10.1186/s12862-017-1087-8

Rethinking the evolution of eukaryotic metabolism: novel cellular partitioning of enzymes in stramenopiles links serine biosynthesis to glycolysis in mitochondria
Cited by: 21
Author(s): Melania Abrahamian, Meenakshi S. Kagda, Audrey M. V. Ah‐Fong, Howard S. Judelson
Software Mentions: 4
Published: over 8 years ago

10.1186/s13059-019-1785-1

Contrasting patterns of longitudinal population dynamics and antimicrobial resistance mechanisms in two priority bacterial pathogens over 7 years in a single center
Cited by: 21
Author(s): Matthew J. Ellington, Eva Heinz, Alexander M. Wailan, Matthew J. Dorman, Marcus C. de Goffau, Amy K. Cain, Sonal P. Henson, Nicholas Gleadall, Christine J. Boinett, Gordon Dougan, Nicholas M. Brown, Neil Woodford, Julian Parkhill, M. Estée Török, Sharon J. Peacock, Nicholas R. Thomson
Software Mentions: 4
Published: almost 7 years ago

10.3390/cells10061291

Innate and Adaptive Immune Genes Associated with MERS-CoV Infection in Dromedaries
Cited by: 6
Author(s): Sara Lado, Jean P. Elbers, Martin Plášil, Tom Loney, Pia Weidinger, Jeremy V. Camp, Jolanta Kolodziejek, Ján Futas, Dafalla A. Kannan, Pablo Orozco‐terWengel, Petr Hořín, Norbert Nowotny, Pamela A. Burger
Software Mentions: 4
Published: about 5 years ago

10.1002/ece3.7818

Permafrost condition determines plant community composition and community‐level foliar functional traits in a boreal peatland
Cited by: 8
Author(s): Katherine M. Standen, Jennifer L. Baltzer
Software Mentions: 4
Published: about 5 years ago

10.1186/s12862-017-1103-z

De novo assembling and primary analysis of genome and transcriptome of gray whale Eschrichtius robustus
Cited by: 11
Author(s): Alexey Moskalev, Anna V. Kudryavtseva, Alexander S. Graphodatsky, Violetta R. Beklemisheva, Natalia A. Serdyukova, Konstantin V. Krutovsky, Vadim V. Sharov, Ivan V. Kulakovskiy, Andrey S. Lando, Artem S. Kasianov, Dmitry A. Kuzmin, Yuliya A. Putintseva, Sergey Feranchuk, Mikhail Shaposhnikov, Vadim E. Fraifeld, Dmitri Toren, А. В. Снежкина, Vasily Sitnik
Software Mentions: 4
Published: over 8 years ago

10.7554/eLife.46566

The transcription factor odd-paired regulates temporal identity in transit-amplifying neural progenitors via an incoherent feed-forward loop
Cited by: 29
Author(s): Merve Deniz Abdusselamoglu, Elif Eroğlu, Thomas R Burkard, Juergen A. Knoblich
Software Mentions: 4
Published: about 7 years ago

10.1186/1471-2105-15-198

CIRCUS: a package for Circos display of structural genome variations from paired-end and mate-pair sequencing data
Cited by: 35
Author(s): Delphine Naquin, Yves d’Aubenton-Carafa, Claude Thermes, Maud Silvain
Software Mentions: 4
Published: about 12 years ago

10.1128/mSystems.00783-19

Space Is More Important than Season when Shaping Soil Microbial Communities at a Large Spatial Scale
Cited by: 61
Author(s): Kaoping Zhang, Manuel Delgado‐Baquerizo, Yong‐Guan Zhu, Haiyan Chu
Software Mentions: 4
Published: about 6 years ago

10.1128/mSystems.00098-20

Ecological Assembly Processes Are Coordinated between Bacterial and Viral Communities in Fractured Shale Ecosystems
Cited by: 12
Author(s): Robert Danczak, Rebecca A. Daly, Mikayla A. Borton, James C. Stegen, Simon Roux, Kelly Wrighton, Michael J. Wilkins
Software Mentions: 4
Published: over 6 years ago

10.1038/s41598-020-68212-x

Genomic imprinting analyses identify maternal effects as a cause of phenotypic variability in type 1 diabetes and rheumatoid arthritis
Cited by: 11
Author(s): Inga Blunk, Hauke Thomsen, Norbert Reinsch, M. Mayer, Asta Försti, Jan Sundquist, Kristina Sundquist, Kari Hemminki
Software Mentions: 4
Published: about 6 years ago

10.1128/mSystems.00522-20

Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants
Cited by: 69
Author(s): John Leech, Raúl Cabrera‐Rubio, Aaron M. Walsh, Guerrino Macori, Calum J. Walsh, Wiley Barton, Laura Finnegan, Fiona Crispie, Órla O’Sullivan, Marcus J. Claesson, Paul D. Cotter
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-019-39733-x

HER2 and p95HER2 differentially regulate miRNA expression in MCF-7 breast cancer cells and downregulate MYB proteins through miR-221/222 and miR-503
Cited by: 15
Author(s): Andrej Gorbatenko, Rolf Søkilde, Ester E. Sørensen, Inga Newie, Helena Persson, Beatriz Morancho, Joaquı́n Arribas, Thomas Litman, Carlos Rovira, Stine Falsig Pedersen
Software Mentions: 4
Published: over 7 years ago

10.1128/mSystems.01048-20

Essential Amino Acid Enrichment and Positive Selection Highlight Endosymbiont's Role in a Global Virus-Vectoring Pest
Cited by: 3
Author(s): Kaitlyn N. Myers, Daniel Conn, Amanda M. V. Brown
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pcbi.1007988

Classification and phylogeny for the annotation of novel eukaryotic GNAT acetyltransferases
Cited by: 7
Author(s): Bojan Krtenic, Adrian Drazic, Thomas Arnesen, Nathalie Reuter
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pcbi.1006090

DIVERSITY in binding, regulation, and evolution revealed from high-throughput ChIP
Cited by: 12
Author(s): Sneha Mitra, Anushua Biswas, Leelavati Narlikar
Software Mentions: 4
Published: over 8 years ago

10.1186/s12863-019-0790-4

Transcriptome, physiological and biochemical analysis of Triarrhena sacchariflora in response to flooding stress
Cited by: 17
Author(s): Jia Wang, Hao Sun, Jiajin Sheng, Surong Jin, Fangjian Zhou, Zhongli Hu, Youxiang Diao
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pbio.1002146

The Structure of an NDR/LATS Kinase–Mob Complex Reveals a Novel Kinase–Coactivator System and Substrate Docking Mechanism
Cited by: 45
Author(s): Gergő Gógl, Kyle D. Schneider, Brian J. Yeh, Alam Nashida, Alex N Nguyen Ba, Alan M. Moses, Csaba Hetényi, Attila Reményi, Eric L. Weiss
Software Mentions: 4
Published: about 11 years ago

10.18632/oncotarget.20940

<i>PTEN</i> loss is associated with prostate cancer recurrence and alterations in tumor DNA methylation profiles
Cited by: 29
Author(s): Milan S. Geybels, Min Fang, Jonathan L. Wright, Xiaoyu Qu, Marina Bibikova, Brandy Klotzle, Jie Fan, Ziding Feng, Elaine A. Ostrander, Peter S. Nelson, Janet L. Stanford
Software Mentions: 4
Published: almost 9 years ago

10.1038/s41598-019-40897-9

Extensive epigenetic and transcriptomic variability between genetically identical human B-lymphoblastoid cells with implications in pharmacogenomics research
Cited by: 17
Author(s): Lilla Ozgyin, Attila Horváth, Zsuzsanna Hevessy, Bálint László Bálint
Software Mentions: 4
Published: over 7 years ago

10.1038/s41426-018-0195-x

Experimental transmission of Zika virus by <i>Aedes japonicus japonicus</i> from southwestern Germany
Cited by: 32
Author(s): Stéphanie Jansen, Anna Heitmann, Renke Lühken, Hanna Jöst, Michelle Helms, Olli Vapalahti, Jonas Schmidt‐Chanasit, Egbert Tannich
Software Mentions: 4
Published: over 7 years ago

10.18632/oncotarget.14303

Pan-organ transcriptome variation across 21 cancer types
Cited by: 6
Author(s): Wangxiong Hu, Yanmei Yang, Xiaofen Li, Shu Zheng
Software Mentions: 4
Published: over 9 years ago

10.1038/s41598-019-43591-y

Apoptotic endothelial cells release small extracellular vesicles loaded with immunostimulatory viral-like RNAs
Cited by: 43
Author(s): Marie-Pierre Hardy, Éric Audemard, Francis Migneault, Albert Feghaly, Sylvie Brochu, Patrick Gendron, Éric Boilard, François Major, Mélanie Dieudé, Marie‐Josée Hébert, Claude Perreault
Software Mentions: 4
Published: about 7 years ago

10.1155/2020/8291036

A Novel Signature Based on mTORC1 Pathway in Hepatocellular Carcinoma
Cited by: 4
Author(s): Zhuomao Mo, Shuqiao Zhang, Shijun Zhang
Software Mentions: 4
Published: almost 6 years ago

10.7554/eLife.53459

The histone modification reader ZCWPW1 links histone methylation to PRDM9-induced double-strand break repair
Cited by: 28
Author(s): Tao Huang, Shenli Yuan, Lei Gao, Mengjing Li, Xiaochen Yu, Jianhong Zhan, Yingying Yin, Chao Liu, Chuanxin Zhang, Gang Lü, Wei Li, Jiang Liu, Zi‐Jiang Chen, Hongbin Liu
Software Mentions: 4
Published: over 6 years ago

10.1038/s41396-020-0686-3

Ecological succession in the vaginal microbiota during pregnancy and birth
Cited by: 39
Author(s): Morten Arendt Rasmussen, Jonathan Thorsen, Maria Gloria Domínguez-Bello, Martin J. Blaser, Martin Steen Mortensen, Asker Brejnrod, Samir A. Shah, Mathis Hjort Hjelmsø, Jenni Lehtimäki, Urvish Trivedi, Hans Bisgaard, Søren J. Sørensen, Jakob Stokholm
Software Mentions: 4
Published: about 6 years ago

10.1038/s41396-019-0581-y

Controlled sampling of ribosomally active protistan diversity in sediment-surface layers identifies putative players in the marine carbon sink
Cited by: 14
Author(s): Raquel Rodríguez‐Martínez, Guy Leonard, David S. Milner, Sebastian Sudek, Mike Conway, Karen Moore, Theresa Hudson, Frédéric Mahe, Patrick J. Keeling, Alyson E. Santoro, Alexandra Z. Worden, Thomas A. Richards
Software Mentions: 4
Published: over 6 years ago

10.1186/s12864-017-3797-0

Differentially expressed genes from RNA-Seq and functional enrichment results are affected by the choice of single-end versus paired-end reads and stranded versus non-stranded protocols
Cited by: 20
Author(s): Susan M. Corley, Karen L. MacKenzie, Annemiek Beverdam, Louise F. Roddam, Marc R. Wilkins
Software Mentions: 4
Published: about 9 years ago

10.2196/jmir.6240

Impact of Predicting Health Care Utilization Via Web Search Behavior: A Data-Driven Analysis
Cited by: 33
Author(s): Vibhu Agarwal, L. Zhang, Josh Zhu, Shiyuan Fang, Tim Cheng, Chloe Hong, Nigam H. Shah
Software Mentions: 4
Published: almost 10 years ago

10.3390/ijms22041632

Construction and Validation of a Prognostic Gene-Based Model for Overall Survival Prediction in Hepatocellular Carcinoma Using an Integrated Statistical and Bioinformatic Approach
Cited by: 8
Author(s): Eskezeia Y. Dessie, Siang-Jyun Tu, Hui-Shan Chiang, Jeffrey J. P. Tsai, Ya‐Sian Chang, Jan-Gowth Chang, Ka-Lok Ng
Software Mentions: 4
Published: over 5 years ago

10.1186/s12864-017-4359-1

A next generation sequencing based approach to identify extracellular vesicle mediated mRNA transfers between cells
Cited by: 19
Author(s): Jialiang Yang, Jacob Hagen, Kalyani V. P. Guntur, Kimaada Allette, Sarah Schuyler, Jyoti Ranjan, Francesca Petralia, Stéphane Gesta, Robert Sebra, Milind Mahajan, Bin Zhang, Jun Zhu, Sander M. Houten, Andrew Kasarskis, Vivek K. Vishnudas, Viatcheslav R. Akmaev, Rangaprasad Sarangarajan, Niven R. Narain, Eric E. Schadt, Carmen Argmann, Zhidong Tu
Software Mentions: 4
Published: over 8 years ago

10.1038/s41598-019-47363-6

Whole transcriptome analysis reveals correlation of long noncoding RNA ZEB1-AS1 with invasive profile in melanoma
Cited by: 20
Author(s): Ádamo Davi Diógenes Siena, Jéssica Rodrigues Plaça, Luíza Ferreira de Araújo, Isabela Ichihara de Barros, Kamila Chagas Peronni, Greice Andreotti de Molfetta, Carlos Alberto Oliveira de Biagi, Enilza Maria Espreáfico, Josane F. Sousa, Wilson A. Silva
Software Mentions: 4
Published: about 7 years ago

10.3390/ijms22010135

Circulating tRNA Fragments as a Novel Biomarker Class to Distinguish Acute Stroke Subtypes
Cited by: 13
Author(s): Thủy Nguyễn, M. Leontien van der Bent, Marieke J.H. Wermer, Ido R. van den Wijngaard, Erik W. van Zwet, Bas de Groot, Paul H.A. Quax, Nyika D. Kruyt, A. Yaël Nossent
Software Mentions: 4
Published: over 5 years ago

10.1038/s41396-020-0635-1

Targeted assemblies of cas1 suggest CRISPR-Cas’s response to soil warming
Cited by: 6
Author(s): Ruonan Wu, Benli Chai, James R. Cole, Santosh Gunturu, Xue Guo, Renmao Tian, Ji‐Dong Gu, Jizhong Zhou, James M. Tiedje
Software Mentions: 4
Published: over 6 years ago

10.1002/edm2.140

Prevalence of admission plasma glucose in 'diabetes' or 'at risk' ranges in hospital emergencies with no prior diagnosis of diabetes by gender, age and ethnicity
Cited by: 5
Author(s): Sandip Ghosh, Susan E. Manley, Peter Nightingale, John A. Williams, Radhika Susarla, Irene Alonso‐Perez, I M Stratton, Georgios V. Gkoutos, Jonathan Webber, Stephen Denis Luzio, Wasim Hanif, Graham Roberts
Software Mentions: 4
Published: about 6 years ago

10.1038/s41598-019-49915-2

RNAseq analysis reveals drought-responsive molecular pathways with candidate genes and putative molecular markers in root tissue of wheat
Cited by: 52
Author(s): Mir Asif Iquebal, Pradeep Sharma, Rahul Singh Jasrotia, Sarika Jaiswal, Amandeep Kaur, Monika Saroha, U. B. Angadi, Sonia Sheoran, Rajender Singh, Gyanendra Singh, Anil Rai, Ruchi Tiwari, Dinesh Kumar
Software Mentions: 4
Published: almost 7 years ago

10.1038/s41598-020-70368-5

Transcriptomic analysis delineates potential signature genes and miRNAs associated with the pathogenesis of asthma
Cited by: 16
Author(s): Prithvi Singh, Archana Sharma, Jha R, Shweta Arora, Rafiq Ahmad, Arshad Husain Rahmani, Saleh A. Almatroodi, Ravins Dohare, Mansoor Ali Syed
Software Mentions: 4
Published: about 6 years ago

10.1186/s12940-020-00608-8

Persistent organic pollutants, pre-pregnancy use of combined oral contraceptives, age, and time-to-pregnancy in the SELMA cohort
Cited by: 13
Author(s): Richelle D. Björvang, Chris Gennings, Ping Lin, Ghada Hussein, Hannu Kiviranta, Panu Rantakokko, Päivi Ruokojärvi, Christian Lindh, Pauliina Damdimopoulou, Carl‐Gustaf Bornehag
Software Mentions: 4
Published: about 6 years ago

10.1186/s13046-019-1228-6

Extracellular lipid loading augments hypoxic paracrine signaling and promotes glioma angiogenesis and macrophage infiltration
Cited by: 18
Author(s): Svenja Offer, Julien A. Menard, Julio Enríquez Pérez, Kelin Gonçalves de Oliveira, Vineesh Indira Chandran, Martin Johansson, Anna Bång-Rudenstam, Peter Siesjö, Anna Ebbesson, Ingrid Hedenfalk, Pia C. Sundgren, Anna Darabi, Mattias Belting
Software Mentions: 4
Published: about 7 years ago

10.1186/s12864-020-07327-x

Gene expression patterns of red sea urchins (Mesocentrotus franciscanus) exposed to different combinations of temperature and pCO2 during early development
Cited by: 5
Author(s): Juliet M. Wong, Gretchen E. Hofmann
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-019-52841-y

Prospective validation in epithelial tumors of a gene expression predictor of liver metastasis derived from uveal melanoma
Cited by: 3
Author(s): Petros Tsantoulis, Mauro Delorenzi, Ivan Bièche, Sophie Vacher, Pascale Mariani, Nathalie Cassoux, Alexandre Houy, Marc‐Henri Stern, Sergio Román-Román, Pierre‐Yves Dietrich, Arnaud Roth, Wulfran Cacheux
Software Mentions: 4
Published: over 6 years ago

10.1186/s13046-021-02122-2

Mutant NPM1-regulated lncRNA HOTAIRM1 promotes leukemia cell autophagy and proliferation by targeting EGR1 and ULK3
Cited by: 19
Author(s): Yipei Jing, Xueke Jiang, Lei Li, Meixi Peng, Jun Ren, Qiaoling Xiao, Tao Yao, Yonghong Tao, Junpeng Huang, Lu Wang, Yuting Tang, Zailin Yang, Yang Zhou, Ling Zhang
Software Mentions: 4
Published: almost 5 years ago

10.1002/jev2.12047

Single‐vesicle imaging and co‐localization analysis for tetraspanin profiling of individual extracellular vesicles
Cited by: 38
Author(s): Chul‐Hi Han, Hyejin Kang, Johan Yi, Minsu Kang, Hyunjin Lee, Yongmin Kwon, Jae-Hun Jung, Jingeol Lee, Jaesung Park
Software Mentions: 4
Published: over 5 years ago

10.1186/s12864-016-2694-2

RNA-Seq following PCR-based sorting reveals rare cell transcriptional signatures
Cited by: 21
Author(s): Maurizio Pellegrino, Adam Sciambi, Jamie Yates, Joshua D. Mast, Charles Silver, Dennis J. Eastburn
Software Mentions: 4
Published: about 10 years ago

10.7554/eLife.31437

The formation of the light-sensing compartment of cone photoreceptors coincides with a transcriptional switch
Cited by: 29
Author(s): Janine M Daum, Özkan Keles, Sjoerd J.B. Holwerda, Hubertus Kohler, Filippo M. Rijli, Michael Stadler, Botond Roska
Software Mentions: 4
Published: almost 9 years ago

10.7554/eLife.66128

High social status males experience accelerated epigenetic aging in wild baboons
Cited by: 48
Author(s): Jordan A Anderson, Rachel A Johnston, Amanda J. Lea, Fernando A. Campos, Tawni Voyles, Mercy Akinyi, Susan C. Alberts, Elizabeth A. Archie, Jenny Tung
Software Mentions: 4
Published: over 5 years ago

10.7554/eLife.69808

Common host variation drives malaria parasite fitness in healthy human red cells
Cited by: 15
Author(s): Emily R. Ebel, Frans A. Kuypers, Carrie Lin, Dmitri A. Petrov, Elizabeth S. Egan
Software Mentions: 4
Published: almost 5 years ago

10.1155/2021/5554342

Development and Validation of a Robust Immune-Related Prognostic Signature for Gastric Cancer
Cited by: 7
Author(s): Junyu Huo, Liqun Wu, Yunjin Zang
Software Mentions: 4
Published: over 5 years ago

10.1111/jcmm.15393

DNA methylation profiling to predict recurrence risk in stage Ι lung adenocarcinoma: Development and validation of a nomogram to clinical management
Cited by: 12
Author(s): Xianxiong Ma, Jiancheng Cheng, Peng Zhao, Lei Li, Kaixiong Tao, Hengyu Chen
Software Mentions: 4
Published: about 6 years ago

10.7150/ijms.49576

Prognosis Prediction for Colorectal Cancer Patients: A Risk Score Based on The Metabolic-Related Genes
Cited by: 1
Author(s): Yongqu Lu, Xin Zhou, Zhenzhen Liu, Wendong Wang, Siyi Lu, Wei Fu
Software Mentions: 4
Published: over 5 years ago

10.3390/jof7050335

Effect of Isolation Conditions on Diversity of Endolichenic Fungal Communities from a Foliose Lichen, Parmotrema tinctorum
Cited by: 10
Author(s): Ji Ho Yang, Seung‐Yoon Oh, Wonyong Kim, Jung-Jae Woo, Hyeonjae Kim, Jae‐Seoun Hur
Software Mentions: 4
Published: over 5 years ago

10.1084/jem.20201189

αβγδ T cells play a vital role in fetal human skin development and immunity
Cited by: 17
Author(s): René Reitermaier, Thomas Krausgruber, Nikolaus Fortelny, Tanya Ayub, Pablo A. Vieyra‐Garcia, Philip Kienzl, Peter Wolf, Anke Scharrer, Christian Fiala, Marita Kölz, Manuela Hiess, Martin Vierhapper, Christopher Schuster, Andreas Spittler, Christof Worda, Wolfgang Weninger, Christoph Bock, Wolfgang Eppel, Adelheid Elbe‐Bürger
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-020-59934-z

Immunosuppressive effect and global dysregulation of blood transcriptome in response to psychosocial stress in vervet monkeys (Chlorocebus sabaeus)
Cited by: 2
Author(s): Anna J. Jasinska, Ivona Pandrea, Tianyu He, Cassandra Benjamin, Maurice Newton, Jen‐Chieh Lee, Nelson B. Freimer, Giovanni Coppola, J. David Jentsch
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pone.0047500

Differences in Soil Fungal Communities between European Beech (Fagus sylvatica L.) Dominated Forests Are Related to Soil and Understory Vegetation
Cited by: 88
Author(s): Tesfaye Wubet, Sabina Christ, Ingo Schöning, Steffen Boch, Melanie Gawlich, Beatrix Schnabel, Markus Fischer, François Buscot
Software Mentions: 4
Published: almost 14 years ago

10.7189/jogh.08-010804

The national and subnational prevalence of cataract and cataract blindness in China: a systematic review and meta-analysis.
Cited by: 49
Author(s): Peige Song, He Wang, Evropi Τheodoratou, Kit Yee Chan, Igor Rudan
Software Mentions: 4
Published: about 8 years ago

10.1007/s11356-019-06639-0

Determination of nest occupation and breeding effect of the white stork by human-mediated landscape in Western Poland
Cited by: 22
Author(s): Joanna T. Białas, Łukasz Dylewski, Marcin Tobółka
Software Mentions: 4
Published: over 6 years ago

10.1186/s12916-018-1039-1

Performance of InSilicoVA for assigning causes of death to verbal autopsies: multisite validation study using clinical diagnostic gold standards
Cited by: 19
Author(s): Abraham D. Flaxman, Jonathan Joseph, Christopher J L Murray, Ian Riley, Alan D. López
Software Mentions: 4
Published: over 8 years ago

10.1186/s12864-019-6384-8

Chicken adaptive response to low energy diet: main role of the hypothalamic lipid metabolism revealed by a phenotypic and multi-tissue transcriptomic approach
Cited by: 6
Author(s): Frédéric Jehl, Colette Désert, Christophe Klopp, M. Brenet, Andrea Rau, Sophie Leroux, Morgane Boutin, Laëtitia Lagoutte, Kévin Muret, Yuna Blum, Diane Esquerré, David Gourichon, Thierry Burlot, Anne Collin, Frédérique Pitel, Alexandre Bénani, Tatiana Zerjal, Sandrine Lagarrigue
Software Mentions: 4
Published: over 6 years ago

10.3390/microorganisms9081673

Variation in Sodic Soil Bacterial Communities Associated with Different Alkali Vegetation Types
Cited by: 2
Author(s): Andrea K. Borsodi, Márton Mucsi, Gergely Krett, Attila Szabó, Tamás Felföldi, Tibor Szili‐Kovács
Software Mentions: 4
Published: about 5 years ago

10.7554/eLife.66662

Homo-oligomerization of the human adenosine A2A receptor is driven by the intrinsically disordered C-terminus
Cited by: 9
Author(s): Khanh D. Nguyen, Michael Vigers, Eric Sefah, Susanna Seppälä, Jennifer Paige Hoover, Nicole S. Schonenbach, Blake Mertz, Michelle O’Malley, Songi Han
Software Mentions: 4
Published: about 5 years ago

10.1038/s41598-020-61177-x

RNA-seq analysis reveals TRPC genes to impact an unexpected number of metabolic and regulatory pathways
Cited by: 10
Author(s): Karina Formoso, Sebastián Susperreguy, Marc Freichel, Lutz Birnbaumer
Software Mentions: 4
Published: over 6 years ago

10.1186/s12864-016-2397-8

Transcriptome analysis reveals differentially expressed genes associated with germ cell and gonad development in the Southern bluefin tuna (Thunnus maccoyii)
Cited by: 38
Author(s): Ido Bar, Scott F. Cummins, Abigail Elizur
Software Mentions: 4
Published: over 10 years ago

10.7150/ijms.50491

Multi‐omics analysis of tumor mutational burden combined with prognostic assessment in epithelial ovarian cancer based on TCGA database
Cited by: 18
Author(s): Jinhui Liu, Wei Xu, Siyue Li, Rui Sun, Wenjun Cheng
Software Mentions: 4
Published: over 6 years ago

10.1038/s41598-019-52478-x

Ligand-Induced Conformational Dynamics of A Tyramine Receptor from Sitophilus oryzae
Cited by: 14
Author(s): Mac Kevin E. Braza, Jerrica Dominique N. Gazmen, Eizadora T. Yu, Ricky B. Nellas
Software Mentions: 4
Published: almost 7 years ago

10.1038/s41598-020-66309-x

Comparative targeting analysis of KLF1, BCL11A, and HBG1/2 in CD34+ HSPCs by CRISPR/Cas9 for the induction of fetal hemoglobin
Cited by: 35
Author(s): Andrés Lamsfus‐Calle, Alberto Daniel‐Moreno, Justin S. Antony, Thomas Epting, Lukas Heumos, Praveen Baskaran, Jakob Admard, Nicolas Casadei, Ngadhnjim Latifi, Darina M. Siegmund, Michael Kormann, Rupert Handgretinger, Markus Mezger
Software Mentions: 4
Published: about 6 years ago

10.3389/fonc.2021.737867

Genomic Instability-Related LncRNA Signature Predicts the Prognosis and Highlights LINC01614 Is a Tumor Microenvironment-Related Oncogenic lncRNA of Papillary Thyroid Carcinoma
Cited by: 6
Author(s): Xubin Dong, Cong Jin, Danxiang Chen, Yizuo Chen, Zhiqiang Ye, Xiaohua Zhang, Xiaoli Huang, Wei Zhang, Di Gu
Software Mentions: 4
Published: almost 5 years ago

10.3389/fonc.2021.666199

Prognostic Implication of a Novel Metabolism-Related Gene Signature in Hepatocellular Carcinoma
Cited by: 15
Author(s): Chaoyan Yuan, Mengqin Yuan, Chen Ming-qian, Jinhua Ouyang, Wei Tan, Fangfang Dai, Dongyong Yang, Shiyi Liu, Y. Zheng, Chunqin Zhou, Yanxiang Cheng
Software Mentions: 4
Published: about 5 years ago

10.1016/j.devcel.2020.09.002

Combinatorial Action of Temporally Segregated Transcription Factors
Cited by: 38
Author(s): Julien Charest, Thomas Daniele, Jingkui Wang, Aleksandr Bykov, Ariane Mandlbauer, Mila Asparuhova, Josef Röhsner, Paula Gutiérrez-Pérez, Luisa Cochella
Software Mentions: 4
Published: almost 6 years ago

10.1038/s41366-018-0149-3

Maternal pre-pregnancy obesity and health care utilization and costs in the offspring
Cited by: 14
Author(s): Stefan Kuhle, Adam Muir, Christy Woolcott, Mary Brown, Sarah D. McDonald, Mohamed Abdolell, Linda Dodds
Software Mentions: 4
Published: about 8 years ago

10.3390/molecules25245934

CGMD Platform: Integrated Web Servers for the Preparation, Running, and Analysis of Coarse-Grained Molecular Dynamics Simulations
Cited by: 13
Author(s): Alessandro Marchetto, Zeineb Si Chaib, Claudia Rossi, Rui P. P. L. Ribeiro, Sergio Pantano, Giulia Rossetti, Alejandro Giorgetti
Software Mentions: 4
Published: over 5 years ago

10.3389/fonc.2020.01410

Machine Learning-Based Radiomics Nomogram Using Magnetic Resonance Images for Prediction of Neoadjuvant Chemotherapy Efficacy in Breast Cancer Patients
Cited by: 23
Author(s): Shujun Chen, Zhenyu Shu, Yongfeng Li, Bin Chen, Lan Tang, Wenju Mo, Guoliang Shao, Feng Shao
Software Mentions: 4
Published: almost 6 years ago

10.3389/fonc.2021.725922

Radiomic Evaluations of the Diagnostic Performance of DM, DBT, DCE MRI, DWI, and Their Combination for the Diagnosisof Breast Cancer
Cited by: 4
Author(s): Shuxian Niu, Xiaoyu Wang, Nannan Zhao, Guanyu Liu, Yangyang Kan, Yue Dong, Enuo Cui, Yahong Luo, Tao Yu, Xiran Jiang
Software Mentions: 4
Published: almost 5 years ago

10.3389/fonc.2020.01211

Exploration the Significance of a Novel Immune-Related Gene Signature in Prognosis and Immune Microenvironment of Breast Cancer
Cited by: 15
Author(s): Yajie Zhao, Chunrui Pu, Zhenzhen Liu
Software Mentions: 4
Published: about 6 years ago

10.1038/s41598-020-71889-9

Gene expression is stable in a complete CIB1 knockout keratinocyte model
Cited by: 2
Author(s): Elias Imahorn, Magomet Aushev, Stefan Herms, Per Hoffmann, Sven Cichon, Julia Reichelt, Peter Itin, Bettina Burger
Software Mentions: 4
Published: almost 6 years ago

10.3389/fonc.2020.616263

Immunohistochemical Signature Add Prognostic Value in Patients With Early and Intermediate Hepatocellular Carcinoma Underwent Curative Liver Resection
Cited by: 2
Author(s): Yan Bai, Yuane Lian, Xiaoping Chen, Jiayi Wu, Jianlin Lai, Funan Qiu, Songqiang Zhou, Zijing Zhu, Yuan Tian, Yaodong Wang, Yinghong Yang, Mao-Lin Yan
Software Mentions: 4
Published: over 5 years ago

10.3389/fonc.2021.665276

Identification of Prognostic Signature and Gliclazide as Candidate Drugs in Lung Adenocarcinoma
Cited by: 15
Author(s): Cheng Yang, Kezuo Hou, Yizhe Wang, Chen Yang, Xueying Zheng, Jianfei Qi, Bowen Yang, Shiying Tang, Xu Han, Dongyao Shi, Ximing Wang, Yunpeng Liu, Xuejun Hu, Xiaofang Che
Software Mentions: 4
Published: about 5 years ago

10.3389/fneur.2021.706576

Extrahippocampal Radiomics Analysis Can Potentially Identify Laterality in Patients With MRI-Negative Temporal Lobe Epilepsy
Cited by: 3
Author(s): E-Nae Cheong, Ji Eun Park, Da Eun Jung, Woo Hyun Shim
Software Mentions: 4
Published: about 5 years ago

10.3389/fmolb.2021.670241

Autophagy-Related Gene Pairs Signature for the Prognosis of Hepatocellular Carcinoma
Cited by: 5
Author(s): Yiming Luo, Furong Liu, Shenqi Han, Yongqiang Qi, Xinsheng Hu, Chenyang Zhou, Huifang Liang, Zhiwei Zhang
Software Mentions: 4
Published: about 5 years ago

10.1186/s13072-021-00395-7

Loss of EZH2-like or SU(VAR)3–9-like proteins causes simultaneous perturbations in H3K27 and H3K9 tri-methylation and associated developmental defects in the fungus Podospora anserina
Cited by: 13
Author(s): Florian Carlier, M. Li, Laetitia Maroc, Robert Debuchy, Charbel Souaid, Daan Noordermeer, Pierre Grognet, Fabienne Malagnac
Software Mentions: 4
Published: over 5 years ago

10.3389/fmolb.2021.632950

Comprehensive Metabolomics Identified the Prominent Role of Glycerophospholipid Metabolism in Coronary Artery Disease Progression
Cited by: 10
Author(s): Hui Chen, Zixian Wang, Min Qin, Bin Zhang, Li Jen Lin, Qin Ma, Chen Liu, Xiaoping Chen, Hanping Li, Wen‐Ter Lai, Shilong Zhong
Software Mentions: 4
Published: over 5 years ago

10.1007/s10840-019-00596-x

Needle aspiration for treating iatrogenic pneumothorax after cardiac electronic device implantation: a pilot study
Cited by: 6
Author(s): Dominika Domokos, András Szabó, Gyöngyvér Bánhegyi, Balázs Polgár, Zsolt Bári, Péter Bógyi, István Marczell, Leticia Papp, Róbert Gábor Kiss, Gabor Z. Duray, Béla Merkely, István Hizoh
Software Mentions: 4
Published: about 7 years ago

10.3389/fmolb.2020.571641

Identification of a Novel Tumor Microenvironment–Associated Eight-Gene Signature for Prognosis Prediction in Lung Adenocarcinoma
Cited by: 36
Author(s): Chi Ma, Huan Luo, Jing Cao, Xiangyu Zheng, Jinjun Zhang, Yanmin Zhang, Zongqiang Fu
Software Mentions: 4
Published: almost 6 years ago

10.3389/fmolb.2020.581354

A Prognostic Model of 15 Immune-Related Gene Pairs Associated With Tumor Mutation Burden for Hepatocellular Carcinoma
Cited by: 28
Author(s): Junyu Huo, Liqun Wu, Yunjin Zang
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-021-97306-3

Differentially expressed genes in the femur cartilage transcriptome clarify the understanding of femoral head separation in chickens
Cited by: 3
Author(s): Ludmila Mudri Hul, A. M. G. Ibelli, Igor Ricardo Savoldi, Débora Ester Petry Marcelino, Lana Teixeira Fernandes, J. O. Peixoto, Maurício Egídio Cantão, R. H. Higa, P. F. Giachetto, Luiz Lehmann Coutinho, Mônica Corrêa Ledur
Software Mentions: 4
Published: almost 5 years ago

10.1099/jmm.0.001256

Comparing DADA2 and OTU clustering approaches in studying the bacterial communities of atopic dermatitis
Cited by: 20
Author(s): Christopher J. Barnes, L. Rasmussen, Maria E. Asplund, Steen Wilhelm Knudsen, Maja‐Lisa Clausen, Tove Agner, Anders J. Hansen
Software Mentions: 4
Published: almost 6 years ago

10.3390/ijerph16111981

Development of a WebGIS-Based Analysis Tool for Human Health Protection from the Impacts of Prescribed Fire Smoke in Southeastern USA
Cited by: 7
Author(s): Yongtao Hu, Ha Ai, M. Talat Odman, A. Vaidyanathan, Armistead G. Russell
Software Mentions: 4
Published: about 7 years ago

10.1186/s13072-018-0252-7

Global distribution of DNA hydroxymethylation and DNA methylation in chronic lymphocytic leukemia
Cited by: 14
Author(s): Sara Wernig-Zorc, Mukesh Yadav, Pradeep Kumar Kopparapu, Mats Bemark, Hallgerður Lind Kristjánsdóttir, Per‐Ola Andersson, Chandrasekhar Kanduri, Meena Kanduri
Software Mentions: 4
Published: over 7 years ago

10.3389/fmed.2020.00451

Evaluating Distribution and Prognostic Value of New Tumor-Infiltrating Lymphocytes in HCC Based on a scRNA-Seq Study With CIBERSORTx
Cited by: 13
Author(s): Lixing Li, Lu Shen, Jianchao Ma, Qiang Zhou, M Li, Hao Wu, Muyun Wei, Di Zhang, Ting Wang, Shengying Qin, Tonghai Xing
Software Mentions: 4
Published: almost 6 years ago

10.3389/fimmu.2021.695806

An Unbiased Machine Learning Exploration Reveals Gene Sets Predictive of Allograft Tolerance After Kidney Transplantation
Cited by: 7
Author(s): Qiang Fu, Divyansh Agarwal, Kevin Deng, Rudy Matheson, Hongji Yang, Wei Liang, Ran Qing, Shaoping Deng, James F. Markmann
Software Mentions: 4
Published: about 5 years ago

10.1002/ece3.1881

High richness of ectomycorrhizal fungi and low host specificity in a coastal sand dune ecosystem revealed by network analysis
Cited by: 21
Author(s): Alice Roy‐Bolduc, Étienne Laliberté, Mohamed Hijri
Software Mentions: 4
Published: over 10 years ago

10.7554/eLife.28306

Defining the location of promoter-associated R-loops at near-nucleotide resolution using bisDRIP-seq
Cited by: 94
Author(s): Jason G Dumelie, Samie R. Jaffrey
Software Mentions: 4
Published: almost 9 years ago

10.1186/1471-2156-15-24

A genome-wide study of de novo deletions identifies a candidate locus for non-syndromic isolated cleft lip/palate risk
Cited by: 21
Author(s): Samuel G. Younkin, Robert B. Scharpf, Holger Schwender, Margaret M. Parker, Alan F. Scott, Mary L. Marazita, Terri H. Beaty, Ingo Ruczinski
Software Mentions: 4
Published: over 12 years ago

10.3389/fgene.2020.614160

An Eight-CpG-based Methylation Classifier for Preoperative Discriminating Early and Advanced-Late Stage of Colorectal Cancer
Cited by: 1
Author(s): Ji Hu, Fu-Ying Zhao, Bin Huang, Ran Jing, Meiyuan Chen, Hailin Liu, You-Song Deng, Xia Zhao, Xiaofan Han
Software Mentions: 4
Published: over 5 years ago

10.1186/s12859-016-1158-7

DISMISS: detection of stranded methylation in MeDIP-Seq data
Cited by: 6
Author(s): Umar Niazi, Kathrin K. Geyer, Martin Vickers, Karl F. Hoffmann, Martin Swain
Software Mentions: 4
Published: about 10 years ago

10.3389/fgene.2020.01017

Identification of a Novel Signature and Construction of a Nomogram Predicting Overall Survival in Clear Cell Renal Cell Carcinoma
Cited by: 5
Author(s): Xiangkun Wu, Zhijian Zhao, Aisha Khan, Chao Cai, Daojun Lv, Danan Gu, Yongda Liu
Software Mentions: 4
Published: almost 6 years ago

10.7554/eLife.24570

EED orchestration of heart maturation through interaction with HDACs is H3K27me3-independent
Cited by: 36
Author(s): Shanshan Ai, Yong Peng, Chen Li, Fei Gu, Xianhong Yu, Yanzhu Yue, Qing Ma, Jinghai Chen, Zhiqiang Lin, Pingzhu Zhou, Huafeng Xie, Terence Prendiville, Wen Zheng, Yuli Liu, Stuart H. Orkin, Dazhi Wang, Jia Yu, William T. Pu, Aibin He
Software Mentions: 4
Published: over 9 years ago

10.1371/journal.pcbi.1004809

QuIN: A Web Server for Querying and Visualizing Chromatin Interaction Networks
Cited by: 11
Author(s): Asa Thibodeau, Eladio J. Márquez, Oscar Junhong Luo, Yijun Ruan, Francesca Menghi, Dong-Guk Shin, Michael L. Stitzel, Paola Vera-Licona, Duygu Ucar
Software Mentions: 4
Published: about 10 years ago

10.7554/eLife.61531

HAT cofactor TRRAP modulates microtubule dynamics via SP1 signaling to prevent neurodegeneration
Cited by: 6
Author(s): Alicia Tapias, David Rodríguez Lázaro, Bo-Kun Yin, Seyed Mohammad Mahdi Rasa, Anna Krepelova, Erika Kelmer Sacramento, Paulius Grigaravičius, Philipp Koch, Joanna Kirkpatrick, Alessandro Ori, Francesco Neri, Zhaoqi Wang
Software Mentions: 4
Published: over 5 years ago

10.7150/thno.47830

LncRNA DSCAM-AS1 interacts with YBX1 to promote cancer progression by forming a positive feedback loop that activates FOXA1 transcription network
Cited by: 68
Author(s): Yin Zhang, Yong-Xin Huang, Dan-Lan Wang, Bing Yang, Haiyan Yan, Lehang Lin, Yun Li, Jie Chen, Lisha Xie, Yongsheng Huang, Jian-You Liao, Kaishun Hu, Jun He, Phei Er Saw, Xiaoding Xu, Yin Ding
Software Mentions: 4
Published: over 6 years ago

10.1186/s12864-019-6088-0

7C: Computational Chromosome Conformation Capture by Correlation of ChIP-seq at CTCF motifs
Cited by: 10
Author(s): Jonas Ibn-Salem, Miguel A. Andrade‐Navarro
Software Mentions: 4
Published: almost 7 years ago

10.7150/ijbs.60674

Ailanthus Altissima-derived Ailanthone enhances Gastric Cancer Cell Apoptosis by Inducing the Repression of Base Excision Repair by Downregulating p23 Expression
Cited by: 7
Author(s): Chunming Wang, Hua-Fu Li, Xiaokun Wang, Wu-Guo Li, Shan Qiao, Xing Xiao, Tong Hao, Wei Chen, Yawei Zhang, Haiyong Zhang, Wei Wu, Zhenran Hu, Guochao Zhao, Mingyu Huo, Yulong He, Changhua Zhang
Software Mentions: 4
Published: over 5 years ago