Projects: bioconductor: tradeSeq
https://packages.ecosyste.ms/registries/bioconductor.org/packages/tradeSeq
trajectory-based differential expression analysis for sequencing data
1 version
Latest release: almost 2 years ago
Enhanced Analysis
Educational Contributors:
[email protected]
[email protected]
Repository Activity:
Repository Owner:
statOmics (organization)
README Analysis:
Science Score: 100/100
Starting Score: 100 points
Bonuses:
-
+8
Academic maintainer emails
1 maintainers with academic email addresses -
+40
Educational commit emails
2 contributors with educational email addresses -
+10
Science terms in README
5 scientific terms found in README -
+6
Academic links
1 academic links found in README
Very Likely Science (100)
Papers Mentioning tradeSeq 6
10.1186/s13148-021-01144-z
Whole-genome methylation analysis of testicular germ cells from cryptozoospermic men points to recurrent and functionally relevant DNA methylation changesCited by: 9
Author(s): Sara Di Persio, Elsa Leitão, Marius Wöste, Tobias Tekath, Jann‐Frederik Cremers, Martin Dugas, Xiaolin Liao, Gerd Meyer zu Hörste, Sabine Kliesch, Sandra Laurentino, Nina Neuhaus, Bernhard Horsthemke
Software Mentions: 8
Published: almost 4 years ago
10.1186/s13059-021-02341-y
PseudotimeDE: inference of differential gene expression along cell pseudotime with well-calibrated p-values from single-cell RNA sequencing dataCited by: 22
Author(s): Dongyuan Song, Jingyi Jessica Li
Software Mentions: 5
Published: about 4 years ago
10.1186/s13073-021-00933-8
Single-nucleus transcriptome analysis of human brain immune response in patients with severe COVID-19Cited by: 71
Author(s): John F. Fullard, Hao-Chih Lee, Georgios Voloudakis, Shengbao Suo, Behnam Javidfar, Zhiping Shao, Cyril J. Peter, Wen Zhang, Shan Jiang, André Corvelo, Heather Wargnier, Emma Woodoff-Leith, Dushyant P. Purohit, Sadhna Ahuja, Nadejda M. Tsankova, Nathalie Jetté, Gabriel E. Hoffman, Schahram Akbarian, Mary Fowkes, John F. Crary, Guo‐Cheng Yuan, Panos Roussos
Software Mentions: 4
Published: about 4 years ago
10.1038/s41598-021-82914-w
Single-cell RNA sequencing reveals developmental heterogeneity among Plasmodium berghei sporozoitesCited by: 17
Author(s): Anthony A Ruberto, Caitlin Bourke, Nicolas Mérienne, Thomas Obadia, Rogério Amino, Ivo Müeller
Software Mentions: 3
Published: over 4 years ago
10.1371/journal.pbio.3001394
Interplay between the EMT transcription factors ZEB1 and ZEB2 regulates hematopoietic stem and progenitor cell differentiation and hematopoietic lineage fidelityCited by: 12
Author(s): Jueqiong Wang, Carlos Farkas, Aïssa Benyoucef, Catherine Carmichael, Katharina Haigh, Nicholas C. Wong, Danny Huylebroeck, Marc P. Stemmler, Simone Brabletz, Thomas Brabletz, Christian M. Nefzger, Steven Goossens, Geert Berx, José M. Polo, Jody J. Haigh
Software Mentions: 1
Published: almost 4 years ago
10.1126/sciadv.abg4755
XYZeq: Spatially resolved single-cell RNA sequencing reveals expression heterogeneity in the tumor microenvironmentCited by: 60
Author(s): Youjin Lee, Derek Bogdanoff, Yutong Wang, George C. Hartoularos, Jonathan M. Woo, Cody T. Mowery, Hunter Nisonoff, David S. Lee, Yang Sun, James Lee, Sadaf Mehdizadeh, Joshua Cantlon, Eric Shifrut, David N. Ngyuen, Theodore L. Roth, Yun S. Song, Alexander Marson, Eric D. Chow, Chun Jimmie Ye
Software Mentions: 1
Published: over 4 years ago