Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/s13073-021-00933-8

https://doi.org/10.1186/s13073-021-00933-8

Single-nucleus transcriptome analysis of human brain immune response in patients with severe COVID-19

Cited by: 71
Author(s): John F. Fullard, Hao-Chih Lee, Georgios Voloudakis, Shengbao Suo, Behnam Javidfar, Zhiping Shao, Cyril J. Peter, Wen Zhang, Shan Jiang, André Corvelo, Heather Wargnier, Emma Woodoff-Leith, Dushyant P. Purohit, Sadhna Ahuja, Nadejda M. Tsankova, Nathalie Jetté, Gabriel E. Hoffman, Schahram Akbarian, Mary Fowkes, John F. Crary, Guo‐Cheng Yuan, Panos Roussos
Published: over 3 years ago

Software Mentions 4

bioconductor: AUCell
AUCell: Analysis of 'gene set' activity in single-cell RNA-seq data (e.g. identify cells with specific gene signatures)
Papers that mentioned: 45
bioconductor: tradeSeq
trajectory-based differential expression analysis for sequencing data
Papers that mentioned: 6
cran: Seurat
Tools for Single Cell Genomics
Papers that mentioned: 1,512
pypi: Harmony
Harmony Programming Language
Papers that mentioned: 504