10.15252/msb.20167233

A method for high‐throughput production of sequence‐verified <scp>DNA</scp> libraries and strain collections
Cited by: 36
Author(s): Justin D. Smith, Ulrich Schlecht, Weihong Xu, Sundari Suresh, Joe Horecka, Michael Proctor, Raeka S. Aiyar, Richard A. O. Bennett, Angela M. Chu, Yong Fuga Li, Kevin Roy, Ronald W. Davis, Lars M. Steinmetz, Richard W. Hyman, Sasha F. Levy, Robert P. St.Onge
Software Mentions: 4
Published: over 9 years ago

10.1371/journal.pone.0225834

Discovery of genomic variations by whole-genome resequencing of the North American Araucana chicken
Cited by: 5
Author(s): Rooksana E. Noorai, Vijay Shankar, Nowlan H. Freese, Christopher M. Gregorski, Steve Chapman
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pone.0105869

Deforestation and Benthic Indicators: How Much Vegetation Cover Is Needed to Sustain Healthy Andean Streams?
Cited by: 49
Author(s): Carlos Iñiguez–Armijos, A. Leiva, Hans‐Georg Frede, Henrietta Hampel, Lutz Breuer
Software Mentions: 4
Published: almost 12 years ago

10.7717/peerj.10146

Long-term participation in collaborative fisheries research improves angler opinions on marine protected areas
Cited by: 8
Author(s): Erica T. Mason, Allison N. Kellum, Jennifer A. Chiu, Grant T. Waltz, Samantha Murray, Dean E. Wendt, Richard M. Starr, Brice X. Semmens
Software Mentions: 4
Published: almost 6 years ago

10.1155/2014/914767

<i>Geodermatophilus poikilotrophi</i>sp. nov.: A Multitolerant Actinomycete Isolated from Dolomitic Marble
Cited by: 32
Author(s): María del Carmen Montero-Calasanz, Benjamin Hofner, Markus Göker, Manfred Rohde, Cathrin Spröer, Karima Hezbri, Maher Gtari, Peter Schümann, Hans‐Peter Klenk
Software Mentions: 4
Published: over 12 years ago

10.1371/journal.pone.0235009

Identifying hotspots of cardiometabolic outcomes based on a Bayesian approach: The example of Chile
Cited by: 3
Author(s): Gloria Aguayo, Anna Schritz, María Ruiz-Castell, Luís Villarroel, Gonzalo Valdívia, Guy Fagherazzi, Daniel R. Witte, Andrew Lawson
Software Mentions: 4
Published: about 6 years ago

10.1371/journal.pntd.0009719

Maxicircle architecture and evolutionary insights into Trypanosoma cruzi complex
Cited by: 6
Author(s): Luisa Berná, Gonzalo Greif, Sebastián Pita, Paula Faral-Tello, Florencia Díaz-Viraqué, Rita de Cássia Moreira de Souza, Gustavo Adolfo Vallejo, Fernando Álvarez-Valín, Carlos Robello
Software Mentions: 4
Published: almost 5 years ago

10.3390/ani10101874

Specialised for the Swamp, Catered for in Captivity? A Cross-Institutional Evaluation of Captive Husbandry for Two Species of Lechwe
Cited by: 1
Author(s): Paul Rose, Lewis J. Rowden
Software Mentions: 4
Published: almost 6 years ago

10.1371/journal.pone.0228687

Pre-analytical error for three point of care venous blood testing platforms in acute ambulatory settings: A mixed methods service evaluation
Cited by: 3
Author(s): Thomas R Fanshawe, Margaret Glogowska, George Edwards, P Turner, Ian Smith, Rosie Steele, Caroline Croxson, John M. Bowen, Gail Hayward
Software Mentions: 4
Published: over 6 years ago

10.3390/ani10101928

Effect of Tourist Activities on Fecal and Salivary Glucocorticoids and Immunoglobulin A in Female Captive Asian Elephants in Thailand
Cited by: 10
Author(s): Worapong Kosaruk, Janine L. Brown, Tithipong Plangsangmas, Patcharapa Towiboon, Veerasak Punyapornwithaya, Ayona Silva‐Fletcher, Chatchote Thitaram, Jaruwan Khonmee, Katie L. Edwards, Chaleamchat Somgird
Software Mentions: 4
Published: almost 6 years ago

10.1111/1365-2435.13453

Soil functional responses to drought under range‐expanding and native plant communities
Cited by: 14
Author(s): Marta Manrubia, Wim H. van der Putten, Carolin Weser, Freddy C. ten Hooven, Henk Martens, E.P. Brinkman, Stefan Geisen, Kelly S. Ramirez, G. F. Veen
Software Mentions: 4
Published: almost 7 years ago

10.1371/journal.pcbi.1008955

Computational phenotyping of brain-behavior dynamics underlying approach-avoidance conflict in major depressive disorder
Cited by: 12
Author(s): Mads Lund Pedersen, Maria Ironside, Ken‐ichi Amemori, Callie L. McGrath, Min Su Kang, Ann M. Graybiel, Diego A. Pizzagalli, Michael J. Frank
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-021-85203-8

GWAS findings improved genomic prediction accuracy of lipid profile traits: Tehran Cardiometabolic Genetic Study
Cited by: 8
Author(s): Mahdi Akbarzadeh, Saeid Rasekhi Dehkordi, Mahmoud Amiri Roudbar, Mehdi Sargolzaei, Kamran Guity, Bahareh Sedaghati-Khayat, Parisa Riahi, Fereidoun Azizi, Maryam Sadat Daneshpour
Software Mentions: 4
Published: over 5 years ago

10.1111/jth.13613

Clustering of glycoprotein VI (GPVI) dimers upon adhesion to collagen as a mechanism to regulate GPVI signaling in platelets
Cited by: 82
Author(s): Natalie S. Poulter, Alice Y. Pollitt, Dylan M. Owen, Elizabeth E. Gardiner, Robert K. Andrews, Hiroyuki Shimizu, Daisuke Ishikawa, Dominique Bihan, Richard W. Farndale, Masaaki Moroi, Steve P. Watson, Stéphanie Jung
Software Mentions: 4
Published: over 9 years ago

10.1111/jpy.13079

Foliose <i>Ulva</i> Species Show Considerable Inter‐Specific Genetic Diversity, Low Intra‐Specific Genetic Variation, and the Rare Occurrence of Inter‐Specific Hybrids in the Wild
Cited by: 20
Author(s): Antoine Fort, Marcus McHale, Kévin Cascella, Philippe Potin, Björn Usadel, Michael D. Guiry, Ronan Sulpice
Software Mentions: 4
Published: over 5 years ago

10.3389/fgene.2018.00682

Embedding of Genes Using Cancer Gene Expression Data: Biological Relevance and Potential Application on Biomarker Discovery
Cited by: 26
Author(s): Chi Tung Choy, Chi Hang Wong, Stephen L. Chan
Software Mentions: 4
Published: over 7 years ago

10.7554/eLife.65948

Nutrient dominance governs the assembly of microbial communities in mixed nutrient environments
Cited by: 42
Author(s): Sylvie Estrela, Alicia Sánchez-Gorostiaga, Jean C. C. Vila, Álvaro Sánchez
Software Mentions: 4
Published: over 5 years ago

10.1101/2021.01.25.428049

Haploflow: Strain-resolved <i>de novo</i> assembly of viral genomes
Cited by: 3
Author(s): Adrian Fritz, Andreas Bremges, Zhi-Luo Deng, Till Robin Lesker, Jasper Götting, Tina Ganzenmüller, Alexander Sczyrba, Alexander Dilthey, Frank Klawonn, Alice C. McHardy
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0091414

Where Wolves Kill Moose: The Influence of Prey Life History Dynamics on the Landscape Ecology of Predation
Cited by: 24
Author(s): Robert A. Montgomery, John A. Vucetich, Gary J. Roloff, Joseph K. Bump, Rolf O. Peterson
Software Mentions: 4
Published: over 12 years ago

10.18632/aging.102331

Effect of age as a continuous variable on survival outcomes and treatment selection in patients with extranodal nasal-type NK/T-cell lymphoma from the China Lymphoma Collaborative Group (CLCG)
Cited by: 11
Author(s): Wei Xin Liu, Mei Shi, Hang Su, Ying Wang, Xia He, Li Xu, Zhi Yong Yuan, L. Zhang, Gang Wu, Baolin Qu, Qian Li, Xuwei Hou, Fu Quan Zhang, Yu Jing Zhang, Yuan Zhu, Jian Cao, Sheng Hui Lan, Jun Wu, Tao Wu, Shijun Zhu, S. Qi, Yong Yang, Bin Chen, Ye Xiong Li
Software Mentions: 4
Published: almost 7 years ago

10.1038/s41598-017-16438-7

Species composition and environmental adaptation of indigenous Chinese cattle
Cited by: 73
Author(s): Yahui Gao, Mathieu Gautier, Xiangdong Ding, Hao Zhang, Yachun Wang, Xi Wang, Omar Faruque, Junya Li, Shaohui Ye, Xin Gou, Jianlin Han, Johannes A. Lenstra, Yi Zhang
Software Mentions: 4
Published: over 8 years ago

10.3389/fnhum.2021.622224

Predicting Student Performance Using Machine Learning in fNIRS Data
Cited by: 10
Author(s): Amanda Yumi Ambriola Oku, João Ricardo Sato
Software Mentions: 4
Published: over 5 years ago

10.3389/fpls.2020.00765

Different Predictors Shape the Diversity Patterns of Epiphytic and Non-epiphytic Liverworts in Montane Forests of Uganda
Cited by: 3
Author(s): Karola Maul, Yu‐Mei Wei, Martin Nebel, Federico Luebert, Boon‐Chuan Ho, Dietmar Quandt, Michael Kessler
Software Mentions: 4
Published: about 6 years ago

10.7554/eLife.47891

Epimutations are associated with CHROMOMETHYLASE 3-induced de novo DNA methylation
Cited by: 54
Author(s): Jered M. Wendte, Yinwen Zhang, Lexiang Ji, Xiulin Shi, Rashmi R. Hazarika, Yadollah Shahryary, Frank Johannes, Robert J. Schmitz
Software Mentions: 4
Published: about 7 years ago

10.1186/s12859-017-1838-y

pulver: an R package for parallel ultra-rapid p-value computation for linear regression interaction terms
Cited by: 1
Author(s): Sophie Molnos, Clemens Baumbach, Simone Wahl, Martina Müller‐Nurasyid, Konstantin Strauch, Rui Wang-Sattler, Mélanie Waldenberger, Thomas Meitinger, Jerzy Adamski, Gabi Kastenmüller, Karsten Suhre, Annette Peters, Harald Grallert, Fabian J. Theis, Christian Gieger
Software Mentions: 4
Published: almost 9 years ago

10.1111/tpj.14179

Computational aspects underlying genome to phenome analysis in plants
Cited by: 47
Author(s): Anthony Bolger, Hendrik Poorter, Kathryn Dumschott, Marie E. Bolger, Daniel Arend, Sonia Osorio, Heidrun Gundlach, Klaus Mayer, Matthias Lange, Uwe Scholz, Björn Usadel
Software Mentions: 4
Published: over 7 years ago

10.1371/journal.pone.0249254

Large-scale analysis of SARS-CoV-2 spike-glycoprotein mutants demonstrates the need for continuous screening of virus isolates
Cited by: 32
Author(s): Barbara Schrörs, Pablo Riesgo-Ferreiro, Patrick Sorn, Ranganath Gudimella, Thomas Bukur, Thomas W. Rösler, Martin Löwer, Uğur Şahin
Software Mentions: 4
Published: almost 5 years ago

10.1038/s41598-018-34855-0

Safranal induces DNA double-strand breakage and ER-stress-mediated cell death in hepatocellular carcinoma cells
Cited by: 75
Author(s): Ala’a Al-Hrout, Amphun Chaiboonchoe, Basel Khraiwesh, Chandraprabha Murali, Badriya Baig, Raafat El‐Awady, Hamadeh Tarazi, Amnah Alzahmi, David R. Nelson, Yaser E. Greish, Wafaa Ramadan, Kourosh Salehi‐Ashtiani, Amr Amin
Software Mentions: 4
Published: over 7 years ago

10.1371/journal.pone.0253341

Metaplot: A new Stata module for assessing heterogeneity in a meta-analysis
Cited by: 5
Author(s): Jalal Poorolajal, Shahla Noornejad
Software Mentions: 4
Published: about 5 years ago

10.1186/s12864-020-07200-x

iCLIP analysis of RNA substrates of the archaeal exosome
Cited by: 2
Author(s): Jochen Bathke, A. Susann Gauernack, Oliver Rupp, Lennart Weber, Christian Preußer, Marcus Lechner, Oliver Roßbach, Alexander Goesmann, Elena Evguenieva‐Hackenberg, Gabriele Klug
Software Mentions: 4
Published: over 5 years ago

10.1534/g3.120.401550

Solyntus, the New Highly Contiguous Reference Genome for Potato (<i>Solanum tuberosum</i>)
Cited by: 34
Author(s): Natascha van Lieshout, Ate van der Burgt, Michiel E. de Vries, Menno ter Maat, David Eickholt, Danny Esselink, Martijn van Kaauwen, Linda Kodde, Richard G. F. Visser, P. Lindhout, Richard Finkers
Software Mentions: 4
Published: about 6 years ago

10.1371/journal.pone.0242941

Effects of transcranial magnetic stimulation over the left posterior superior temporal gyrus on picture-word interference
Cited by: 2
Author(s): Vitória Piai, Laura Nieberlein, Gesa Hartwigsen
Software Mentions: 4
Published: over 5 years ago

10.1016/j.vaccine.2016.08.015

Distribution of Bexsero® Antigen Sequence Types (BASTs) in invasive meningococcal disease isolates: Implications for immunisation
Cited by: 62
Author(s): Carina Brehony, Charlene Rodrigues, Raymond Borrow, Andrew Smith, Robert Cunney, E. Richard Moxon, Martin C. J. Maiden
Software Mentions: 4
Published: almost 10 years ago

10.1021/acs.jcim.1c00362

Data-Driven Ensemble Docking to Map Molecular Interactions of Steroid Analogs with Hepatic Organic Anion Transporting Polypeptides
Cited by: 5
Author(s): Alzbeta Tuerkova, Orsolya Ungvári, Réka Laczkó-Rigó, Erzsébet Mernyák, Gergely Szakács, Csilla Özvegy‐Laczka, Barbara Zdrazil
Software Mentions: 4
Published: about 5 years ago

10.1111/ejn.12331

<scp>GABA_A</scp>receptors can initiate the formation of functional inhibitory<scp>GABA</scp>ergic synapses
Cited by: 33
Author(s): Céline Fuchs, Karine Abitbol, Jemima J. Burden, Audrey Mercer, Laura E. Brown, Jonathan Iball, F. Anne Stephenson, Alex M. Thomson, Jasmina N. Jovanovic
Software Mentions: 4
Published: about 13 years ago

10.1038/s41598-021-85179-5

A systematic review with network meta-analysis on mono strategy of anaesthesia for preeclampsia in caesarean section
Cited by: 1
Author(s): Chao Cheng, Alan Hsi-Wen Liao, Chien‐Yu Chen, Yu-Cih Lin, Yi‐No Kang
Software Mentions: 4
Published: over 5 years ago

10.3390/v11060484

Evaluation of Sequencing Library Preparation Protocols for Viral Metagenomic Analysis from Pristine Aquifer Groundwaters
Cited by: 24
Author(s): René Kallies, Martin Hölzer, Rodolfo Brizola Toscan, Ulisses Nunes da Rocha, John C. Anders, Antonis Chatzinotas
Software Mentions: 4
Published: about 7 years ago

10.1038/s41598-018-27743-0

Effects of different management regimes on microbial biodiversity in vineyard soils
Cited by: 67
Author(s): Maximilian Hendgen, Björn Hoppe, Johanna Döring, Matthias Friedel, Randolf Kauer, Matthias Frisch, Andreas Dahl, Harald Kellner
Software Mentions: 4
Published: about 8 years ago

10.1186/s40795-019-0315-6

Relationship between ethanol consumption and TBL2 rs17145738 on LDL-C concentration in Japanese adults: a four season 3-day weighed diet record study
Cited by: 1
Author(s): Shin‐ichi Akimoto, Chiho Goto, Kiyonori Kuriki
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pone.0098372

Maximal Sum of Metabolic Exchange Fluxes Outperforms Biomass Yield as a Predictor of Growth Rate of Microorganisms
Cited by: 9
Author(s): Raphy Zarecki, Matthew Oberhardt, Keren Yizhak, Allon Wagner, Ella Shtifman Segal, Shiri Freilich, Christopher S. Henry, Uri Gophna, Eytan Ruppin
Software Mentions: 4
Published: about 12 years ago

10.1007/s11336-021-09751-8

Single- and Multiple-Group Penalized Factor Analysis: A Trust-Region Algorithm Approach with Integrated Automatic Multiple Tuning Parameter Selection
Cited by: 10
Author(s): Elena Geminiani, Giampiero Marra, Irini Moustaki
Software Mentions: 4
Published: over 5 years ago

10.7150/jca.31408

Prognostic value of non-invasive serum Cytokeratin 18 detection in gastrointestinal cancer: a meta-analysis
Cited by: 2
Author(s): Yuejuan Huang, Ling Yang, Yan Lin, Xin Chang, Haoran Wu, Ying Chen
Software Mentions: 4
Published: over 7 years ago

10.1371/journal.pone.0245222

Early Holocene Scandinavian foragers on a journey to affluence: Mesolithic fish exploitation, seasonal abundance and storage investigated through strontium isotope ratios by laser ablation (LA‐MC-ICP‐MS)
Cited by: 9
Author(s): Adam Boëthius, Mathilda Kjällquist, Melanie Kielman‐Schmitt, Torbjörn Ahlström, Lars Larsson
Software Mentions: 4
Published: over 5 years ago

10.1001/jamanetworkopen.2019.16097

Association Between Physician Depressive Symptoms and Medical Errors
Cited by: 79
Author(s): Karina Pereira-Lima, Douglas A. Mata, Sônia Regina Loureiro, José Alexandre S Crippa, Lívia Maria Bolsoni, Srijan Sen
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pone.0102495

Loss of Sirt1 Function Improves Intestinal Anti-Bacterial Defense and Protects from Colitis-Induced Colorectal Cancer
Cited by: 44
Author(s): Giuseppe Lo Sasso, Dongryeol Ryu, Laurent Mouchiroud, Samodha C. Fernando, Christopher L. Anderson, Elena Katsyuba, Alessandra Piersigilli, Michael O. Hottiger, Kristina Schoonjans, Johan Auwerx
Software Mentions: 4
Published: about 12 years ago

10.3390/insects11080532

Plant-Derived Insecticides Under Meta-Analyses: Status, Biases, and Knowledge Gaps
Cited by: 20
Author(s): Leonardo Morais Turchen, Lírio Cosme, Raul Narciso C. Guedes
Software Mentions: 4
Published: almost 6 years ago

10.5334/jcr.174

Brain Microdialysate Monoamines in Relation to Circadian Rhythms, Sleep, and Sleep Deprivation – a Systematic Review, Network Meta-analysis, and New Primary Data
Cited by: 32
Author(s): Julia M. L. Menon, Christ Nolten, E. J. Marijke Achterberg, R Joosten, Maurice Demattéis, Matthijs G.P. Feenstra, W. H. Pim Drinkenburg, Cathalijn Leenaars
Software Mentions: 4
Published: over 7 years ago

10.1186/1471-2105-12-468

openBIS: a flexible framework for managing and analyzing complex data in biology research
Cited by: 105
Author(s): Angela Bauch, Izabela Adamczyk, Piotr Buczek, Franz-Josef Elmer, Kaloyan Enimanev, Pawel Glyzewski, Manuel Kohler, Tomasz Pylak, Andreas Quandt, Chandrasekhar Ramakrishnan, Christian Beisel, Lars Malmström, Ruedi Aebersold, Bernd Rinn
Software Mentions: 4
Published: over 14 years ago

10.1038/s41598-019-39450-5

Forecasting the response to global warming in a heat-sensitive species
Cited by: 32
Author(s): Francesca Brivio, Milena Zurmühl, Stefano Grignolio, Jost von Hardenberg, Marco Apollonio, Simone Ciuti
Software Mentions: 4
Published: over 7 years ago

10.1371/journal.pone.0045084

A Peak-Clustering Method for MEG Group Analysis to Minimise Artefacts Due to Smoothness
Cited by: 5
Author(s): Jessica R. Gilbert, Laura Shapiro, Gareth R. Barnes
Software Mentions: 4
Published: almost 14 years ago

10.3390/genes12070971

Direct Measurement of B Lymphocyte Gene Expression Biomarkers in Peripheral Blood Transcriptomics Enables Early Prediction of Vaccine Seroconversion
Cited by: 2
Author(s): Dan Huang, Alex Y. N. Liu, Kwong-Sak Leung, Nelson L.S. Tang
Software Mentions: 4
Published: about 5 years ago

10.1371/journal.pone.0245064

Racial and geographic variation in effects of maternal education and neighborhood-level measures of socioeconomic status on gestational age at birth: Findings from the ECHO cohorts
Cited by: 19
Author(s): Anne L. Dunlop, Alicynne Glazier Essalmi, Lyndsay Alvalos, Carrie V. Breton, Carlos A. Camargo, Whitney Cowell, Dana Dabelea, Stephen R. Dager, Cristiane S. Duarte, Amy J. Elliott, Raina N. Fichorova, James E. Gern, Monique M. Hedderson, Elizabeth Hom Thepaksorn, Kathi Huddleston, Margaret R. Karagas, Ken Kleinman, Leslie D. Leve, Ximin Li, Yijun Li, Augusto A. Litonjua, Yunin Ludena-Rodriguez, Juliette C. Madan, Julio Mateus Nino, Cynthia McEvoy, Thomas G. O’Connor, Amy Padula, Nigel Paneth, Frederica P. Perera, Sheela Sathyanarayana, Rebecca J. Schmidt, Robert T. Schultz, Jessica Snowden, Joseph B. Stanford, Leonardo Trasande, Heather E. Volk, William Wheaton, Rosalind J. Wright, Monica McGrath
Software Mentions: 4
Published: over 5 years ago

10.3389/fvets.2020.00236

Why the “Visitor Effect” Is Complicated. Unraveling Individual Animal, Visitor Number, and Climatic Influences on Behavior, Space Use and Interactions With Keepers—A Case Study on Captive Hornbills
Cited by: 28
Author(s): Paul Rose, Jake Scales, James Edward Brereton
Software Mentions: 4
Published: over 6 years ago

10.2196/mhealth.7820

Well-Being Tracking via Smartphone-Measured Activity and Sleep: Cohort Study
Cited by: 38
Author(s): Orianna DeMasi, Sidney Feygin, Aluma Dembo, Adrián Aguilera, Benjamin Recht
Software Mentions: 4
Published: almost 9 years ago

10.1128/AEM.02343-19

Reintroducing mothur: 10 Years Later
Cited by: 132
Author(s): Patrick D. Schloss
Software Mentions: 4
Published: over 6 years ago

10.3390/jcm7120503

Effects of Exercise on the Resting Heart Rate: A Systematic Review and Meta-Analysis of Interventional Studies
Cited by: 103
Author(s): Anne K. Reimers, Guido Knapp, C. D. Reimers
Software Mentions: 4
Published: over 7 years ago

10.1186/s40834-019-0095-z

Factors associated with long-acting family planning service utilization in Ethiopia: a systematic review and meta-analysis
Cited by: 14
Author(s): Tamirat Tesfaye Dasa, Teshager Worku Kassie, Elias Bekele Wakwoya, Henna Umer Kelel
Software Mentions: 4
Published: almost 7 years ago

10.1111/cns.13396

Effect of intra‐ and inter‐tumoral heterogeneity on molecular characteristics of primary IDH‐wild type glioblastoma revealed by single‐cell analysis
Cited by: 22
Author(s): Zujian Xiong, Qi Yang, Xuejun Li
Software Mentions: 4
Published: about 6 years ago

10.1093/gerona/glz023

The Effects of Graded Levels of Calorie Restriction: XIV. Global Metabolomics Screen Reveals Brown Adipose Tissue Changes in Amino Acids, Catecholamines, and Antioxidants After Short-Term Restriction in C57BL/6 Mice
Cited by: 14
Author(s): Cara L Green, Sharon E. Mitchell, Davina Derous, Yingchun Wang, Luonan Chen, Jing–Dong Jackie Han, Daniel Promislow, David Lusseau, Alex Douglas, John R. Speakman
Software Mentions: 4
Published: over 7 years ago

10.1371/journal.pgen.1007819

The complex architecture and epigenomic impact of plant T-DNA insertions
Cited by: 98
Author(s): Florian Jupe, Angeline Rivkin, Todd P. Michael, Mark Zander, S. Timothy Motley, Justin P. Sandoval, R. Keith Slotkin, Huaming Chen, Rosa Castanon, Joseph R. Nery, Joseph R. Ecker
Software Mentions: 4
Published: over 7 years ago

10.1186/s40164-021-00215-4

Tumor mutation burden estimated by a 69-gene-panel is associated with overall survival in patients with diffuse large B-cell lymphoma
Cited by: 17
Author(s): Cunte Chen, Sichu Liu, Xingshan Jiang, Ling Huang, Feili Chen, Xiaorong Wei, Hanguo Guo, Yang Shao, Yangqiu Li, Wenyu Li
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pcbi.1008284

Dissecting the regulatory roles of ORM proteins in the sphingolipid pathway of plants
Cited by: 5
Author(s): Adil Alsiyabi, Ariadna González-Solís, Edgar B. Cahoon, Rajib Saha
Software Mentions: 4
Published: over 5 years ago

10.3390/v11121132

Rapid, Unbiased PRRSV Strain Detection Using MinION Direct RNA Sequencing and Bioinformatics Tools
Cited by: 22
Author(s): Shaoyuan Tan, Cheryl M.T. Dvorak, Michael P. Murtaugh
Software Mentions: 4
Published: over 6 years ago

10.1038/s41598-021-91807-x

Amino acid-enriched plant-based RUTF treatment was not inferior to peanut-milk RUTF treatment in restoring plasma amino acid levels among patients with oedematous or non-oedematous malnutrition
Cited by: 3
Author(s): Wataru Sato, Chie Furuta, Peter Akomo, Paluku Bahwere, Steve Collins, Kate Sadler, Chrissy Banda, Elizabeth Maganga, Sylvester Kathumba, Hitoshi Murakami
Software Mentions: 4
Published: about 5 years ago

10.3389/fgene.2021.649208

TRIB3 Promotes the Malignant Progression of Bladder Cancer: An Integrated Analysis of Bioinformatics and in vitro Experiments
Cited by: 4
Author(s): Jieping Yang, Jiaxing Lin, Jing An, Yunan Zhao, Siyang Jing, Meng Yu, Yuyan Zhu, Yang Yao
Software Mentions: 4
Published: over 5 years ago

10.1080/23311908.2018.1424680

Brain’s functional network clustering coefficient changes in response to instruction (RTI) in students with and without reading disabilities: Multi-leveled reading brain’s RTI
Cited by: 7
Author(s): Todd L. Richards, Virginia W. Berninger, Kevin Yagle, Robert D. Abbott, Dan Peterson
Software Mentions: 4
Published: over 8 years ago

10.3389/fphar.2019.01101

Impact and Beneficial Critical Points of Clinical Outcome in Corticosteroid Management of Adult Patients With Sepsis: Meta-Analysis and GRADE Assessment
Cited by: 5
Author(s): Lu-Lu Lin, Hao Gu, Jie Luo, Long Wang, Zhang Chao, Yu‐Ming Niu, Hong-Xia Zuo
Software Mentions: 4
Published: almost 7 years ago

10.1186/s12859-017-1849-8

MetaComp: comprehensive analysis software for comparative meta-omics including comparative metagenomics
Cited by: 11
Author(s): Peng Zhai, Longshu Yang, Xiao Guo, Zhe Wang, Jiangtao Guo, Xiaoqi Wang, Huaiqiu Zhu
Software Mentions: 4
Published: almost 9 years ago

10.3390/ijerph18041754

Comparing the Efficacy of Multidisciplinary Assessment and Treatment, or Acceptance and Commitment Therapy, with Treatment as Usual on Health Outcomes in Women on Long-Term Sick Leave—A Randomised Controlled Trial
Cited by: 1
Author(s): Anna Finnes, Ingrid Anderzén, Ronnie Pingel, JoAnne Dahl, Linnea Molin, Per Lytsy
Software Mentions: 4
Published: over 5 years ago

10.3389/fimmu.2018.02689

Analysis of a Large Standardized Food Challenge Data Set to Determine Predictors of Positive Outcome Across Multiple Allergens
Cited by: 18
Author(s): Sayantani Sindher, Andrew J. Long, Natasha Purington, Madeleine Chollet, Sara C. Slatkin, Sandra Andorf, Dana Tupa, Divya Kumar, Margaret Woch, Katherine O'Laughlin, Amal Assa’ad, Jacqueline A. Pongracic, Jonathan M. Spergel, Jonathan S. Tam, Stephen A. Tilles, Julie Wang, Stephen J. Galli, R. Sharon Chinthrajah
Software Mentions: 4
Published: over 7 years ago

10.1038/s41598-021-83212-1

A novel Python module for statistical analysis of turbulence (P-SAT) in geophysical flows
Cited by: 1
Author(s): Mayank Agarwal, Vishal Deshpande, David Katoshevski, Bimlesh Kumar
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0241253

CaBagE: A Cas9-based Background Elimination strategy for targeted, long-read DNA sequencing
Cited by: 16
Author(s): Amelia D. Wallace, Thomas A Sasani, Jordan Swanier, Brooke L. Gates, Jeff Greenland, Brent S. Pedersen, Katherine E. Varley, Aaron R. Quinlan
Software Mentions: 4
Published: over 5 years ago

10.3389/fpsyg.2017.02119

Measuring Prosocial Tendencies in Germany: Sources of Validity and Reliablity of the Revised Prosocial Tendency Measure
Cited by: 26
Author(s): Johannes Rodrigues, Natalie Ulrich, Patrick Mussel, Gustavo Carlo, Johannes Hewig
Software Mentions: 4
Published: over 8 years ago

10.3390/pathogens10020243

Non-Invasive Molecular Survey of Sarcoptic Mange in Wildlife: Diagnostic Performance in Wolf Faecal Samples Evaluated by Multi-Event Capture–Recapture Models
Cited by: 4
Author(s): J. Rousseau, Mónia Nakamura, Helena Rio-Maior, Francisco Álvares, Rémi Choquet, Luís Madeira de Carvalho, Raquel Godinho, Nuno Santos
Software Mentions: 4
Published: over 5 years ago

10.3390/plants9101355

Next Generation Sequencing Based Forward Genetic Approaches for Identification and Mapping of Causal Mutations in Crop Plants: A Comprehensive Review
Cited by: 36
Author(s): Parmeshwar K. Sahu, Richa Sao, Suvendu Mondal, Gautam Vishwakarma, Sudhir Kumar Gupta, Vinay Kumar, Sudhir Singh, Deepak Sharma, Bikram Das
Software Mentions: 4
Published: almost 6 years ago

10.3389/fpls.2018.00005

Abiotic Stresses Modulate Landscape of Poplar Transcriptome via Alternative Splicing, Differential Intron Retention, and Isoform Ratio Switching
Cited by: 84
Author(s): Sergei A. Filichkin, Michael Hamilton, Palitha Dharmawardhana, Sunil Kumar Singh, Christopher Sullivan, Asa Ben‐Hur, Anireddy S. N. Reddy, Pankaj Jaiswal
Software Mentions: 4
Published: over 8 years ago

10.1186/1752-0509-7-93

JunD/AP1 regulatory network analysis during macrophage activation in a rat model of crescentic glomerulonephritis
Cited by: 17
Author(s): Prashant K. Srivastava, Richard Hull, Jacques Behmoaras, Enrico Petretto, Timothy J. Aitman
Software Mentions: 4
Published: almost 13 years ago

10.3390/jcm9061756

Return to Sport Activity in the Elderly Patients after Unicompartmental Knee Arthroplasty: A Systematic Review and Meta-Analysis
Cited by: 6
Author(s): Rocco Papalia, Biagio Zampogna, Guglielmo Torre, Lorenzo Alirio Diaz Balzani, Sebastiano Vasta, Giuseppe Francesco Papalia, Antonio De Vincentis, Vincenzo Denaro
Software Mentions: 4
Published: about 6 years ago

10.1098/rspb.2018.0744

Interference competition pressure predicts the number of avian predators that shifted their timing of activity
Cited by: 5
Author(s): Yifan Pei, Mihai Vâlcu, Bart Kempenaers
Software Mentions: 4
Published: about 8 years ago

10.1038/s41598-019-48863-1

Differential Impacts of Yeasts on Feeding Behavior and Development in Larval Drosophila suzukii (Diptera:Drosophilidae)
Cited by: 33
Author(s): Margaret T. Lewis, Kelly A. Hamby
Software Mentions: 4
Published: almost 7 years ago

10.3389/fphar.2021.634047

Discovering Potential RNA Dependent RNA Polymerase Inhibitors as Prospective Drugs Against COVID-19: An in silico Approach
Cited by: 16
Author(s): Satabdi Saha, Rajat Nandi, Poonam Vishwakarma, Amresh Prakash, Diwakar Kumar
Software Mentions: 4
Published: over 5 years ago

10.7554/eLife.44454

Correlated evolution between repertoire size and song plasticity predicts that sexual selection on song promotes open-ended learning
Cited by: 26
Author(s): Cristina M. Robinson, Kate T. Snyder, Nicole Creanza
Software Mentions: 4
Published: almost 7 years ago

10.1371/journal.pmed.1002476

Life course socioeconomic position, alcohol drinking patterns in midlife, and cardiovascular mortality: Analysis of Norwegian population-based health surveys
Cited by: 29
Author(s): Eirik Degerud, Inger Ariansen, Eivind Ystrøm, Sidsel Graff-Iversen, Gudrun Høiseth, Jörg Mørland, George Davey Smith, Øyvind Næss
Software Mentions: 4
Published: over 8 years ago

10.3390/ijerph18010030

Crop Diversity at the Landscape Level Affects the Composition and Structure of the Vegetation-Dwelling Arthropod Communities in Naked Oat (Avena Chinensis) Fields
Cited by: 7
Author(s): Huan Zhao, Jiahuan Li, Lizhu Guo, Kun Wang
Software Mentions: 4
Published: over 5 years ago

10.7717/peerj.10284

Trait differences among discrete morphs of a color polymorphic lizard,<i>Podarcis erhardii</i>
Cited by: 12
Author(s): Kinsey M. Brock, Simon Baeckens, Colin M. Donihue, José Martı́n, Panayiotis Pafilis, Danielle L. Edwards
Software Mentions: 4
Published: almost 6 years ago

10.1371/journal.pone.0101239

Visualizing Molecular Profiles of Glioblastoma with GBM-BioDP
Cited by: 49
Author(s): Orieta Celiku, Seth Johnson, Shuping Zhao, Kevin Camphausen, Uma Shankavaram
Software Mentions: 4
Published: about 12 years ago

10.1371/journal.pone.0227189

Quantifying tourism booms and the increasing footprint in the Arctic with social media data
Cited by: 25
Author(s): Claire A. Runge, Rémi M. Daigle, Vera Helene Hausner
Software Mentions: 4
Published: over 6 years ago

10.18632/oncotarget.22610

Lymph node ratio determines the benefit of adjuvant radiotherapy in pathologically 3 or less lymph node-positive prostate cancer after radical prostatectomy: a population-based analysis with propensity-score matching
Cited by: 12
Author(s): Yi Jun Kim, Choong Eui Song, Keun Yong Eom, In Ah Kim, Jae Sung Kim
Software Mentions: 4
Published: over 8 years ago

10.3390/vaccines5040037

Elucidating the Role of Host Long Non-Coding RNA during Viral Infection: Challenges and Paths Forward
Cited by: 8
Author(s): David J. Lemler, Hayden Brochu, Fang Yang, Erin Harrell, Xinxia Peng
Software Mentions: 4
Published: almost 9 years ago

10.3390/ijms22010261

Transcriptomic Changes of Murine Visceral Fat Exposed to Intermittent Hypoxia at Single Cell Resolution
Cited by: 3
Author(s): Abdelnaby Khalyfa, Wesley C. Warren, Jorge Andrade, Christopher A. Bottoms, Edward S. Rice, Rene Cortese, Leila Kheirandish‐Gozal, David Gozal
Software Mentions: 4
Published: over 5 years ago

10.1186/1471-2148-14-29

A phylogeny for the pomatiopsidae (Gastropoda: Rissooidea): a resource for taxonomic, parasitological and biodiversity studies
Cited by: 19
Author(s): Liang Liu, Guan-Nan Huo, Hong-Bin He, Ben-jiang Zhou, Stephen W. Attwood
Software Mentions: 4
Published: over 12 years ago

10.1007/s00442-018-4273-5

Landscape-level bird loss increases the prevalence of honeydew-producing insects and non-native ants
Cited by: 7
Author(s): Micah G. Freedman, Ross H. Miller, Haldre S. Rogers
Software Mentions: 4
Published: almost 8 years ago

10.1371/journal.pone.0032453

Astrocyte-Specific Expression Patterns Associated with the PDGF-Induced Glioma Microenvironment
Cited by: 66
Author(s): Amanda Katz, Nduka Amankulor, Kenneth L. Pitter, Karim Y. Helmy, Massimo Squatrito, Eric C. Holland
Software Mentions: 4
Published: over 14 years ago

10.3389/fgene.2019.00439

Whole-Exome Sequencing Identifies Somatic Mutations Associated With Mortality in Metastatic Clear Cell Kidney Carcinoma
Cited by: 17
Author(s): Alejandro Mendoza-Álvarez, Beatriz Guillén‐Guío, Adrian Baez‐Ortega, Carolina Hernandez-Perez, Sita Lakhwani-Lakhwani, María-del-Carmen Maeso, José M. Lorenzo-Salazar, Manuel Morales, Carlos Flores
Software Mentions: 4
Published: about 7 years ago

10.14283/jpad.2020.44

PREDICTING AMYLOID BURDEN TO ACCELERATE RECRUITMENT OF SECONDARY PREVENTION CLINICAL TRIALS
Cited by: 19
Author(s): Oliver Langford, Rema Raman, Reisa A. Sperling, Jeffrey L. Cummings, Chung-Kai Sun, Gustavo Jimenez‐Maggiora, Paul S. Aisen, Michael C. Donohue
Software Mentions: 4
Published: over 6 years ago

10.1007/s00442-019-04436-7

The paradox of nest reuse: early breeding benefits reproduction, but nest reuse increases nest predation risk
Cited by: 10
Author(s): Andreas Otterbeck, Vidar Selås, Jan Tøttrup Nielsen, Éric Roualet, Andreas Lindén
Software Mentions: 4
Published: about 7 years ago

10.1007/s11060-017-2649-8

Local alkylating chemotherapy applied immediately after 5-ALA guided resection of glioblastoma does not provide additional benefit
Cited by: 20
Author(s): William Sage, Mathew R. Guilfoyle, Catriona Luney, Adam M. H. Young, Rohitashwa Sinha, Donatella Sgubin, Joseph H. McAbee, Roy Ma, Sarah Jefferies, R. Jena, Frances Harris, Kieren Allinson, Tomasz Matys, Wendi Qian, Thomas Santarius, Stephen J. Price, Colin Watts
Software Mentions: 4
Published: over 8 years ago

10.1093/jxb/ery147

Genomic comparison of two independent seagrass lineages reveals habitat-driven convergent evolution
Cited by: 24
Author(s): HueyTyng Lee, Agnieszka A. Golicz, Philipp E. Bayer, Anita A. Severn‐Ellis, Chon‐Kit Kenneth Chan, Jacqueline Batley, Gary A. Kendrick, David Edwards
Software Mentions: 4
Published: over 8 years ago

10.1038/s41598-020-72154-9

Changes in grassland management and linear infrastructures associated to the decline of an endangered bird population
Cited by: 8
Author(s): Ana Teresa Marques, Francisco Moreira, Rita Alcazar, Ana Delgado, Carlos Godinho, Hugo L. Sampaio, Pedro Rocha, Nuno Sequeira, Jorge M. Palmeirim, Joao Silva
Software Mentions: 4
Published: almost 6 years ago

10.3389/fpsyg.2021.660750

Teaching the Teachers About Language Support Strategies: Effects on Young Children's Language Development
Cited by: 5
Author(s): Katharina Voltmer, Oliver Hormann, Marcus Pietsch, Claudia Maehler, Maria von Salisch
Software Mentions: 4
Published: over 5 years ago