses during an Infection
Cited by: 6
Author(s): Preston Leung, Rowena A. Bull, Andrew R. Lloyd, Fabio Luciani
Software Mentions: 4
Published: over 12 years ago

10.1186/gb-2013-14-12-r141

Obligate mutualism within a host drives the extreme specialization of a fig wasp genome
Cited by: 79
Author(s): Jin‐Hua Xiao, Zhen Yue, Ling-Yi Jia, Xinhua Yang, Lihua Niu, Zhuo Wang, Peng Zhang, Bao‐Fa Sun, Shunmin He, Zi Li, Tuanlin Xiong, Xintian Wen, Haifeng Gu, Bo Wang, John H. Werren, Robert W. Murphy, David A. Wheeler, Li‐Ming Niu, Guang-Chang Ma, Ting Tang, Sheng‐Nan Bian, Ningxin Wang, Caiqiong Yang, Nan Wang, Yanlong Fu, Wenzhu Li, Soojin V. Yi, Xingyu Yang, Qing Zhou, Changxin Lu, Chunyan Xu, Li He, Lili Yu, Ming Chen, Yawen Zheng, Shaowei Wang, Shuang Zhao, Yanhong Li, Yangyang Yu, Xiaoju Qian, Yuchen Cai, Lianle Bian, Shu Zhang, Junyi Wang, Ye Yin, Hui Xiao, Guan-Hong Wang, Hui Yu, Wei-Jian Wu, James M. Cook, Jun Wang, Dawei Huang
Software Mentions: 4
Published: over 13 years ago

10.3389/fpsyg.2020.00369

The Effect of Probabilistic Context on Implicit Temporal Expectations in Down Syndrome
Cited by: 9
Author(s): Giovanni Mento, Gaia Scerif, Umberto Granziol, Malida Franzoi, Silvia Lanfranchi
Software Mentions: 4
Published: over 6 years ago

10.1186/s13100-018-0123-6

Extensive exchange of transposable elements in the Drosophila pseudoobscura group
Cited by: 25
Author(s): Tom Hill, Andrea J. Betancourt
Software Mentions: 4
Published: about 8 years ago

10.1111/1755-0998.13210

Disagreement in <i>F</i> _ST estimators: A case study from sex chromosomes
Cited by: 11
Author(s): William J Gammerdinger, Melissa A. Toups, Beatriz Vicoso
Software Mentions: 4
Published: about 6 years ago

10.18632/aging.202228

Identification of SCARA3 with potential roles in metabolic disorders
Cited by: 7
Author(s): Hui Peng, Qi Guo, Tian Su, Ye Xiao, Changjun Li, Yan Huang, Xiang‐Hang Luo
Software Mentions: 4
Published: over 5 years ago

10.1186/s40168-018-0518-0

Bacterial microbiota protect an invasive bark beetle from a pine defensive compound
Cited by: 47
Author(s): Chihang Cheng, Jacob D. Wickham, Li Chen, Dandan Xu, Min Lü, Jianghua Sun
Software Mentions: 4
Published: about 8 years ago

10.3389/fpsyg.2017.01861

Cognitive Engagement Mediates the Relationship between Positive Life Events and Positive Emotionality
Cited by: 7
Author(s): Alexander Strobel, Kristin Anacker, Anja Strobel
Software Mentions: 4
Published: almost 9 years ago

10.1242/dmm.042713

Leptin and fractalkine: Novel subcutaneous cytokines in burn injury
Cited by: 4
Author(s): Dominic Friston, Sini Junttila, Júlia Borges Paes Lemes, Helen Laycock, Jose Vicente Torres-Pérez, Elizabeth J. Want, Attila Gyenesei, I. Nagy
Software Mentions: 4
Published: over 6 years ago

10.1186/s13059-018-1591-1

NmeCas9 is an intrinsically high-fidelity genome-editing platform
Cited by: 93
Author(s): Nadia Amrani, Xin D. Gao, Pengpeng Liu, Alireza Edraki, Aamir Mir, Raed Ibraheim, Ankit Gupta, Kyoyu Sasaki, Tong Wu, Paul D. Donohoue, Alexander Settle, Alexandra M. Lied, Kyle McGovern, Christopher R. Fuller, P. Simmons Cameron, Thomas G. Fazzio, Lihua Julie Zhu, Scot A. Wolfe, Erik J. Sontheimer
Software Mentions: 4
Published: over 7 years ago

10.1016/j.cell.2018.11.041

The Implication of Early Chromatin Changes in X Chromosome Inactivation
Cited by: 188
Author(s): J. Ż̷ylicz, Aurélie Bousard, Kristina Žumer, François Dossin, Eusra Mohammad, Simão Teixeira da Rocha, Björn Schwalb, Laurène Syx, Florent Dingli, Damarys Loew, Patrick Cramer, Edith Heard
Software Mentions: 4
Published: over 7 years ago

10.3390/cancers13030559

Type 2 Innate Lymphoid Cells Protect against Colorectal Cancer Progression and Predict Improved Patient Survival
Cited by: 29
Author(s): Qiutong Huang, Nicolas Jacquelot, Adele Preaudet, Soroor Hediyeh-Zadeh, Fernando Souza-Fonseca-Guimarães, Andrew N. J. McKenzie, Philip M. Hansbro, Melissa J. Davis, Lisa A. Mielke, Tracy L. Putoczki, Gabrielle T. Belz
Software Mentions: 4
Published: over 5 years ago

10.1002/ece3.1107

An Illumina metabarcoding pipeline for fungi
Cited by: 103
Author(s): Miklós Bálint, Philipp-André Schmidt, Rahul Sharma, Marco Thines, Imke Schmitt
Software Mentions: 4
Published: about 12 years ago

10.1093/gigascience/giaa036

Chromosome-level reference genome of the jellyfish Rhopilema esculentum
Cited by: 16
Author(s): Yunfeng Li, Lei Gao, Yongjia Pan, Meilin Tian, Yulong Li, Chongbo He, Ying Dong, Yamin Sun, Zunchun Zhou
Software Mentions: 4
Published: over 6 years ago

10.1126/sciadv.abe8215

Dynamics of sex chromosome evolution in a rapid radiation of cichlid fishes
Cited by: 28
Author(s): Athimed El Taher, Fabrizia Ronco, Michael Matschiner, Walter Salzburger, Astrid Böhne
Software Mentions: 4
Published: almost 5 years ago

10.1371/journal.pgen.1008073

Genetic determinants of gut microbiota composition and bile acid profiles in mice
Cited by: 67
Author(s): Julia H. Kemis, Vanessa Linke, Kelsey L Barrett, Frederick J. Boehm, Lindsay L. Traeger, Mark P. Keller, Mary E. Rabaglia, Kathryn L. Schueler, Donald S. Stapleton, Daniel M. Gatti, Gary A. Churchill, Daniel Amador‐Noguez, John N. Russell, Brian S. Yandell, Karl W. Broman, Joshua J. Coon, Alan D. Attie, Federico E. Rey
Software Mentions: 4
Published: almost 7 years ago

10.3389/fimmu.2021.662443

An Integrated Genomic, Proteomic, and Immunopeptidomic Approach to Discover Treatment-Induced Neoantigens
Cited by: 17
Author(s): Niclas Olsson, Marlene L Heberling, Lichao Zhang, Suchit Jhunjhunwala, Qui Phung, Sarah Lin, Veronica G. Anania, Jennie R. Lill, Joshua E. Elias
Software Mentions: 4
Published: over 5 years ago

10.3389/fimmu.2020.583013

Accurate and Efficient KIR Gene and Haplotype Inference From Genome Sequencing Reads With Novel K-mer Signatures
Cited by: 10
Author(s): David Roe, Rui Kuang
Software Mentions: 4
Published: over 5 years ago

10.3389/fneur.2020.00331

Evidence of a Recessively Inherited CCN3 Mutation as a Rare Cause of Early-Onset Parkinsonism
Cited by: 1
Author(s): Steven Bentley, Suliman Khan, Marco Öchsner, Susitha Premarathne, Zain Aslam, Javed Fowdar, Jamila Iqbal, Muhammad Naeem, Christopher Love, Stephen A. Wood, George D. Mellick, Alex M. Sykes
Software Mentions: 4
Published: about 6 years ago

10.3389/fmed.2020.00161

Whole Genome Sequencing and Spatial Analysis Identifies Recent Tuberculosis Transmission Hotspots in Ghana
Cited by: 14
Author(s): Prince Asare, Isaac Darko Otchere, Edmund Bedeley, Daniela Brites, Chloé Loiseau, Nyonuku Akosua Baddoo, Adwoa Asante-Poku, Stephen Osei-Wusu, Diana Ahu Prah, Sònia Borrell, Miriam Reinhard, Audrey Forson, Kwadwo A. Koram, Sébastien Gagneux, Dorothy Yeboah-Manu
Software Mentions: 4
Published: about 6 years ago

10.3389/fmicb.2016.01768

Life without dUTPase
Cited by: 20
Author(s): Csaba Kerepesi, J. Szabó, Veronika Papp‐Kádár, Orsolya Dobay, Dóra Szabó, Vince Grolmusz, Beáta G. Vértessy
Software Mentions: 4
Published: over 9 years ago

10.3389/fmicb.2015.00998

Meta-omic signatures of microbial metal and nitrogen cycling in marine oxygen minimum zones
Cited by: 47
Author(s): Jennifer B. Glass, Cécilia B. Kretz, Sangita Ganesh, Piyush Ranjan, Sherry L. Seston, Kristen N. Buck, William M. Landing, Peter L. Morton, James W. Moffett, Stephen J. Giovannoni, Kevin L. Vergin, Frank J. Stewart
Software Mentions: 4
Published: almost 11 years ago

10.3389/fmicb.2012.00410

The Binning of Metagenomic Contigs for Microbial Physiology of Mixed Cultures
Cited by: 173
Author(s): Marc Strous, Beate Kraft, Regina Bisdorf, Halina E. Tegetmeyer
Software Mentions: 4
Published: over 14 years ago

10.1111/1462-2920.14929

Methane oxidation and methylotroph population dynamics in groundwater mesocosms
Cited by: 17
Author(s): Olukayode Kuloyo, S. Emil Ruff, Aaron G. Cahill, Liam Connors, Jackie Zorz, Isabella Hrabě de Angelis, Michael Nightingale, Bernhard Mayer, Marc Strous
Software Mentions: 4
Published: over 6 years ago

10.3389/fcimb.2019.00271

Successional Dynamics in the Gut Microbiome Determine the Success of Clostridium difficile Infection in Adult Pig Models
Cited by: 4
Author(s): Stephanie D. Jurburg, Jan J. B. W. J. Cornelissen, Paulo de Boer, M.A. Smits, Johanna M.J. Rebel
Software Mentions: 4
Published: about 7 years ago

10.3390/cells10071821

Plasma Metabolome Profiling Identifies Metabolic Subtypes of Pancreatic Ductal Adenocarcinoma
Cited by: 8
Author(s): Ujjwal Mukund Mahajan, Ahmed Alnatsha, Qi Li, Bettina Oehrle, Florian Weiß, Matthias Sendler, Marius Distler, Waldemar Uhl, Tim Fahlbusch, Elisabetta Goni, Georg Beyer, Ansgar M. Chromik, M. Bahra, Fritz Klein, Christian Pilarsky, Robert Grützmann, Markus M. Lerch, Kirsten Lauber, Nicole Christiansen, Beate Kamlage, Ivonne Regel, Julia Mayerle
Software Mentions: 4
Published: about 5 years ago

10.3389/fmicb.2020.01363

Microbial Communities Associated With Long-Term Tillage and Fertility Treatments in a Corn-Soybean Cropping System
Cited by: 47
Author(s): Ali Srour, Hala A. Ammar, Arjun Subedi, Mirian F. Pimentel, Rachel L. Cook, Jason P. Bond, Ahmad M. Fakhoury
Software Mentions: 4
Published: about 6 years ago

10.3389/fmicb.2018.00251

Recovering Genomics Clusters of Secondary Metabolites from Lakes Using Genome-Resolved Metagenomics
Cited by: 27
Author(s): Rafael R. C. Cuadrat, Danny Ionescu, Alberto M. R. Dávila, Hans‐Peter Grossart
Software Mentions: 4
Published: over 8 years ago

10.3390/genes11121444

Evaluation of Single-Molecule Sequencing Technologies for Structural Variant Detection in Two Swedish Human Genomes
Cited by: 6
Author(s): Nazeefa Fatima, Anna Petri, Ulf Gyllensten, Lars Feuk, Adam Ameur
Software Mentions: 4
Published: over 5 years ago

10.1186/s13059-020-02198-7

The Tetracentron genome provides insight into the early evolution of eudicots and the formation of vessel elements
Cited by: 17
Author(s): Pingli Liu, Xi Zhang, Jian‐Feng Mao, Yan-Ming Hong, Rengang Zhang, E Yilan, Shuai Nie, Kai‐Hua Jia, Chen-Kun Jiang, Jian He, Weiwei Shen, Qizouhong He, Wenqing Zheng, Samar H. Abbas, Pawan Kumar Jewaria, Xue Tian, Changjun Liu, Xueyu Jiang, Yafang Yin, Bo Liu, Li Wang, Biao Jin, Yongpeng Ma, Zongbo Qiu, Frantǐsek Baluška, Jozef Šamaj, Xin-Qiang He, Shihui Niu, Jianbo Xie, Lei Xie, Huimin Xu, Hongzhi Kong, Song Ge, Richard A. Dixon, Yuannian Jiao, Jinxing Lin
Software Mentions: 4
Published: over 5 years ago

10.3389/fmicb.2020.593232

Simulation of Microbial Response to Accidental Diesel Spills in Basins Containing Brackish Sea Water and Sediment
Cited by: 4
Author(s): Lijuan Yan, Nan Hui, Suvi Simpanen, Laura Tudeer, Martin Romantschuk
Software Mentions: 4
Published: over 5 years ago

10.1186/s40104-020-00459-w

Eggshell and environmental bacteria contribute to the intestinal microbiota of growing chickens
Cited by: 33
Author(s): Joel J. Maki, Elizabeth Bobeck, Matthew J. Sylte, Torey Looft
Software Mentions: 4
Published: about 6 years ago

10.3390/genes11070736

Growth Trajectories in Genetic Subtypes of Prader–Willi Syndrome
Cited by: 4
Author(s): Daisy A. Shepherd, Niels Vos, Susan M Reid, David E. Godler, Angela Guzys, Margarita Moreno‐Betancur, David J. Amor
Software Mentions: 4
Published: about 6 years ago

10.3389/fphar.2020.00753

Leishmanicidal Potential of Hardwickiic Acid Isolated From Croton sylvaticus
Cited by: 16
Author(s): Justice Afrifa Crentsil, Lauve Rachel Tchokouaha Yamthé, Barbara Anibea, Emmanuel Broni, Samuel K. Kwofie, John Tetteh, Dorcas Osei‐Safo
Software Mentions: 4
Published: about 6 years ago

10.1038/s41598-020-72951-2

Urban resources limit pair coordination over offspring provisioning
Cited by: 16
Author(s): Davide Baldan, Jenny Q. Ouyang
Software Mentions: 4
Published: almost 6 years ago

10.1534/g3.116.028324

Histone H1 Limits DNA Methylation in Neurospora crassa
Cited by: 18
Author(s): Michael Seymour, Lexiang Ji, Alex M. Santos, Masayuki Kamei, Takahiko Sasaki, Evelina Y. Basenko, Robert J. Schmitz, Xiaoyu Zhang, Zachary A. Lewis
Software Mentions: 4
Published: about 10 years ago

10.3390/biom10060850

Can We Assume the Gene Expression Profile as a Proxy for Signaling Network Activity?
Cited by: 8
Author(s): Mehran Piran, Reza Karbalaei, Mehrdad Piran, Jehad Aldahdooh, Mehdi Mirzaie, Naser Ansari-Pour, Jing Tang, Mohieddin Jafari
Software Mentions: 4
Published: about 6 years ago

10.1534/genetics.118.301482

Diverse Lineages of <i>Candida albicans</i> Live on Old Oaks
Cited by: 54
Author(s): Douda Bensasson, Jo Dicks, John M. Ludwig, Christopher J. Bond, Adam Elliston, Ian N. Roberts, Stephen A. James
Software Mentions: 4
Published: over 7 years ago

10.1093/gigascience/giz110

Evaluation of computational genotyping of structural variation for clinical diagnoses
Cited by: 34
Author(s): Varuna Chander, Richard A. Gibbs, Fritz J. Sedlazeck
Software Mentions: 4
Published: almost 7 years ago

10.3390/genes10090725

A Transcriptome Analysis Identifies Biological Pathways and Candidate Genes for Feed Efficiency in DLY Pigs
Cited by: 9
Author(s): Xingwang Wang, Shaoyun Li, Jie Wu, Rongrong Ding, Jianping Quan, Enqin Zheng, Jie Yang, Zhenfang Wu
Software Mentions: 4
Published: almost 7 years ago

10.3390/genes8110329

Flanking Variation Influences Rates of Stutter in Simple Repeats
Cited by: 19
Author(s): August E. Woerner, Jonathan L. King, Bruce Budowle
Software Mentions: 4
Published: over 8 years ago

10.1038/s41396-019-0568-8

Gut microbiota structure differs between honeybees in winter and summer
Cited by: 157
Author(s): Lucie Kešnerová, Olivier Emery, Michaël Troilo, Joanito Liberti, Berra Erkoşar, Philipp Engel
Software Mentions: 4
Published: over 6 years ago

10.18632/oncotarget.27629

Bacteriome and mycobiome and bacteriome-mycobiome interactions in head and neck squamous cell carcinoma
Cited by: 22
Author(s): Elizabeth Shay, Naseer Sangwan, Roshan Padmanabhan, Scott Lundy, Brian B. Burkey, Charis Eng
Software Mentions: 4
Published: about 6 years ago

10.1534/g3.120.401306

Genotypic Characterization of the U.S. Peanut Core Collection
Cited by: 10
Author(s): Paul I. Otyama, R.S. Kulkarni, Kelly D. Chamberlin, Peggy Ozias‐Akins, Ye Chu, Lori M. Lincoln, Gregory E. MacDonald, Noelle L. Anglin, Sudhansu Dash, David J. Bertioli, David Fernández-Baca, Michelle A. Graham, Steven B. Cannon, Ethalinda K. S. Cannon
Software Mentions: 4
Published: almost 6 years ago

10.3389/fpsyg.2021.580441

Audiomotor Temporal Recalibration Modulates Decision Criterion of Self-Agency but Not Perceptual Sensitivity
Cited by: 0
Author(s): Yoshimori Sugano
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-021-90297-1

Subsoil-potassium depletion accounts for the nutrient budget in high-potassium agricultural soils
Cited by: 6
Author(s): Adrián A. Correndo, Gerardo Rubio, Fernando O. García, Ignacio A. Ciampitti
Software Mentions: 4
Published: about 5 years ago

10.1371/journal.pone.0144409

The Activation-Induced Assembly of an RNA/Protein Interactome Centered on the Splicing Factor U2AF2 Regulates Gene Expression in Human CD4 T Cells
Cited by: 14
Author(s): Thomas Whisenant, Eigen Peralta, Lauren Aarreberg, Nana Gao, Steven R. Head, Phillip Ordoukhanian, James R. Williamson, Daniel R. Salomon
Software Mentions: 4
Published: over 10 years ago

10.1371/journal.pone.0216679

Seasonal adaptations of the hypothalamo-neurohypophyseal system of the dromedary camel
Cited by: 8
Author(s): Fatma Zohra Djazouli Alim, Elena V. Romanova, Yea Ling Tay, Ahmad Yamin bin Abdul Rahman, Kok‐Gan Chan, Kar‐Wai Hong, Mark F. Rogers, Bruce R. Southey, Michael Greenwood, André Souza Mecawi, Mohammad Rais Mustafa, Nicole Mahy, Colin Campbell, José Antunes‐Rodrigues, Jonathan V. Sweedler, David Murphy, Charles C.T. Hindmarch
Software Mentions: 4
Published: about 7 years ago

10.1155/2018/3028290

Stress-Adaptive Responses Associated with High-Level Carbapenem Resistance in KPC-ProducingKlebsiella pneumoniae
Cited by: 4
Author(s): Sheila Adams‐Sapper, Adam Gayoso, Lee W. Riley
Software Mentions: 4
Published: over 8 years ago

10.3389/fnins.2016.00015

A Parcellation Based Nonparametric Algorithm for Independent Component Analysis with Application to fMRI Data
Cited by: 3
Author(s): Shanshan Li, Shaojie Chen, Yue Chen, Brian Caffo
Software Mentions: 4
Published: over 10 years ago

10.3390/s21155214

Cat and Mouse Based Optimizer: A New Nature-Inspired Optimization Algorithm
Cited by: 47
Author(s): Mohammad Dehghani, Štěpán Hubálovský, Pavel Trojovský
Software Mentions: 4
Published: about 5 years ago

10.2217/fvl-2020-0256

Epidemiologic features and clinical course of COVID-19: a retrospective analysis of 19 patients in Germany
Cited by: 1
Author(s): Sara Elgamasy, Eman El-Sayed Sakr, Mohamed Gomaa Kamel, Sherief Ghozy, Ghadeer Gamal Elsayed, Mostafa Mahmoud Fahmy, Ahmed Ghazy, Mohamed M. Ibrahim, Mostafa Ebraheem Morra
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0246367

Multi-omic modelling of inflammatory bowel disease with regularized canonical correlation analysis
Cited by: 6
Author(s): Lluís Revilla, Aida Mayorgas, A M Corraliza, Maria Carme Masamunt, Amira Metwaly, Dirk Haller, Eva Tristán, Anna Carrasco, María Esteve, Julián Panés, Elena Ricart, Juan José Lozano, Azucena Salas
Software Mentions: 4
Published: over 5 years ago

10.3758/s13428-020-01406-3

subs2vec: Word embeddings from subtitles in 55 languages
Cited by: 11
Author(s): Jeroen van Paridon, Bill Thompson
Software Mentions: 4
Published: about 6 years ago

10.1371/journal.pone.0222907

A comparison of machine learning algorithms for the surveillance of autism spectrum disorder
Cited by: 18
Author(s): Scott H. Lee, Matthew J. Maenner, Charles M. Heilig
Software Mentions: 4
Published: almost 7 years ago

10.1371/journal.pone.0229963

Supervised and unsupervised language modelling in Chest X-Ray radiological reports
Cited by: 22
Author(s): Ignat Drozdov, Daniel Forbes, Benjamin Szubert, M. Hall, C Carlin, David J Lowe
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pone.0248663

Protocol for a reproducible experimental survey on biomedical sentence similarity
Cited by: 2
Author(s): Alicia Lara-Clares, Juan J. Lastra-Díaz, Ana Garcı́a-Serrano
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0228439

FastEmbed: Predicting vulnerability exploitation possibility based on ensemble machine learning algorithm
Cited by: 39
Author(s): Yong Fang, Yongcheng Liu, Cheng Huang, Liang Liu
Software Mentions: 4
Published: over 6 years ago

10.1093/database/bax103

Baseline and extensions approach to information retrieval of complex medical data: Poznan's approach to the bioCADDIE 2016
Cited by: 5
Author(s): Artur Cieślewicz, Jakub Dutkiewicz, Czesław Jędrzejek
Software Mentions: 4
Published: over 8 years ago

10.3389/fpls.2021.660658

Substrate Type Influences the Structure of Epiphyte Communities and the Growth of Posidonia oceanica Seedlings
Cited by: 1
Author(s): Davide De Battisti, Elena Balestri, G. Pardi, Virginia Menicagli, Claudio Lardicci
Software Mentions: 4
Published: over 5 years ago

10.1186/2049-2618-2-1

Microbes in the neonatal intensive care unit resemble those found in the gut of premature infants
Cited by: 314
Author(s): Brandon Brooks, Brian Firek, Christopher S. Miller, Itai Sharon, Brian C. Thomas, Robyn Baker, Michael J. Morowitz, Jillian F. Banfield
Software Mentions: 4
Published: over 12 years ago

10.3389/fpls.2016.01651

Modeling the Morphometric Evolution of the Maize Shoot Apical Meristem
Cited by: 10
Author(s): Samuel Leiboff, Christopher K. DeAllie, Michael J. Scanlon
Software Mentions: 4
Published: almost 10 years ago

10.3389/fpls.2018.00322

Genetic and Developmental Basis for Increased Leaf Thickness in the Arabidopsis Cvi Ecotype
Cited by: 21
Author(s): Viktoriya Coneva, Daniel H. Chitwood
Software Mentions: 4
Published: over 8 years ago

10.3389/fpls.2017.00963

Recent Genetic Gains in Nitrogen Use Efficiency in Oilseed Rape
Cited by: 33
Author(s): Andreas Stahl, Mara Pfeifer, Matthias Frisch, Benjamin Wittkop, Rod J. Snowdon
Software Mentions: 4
Published: about 9 years ago

10.1371/journal.pone.0204038

Shifts in ovine cardiopulmonary microRNA expression in late gestation and the perinatal period
Cited by: 3
Author(s): Ramona Krauss, Belinda Phipson, Alicia Oshlack, Nikita Prasad-Gupta, Michael Cheung, Joseph J. Smolich, Salvatore Pepe
Software Mentions: 4
Published: almost 8 years ago

10.1371/journal.pone.0101467

Transcriptome Analysis Reveals Signature of Adaptation to Landscape Fragmentation
Cited by: 22
Author(s): Panu Somervuo, Jouni Kvist, Suvi Ikonen, Petri Auvinen, Lars Paulín, Patrik Koskinen, Liisa Holm, Minna Taipale, Anne Duplouy, Annukka Ruokolainen, Suvi Saarnio, Jukka Sirén, Jukka Kohonen, Jukka Corander, Mikko J. Frilander, Virpi Ahola, Ilkka Hanski
Software Mentions: 4
Published: about 12 years ago

10.3390/healthcare8020120

Integrated Natural Language Processing and Machine Learning Models for Standardizing Radiotherapy Structure Names
Cited by: 14
Author(s): Khajamoinuddin Syed, William C. Sleeman, Kevin Ivey, Michael P. Hagan, Jatinder Palta, Rishabh Kapoor, Preetam Ghosh
Software Mentions: 4
Published: over 6 years ago

10.1186/s13326-021-00238-0

Learning adaptive representations for entity recognition in the biomedical domain
Cited by: 1
Author(s): Ivano Lauriola, Fabio Aiolli, Alberto Lavelli, Fabio Rinaldi
Software Mentions: 4
Published: about 5 years ago

10.1038/s41597-019-0055-0

BioWordVec, improving biomedical word embeddings with subword information and MeSH
Cited by: 269
Author(s): Yijia Zhang, Qingyu Chen, Zhihao Yang, Hongfei Lin, Zhiyong Lu
Software Mentions: 4
Published: over 7 years ago

10.1371/journal.pone.0168573

Distinctive Feature of Microbial Communities and Bacterial Functional Profiles in Tricholoma matsutake Dominant Soil
Cited by: 33
Author(s): Seung‐Yoon Oh, Jonathan J. Fong, Myung Soo Park, Young Woon Lim
Software Mentions: 4
Published: over 9 years ago

10.3389/fpubh.2019.00081

Crowdbreaks: Tracking Health Trends Using Public Social Media Data and Crowdsourcing
Cited by: 41
Author(s): Martin Müller, Marcel Salathé
Software Mentions: 4
Published: over 7 years ago

10.1371/journal.pone.0104355

Copy Number Variation in Thai Population
Cited by: 25
Author(s): Bhoom Suktitipat, Chaiwat Naktang, Wuttichai Mhuantong, Tularak Thitima, Paramita Artiwet, Pasomsap Ekawat, Wallaya Jongjaroenprasert, Suthat Fuchareon, Surakameth Mahasirimongkol, Wasun Chantratita, Boonsit Yimwadsana, Varodom Charoensawan, Natini Jinawath
Software Mentions: 4
Published: about 12 years ago

10.3389/fpsyg.2018.02320

Not All Green Space Is Created Equal: Biodiversity Predicts Psychological Restorative Benefits From Urban Green Space
Cited by: 135
Author(s): E. J. Wood, Alice Harsant, Martin Dallimer, Anna Cronin de Chavez, Rosemary McEachan, Christopher Hassall
Software Mentions: 4
Published: over 7 years ago

10.3389/fonc.2018.00095

CDKN2A Copy Number Loss Is an Independent Prognostic Factor in HPV-Negative Head and Neck Squamous Cell Carcinoma
Cited by: 35
Author(s): William S. Chen, Ranjit S. Bindra, Allen Mo, Thomas J. Hayman, Zain Husain, Joseph N. Contessa, Stephen G. Gaffney, Jeffrey P. Townsend, James B. Yu
Software Mentions: 4
Published: over 8 years ago

10.1186/s12967-021-03031-w

Integrative analysis and experiments to explore angiogenesis regulators correlated with poor prognosis, immune infiltration and cancer progression in lung adenocarcinoma
Cited by: 6
Author(s): Songhua Cai, Xiaotong Guo, Chujian Huang, Youjun Deng, Ling Du, Wenyi Liu, Chenglin Yang, Hang Zhao, Kai Ma, Lixu Wang, Jié He, Zhentao Yu
Software Mentions: 4
Published: almost 5 years ago

10.3390/foods9091307

The Meaning of Emoji to Describe Food Experiences in Pre-Adolescents
Cited by: 29
Author(s): Julia Sick, Erminio Monteleone, Lapo Pierguidi, Gastón Ares, Sara Spinelli
Software Mentions: 4
Published: almost 6 years ago