Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/s13059-017-1277-0

https://doi.org/10.1186/s13059-017-1277-0

stageR: a general stage-wise method for controlling the gene-level false discovery rate in differential expression and differential transcript usage

Cited by: 72
Author(s): Koen Van den Berge, Charlotte Soneson, Mark D. Robinson
Published: about 7 years ago

Software Mentions 4

bioconductor: DEXSeq
Inference of differential exon usage in RNA-Seq
Papers that mentioned: 226
bioconductor: edgeR
Empirical Analysis of Digital Gene Expression Data in R
Papers that mentioned: 6,568
bioconductor: stageR
stageR: stage-wise analysis of high throughput gene expression data in R
Papers that mentioned: 6
pypi: kallisto
The Kallisto software enables the efficient calculation of atomic features that can be used within a quantitative structure-activity relationship (QSAR) approach. Furthermore, several modelling helpers are implemented.
Papers that mentioned: 307