Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: bioconductor: stageR
https://packages.ecosyste.ms/registries/bioconductor.org/packages/stageR
stageR: stage-wise analysis of high throughput gene expression data in R
1 version
Latest release: about 1 year ago
2 dependent packages
15,375 downloads total
Papers Mentioning stageR 6
10.12688/f1000research.15398.3
Swimming downstream: statistical analysis of differential transcript usage following Salmon quantificationCited by: 53
Author(s): Michael I. Love, Charlotte Soneson, Rob Patro
Software Mentions: 16
Published: about 6 years ago
10.1186/s13148-021-01144-z
Whole-genome methylation analysis of testicular germ cells from cryptozoospermic men points to recurrent and functionally relevant DNA methylation changesCited by: 9
Author(s): Sara Di Persio, Elsa Leitão, Marius Wöste, Tobias Tekath, Jann‐Frederik Cremers, Martin Dugas, Xiaolin Liao, Gerd Meyer zu Hörste, Sabine Kliesch, Sandra Laurentino, Nina Neuhaus, Bernhard Horsthemke
Software Mentions: 8
Published: over 3 years ago
10.7554/eLife.63324
Adipocyte NR1D1 dictates adipose tissue expansion during obesityCited by: 20
Author(s): Louise Hunter, Charlotte E Pelekanou, Nichola J Barron, Rebecca C Northeast, M Grudzień, Antony Adamson, Polly Downton, Thomas Cornfield, Peter Cunningham, Jean-Noël Billaud, Leanne Hodson, Andrew S. I. Loudon, Richard D. Unwin, Mudassar Iqbal, David Ray, David A. Bechtold
Software Mentions: 5
Published: over 3 years ago
10.1186/s13059-017-1277-0
stageR: a general stage-wise method for controlling the gene-level false discovery rate in differential expression and differential transcript usageCited by: 72
Author(s): Koen Van den Berge, Charlotte Soneson, Mark D. Robinson
Software Mentions: 4
Published: over 7 years ago
10.1038/s41598-019-54782-y
Investigating the energy crisis in Alzheimer disease using transcriptome studyCited by: 21
Author(s): S. Akila Parvathy Dharshini, Y-h. Taguchi, M. Michael Gromiha
Software Mentions: 4
Published: about 5 years ago
10.1186/s40478-021-01177-8
Sex-specific DNA methylation differences in Alzheimer’s disease pathologyCited by: 23
Author(s): Lanyu Zhang, Juan I. Young, Lissette Gomez, Tiago C. Silva, Michael A. Schmidt, Jesse Cai, Xi Chen, Eden R. Martin, Lily Wang
Software Mentions: 2
Published: over 3 years ago