10.5812/ircmj.1915

Twenty Years of Experience on Stem Cell Transplantation in Iran
Cited by: 24
Author(s): Ardeshir Ghavamzadeh, Kamran Alimoghaddam, Fatemeh Ghaffari, Roshanak Derakhshandeh, Arash Jalali, M. Jahani
Software Mentions: 4
Published: over 13 years ago

10.1371/journal.pone.0221209

When drug treatments bias genetic studies: Mediation and interaction
Cited by: 4
Author(s): Amand F. Schmidt, Hiddo J.L. Heerspink, Petra Denig, Chris Finan, Rolf H.H. Groenwold
Software Mentions: 4
Published: almost 7 years ago

10.3389/fpls.2019.00009

Genomic Analysis Confirms Population Structure and Identifies Inter-Lineage Hybrids in Aegilops tauschii
Cited by: 37
Author(s): Narinder Singh, Shuangye Wu, Vijay K. Tiwari, Sunish K. Sehgal, John Raupp, Duane Wilson, Mehraj Abbasov, Bikram S. Gill, Jesse Poland
Software Mentions: 4
Published: over 7 years ago

10.1186/s12859-020-3402-4

proMAD: semiquantitative densitometric measurement of protein microarrays
Cited by: 1
Author(s): Anna Jaeschke, Hagen Eckert, Laura J. Bray
Software Mentions: 4
Published: over 6 years ago

10.1098/rsos.191024

Variation in life-history traits among <i>Daphnia</i> and its relationship to species-level responses to phosphorus limitation
Cited by: 8
Author(s): Rachel Hartnett
Software Mentions: 4
Published: about 7 years ago

10.3389/fcell.2021.710558

Construction and Validation of a Novel Immunosignature for Overall Survival in Uveal Melanoma
Cited by: 3
Author(s): Chufeng Gu, Xiaohong Gu, Yujie Wang, Zhixian Yao, Chuandi Zhou
Software Mentions: 4
Published: almost 5 years ago

10.1098/rspb.2014.0321

Two waves of colonization straddling the K–Pg boundary formed the modern reef fish fauna
Cited by: 28
Author(s): Samantha A. Price, Lars Schmitz, Christopher E. Oufiero, Ron I. Eytan, Alex Dornburg, William L. Smith, Matt Friedman, Thomas J. Near, Peter C. Wainwright
Software Mentions: 4
Published: about 12 years ago

10.3389/fpls.2021.663721

Resisting Aridification: Adaptation of Sap Conduction Performance in Moroccan Wild Olive Subspecies Distributed Over an Aridity Gradient
Cited by: 8
Author(s): Jalal Kassout, Mohammed Ater, Sarah Ivorra, Hicham Barbara, Bertrand Limier, Jérôme Ros, Vincent Girard, Laure Paradis, Jean‐Frédéric Terral
Software Mentions: 4
Published: about 5 years ago

10.1016/j.gpb.2016.06.003

Plant Proteins Are Smaller Because They Are Encoded by Fewer Exons than Animal Proteins
Cited by: 37
Author(s): Obed Ramírez-Sánchez, Paulino Pérez‐Rodríguez, Luis Delaye, Axel Tiessen
Software Mentions: 4
Published: over 9 years ago

10.1186/1742-9994-11-24

The importance of having a partner: male help releases females from time limitation during incubation in birds
Cited by: 34
Author(s): Beata Matysioková, Vladimír Remeš
Software Mentions: 4
Published: over 12 years ago

10.7717/peerj.1910

Reconstructing the demographic history of divergence between European river and brook lampreys using approximate Bayesian computations
Cited by: 25
Author(s): Quentin Rougemont, Camille Roux, Samuel Neuenschwander, Jérôme Goudet, Sophie Launey, Guillaume Evanno
Software Mentions: 4
Published: over 10 years ago

10.1186/s13059-020-02249-z

N6-methyladenosine dynamics in neurodevelopment and aging, and its potential role in Alzheimer’s disease
Cited by: 112
Author(s): Andrew M Shafik, Feiran Zhang, Zhiqin Guo, Qing Dai, Kinga Pajdzik, Yangping Li, Yunhee Kang, Bing Yao, Hao Wu, Chuan He, Emily G. Allen, Ranhui Duan, Peng Jin
Software Mentions: 4
Published: over 5 years ago

10.1093/gbe/evz178

Phylogenomics Reveals Clear Cases of Misclassification and Genus-Wide Phylogenetic Markers for Acinetobacter
Cited by: 50
Author(s): Valeria Mateo-Estrada, Lucía Graña-Miraglia, Gamaliel López-Leal, Santiago Castillo-Ramírez
Software Mentions: 4
Published: almost 7 years ago

10.1093/database/baz136

The COMPARE Data Hubs
Cited by: 23
Author(s): Clara Amid, Nima Pakseresht, Nicole C. Silvester, Suran Jayathilaka, Ole Lund, Lukasz D. Dynovski, Bálint Ármin Pataki, Dávid Visontai, Basil Britto Xavier, Blaise T. F. Alako, Ariane Belka, Jose Luis Bellod Cisneros, Matthew Cotten, George B. Haringhuizen, Peter W. Harrison, Dirk W. Höper, Sam Holt, Camilla Hundahl, Abdulrahman Hussein, Rolf Sommer Kaas, Xin Liu, Rasko Leinonen, Surbhi Malhotra-Kumar, David F. Nieuwenhuijse, Nadim Rahman, Carolina dos S. Ribeiro, Jeffrey Edward Skiby, Dennis Schmitz, József Stéger, János M. Szalai-Gindl, Martin Christen Frølund Thomsen, Simone M. Cacciò, István Csabai, Annelies Kroneman, Marion Koopmans, Frank Møller Aarestrup, Guy Cochrane
Software Mentions: 4
Published: over 7 years ago

10.1109/TPAMI.2018.2840695

DeepIGeoS: A Deep Interactive Geodesic Framework for Medical Image Segmentation
Cited by: 262
Author(s): Guotai Wang, María A. Zuluaga, Wenqi Li, Rosalind Pratt, Premal A. Patel, Michaël Aertsen, Tom Doel, Anna L. David, Jan Deprest, Sébastien Ourselin, Tom Vercauteren
Software Mentions: 4
Published: about 7 years ago

10.1093/bioinformatics/btx083

<i>nala</i>: text mining natural language mutation mentions
Cited by: 18
Author(s): Juan Miguel Cejuela, Aleksandar Bojchevski, Carsten Uhlig, Rustem Bekmukhametov, Sanjeev Kumar Karn, Shpend Mahmuti, Ashish Baghudana, Ankit Dubey, Venkata Satagopam, Burkhard Rost
Software Mentions: 4
Published: over 9 years ago

10.1155/2020/7090918

Chinese Emergency Event Recognition Using Conv-RDBiGRU Model
Cited by: 5
Author(s): Haoran Yin, Jinxuan Cao, Luzhe Cao, Guodong Wang
Software Mentions: 4
Published: about 6 years ago

10.1186/s12983-016-0151-3

Diurnal variation in corticosterone release among wild tropical forest birds
Cited by: 12
Author(s): Philipp Schwabl, Elisa Bonaccorso, Wolfgang Goymann
Software Mentions: 4
Published: over 10 years ago

10.3390/ijms20092177

Polysome Profiling of a Human Glioblastoma Reveals Intratumoral Heterogeneity
Cited by: 9
Author(s): Fernanda C. S. Lupinacci, Hellen Kuasne, Martín Roffé, Julia Avian Vassalakis, Fernanda Ferreira da Silva, Tiago G. Santos, Victor Piana de Andrade, Paulo Sanematsu, Vilma R. Martins, Sílvia Regina Rogatto, Glaucia Noeli Maroso Hajj
Software Mentions: 4
Published: over 7 years ago

10.3389/fpls.2016.01145

Evolution of Epiphytism and Fruit Traits Act Unevenly on the Diversification of the Species-Rich Genus Peperomia (Piperaceae)
Cited by: 9
Author(s): Lena Frenzke, Paul Goetghebeur, Christoph Neinhuis, Marie‐Stéphanie Samain, Stefan Wanke
Software Mentions: 4
Published: about 10 years ago

10.1098/rsos.192146

Biological and statistical interpretation of size-at-age, mixed-effects models of growth
Cited by: 8
Author(s): Simone Vincenzi, Dušan Jeseňsek, Alain J. Crivellì
Software Mentions: 4
Published: over 6 years ago

10.1126/sciadv.abf8660

FUS-ALS mutants alter FMRP phase separation equilibrium and impair protein translation
Cited by: 32
Author(s): Nicol Birsa, Agnieszka M Ule, Maria Giovanna Garone, Brian Tsang, Francesca Mattedi, P. Andrew Chong, Jack Humphrey, Seth Jarvis, Melis Pisiren, Oscar G. Wilkins, Micheal L Nosella, Anny Devoy, Cristian Bodo, Rafaela Fernandez de la Fuente, Elizabeth Fisher, Alessandro Rosa, Gabriella Viero, Julie D. Forman-Kay, Giampietro Schiavo, Pietro Fratta
Software Mentions: 4
Published: about 5 years ago

10.1371/journal.pone.0184661

MRIQC: Advancing the automatic prediction of image quality in MRI from unseen sites
Cited by: 508
Author(s): Oscar Estéban, Daniel Birman, Marie Schaer, Oluwasanmi Koyejo, Russell A. Poldrack, Krzysztof J. Gorgolewski
Software Mentions: 4
Published: almost 9 years ago

10.1186/s13024-021-00450-7

Genome-wide histone acetylation analysis reveals altered transcriptional regulation in the Parkinson’s disease brain
Cited by: 37
Author(s): Lilah Toker, Gia Tuong Thi Tran, Janani Sundaresan, Ole‐Bjørn Tysnes, Guido Alves, Kristoffer Haugarvoll, Gonzalo S. Nido, Christian Dölle, Charalampos Tzoulis
Software Mentions: 4
Published: over 5 years ago

10.7717/peerj.5738

The relationship between social rank and spatial learning in pheasants, <i>Phasianus colchicus</i>: cause or consequence?
Cited by: 15
Author(s): Ellis J. G. Langley, Jayden O. van Horik, Mark Whiteside, Christine E. Beardsworth, Joah R. Madden
Software Mentions: 4
Published: over 7 years ago

10.3389/fmicb.2019.01562

Response of Fungal Communities and Co-occurrence Network Patterns to Compost Amendment in Black Soil of Northeast China
Cited by: 38
Author(s): Wei Yang, Xuyuan Jing, Yupeng Guan, Cheng Zhai, Tao Wang, Dengyu Shi, Wanqing Sun, Song Gu
Software Mentions: 4
Published: about 7 years ago

10.3390/genes10100745

Differential Gene Expression in Articular Cartilage and Subchondral Bone of Neonatal and Adult Horses
Cited by: 4
Author(s): Ann M. Kemper, Jenny Drnevich, Molly E. McCue, Annette M. McCoy
Software Mentions: 4
Published: almost 7 years ago

10.1111/eva.13049

Using genetic relatedness to understand heterogeneous distributions of urban rat‐associated pathogens
Cited by: 9
Author(s): Kaylee A. Byers, Tom R Booker, Matthew Combs, Chelsea G. Himsworth, Jason Munshi‐South, David M. Patrick, Michael C. Whitlock
Software Mentions: 4
Published: about 6 years ago

10.1038/s41598-020-62139-z

Colorectal cancer-associated anaerobic bacteria proliferate in tumor spheroids and alter the microenvironment
Cited by: 35
Author(s): Stephen H. Kasper, Carolina Morell-Perez, Thomas P. Wyche, Theodore R. Sana, Linda A. Lieberman, Erik C. Hett
Software Mentions: 4
Published: over 6 years ago

10.1186/s12864-018-4800-0

Putative bovine topological association domains and CTCF binding motifs can reduce the search space for causative regulatory variants of complex traits
Cited by: 20
Author(s): Min Wang, Tim Hancock, Amanda J. Chamberlain, Christy J. Vander Jagt, J.E. Pryce, Benjamin G. Cocks, Michael E. Goddard, Ben J. Hayes
Software Mentions: 4
Published: about 8 years ago

10.1371/journal.pone.0241964

Motivations and fears driving participation in collaborative research infrastructure for animal tracking
Cited by: 2
Author(s): Tara L. Crewe, Dave Kendal, Hamish A. Campbell
Software Mentions: 4
Published: over 5 years ago

10.1098/rspb.2014.2934

The forgotten flies: the importance of non-syrphid Diptera as pollinators
Cited by: 156
Author(s): Katherine A. Orford, Ian P. Vaughan, Jane Memmott
Software Mentions: 4
Published: over 11 years ago

10.3390/ijms21238898

MicroRNA Profiling in Oesophageal Adenocarcinoma Cell Lines and Patient Serum Samples Reveals a Role for miR-451a in Radiation Resistance
Cited by: 8
Author(s): Frederike Butz, Ann-Kathrin Eichelmann, George C. Mayne, Tingting Wang, Isabell Bastian, Karen Chiam, Shashikanth Marri, Pamela J. Sykes, Bas P. L. Wijnhoven, Eelke Toxopeus, Michael Michael, Christos S. Karapetis, Richard Hummel, David I. Watson, Damian J. Hussey
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-020-69078-9

Global, regional, and country seroprevalence of Toxoplasma gondii in pregnant women: a systematic review, modelling and meta-analysis
Cited by: 75
Author(s): Jean Joël Bigna, Joël Noutakdie Tochie, Dahlia Noëlle Tounouga, Anne Olive Bekolo, Nadia S. Ymele, Emilie Lettitia Youda, Paule Sandra D. Sime, Jobert Richie Nansseu
Software Mentions: 4
Published: about 6 years ago

10.1186/s12983-018-0255-z

Raven food calls indicate sender’s age and sex
Cited by: 10
Author(s): Markus Boeckle, Georgine Szipl, Thomas Bugnyar
Software Mentions: 4
Published: over 8 years ago

10.1038/s41597-020-00713-w

Genome-wide identification of accessible chromatin regions in bumblebee by ATAC-seq
Cited by: 2
Author(s): Xiaomeng Zhao, Long Su, Weilin Xu, Sarah Schaack, Cheng Sun
Software Mentions: 4
Published: almost 6 years ago

10.3390/ani10122271

Heritability of Teat Condition in Italian Holstein Friesian and Its Relationship with Milk Production and Somatic Cell Score
Cited by: 3
Author(s): Francesco Tiezzi, A Maisano, S. Chessa, M. Luini, Stefano Biffani
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0238124

Elderly patients with cancer admitted to intensive care unit: A multicenter study in a middle-income country
Cited by: 0
Author(s): Antônio Paulo Nassar, Mariane da Silva Trevisani, Bárbara Beltrame Bettim, Fernando G. Zampieri, José Albani Carvalho, Amílton Silva, Flávio Geraldo Rezende Freitas, José Roberto Aparecido dos Santos Pinto, Edson Romano, Sílvia Regina Ramos, Guilherme Brenande Alves Faria, Ulysses V. Andrade e Silva, Robson Correa Santos, Edmundo de Oliveira Tommasi, Ana Paula Pierre de Moraes, Bruno Azevedo da Cruz, Fernando A. Bozza, Pedro Caruso, Jorge I. Salluh, Márcio Soares
Software Mentions: 4
Published: almost 6 years ago

10.1371/journal.pone.0250338

Die-off of plant pathogenic bacteria in tile drainage and anoxic water from a managed aquifer recharge site
Cited by: 5
Author(s): Carina Eisfeld, J.M. van der Wolf, Boris M. van Breukelen, Gertjan Medema, J. Velstra, Jack Schijven
Software Mentions: 4
Published: over 5 years ago

10.3389/fgene.2020.618478

ATACgraph: Profiling Genome-Wide Chromatin Accessibility From ATAC-seq
Cited by: 7
Author(s): Rita Jui-Hsien Lu, Yen-Ting Liu, Chih-Wei Huang, Ming‐Ren Yen, Chung‐Yen Lin, Pao‐Yang Chen
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0014782

Genome-Wide Footprints of Pig Domestication and Selection Revealed through Massive Parallel Sequencing of Pooled DNA
Cited by: 122
Author(s): Andreia J. Amaral, Luca Ferretti, Hendrik‐Jan Megens, R.P.M.A. Crooijmans, Haisheng Nie, Sebastián E. Ramos-Onsins, Miguel Pérez‐Enciso, Lawrence B. Schook, Martien A. M. Groenen
Software Mentions: 4
Published: over 15 years ago

10.1371/journal.pcbi.1006091

Divergent genome evolution caused by regional variation in DNA gain and loss between human and mouse
Cited by: 1
Author(s): R. Buckley, R. Daniel Kortschak, David L. Adelson
Software Mentions: 4
Published: over 8 years ago

10.3390/v12040478

Characterization of Potato Virus Y Isolates and Assessment of Nanopore Sequencing to Detect and Genotype Potato Viruses
Cited by: 42
Author(s): Michele Della Bartola, Stephen Byrne, Ewen Mullins
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pcbi.1007840

An open source tool to infer epidemiological and immunological dynamics from serological data: serosolver
Cited by: 12
Author(s): James A. Hay, Amanda Minter, Kylie E. C. Ainslie, Justin Lessler, Bingyi Yang, Derek A. T. Cummings, Adam J. Kucharski, Steven Riley
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pone.0050604

Nonparametric Method for Genomics-Based Prediction of Performance of Quantitative Traits Involving Epistasis in Plant Breeding
Cited by: 16
Author(s): Xiaofang Sun, Ping Ma, Rita H. Mumm
Software Mentions: 4
Published: over 13 years ago

10.3390/metabo11080533

Kidney Allograft Function Is a Confounder of Urine Metabolite Profiles in Kidney Allograft Recipients
Cited by: 4
Author(s): Karsten Suhre, Darshana Dadhania, John Richard Lee, Thangamani Muthukumar, Justin Chen, Steven S. Gross, Manikkam Suthanthiran
Software Mentions: 4
Published: about 5 years ago

10.3390/genes8020068

Differential Binding of Three Major Human ADAR Isoforms to Coding and Long Non-Coding Transcripts
Cited by: 34
Author(s): Josephine Galipon, Rintaro Ishii, Yutaka Suzuki, Masaru Tomita, Kumiko Ui-Tei
Software Mentions: 4
Published: over 9 years ago

10.3389/fnins.2017.00112

Antidyskinetic Effects of MEK Inhibitor Are Associated with Multiple Neurochemical Alterations in the Striatum of Hemiparkinsonian Rats
Cited by: 21
Author(s): Guiqin Chen, Shuke Nie, Chao Han, Kai Ma, Xu Yan, Zhentao Zhang, Stella M. Papa, Xin Cao
Software Mentions: 4
Published: over 9 years ago

10.1128/AEM.01346-19

Violet-Blue Light Arrays at 405 Nanometers Exert Enhanced Antimicrobial Activity for Photodisinfection of Monomicrobial Nosocomial Biofilms
Cited by: 11
Author(s): Fenella D. Halstead, Mohammed Hadis, Neil F. Marley, Kristian Brock, Michael Milward, Paul R. Cooper, Beryl Oppenheim, William M. Palin
Software Mentions: 4
Published: almost 7 years ago

10.1242/dev.139857

Cooperative binding of AP-1 and TEAD4 modulates the balance between vascular smooth muscle and hemogenic cell fate
Cited by: 41
Author(s): Nadine Obier, Pierre Cauchy, Salam A. Assi, Jane Gilmour, Michael Lie-A-Ling, Monika Lichtinger, Maarten Hoogenkamp, Laura Noailles, Peter N. Cockerill, Georges Lacaud, Valérie Kouskoff, Constanze Bonifer
Software Mentions: 4
Published: over 10 years ago

10.1371/journal.pone.0250654

Potential G-quadruplexes and i-Motifs in the SARS-CoV-2
Cited by: 25
Author(s): Efres Belmonte-Reche, Israel Serrano‐Chacón, Carlos González, Juan Gallo, Manuel Bañobre‐López
Software Mentions: 4
Published: about 5 years ago

10.1371/journal.pone.0183679

Multidimensional pooled shRNA screens in human THP-1 cells identify candidate modulators of macrophage polarization
Cited by: 31
Author(s): Ewa Surdziel, Ieuan Clay, Florian Nigsch, Anke Thiemeyer, Cyril Allard, Gregory R. Hoffman, John S. Reece‐Hoyes, Tanushree Phadke, Romain Gambert, Caroline Gubser Keller, Marie-Gabrielle Ludwig, Birgit Baumgarten, Mathias Frederiksen, Dirk Schübeler, Klaus Seuwen, Tewis Bouwmeester, Barna D. Fodor
Software Mentions: 4
Published: almost 9 years ago

10.1186/1471-2164-10-373

Computational identification of hepatitis C virus associated microRNA-mRNA regulatory modules in human livers
Cited by: 170
Author(s): Xinxia Peng, Li Yu, Kathie–Anne Walters, Elizabeth Rosenzweig, Sharon Lederer, Lauri Aicher, Sean Proll, Michael G. Katze
Software Mentions: 4
Published: about 17 years ago

10.1186/s12859-019-2656-1

Gsslasso Cox: a Bayesian hierarchical model for predicting survival and detecting associated genes by incorporating pathway information
Cited by: 13
Author(s): Zaixiang Tang, Shu‐Feng Lei, Xinyan Zhang, Zixuan Yi, Boyi Guo, Jake Y. Chen, Yueping Shen, Nengjun Yi
Software Mentions: 4
Published: over 7 years ago

10.1016/j.infsof.2013.05.001

Enforcement of entailment constraints in distributed service-based business processes
Cited by: 13
Author(s): Waldemar Hummer, Patrick Gaubatz, Mark Strembeck, Uwe Zdun, Schahram Dustdar
Software Mentions: 4
Published: almost 13 years ago

10.1111/pcmr.12568

An ongoing role for <i>Wnt</i> signaling in differentiating melanocytes in vivo
Cited by: 28
Author(s): Laura Vibert, Gerardo Aquino, Ines Gehring, Tatiana Subkankulova, Thomas F. Schilling, Andrea Rocco, Robert N. Kelsh
Software Mentions: 4
Published: over 9 years ago

10.3389/fgene.2013.00237

Blobology: exploring raw genome data for contaminants, symbionts and parasites using taxon-annotated GC-coverage plots
Cited by: 238
Author(s): Sujai Kumar, Martin O. Jones, Georgios Koutsovoulos, Michael J. Clarke, Mark Blaxter
Software Mentions: 4
Published: over 13 years ago

10.1186/s13068-018-1164-2

Defining functional diversity for lignocellulose degradation in a microbial community using multi-omics studies
Cited by: 40
Author(s): Anna Alessi, Susannah Bird, Nicola C. Oates, Yang Li, Adam Dowle, E. H. Novotny, Eduardo R. deAzevedo, Joseph P. Bennett, Igor Polikarpov, J. Peter W. Young, Simon J. McQueen‐Mason, Neil C. Bruce
Software Mentions: 4
Published: about 8 years ago

10.1186/s13059-020-02119-8

Methods for copy number aberration detection from single-cell DNA-sequencing data
Cited by: 63
Author(s): Xian Mallory, Mohammadamin Edrisi, Nicholas E. Navin, Luay Nakhleh
Software Mentions: 4
Published: almost 6 years ago

10.1371/journal.pone.0154315

VennPainter: A Tool for the Comparison and Identification of Candidate Genes Based on Venn Diagrams
Cited by: 61
Author(s): Guoliang Lin, Jing Chai, Shuo Yuan, Chao Mai, Li Cai, Robert W. Murphy, Wei Zhou, Jing Luo
Software Mentions: 4
Published: over 10 years ago

10.1186/s40709-020-00118-1

Genome wide meta-analysis of cDNA datasets reveals new target gene signatures of colorectal cancer based on systems biology approach
Cited by: 11
Author(s): Umair Ilyas, Shahiq uz Zaman, Reem Altaf, Humaira Nadeem, Syed Aun Muhammad
Software Mentions: 4
Published: about 6 years ago

10.1038/s41598-019-56485-w

Statistical Analysis of Dual-task Gait Characteristics for Cognitive Score Estimation
Cited by: 14
Author(s): Taku Matsuura, Kazuhiro Sakashita, Andrey Grushnikov, Fumio Okura, Ikuhisa Mitsugami, Yasushi Yagi
Software Mentions: 4
Published: over 6 years ago

10.7717/peerj.8938

Diffusion tubes: a method for the mass culture of ctenophores and other pelagic marine invertebrates
Cited by: 11
Author(s): Wyatt L. Patry, MacKenzie M Bubel, Cypress Hansen, Thomas Knowles
Software Mentions: 4
Published: over 6 years ago

10.1186/1758-2946-4-28

Effects of multiple conformers per compound upon 3-D similarity search and bioassay data analysis
Cited by: 16
Author(s): Sunghwan Kim, Evan Bolton, Stephen H. Bryant
Software Mentions: 4
Published: almost 14 years ago

10.3390/v12010107

Virus Metagenomics in Farm Animals: A Systematic Review
Cited by: 42
Author(s): Ka‐li Kwok, David F. Nieuwenhuijse, My V. T. Phan, Marion Koopmans
Software Mentions: 4
Published: over 6 years ago

10.1038/s41598-021-99127-w

Lung microbiome of stable and exacerbated COPD patients in Tshwane, South Africa
Cited by: 10
Author(s): Tanweer Goolam Mahomed, Rph Peters, Mushal Allam, Arshad Ismail, Senzo Mtshali, Akhter Goolam Mahomed, Veronica Ueckermann, Marleen M. Kock, M.M. Ehlers
Software Mentions: 4
Published: almost 5 years ago

10.1534/g3.119.400421

Genome-Wide Association Analysis of Anoxia Tolerance in<i>Drosophila melanogaster</i>
Cited by: 10
Author(s): Jacob B. Campbell, Paula F. Overby, Alyx E. Gray, Harry Smith, Jon F. Harrison
Software Mentions: 4
Published: almost 7 years ago

10.1038/s41598-020-58350-7

Diagnostic Uncertainty and the Epidemiology of Feline Foamy Virus in Pumas (Puma concolor)
Cited by: 8
Author(s): Nicholas G. Dannemiller, Sarah Kechejian, Simona Kraberger, Kenneth A. Logan, Mathew W. Alldredge, Kevin R. Crooks, Sue VandeWoude, Scott Carver
Software Mentions: 4
Published: over 6 years ago

10.1016/j.molcel.2019.04.002

Functional Landscape of PCGF Proteins Reveals Both RING1A/B-Dependent-and RING1A/B-Independent-Specific Activities
Cited by: 116
Author(s): Andrea Scelfo, Daniel Fernández-Pérez, Simone Tamburri, Marika Zanotti, Elisa Lavarone, Monica Soldi, Tiziana Bonaldi, Karin Johanna Ferrari, Diego Pasini
Software Mentions: 4
Published: about 7 years ago

10.1111/eva.12796

Adaptive variation for growth and resistance to a novel pathogen along climatic gradients in a foundation tree
Cited by: 21
Author(s): Collin W. Ahrens, Richard Mazanec, T. Paap, Katinka X. Ruthrof, Anthea Challis, G.E.St.J. Hardy, Margaret Byrne, David T. Tissue, Paul D. Rymer
Software Mentions: 4
Published: over 7 years ago

10.1186/1471-2148-14-51

Sex-biased mortality associated with inbreeding in Drosophila melanogaster
Cited by: 3
Author(s): Stephen Robinson, Leigh W. Simmons, W. Jason Kennington
Software Mentions: 4
Published: over 12 years ago

10.3390/molecules26072027

Discovery of Post-Translational Modifications in Emiliania huxleyi
Cited by: 2
Author(s): Van-An Duong, Onyou Nam, EonSeon Jin, Jong Park, Hookeun Lee
Software Mentions: 4
Published: over 5 years ago

10.3390/genes6010001

Down-Regulation of miR-129-5p and the let-7 Family in Neuroendocrine Tumors and Metastases Leads to Up-Regulation of Their Targets Egr1, G3bp1, Hmga2 and Bach1
Cited by: 53
Author(s): Kristina B. V. Døssing, Tina Binderup, Bogumił Kaczkowski, Anders Jacobsen, Maria Rossing, Ole Winther, Birgitte Federspiel, Ulrich Knigge, Andreas Kjær, Lennart Friis‐Hansen
Software Mentions: 4
Published: over 11 years ago

10.3389/fphys.2018.00674

Diet-Induced Obesity Affects Muscle Regeneration After Murine Blunt Muscle Trauma—A Broad Spectrum Analysis
Cited by: 19
Author(s): Pengfei Xu, Jens-Uwe Werner, Sebastian Milerski, Carmen M. Hamp, Tatjana Kuzenko, Markus Jähnert, Pascal Gottmann, Luisa de Roy, Daniela Warnecke, Alireza Abaei, Annette Palmer, Markus Huber‐Lang, Lutz Dürselen, Volker Rasche, Annette Schürmann, Martin Wabitsch, Uwe Knippschild
Software Mentions: 4
Published: about 8 years ago

10.1186/s12859-016-1191-6

Protein complex prediction for large protein protein interaction networks with the Core&amp;Peel method
Cited by: 35
Author(s): Marco Pellegrini, Miriam Baglioni, Filippo Geraci
Software Mentions: 4
Published: almost 10 years ago

10.1007/s00265-012-1371-y

Walk the line—dispersal movements of gray mouse lemurs (Microcebus murinus)
Cited by: 32
Author(s): Susanne Schliehe-Diecks, M. Eberle, Peter M. Kappeler
Software Mentions: 4
Published: about 14 years ago

10.1186/s12898-019-0252-x

Preferred, small-scale foraging areas of two Southern Ocean fur seal species are not determined by habitat characteristics
Cited by: 9
Author(s): Mia Wege, P. J. Nico de Bruyn, Mark A. Hindell, Mary‐Anne Lea, Marthán N Bester
Software Mentions: 4
Published: almost 7 years ago

10.1038/s41598-018-29329-2

Determination of system level alterations in host transcriptome due to Zika virus (ZIKV) Infection in retinal pigment epithelium
Cited by: 33
Author(s): Pawan Kumar Singh, Indu Khatri, Alokkumar Jha, Carla D. Pretto, Katherine R. Spindler, Vaithilingaraja Arumugaswami, Shailendra Giri, Ashok Kumar, Manoj Bhasin
Software Mentions: 4
Published: about 8 years ago

10.1038/srep29122

The transcriptomes of novel marmoset monkey embryonic stem cell lines reflect distinct genomic features
Cited by: 16
Author(s): Katharina Debowski, Charis Drummer, Jana Lentes, Maren Cors, Ralf Dressel, Thomas Lingner, Gabriela Salinas-Riester, Sigrid Fuchs, Erika Sasaki, Rüdiger Behr
Software Mentions: 4
Published: about 10 years ago

10.3389/fgene.2021.642759

The Analysis of Gene Expression Data Incorporating Tumor Purity Information
Cited by: 1
Author(s): Seungjun Ahn, Tyler Grimes, Somnath Datta
Software Mentions: 4
Published: almost 5 years ago

10.1371/journal.pone.0149282

Large-Scale Modelling of the Environmentally-Driven Population Dynamics of Temperate Aedes albopictus (Skuse)
Cited by: 42
Author(s): Kamil Erguler, Stephanie E. Smith-Unna, Joanna Waldock, Yiannis Proestos, George K. Christophides, Jos Lelieveld, Paul E. Parham
Software Mentions: 4
Published: over 10 years ago

10.1093/gbe/evab059

Genetic Drift Dominates Genome-Wide Regulatory Evolution Following an Ancient Whole-Genome Duplication in Atlantic Salmon
Cited by: 1
Author(s): Jukka‐Pekka Verta, Henry J Barton, Victoria L. Pritchard, Craig R. Primmer
Software Mentions: 4
Published: over 5 years ago

10.7554/eLife.56938

A flexible framework for simulating and fitting generalized drift-diffusion models
Cited by: 51
Author(s): Maxwell Shinn, Norman H Lam, John D. Murray
Software Mentions: 4
Published: about 6 years ago

10.3390/ijerph18094675

The Mortality Effect of Apparent Temperature: A Multi-City Study in Asia
Cited by: 10
Author(s): Ruibing Cao, Yuxin Wang, Jing Huang, Jie He, Pitakchon Ponsawansong, Jianbo Jin, Zhihu Xu, Teng Yang, Xiaochuan Pan, Tippawan Prapamontol, Guoxing Li
Software Mentions: 4
Published: over 5 years ago

10.7717/peerj.11096

Measuring change in biological communities: multivariate analysis approaches for temporal datasets with low sample size
Cited by: 9
Author(s): Hannah L. Buckley, Nicola J. Day, Bradley S. Case, Gavin Lear
Software Mentions: 4
Published: over 5 years ago

10.1093/conphys/coy076

Sensitivities of an endemic, endangered California smelt and two non-native fishes to serial increases in temperature and salinity: implications for shifting community structure with climate change
Cited by: 19
Author(s): Brian A. Davis, Dennis E. Cocherell, Ted Sommer, Randall D. Baxter, Tien‐Chieh Hung, Anne E. Todgham, Nann A. Fangue
Software Mentions: 4
Published: over 7 years ago

10.3389/fgene.2020.514363

Prognostic and Predictive Value of an Immunoscore Signature in Glioblastoma Multiform
Cited by: 8
Author(s): Xiangjun Tang, Pengfei Xu, Ann Chen, Gang Deng, Shenqi Zhang, Lun Gao, Long‐Jun Dai, Qianxue Chen
Software Mentions: 4
Published: almost 6 years ago

10.3389/fmicb.2018.01161

Detection of the Entomopathogenic Fungus Beauveria bassiana in the Rhizosphere of Wound-Stressed Zea mays Plants
Cited by: 33
Author(s): Aimee C. McKinnon, Travis R. Glare, Hayley J. Ridgway, Artemio Mendoza‐Mendoza, Andrew Holyoake, William Godsoe, Jennifer L. Bufford
Software Mentions: 4
Published: about 8 years ago

10.1002/ece3.6278

Enhancing pollination is more effective than increased conventional agriculture inputs for improving watermelon yields
Cited by: 11
Author(s): Thomas Sawe, Katrine Eldegard, Ørjan Totland, Samora A. Macrice, Anders Nielsen
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pgen.1003075

A Unified Method for Detecting Secondary Trait Associations with Rare Variants: Application to Sequence Data
Cited by: 6
Author(s): Dajiang Liu, Suzanne M. Leal
Software Mentions: 4
Published: over 13 years ago

10.1002/2211-5463.12275

In silico analysis of heme oxygenase structural homologues identifies group‐specific conservations
Cited by: 1
Author(s): J. Logan Irvin, Alexander J. Ropelewski, John Perozich
Software Mentions: 4
Published: almost 9 years ago

10.3389/fcell.2020.588368

A Novel Signature Constructed by RNA-Binding Protein Coding Genes to Improve Overall Survival Prediction of Glioma Patients
Cited by: 11
Author(s): Zewei Tu, Lei Shu, Jingying Li, Lei Wu, Chuming Tao, Minhua Ye, Xingen Zhu, Kai Huang
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pgen.1008280

PAX5 is part of a functional transcription factor network targeted in lymphoid leukemia
Cited by: 30
Author(s): Kazuki Okuyama, Tobias Strid, Jacob Kuruvilla, Rajesh Somasundaram, Susana Cristóbal, Emma Smith, Mahadesh A. J. Prasad, Thoas Fioretos, Henrik Lilljebjörn, Shamit Soneji, Stefan Lang, Jonas Ungerbäck, Mikael Sigvardsson
Software Mentions: 4
Published: about 7 years ago

10.1002/ece3.6035

Maternal predator‐exposure affects offspring size at birth but not telomere length in a live‐bearing fish
Cited by: 14
Author(s): Stefano Monteforte, Silvia Cattelan, Chiara Morosinotto, Andrea Pilastro, Alessandro Grapputo
Software Mentions: 4
Published: over 6 years ago

10.1289/ehp.1002546

Global Gene Expression Profiling of a Population Exposed to a Range of Benzene Levels
Cited by: 94
Author(s): Cliona M. McHale, Luoping Zhang, Qing Lan, Roel Vermeulen, Guilan Li, Alan Hubbard, Kristin E. Porter, Reuben Thomas, Christopher J. Portier, Min Shen, Stephen M. Rappaport, Shu Yin, Martyn T. Smith, Nathaniel Rothman
Software Mentions: 4
Published: over 15 years ago

10.1371/journal.ppat.1009785

Abrupt and altered cell-type specific DNA methylation profiles in blood during acute HIV infection persists despite prompt initiation of ART
Cited by: 9
Author(s): Michael J. Corley, Carlo Sacdalan, Alina P.S. Pang, Nitiya Chomchey, Nisakorn Ratnaratorn, Victor Valcour, Eugène Kroon, Kyu S. Cho, Andrew C. Belden, Donn Colby, Merlin L. Robb, Denise C. Hsu, Serena Spudich, Robert Paul, Sandhya Vasan, Lishomwa C. Ndhlovu, Rv study groups
Software Mentions: 4
Published: almost 5 years ago

10.3389/fgene.2020.00431

MetaPhat: Detecting and Decomposing Multivariate Associations From Univariate Genome-Wide Association Statistics
Cited by: 10
Author(s): Jake Lin, Rubina Tabassum, Samuli Ripatti, Matti Pirinen
Software Mentions: 4
Published: about 6 years ago

10.1242/dmm.034850

Identification of brain metastasis genes and therapeutic evaluation of histone deacetylase inhibitors in a clinically relevant model of breast cancer brain metastasis
Cited by: 21
Author(s): Soo-Hyun Kim, Richard P. Redvers, Lap Hing, Xiawei Ling, Andrew J. Lucke, Robert C. Reid, David P. Fairlie, Ángel G. Martín, Robin L. Anderson, Delphine Denoyer, Normand Pouliot
Software Mentions: 4
Published: over 8 years ago

10.1038/s41423-019-0218-0

Coexpression of CD163 and CD141 identifies human circulating IL-10-producing dendritic cells (DC-10)
Cited by: 45
Author(s): Michela Comi, Daniele Avancini, Francesca R. Santoni de Sio, Matteo Villa, Molly Javier Uyeda, Matteo Floris, Daniela Tomasoni, Alessandro Bulfone, Maria Grazia Roncarolo, Silvia Gregori
Software Mentions: 4
Published: over 7 years ago

10.1186/1475-2875-10-13

Anaemia in a phase 2 study of a blood stage falciparum malaria vaccine
Cited by: 8
Author(s): Ruth D. Ellis, Michael P. Fay, Issaka Sagara, Alassane Dicko, Kazutoyo Miura, Merepen A. Guindo, Aldiouma Guindo, Mahamadou S. Sissoko, Ogobara K. Doumbo, Dapa A. Diallo
Software Mentions: 4
Published: over 15 years ago