Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/s12864-015-1308-8

https://doi.org/10.1186/s12864-015-1308-8

A comprehensive evaluation of ensembl, RefSeq, and UCSC annotations in the context of RNA-seq read mapping and gene quantification

Cited by: 109
Author(s): Shanrong Zhao, Baohong Zhang
Published: over 9 years ago

Software Mentions 4

bioconductor: ArrayExpress
Access the ArrayExpress Collection at EMBL-EBI Biostudies and build Bioconductor data structures: ExpressionSet, AffyBatch, NChannelSet
Papers that mentioned: 1,962
cran: STAR
Spike Train Analysis with R
Papers that mentioned: 5,759
pypi: ensembl
Ensembl REST API Client
Papers that mentioned: 212
pypi: TopHat
TopHat Platform
Papers that mentioned: 5,017