10.1534/g3.119.400757

Machine Learning Enables High-Throughput Phenotyping for Analyses of the Genetic Architecture of Bulliform Cell Patterning in Maize
Cited by: 9
Author(s): Pengfei Qiao, Lin Meng, Miguel Vasquez, Susanne Matschi, James Chamness, Matheus Baseggio, Laurie G. Smith, Mert R. Sabuncu, Michael A. Gore, Michael J. Scanlon
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pgen.1008805

Genetic analysis of osteoblast activity identifies Zbtb40 as a regulator of osteoblast activity and bone mass
Cited by: 11
Author(s): Madison L. Doolittle, Gina M. Calabrese, Larry D. Mesner, Dana A. Godfrey, Robert Maynard, Cheryl Ackert‐Bicknell, Charles R. Farber
Software Mentions: 4
Published: about 6 years ago

10.1534/g3.119.400998

A Collection of Pre-mRNA Splicing Mutants in <i>Arabidopsis thaliana</i>
Cited by: 20
Author(s): Tohru Kanno, Peter Venhuizen, Ming‐Tsung Wu, Phebe Chiou, Chia-Liang Chang, Maria Kalyna, A. J. M. Matzke, Marjori Matzke
Software Mentions: 4
Published: about 6 years ago

10.18632/aging.103064

Cutaneous wound healing in aged, high fat diet-induced obese female or male C57BL/6 mice
Cited by: 14
Author(s): Marta Kopcewicz, Katarzyna Walendzik, Joanna Bukowska, Anna Kur‐Piotrowska, Sylwia Machcińska, Jeffrey M. Gimble, Barbara Gawrońska‐Kozak
Software Mentions: 4
Published: over 6 years ago

10.1038/s41598-020-78773-6

Evaluation of methods for the reduction of contaminating host reads when performing shotgun metagenomic sequencing of the milk microbiome
Cited by: 28
Author(s): Min Yap, Conor Feehily, Calum J. Walsh, Mark A. Fenelon, Eileen F. Murphy, Fionnuala M. McAuliffe, Douwe van Sinderen, Paul W. O’Toole, Órla O’Sullivan, Paul D. Cotter
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-020-78841-x

Gravettian cranial morphology and human group affinities during the European Upper Palaeolithic
Cited by: 6
Author(s): Aurélien Mounier, Yann Heuzé, Mathilde Samsel, Sergey Vasilyev, Laurent Klaric, Sébastien Villotte
Software Mentions: 4
Published: over 5 years ago

10.1186/1471-2164-10-363

Grapevine cell early activation of specific responses to DIMEB, a resveratrol elicitor
Cited by: 56
Author(s): Anita Zamboni, Pamela Gatto, Alessandro Cestaro, S. Pilati, Roberto Viola, Fulvio Mattivi, C. Moser, Riccardo Velasco
Software Mentions: 4
Published: about 17 years ago

10.3390/ani10061032

Increasing Dietary Lysine Impacts Differently Growth Performance of Growing Pigs Sorted by Body Weight
Cited by: 8
Author(s): Pau Aymerich, Carme Soldevila, Jordi Bonet, J. Gasa, Julià Coma, David Solà-Oriol
Software Mentions: 4
Published: about 6 years ago

10.1186/s12916-017-0851-3

Comprehensive DNA methylation study identifies novel progression-related and prognostic markers for cutaneous melanoma
Cited by: 55
Author(s): Jasper Wouters, Miguel Vizoso, Anna Martínez-Cardús, Francesc Carmona, Olivier Govaere, Teresa Laguna, Jesuchristopher Joseph, Peter Dynoodt, Claudia Aura, Mona Foth, Roy H. E. Cloots, Karin van den Hurk, Balázs Bálint, Ian Murphy, Enda McDermott, Kieran Sheahan, Karin Jirström, Björn Nodin, Girish Mallya-Udupi, Joost J. van den Oord, William M. Gallagher, Manel Esteller
Software Mentions: 4
Published: about 9 years ago

10.3390/life6010011

Support Values for Genome Phylogenies
Cited by: 8
Author(s): Fabian Klötzl, Bernhard Haubold
Software Mentions: 4
Published: over 10 years ago

10.1038/s41598-021-81269-6

Chronic BDNF simultaneously inhibits and unmasks superficial dorsal horn neuronal activity
Cited by: 4
Author(s): Sascha R.A. Alles, Max A. Odem, Van B. Lu, Ryan M. Cassidy, Peter A. Smith
Software Mentions: 4
Published: over 5 years ago

10.3390/insects11010004

Comparative Transcriptome Analysis of Thitarodes Armoricanus in Response to the Entomopathogenic Fungi Paecilomyces Hepiali and Ophiocordyceps Sinensis
Cited by: 7
Author(s): Zhongchen Rao, Li Cao, Hua Wu, Xuehong Qiu, Guiqing Liu, Richou Han
Software Mentions: 4
Published: over 6 years ago

10.1038/s41598-021-84886-3

Listener’s personality traits predict changes in pupil size during auditory language comprehension
Cited by: 6
Author(s): Isabell Hubert Lyall, Juhani Järvikivi
Software Mentions: 4
Published: over 5 years ago

10.1200/CCI.19.00118

Statistical Assessment of Depth Normalization for Small RNA Sequencing
Cited by: 7
Author(s): Li‐Xuan Qin, Jian Zou, Jiejun Shi, Ann Lee, Aleksandra Mihailović, Thalia A. Farazi, Thomas Tuschl, Samuel Singer
Software Mentions: 4
Published: almost 6 years ago

10.1038/s41598-021-88516-w

Chromatin occupancy and target genes of the haematopoietic master transcription factor MYB
Cited by: 11
Author(s): Roza Berhanu Lemma, Marit Ledsaak, Bettina M. Fuglerud, Geir Kjetil Sandve, Ragnhild Eskeland, Odd S. Gabrielsen
Software Mentions: 4
Published: over 5 years ago

10.3390/ani11092682

Social Behaviour in Zoo Bachelor Groups: A Case Study of Related South American Fur Seals
Cited by: 0
Author(s): Christa Emmett, Mathilda Digby, J. H. Pope, Ellen Williams
Software Mentions: 4
Published: almost 5 years ago

10.1038/s41598-021-83153-9

Insufficient sampling constrains our characterization of plant microbiomes
Cited by: 11
Author(s): Lorinda Bullington, Ylva Lekberg, Beau Larkin
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-021-83886-7

Using protein turnover to expand the applications of transcriptomics
Cited by: 2
Author(s): Marissa A. Smail, James Reigle, Robert E. McCullumsmith
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-021-84044-9

Identification of candidate repurposable drugs to combat COVID-19 using a signature-based approach
Cited by: 18
Author(s): Sinead M. O’Donovan, Ali Sajid Imami, Hunter M. Eby, Nicholas Henkel, Justin Creeden, Sophie Asah, Xiaolu Zhang, Xiaojun Wu, Rawan Alnafisah, R. Travis Taylor, James Reigle, Alexander W. Thorman, Behrouz Shamsaei, Jarek Meller, Robert E. McCullumsmith
Software Mentions: 4
Published: over 5 years ago

10.1186/1752-0509-6-54

Assessment of network perturbation amplitudes by applying high-throughput data to causal biological networks
Cited by: 96
Author(s): Florian Martin, Timothy M. Thomson, Alain Sewer, David A. Drubin, Carole Mathis, Dirk Weisensee, Dexter Pratt, Julia Hoeng, Manuel C. Peitsch
Software Mentions: 4
Published: about 14 years ago

10.1038/s41598-021-87069-2

White matter abnormalities in adults with bipolar disorder type-II and unipolar depression
Cited by: 6
Author(s): Anna Manelis, Adriane M. Soehner, Yaroslav Halchenko, Skye Satz, Rachel Ragozzino, Mora M. Lucero, Holly A. Swartz, Mary L. Phillips, Amelia Versace
Software Mentions: 4
Published: over 5 years ago

10.1186/s12859-015-0460-0

Inferring dynamic gene regulatory networks in cardiac differentiation through the integration of multi-dimensional data
Cited by: 20
Author(s): Wuming Gong, Naoko Koyano-Nakagawa, Tongbin Li, Daniel J. Garry
Software Mentions: 4
Published: over 11 years ago

10.1038/s41598-021-88363-9

Transcriptional signatures in prefrontal cortex confer vulnerability versus resilience to food and cocaine addiction-like behavior
Cited by: 11
Author(s): Mohit Navandar, Elena Martín‐García, Rafaël Maldonado, Beat Lutz, Susanne Gerber, Iñigo Ruı́z de Azúa
Software Mentions: 4
Published: over 5 years ago

10.1186/s12863-016-0365-6

Fragman: an R package for fragment analysis
Cited by: 45
Author(s): Giovanny Covarrubias‐Pazaran, Luis Díaz-Garcia, Brandon Schlautman, Walter Salazar, Juan Zalapa
Software Mentions: 4
Published: over 10 years ago

10.1186/s12864-015-2164-2

The direction of cross affects obesity after puberty in male but not female offspring
Cited by: 5
Author(s): Stefan Kärst, Danny Arends, Sebastian Heise, Jan Trost, Marie–Laure Yaspo, Vyacheslav Amstislavskiy, Thomas S. Risch, Hans Lehrach, Gudrun A. Brockmann
Software Mentions: 4
Published: almost 11 years ago

10.1155/2013/340620

State-of-the-Art Fusion-Finder Algorithms Sensitivity and Specificity
Cited by: 79
Author(s): Matteo Carrara, Marco Beccuti, Fulvio Lazzarato, Federica Cavallo, Francesca Cordero, Susanna Donatelli, Raffaele Calogero
Software Mentions: 4
Published: over 13 years ago

10.26508/lsa.202000825

The RNA-binding profile of the splicing factor SRSF6 in immortalized human pancreatic β-cells
Cited by: 13
Author(s): Maria Inês Alvelos, Mirko Brüggemann, F. X. Reymond Sutandy, Jonàs Juan-Mateu, Máikel Luís Colli, Anke Busch, Miguel Lopes, Ângela Castela, Annemieke Aartsma‐Rus, Julian König, Kathi Zarnack, Décio L. Eizirik
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-021-93855-9

Sex and age bias viral burden and interferon responses during SARS-CoV-2 infection in ferrets
Cited by: 10
Author(s): Magen E. Francis, Brian Richardson, Una Goncin, Mara McNeil, Melissa Rioux, Mary K. Foley, Anni Ge, Roger D. Pechous, Jason Kindrachuk, Cheryl M. Cameron, Christopher T. Richardson, J. Lew, Steven Machtaler, Mark J. Cameron, Volker Gerdts, Darryl Falzarano, Alyson A. Kelvin
Software Mentions: 4
Published: about 5 years ago

10.1093/hmg/ddab140

Human photoreceptor cells from different macular subregions have distinct transcriptional profiles
Cited by: 15
Author(s): Andrew P. Voigt, Nathaniel K. Mullin, S. Scott Whitmore, Adam P. DeLuca, Erin R Burnight, Xiuying Liu, Budd A. Tucker, Todd E. Scheetz, Edwin M Stone, Robert F. Mullins
Software Mentions: 4
Published: about 5 years ago

10.1042/BSR20203020

Network-based approach to identify prognosis-related genes in tamoxifen-treated patients with estrogen receptor-positive breast cancer
Cited by: 4
Author(s): Yanyan Wang, Xiaonan Gong, Yujie Zhang
Software Mentions: 4
Published: almost 5 years ago

10.1371/journal.pone.0252686

Governance quality indicators for organ procurement policies
Cited by: 6
Author(s): David Rodríguez‐Arias, Alberto Molina Pérez, Ivar R. Hannikainen, Janet Delgado, Benjamin Söchtig, Sabine Wöhlke, Silke Schicktanz
Software Mentions: 4
Published: about 5 years ago

10.3390/ijms21062249

AHR Signaling Dampens Inflammatory Signature in Neonatal Skin γδ T Cells
Cited by: 11
Author(s): Katja Merches, Alfonso Schiavi, Heike Weighardt, Swantje Steinwachs, Nadine Teichweyde, Irmgard Förster, K Hochrath, Beatrix Schumak, Natascia Ventura, Patrick Petzsch, Karl Köhrer, Charlotte Esser
Software Mentions: 4
Published: over 6 years ago

10.3390/cancers13184539

Atomic Force Microscope Nanoindentation Analysis of Diffuse Astrocytic Tumor Elasticity: Relation with Tumor Histopathology
Cited by: 4
Author(s): Abraham Tsitlakidis, Anastasia Tsingotjidou, Aristeidis Κritis, Angeliki Cheva, Panagiotis Selviaridis, Elias C. Aifantis, Nicolas Foroglou
Software Mentions: 4
Published: almost 5 years ago

10.1093/conphys/coab052

Effects of human disturbance on postnatal growth and baseline corticosterone in a long-lived bird
Cited by: 2
Author(s): Hannah Watson, Pat Monaghan, Britt J. Heidinger, Mark Bolton
Software Mentions: 4
Published: over 5 years ago

10.3390/ijms22041912

Sensitivity to Cisplatin in Head and Neck Cancer Cells Is Significantly Affected by Patient-Derived Cancer-Associated Fibroblasts
Cited by: 13
Author(s): Barbora Peltanová, Marketa Liskova, Jaromír Gumulec, Martina Raudenská, Hana Polanská, Tomáš Vaculovič, David Kalfeřt, Marek Grega, Jan Plzák, Jan Betka, Michal Masařík
Software Mentions: 4
Published: over 5 years ago

10.1186/s13104-020-05371-0

FINET: Fast Inferring NETwork
Cited by: 9
Author(s): Anyou Wang, Rong Hai
Software Mentions: 4
Published: over 5 years ago

10.1186/s13059-018-1437-x

Vex-seq: high-throughput identification of the impact of genetic variation on pre-mRNA splicing efficiency
Cited by: 63
Author(s): Scott I. Adamson, Lijun Zhan, Brenton R. Graveley
Software Mentions: 4
Published: about 8 years ago

10.3390/ijms22157834

Individual DNA Methylation Pattern Shifts in Nanoparticles-Exposed Workers Analyzed in Four Consecutive Years
Cited by: 6
Author(s): Andrea Rössnerová, K. Hoňková, Irena Chvojková, Daniela Pelclová, Vladimı́r Ždı́mal, Jaroslav A. Hubacek, Lucie Lischková, Štěpánka Vlčková, Jakub Ondráček, Štěpánka Dvořáčková, Jan Topinka, Pavel Rössner
Software Mentions: 4
Published: about 5 years ago

10.1002/ece3.7466

Turning to the dark side: LED light at night alters the activity and species composition of a foraging bat assemblage in the northeastern United States
Cited by: 5
Author(s): Chad L. Seewagen, Amanda M. Adams
Software Mentions: 4
Published: over 5 years ago

10.7554/eLife.64204

Single-PanIN-seq unveils that ARID1A deficiency promotes pancreatic tumorigenesis by attenuating KRAS-induced senescence
Cited by: 5
Author(s): Shou Liu, Wenjian Cao, Yichi Niu, Jiayi Luo, Yanhua Zhao, Zheng Hu, Chenghang Zong
Software Mentions: 4
Published: about 5 years ago

10.2196/14861

An Internet-Based Psychological Intervention With a Serious Game to Improve Vitality, Psychological and Physical Condition, and Immune Function in Healthy Male Adults: Randomized Controlled Trial
Cited by: 3
Author(s): Lemmy Schakel, Dieuwke S. Veldhuijzen, Henriët van Middendorp, Corine Prins, Anne M H F Drittij, Frank Vrieling, Leo G. Visser, Tom H. M. Ottenhoff, Simone A. Joosten, Andrea Evers
Software Mentions: 4
Published: about 6 years ago

10.7554/eLife.29156

Major transcriptional changes observed in the Fulani, an ethnic group less susceptible to malaria
Cited by: 33
Author(s): Jaclyn Quin, Ioana Bujila, Mariama Chérif, Guillaume S. Sanou, Ying Qu, Manijeh Vafa Homann, Anna Rolicka, Sodiomon B. Sirima, Mary A. O’Connell, Andreas Lennartsson, Marita Troye‐Blomberg, Issa Nébié, Ann‐Kristin Östlund Farrants
Software Mentions: 4
Published: almost 9 years ago

10.1080/20002297.2021.1946316

Microbial characteristics across different tongue coating types in a healthy population
Cited by: 5
Author(s): Hairong Chen, Qingwei Li, Min Li, Sheng Liu, Chensi Yao, Zixiong Wang, Zhixin Zhao, Ping Liu, Fan Yang, Xinjian Li, Jun Wang, Yi-Xin Zeng, Xiaolin Tong
Software Mentions: 4
Published: over 5 years ago

10.7554/eLife.04235

Polycomb- and REST-associated histone deacetylases are independent pathways toward a mature neuronal phenotype
Cited by: 43
Author(s): James C. McGann, Jon A. Oyer, Saurabh Garg, Huilan Yao, Jun Li, Xin Feng, Lujian Liao, John R. Yates, Gail Mandel
Software Mentions: 4
Published: almost 12 years ago

10.1093/bioinformatics/btv470

<i>motifbreakR</i>: an R/Bioconductor package for predicting variant effects at transcription factor binding sites
Cited by: 179
Author(s): Simon Coetzee, Gerhard A. Coetzee, Dennis J. Hazelett
Software Mentions: 4
Published: almost 11 years ago

10.1038/s41598-020-57476-y

Latency and interval therapy affect the evolution in metastatic colorectal cancer
Cited by: 5
Author(s): Hamid Nikbakht, Selin Jessa, Mahadeo A. Sukhai, Madeleine Arseneault, Tong Zhang, Louis Létourneau, Mariam Thomas, Mathieu Bourgey, Michael H. A. Roehrl, Robert Eveleigh, Eric X. Chen, Monika K. Krzyzanowska, Malcolm J. Moore, Amanda Giesler, Celeste Yu, Philippe L. Bedard, Suzanne Kamel‐Reid, Jacek Majewski, Lillian L. Siu, Yasser Riazalhosseini, Donna M. Graham
Software Mentions: 4
Published: over 6 years ago

10.18632/oncotarget.15068

Genome-scale analysis identifies GJB2 and ERO1LB as prognosis markers in patients with pancreatic cancer
Cited by: 39
Author(s): Tao Zhu, Yuanfeng Gao, Yixin Chen, Zhibin Wang, Ji‐Ye Yin, Xiao‐Yuan Mao, Xi Li, Wei Zhang, Hong‐Hao Zhou, Zhao‐Qian Liu
Software Mentions: 4
Published: over 9 years ago

10.1186/s13072-018-0186-0

Transient reduction of DNA methylation at the onset of meiosis in male mice
Cited by: 36
Author(s): Valeriya Gaysinskaya, Brendan Miller, Chiara De Luca, Godfried W. van der Heijden, Kasper D. Hansen, Alex Bortvin
Software Mentions: 4
Published: over 8 years ago

10.1186/s12967-020-02527-1

Development and validation of a cancer stem cell-related signature for prognostic prediction in pancreatic ductal adenocarcinoma
Cited by: 15
Author(s): Zengyu Feng, Minmin Shi, Kexian Li, Yang Ma, Lingxi Jiang, Hao Chen, Chenghong Peng
Software Mentions: 4
Published: almost 6 years ago

10.3389/fphys.2021.670989

Strenuous Physical Training, Physical Fitness, Body Composition and Bacteroides to Prevotella Ratio in the Gut of Elderly Athletes
Cited by: 15
Author(s): Katarína Šoltýs, Leonard Lendvorský, Ivan Hric, Eva Baranovičová, Adela Penesová, I. Mikula, Miroslav Böhmer, Jaroslav Budiš, Silvia Vávrová, Jozef Grones, Marián Grendár, Martin Kolísek, Viktor Bielik
Software Mentions: 4
Published: about 5 years ago

10.7717/peerj.11206

Influence of hunting strategy on foraging efficiency in Galapagos sea lions
Cited by: 6
Author(s): Jessica-Anne Blakeway, John P. Y. Arnould, Andrew J. Hoskins, Patricia Martin-Cabrera, Grace J. Sutton, Luis A. Hückstädt, Daniel P. Costa, Diego Páez‐Rosas, Stella Villegas‐Amtmann
Software Mentions: 4
Published: over 5 years ago

10.1186/s12874-021-01352-4

Symptom clusters among cancer survivors: what can machine learning techniques tell us?
Cited by: 6
Author(s): Koen Ilja Neijenhuijs, Carel F.W. Peeters, Henk van Weert, Pim Cuijpers, I. Verdonck-de Leeuw
Software Mentions: 4
Published: almost 5 years ago

10.1186/s11689-018-9248-7

Characterization of autism spectrum disorder and neurodevelopmental profiles in youth with XYY syndrome
Cited by: 21
Author(s): Lisa Joseph, Cristan Farmer, Colby Chlebowski, Laura Henry, Ari M. Fish, Catherine Mankiw, Anastasia Xenophontos, Liv S. Clasen, Bethany Sauls, Jakob Seidlitz, Jonathan D. Blumenthal, Erin Torres, Audrey Thurm, Armin Raznahan
Software Mentions: 4
Published: almost 8 years ago

10.1186/s13148-019-0749-3

A genome-wide DNA methylation signature for SETD1B-related syndrome
Cited by: 41
Author(s): Izabela M. Krzyzewska, Saskia M. Maas, Peter Henneman, Karin van der Lip, Andrea Venema, Kristin W. Barañano, Anna Chassevent, Erfan Aref‐Eshghi, Anthonie J. van Essen, Tokiko Fukuda, Hiroko Ikeda, Marie Line Jacquemont, H.-G. Kim, Audrey Labalme, Lewis Sm, Gaëtan Lesca, Irene Madrigal, Sonal Mahida, Naomichi Matsumoto, Raquel Rabionet, Evica Rajcan‐Separovic, Ying Qiao, Bekim Sadiković, Hirotomo Saitsu, David A. Sweetser, Mariëlle Alders, Marcel M.A.M. Mannens
Software Mentions: 4
Published: almost 7 years ago

10.3389/fphys.2021.675426

Impaired Attentional Processing During Parabolic Flight
Cited by: 3
Author(s): Anika Friedl-Werner, Marie-Laure Machado, Costantino Balestra, Yannick Liegard, Bruno Philoxène, Katharina Brauns, Alexander Ac Stahn, Martin Hitier, S. Besnard
Software Mentions: 4
Published: about 5 years ago

10.1093/femsec/fiab054

Relative contributions of egg-associated and substrate-associated microorganisms to black soldier fly larval performance and microbiota
Cited by: 12
Author(s): Stijn J. J. Schreven, Hugo de Vries, Gerben D. A. Hermes, Hauke Smidt, Marcel Dicke, J.J.A. van Loon
Software Mentions: 4
Published: over 5 years ago

10.3389/fimmu.2016.00603

TGF-β Affects the Differentiation of Human GM-CSF+ CD4+ T Cells in an Activation- and Sodium-Dependent Manner
Cited by: 5
Author(s): Szabolcs Éliás, Angelika Schmidt, Venkateshan Kannan, John Andersson, Jesper Tegnér
Software Mentions: 4
Published: over 9 years ago

10.3389/fphys.2021.661670

Effects of Heat Waves During Post-natal Development on Mitochondrial and Whole Body Physiology: An Experimental Study in Zebra Finches
Cited by: 9
Author(s): Riccardo Ton, Antoine Stier, Christine Cooper, Simon C. Griffith
Software Mentions: 4
Published: over 5 years ago

10.3389/fphys.2021.638669

Head-Down Tilt Position, but Not the Duration of Bed Rest Affects Resting State Electrocortical Activity
Cited by: 8
Author(s): Katharina Brauns, Anika Friedl-Werner, Martina Anna Maggioni, Hanns‐Christian Gunga, Alexander Stahn
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-021-89637-y

Impact of diesel and biodiesel contamination on soil microbial community activity and structure
Cited by: 21
Author(s): Eduardo K. Mitter, James J. Germida, J. R. de Freitas
Software Mentions: 4
Published: about 5 years ago

10.1371/journal.pone.0236791

Eradicating the large white butterfly from New Zealand eliminates a threat to endemic Brassicaceae
Cited by: 6
Author(s): C.B. Phillips, Kerry Brown, Christopher Green, Richard Toft, G.P. Walker, Keith Broome
Software Mentions: 4
Published: about 6 years ago

10.18632/aging.203122

Do eye diseases increase the risk of arthritis in the elderly population?
Cited by: 7
Author(s): Wenyi Jin, Qian Yao, Zilin Liu, Weipeng Cao, Yubiao Zhang, Zhifei Che, Hao Peng
Software Mentions: 4
Published: about 5 years ago

10.3389/fonc.2020.550002

Using Machine Learning Modeling to Explore New Immune-Related Prognostic Markers in Non-Small Cell Lung Cancer
Cited by: 8
Author(s): Jiasheng Xu, Han Nie, Jiarui He, Xinlu Wang, Kaili Liao, Luxia Tu, Zhenfang Xiong
Software Mentions: 4
Published: almost 6 years ago

10.1038/s41598-021-90690-w

Comprehensive machine learning based study of the chemical space of herbicides
Cited by: 15
Author(s): Davor Oršolić, Vesna Pehar, Tomislav Šmuc, Višnja Stepanić
Software Mentions: 4
Published: about 5 years ago

10.1186/1471-2105-15-62

Stability SCAD: a powerful approach to detect interactions in large-scale genomic study
Cited by: 1
Author(s): Jianwei Gou, Yang Zhao, Wei Yongyue, Chen Wu, Ruyang Zhang, Yongyong Qiu, Ping Zeng, Wen Tan, Dianke Yu, Tangchun Wu, Zhibin Hu, Dongxin Lin, Hongbing Shen, Feng Chen
Software Mentions: 4
Published: over 12 years ago

10.1186/s12862-015-0289-1

Higher speciation and lower extinction rates influence mammal diversity gradients in Asia
Cited by: 17
Author(s): Krishnapriya Tamma, Uma Ramakrishnan
Software Mentions: 4
Published: over 11 years ago

10.1371/journal.pcbi.1007773

Dysregulated biodynamics in metabolic attractor systems precede the emergence of amyotrophic lateral sclerosis
Cited by: 9
Author(s): Paul Curtin, Christine Austin, Austen Curtin, Chris Gennings, Claudia Figueroa‐Romero, Kristen A. Mikhail, Tatiana M. Botero, Stephen A. Goutman, Eva L. Feldman, Manish Arora
Software Mentions: 4
Published: over 6 years ago

10.1002/ece3.2961

Longevity is associated with relative brain size in birds
Cited by: 46
Author(s): Piotr Minias, Patrycja Podlaszczuk
Software Mentions: 4
Published: over 9 years ago

10.1007/s10549-021-06328-y

Increased gene expression variability in BRCA1-associated and basal-like breast tumours
Cited by: 2
Author(s): George A. R. Wiggins, Michael A. Black, Anita K. Dunbier, Arthur Morley‐Bunker, kConFab Investigators, John F. Pearson, Logan C. Walker
Software Mentions: 4
Published: about 5 years ago

10.3389/fgene.2015.00130

An engine for global plant diversity: highest evolutionary turnover and emigration in the American tropics
Cited by: 76
Author(s): Alexandre Antonelli, Alexander Zizka, Daniele Silvestro, Ruud Scharn, Borja Cascales‐Miñana, Christine D. Bacon
Software Mentions: 4
Published: over 11 years ago

10.1002/cam4.3654

Establishment of a prognostic model of four genes in gastric cancer based on multiple data sets
Cited by: 11
Author(s): Liqun Zhou, Shi H Li, You Wu, Lin Xin
Software Mentions: 4
Published: over 5 years ago

10.1017/cts.2020.556

Variable selection methods for identifying predictor interactions in data with repeatedly measured binary outcomes
Cited by: 0
Author(s): Bethany J. Wolf, Yunyun Jiang, Sylvia H. Wilson, Jim Oates
Software Mentions: 4
Published: over 5 years ago

10.3390/microarrays1020084

Quality Visualization of Microarray Datasets Using Circos
Cited by: 2
Author(s): Martin Koch, Michael Wiese
Software Mentions: 4
Published: about 14 years ago

10.1186/s12864-021-07897-4

A chromosome-level genome assembly of Cairina moschata and comparative genomic analyses
Cited by: 4
Author(s): Jun Fan, Yaoxin Jiang, Wenxuan Wang, Changyi Xiao, Ruiyi Lin, Tingting Xie, Wing‐Kin Sung, Shijun Li, Ivan Jakovlić, Jianhai Chen, Xiaoyong Du
Software Mentions: 4
Published: about 5 years ago

10.1186/1471-2164-12-5

The 'PUCE CAFE' Project: the First 15K Coffee Microarray, a New Tool for Discovering Candidate Genes correlated to Agronomic and Quality Traits
Cited by: 23
Author(s): Isabelle Privat, Amélie Bardil, Aureliano Bombarely, Dany Séverac, Christelle Le Dantec, Ivanna Fuentes, Lukas A. Mueller, Thierry Joët, David Pot, Séverine Foucrier, Stéphane Dussert, Thierry Leroy, Laurent Journot, Alexandre de Kochko, Claudine Campa, Marie‐Christine Combes, Philippe Lebailly, Benoît Bertrand
Software Mentions: 4
Published: over 15 years ago

10.3390/genes12060917

Sex-Differences in Traumatic Brain Injury in the Absence of Tau in Drosophila
Cited by: 4
Author(s): Ekta Shah, Katherine Gurdziel, Douglas M. Ruden
Software Mentions: 4
Published: about 5 years ago

10.1371/journal.pone.0221760

Population size estimation for quality control of ChIP-Seq datasets
Cited by: 4
Author(s): Semyon Kolmykov, Yury V. Kondrakhin, Ivan S. Yevshin, Ruslan N. Sharipov, Anna S. Ryabova, Fedor A. Kolpakov
Software Mentions: 4
Published: almost 7 years ago

10.1038/s41598-020-76796-7

The effect of hypoxia on the proteomic signature of pig adipose-derived stromal/stem cells (pASCs)
Cited by: 7
Author(s): Joanna Bukowska, Mariola Słowińska, Patrycja Cierniak, Marta Kopcewicz, Katarzyna Walendzik, Trivia Frazier, Barbara Gawrońska‐Kozak
Software Mentions: 4
Published: over 5 years ago

10.1186/s12859-018-2491-9

Classical and Bayesian random-effects meta-analysis models with sample quality weights in gene expression studies
Cited by: 4
Author(s): Umaporn Siangphoe, Kellie J. Archer, Nitai D. Mukhopadhyay
Software Mentions: 4
Published: over 7 years ago

10.3390/vetsci5030077

Estimating the Size of Dog Populations in Tanzania to Inform Rabies Control
Cited by: 20
Author(s): Maganga Sambo, Katie Hampson, Joel Changalucha, Sarah Cleaveland, Tiziana Lembo, Kennedy Lushasi, Eberhard Mbunda, Zacharia Mtema, Lwitiko Sikana, Paul C. D. Johnson
Software Mentions: 4
Published: almost 8 years ago

10.1186/s12859-017-1571-6

Avoiding the pitfalls of gene set enrichment analysis with SetRank
Cited by: 87
Author(s): Cédric Simillion, Robin Liechti, Heidi E. L. Lischer, Vassilios Ioannidis, Rémy Bruggmann
Software Mentions: 4
Published: over 9 years ago

10.3389/fbioe.2015.00028

G-CNV: A GPU-Based Tool for Preparing Data to Detect CNVs with Read-Depth Methods
Cited by: 8
Author(s): Andrea Manconi, Elias Manca, Marco Moscatelli, Matteo Gnocchi, Alessandro Orro, Giuliano Armano, Luciano Milanesi
Software Mentions: 4
Published: over 11 years ago

10.1371/journal.pone.0117997

Utilisation of Intensive Foraging Zones by Female Australian Fur Seals
Cited by: 26
Author(s): Andrew J. Hoskins, Daniel P. Costa, John P. Y. Arnould
Software Mentions: 4
Published: over 11 years ago

10.1186/s12859-016-1403-0

Robust multi-group gene set analysis with few replicates
Cited by: 4
Author(s): Pashupati P. Mishra, Alan Medlar, Liisa Holm, Petri Törönen
Software Mentions: 4
Published: over 9 years ago

10.1002/aps3.1037

chromploid: An R package for chromosome number evolution across the plant tree of life
Cited by: 19
Author(s): Rosana Zenil‐Ferguson, J. Gordon Burleigh, José Miguel Ponciano
Software Mentions: 4
Published: over 8 years ago

10.1111/evo.12656

The evolution of parental care in insects: A test of current hypotheses
Cited by: 59
Author(s): James D. J. Gilbert, Andrea Manica
Software Mentions: 4
Published: over 11 years ago

10.3389/fonc.2021.674897

Analysis of Immune-Related Signatures Related to CD4+ T Cell Infiltration With Gene Co-Expression Network in Pancreatic Adenocarcinoma
Cited by: 3
Author(s): Zhen Tan, Yubin Lei, Bo Zhang, Si Shi, Jiang Liu, Xianjun Yu, Jin Xu, Chen Liang
Software Mentions: 4
Published: about 5 years ago

10.1186/s13059-017-1203-5

Multi-tissue DNA methylation age predictor in mouse
Cited by: 307
Author(s): Thomas M. Stubbs, Marc Jan Bonder, Anne-Katrien Stark, Felix Krueger, Ferdinand von Meyenn, Oliver Stegle, Wolf Reik
Software Mentions: 4
Published: over 9 years ago

10.1093/gigascience/giaa110

Interpreting k-mer–based signatures for antibiotic resistance prediction
Cited by: 12
Author(s): Magali Jaillard, Mattia Palmieri, Alex van Belkum, Pierre Mahé
Software Mentions: 4
Published: almost 6 years ago

10.1001/jamanetworkopen.2018.6937

Machine Learning–Based Prediction of Clinical Outcomes for Children During Emergency Department Triage
Cited by: 150
Author(s): Tadahiro Goto, Carlos A. Camargo, Mohammad Kamal Faridi, Robert J. Freishtat, Kohei Hasegawa
Software Mentions: 4
Published: over 7 years ago

10.1111/jcmm.13941

Deciphering molecular properties of hypermutated gastrointestinal cancer
Cited by: 8
Author(s): Wangxiong Hu, Yanmei Yang, Weiting Ge, Shu Zheng
Software Mentions: 4
Published: almost 8 years ago

10.1136/gutjnl-2016-313681

A novel prognostic model for transplant-free survival in primary sclerosing cholangitis
Cited by: 74
Author(s): E M de Vries, Junfeng Wang, Kate D. Williamson, Mariska Leeflang, Kirsten Boonstra, Rinse K. Weersma, Ulrich Beuers, Roger W. Chapman, Ronald B. Geskus, Cyriel Y. Ponsioen
Software Mentions: 4
Published: about 9 years ago

10.3389/fpsyg.2018.00317

TIMSS 2011 Student and Teacher Predictors for Mathematics Achievement Explored and Identified via Elastic Net
Cited by: 16
Author(s): Jin Eun Yoo
Software Mentions: 4
Published: over 8 years ago

10.1523/ENEURO.0163-21.2021

Factors That Influence Career Choice among Different Populations of Neuroscience Trainees
Cited by: 8
Author(s): Lauren Ullrich, John R. Ogawa, Michelle Jones-London
Software Mentions: 4
Published: over 5 years ago

10.3389/fpls.2019.01570

Genetic Correlation, Genome-Wide Association and Genomic Prediction of Portable NIRS Predicted Carotenoids in Cassava Roots
Cited by: 18
Author(s): Ugochukwu N. Ikeogu, Deniz Akdemir, Wolfe, Uche Godfrey Okeke, Chinedozi Amaefula, Jean‐Luc Jannink, Chiedozie Egesi
Software Mentions: 4
Published: over 6 years ago

10.1038/s41598-021-86921-9

Systematic prediction of drug resistance caused by transporter genes in cancer cells
Cited by: 4
Author(s): Yao Shen, Zhipeng Yan
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-017-10324-y

Automated Classification of Benign and Malignant Proliferative Breast Lesions
Cited by: 18
Author(s): Evani Radiya-Dixit, David C. Zhu, Andrew H. Beck
Software Mentions: 4
Published: almost 9 years ago

10.1038/s41598-017-12166-0

A Whole Blood Molecular Signature for Acute Myocardial Infarction
Cited by: 47
Author(s): Evan D. Muse, Eric R. Kramer, Haiying Wang, Paddy Barrett, Fereshteh Parviz, M. A. Novotny, Roger S. Lasken, Tim Jatkoe, Glenn Oliveira, Hongfan Peng, Jerry Lu, Mark C. Connelly, K Schilling, Chandra Rao, Ali Torkamani, Eric J. Topol
Software Mentions: 4
Published: almost 9 years ago

10.1128/mSphere.00484-20

Root Microbiome Modulates Plant Growth Promotion Induced by Low Doses of Glyphosate
Cited by: 16
Author(s): Darío X. Ramírez-Villacís, Omri M. Finkel, Isai Salas-González, Connor R. Fitzpatrick, Jeffery L. Dangl, Corbin D. Jones, Antonio León-Reyes
Software Mentions: 4
Published: almost 6 years ago

10.1038/s41598-019-45283-z

Hepatic tumor classification using texture and topology analysis of non-contrast-enhanced three-dimensional T1-weighted MR images with a radiomics approach
Cited by: 61
Author(s): Asuka Oyama, Yasuaki Hiraoka, Ippei Obayashi, Yusuke Saikawa, Shigeru Furui, Kenshiro Shiraishi, Shinobu Kumagai, Tatsuya Hayashi, J. Kotoku
Software Mentions: 4
Published: about 7 years ago