Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/s13072-021-00418-3

https://doi.org/10.1186/s13072-021-00418-3

Single-nuclei chromatin profiling of ventral midbrain reveals cell identity transcription factors and cell-type-specific gene regulatory variation

Cited by: 5
Author(s): Yujuan Gui, Kamil Grzyb, Mélanie Thomas, Jochen Ohnmacht, Pierre Garcia, Manuel Buttini, Alexander Skupin, Thomas Sauter, Lasse Sinkkonen
Published: over 3 years ago

Software Mentions 4

bioconductor: ArrayExpress
Access the ArrayExpress Collection at EMBL-EBI Biostudies and build Bioconductor data structures: ExpressionSet, AffyBatch, NChannelSet
Papers that mentioned: 1,962
cran: Seurat
Tools for Single Cell Genomics
Papers that mentioned: 1,512
cran: Signac
Analysis of Single-Cell Chromatin Data
Papers that mentioned: 24
pypi: MACS2
Model Based Analysis for ChIP-Seq data
Papers that mentioned: 1,203