10.1371/journal.pone.0098552

Identification of Glyceraldehyde 3-Phosphate Dehydrogenase Sequence and Expression Profiles in Tree Shrew (Tupaia belangeri)
Cited by: 5
Author(s): Yu Zheng, Qihui Wang, Chenxia Yun, Yingjun Wang, Wanli W. Smith, Jing Leng
Software Mentions: 4
Published: about 12 years ago

10.1371/journal.pone.0150402

Trade-Offs between Growth Rate, Tree Size and Lifespan of Mountain Pine (Pinus montana) in the Swiss National Park
Cited by: 51
Author(s): Christof Bigler
Software Mentions: 4
Published: over 10 years ago

10.1186/s12859-017-1536-9

Network-based analysis of transcriptional profiles from chemical perturbations experiments
Cited by: 11
Author(s): Francesca Mulas, Amy Li, David H. Sherr, Stefano Monti
Software Mentions: 4
Published: over 9 years ago

10.3390/insects11060350

Large- and Small-Scale Environmental Factors Drive Distributions of Ant Mound Size Across a Latitudinal Gradient
Cited by: 4
Author(s): Orsolya Juhász, Zoltán Bátori, Gema Trigos‐Peral, Gábor Lőrinczi, Gábor Módra, Imola Bóni, Péter János Kiss, Dianne Joy Aguilon, Anna Tenyér, István Maák
Software Mentions: 4
Published: about 6 years ago

10.1016/j.isci.2021.102783

AMPK activation reverts mouse epiblast stem cells to naive state
Cited by: 4
Author(s): Yajing Liu, Junko Yamane, Akito Tanaka, Wataru Fujibuchi, Jun Yamashita
Software Mentions: 4
Published: about 5 years ago

10.1038/s41398-021-01431-6

Mapping the transcriptomics landscape of post-traumatic stress disorder symptom dimensions in World Trade Center responders
Cited by: 3
Author(s): Pei‐Fen Kuan, Xiaohua Yang, Ruwei Xu, Chang Che, Monika A. Waszczuk, Roman Kotov, Sean Clouston, Prashant Singh, Sean T. Glenn, Eduardo Cortes Gomez, Jianmin Wang, Evelyn J. Bromet, Benjamin J. Luft
Software Mentions: 4
Published: about 5 years ago

10.1016/j.csbj.2020.07.010

MU-PseUDeep: A deep learning method for prediction of pseudouridine sites
Cited by: 8
Author(s): Saad Khan, Fei He, Duolin Wang, Yongbing Chen, Dong Xu
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pone.0234219

No fruits without color: Cross-modal priming and EEG reveal different roles for different features across semantic categories
Cited by: 1
Author(s): Georgette Argiris, Raffaella I. Rumiati, Davide Crepaldi
Software Mentions: 4
Published: over 5 years ago

10.1093/database/bav096

Ensembl comparative genomics resources
Cited by: 315
Author(s): Javier Herrero, Matthieu Muffato, Kathryn Beal, Stephen Fitzgerald, Leo I. Gordon, Miguel Pignatelli, Albert J. Vilella, Stephen M. J. Searle, M Ridwan Amode, Simon Brent, William Spooner, Eugene Kulesha, Andy Yates, Paul Flicek
Software Mentions: 4
Published: over 10 years ago

10.1186/s12870-019-1708-z

The wild sweetpotato (Ipomoea trifida) genome provides insights into storage root development
Cited by: 30
Author(s): Ming Li, Songtao Yang, Wei Xü, Zhien Pu, Jiayi Feng, Zhangying Wang, Cong Zhang, Peng Ma, Chunguang Du, Feng Lin, Changhe Wei, Shuai Qiao, Hongda Zou, Lei Zhang, Yán Li, Huan Yang, Anzhong Liao, Wei Song, Zhongren Zhang, Ji Li, Kai Wang, Yizheng Zhang, Hao Lin, Jinbo Zhang, Wen-Fang Tan
Software Mentions: 4
Published: over 7 years ago

10.1371/journal.pone.0249839

A targeted e-learning approach for keeping universities open during the COVID-19 pandemic while reducing student physical interactions
Cited by: 19
Author(s): Sing Chen Yeo, Clin K Y Lai, Jacinda Tan, Joshua J. Gooley
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0110289

SlideToolkit: An Assistive Toolset for the Histological Quantification of Whole Slide Images
Cited by: 23
Author(s): Bastiaan G. L. Nelissen, Joost A. van Herwaarden, Frans L. Moll, Paul J. van Diest, Gérard Pasterkamp
Software Mentions: 4
Published: over 11 years ago

10.1371/journal.pone.0206190

Factors in hybridization of local medical systems: Simultaneous use of medicinal plants and modern medicine in Northeast Brazil
Cited by: 10
Author(s): Aguinaldo José do Nascimento, Patrícia Muniz de Medeiros, Ulysses Paulino Albuquerque
Software Mentions: 4
Published: over 7 years ago

10.1186/s12859-021-04070-2

Large-scale labeling and assessment of sex bias in publicly available expression data
Cited by: 10
Author(s): Emily Flynn, Annie C. Y. Chang, Russ B. Altman
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.ppat.1009234

Winter is coming–Temperature affects immune defenses and susceptibility to Batrachochytrium salamandrivorans
Cited by: 20
Author(s): Edward Davis Carter, Molly C. Bletz, Mitchell Le Sage, Brandon LaBumbard, Louise A. Rollins‐Smith, Douglas C. Woodhams, Debra L. Miller, Matthew J. Gray
Software Mentions: 4
Published: over 5 years ago

10.1098/rspb.2020.2722

Supplemented nutrition decreases helminth burden and increases drug efficacy in a natural host–helminth system
Cited by: 17
Author(s): Amy R. Sweeny, Melanie Clerc, Paulina A. Pontifes, Saudamini Venkatesan, Simon A. Babayan, Amy B. Pedersen
Software Mentions: 4
Published: over 5 years ago

10.1172/jci.insight.141341

Shear stress associated with cardiopulmonary bypass induces expression of inflammatory cytokines and necroptosis in monocytes
Cited by: 17
Author(s): Lan N. Tu, Lance Hsieh, Masaki Kajimoto, Kevin Charette, Nataliya Kibiryeva, Adriana Forero, Sarah E. Hampson, Jennifer Marshall, James E. O’Brien, Marta Scatena, Michael A. Portman, Ram Savan, Christopher Benner, Alberto Aliseda, Muhammad Nuri, Douglas C. Bittel, Peter Pastuszko, Vishal Nigam
Software Mentions: 4
Published: over 5 years ago

10.1172/jci.insight.150203

Genomic and epigenomic evolution of acquired resistance to combination therapy in esophageal squamous cell carcinoma
Cited by: 6
Author(s): Qingjie Min, Yan Wang, Qingnan Wu, Xianfeng Li, Huajing Teng, Jingyuan Fan, Yiren Cao, Pingsheng Fan, Qimin Zhan
Software Mentions: 4
Published: almost 5 years ago

10.1017/cts.2020.513

Lessons and tips for designing a machine learning study using EHR data
Cited by: 14
Author(s): Jaron Arbet, Cole Brokamp, Jareen Meinzen‐Derr, Katy E. Trinkley, Heidi Spratt
Software Mentions: 4
Published: about 6 years ago

10.1038/s41598-020-71592-9

Long-term effects of western diet consumption in male and female mice
Cited by: 23
Author(s): Yu Hasegawa, Shin-Yu Chen, Lili Sheng, Prasant Kumar Jena, Karen M. Kalanetra, David A. Mills, Yu Wan, Carolyn M. Slupsky
Software Mentions: 4
Published: almost 6 years ago

10.3389/fimmu.2021.716606

Augmented Expansion of Treg Cells From Healthy and Autoimmune Subjects via Adult Progenitor Cell Co-Culture
Cited by: 5
Author(s): James L. Reading, Valerie D. Roobrouck, Caroline Hull, Pablo D. Becker, Jelle Beyens, Alice Valentin-Torres, Dominic A. Boardman, Estefania Nova Lamperti, Samantha R. Stubblefield, Giovanna Lombardi, Robert Deans, Anthony E. Ting, Timothy Tree
Software Mentions: 4
Published: almost 5 years ago

10.1186/gb-2013-14-12-r141

Obligate mutualism within a host drives the extreme specialization of a fig wasp genome
Cited by: 79
Author(s): Jin‐Hua Xiao, Zhen Yue, Ling-Yi Jia, Xinhua Yang, Lihua Niu, Zhuo Wang, Peng Zhang, Bao‐Fa Sun, Shunmin He, Zi Li, Tuanlin Xiong, Xintian Wen, Haifeng Gu, Bo Wang, John H. Werren, Robert W. Murphy, David A. Wheeler, Li‐Ming Niu, Guang-Chang Ma, Ting Tang, Sheng‐Nan Bian, Ningxin Wang, Caiqiong Yang, Nan Wang, Yanlong Fu, Wenzhu Li, Soojin V. Yi, Xingyu Yang, Qing Zhou, Changxin Lu, Chunyan Xu, Li He, Lili Yu, Ming Chen, Yawen Zheng, Shaowei Wang, Shuang Zhao, Yanhong Li, Yangyang Yu, Xiaoju Qian, Yuchen Cai, Lianle Bian, Shu Zhang, Junyi Wang, Ye Yin, Hui Xiao, Guan-Hong Wang, Hui Yu, Wei-Jian Wu, James M. Cook, Jun Wang, Dawei Huang
Software Mentions: 4
Published: over 13 years ago

10.1016/j.isci.2021.102889

LiquidCNA: Tracking subclonal evolution from longitudinal liquid biopsies using somatic copy number alterations
Cited by: 5
Author(s): Eszter Lakatos, Helen Hockings, Maximilian Mossner, Weini Huang, Michelle Lockley, Trevor A. Graham
Software Mentions: 4
Published: almost 5 years ago

10.1371/journal.pgen.1009302

UV-exposure, endogenous DNA damage, and DNA replication errors shape the spectra of genome changes in human skin
Cited by: 24
Author(s): Natalie Saini, Camille K. Giacobone, Leszek J. Klimczak, Brian N. Papas, Adam Burkholder, Jianliang Li, David C. Fargo, Re Bai, Kevin Gerrish, Cynthia L. Innes, Shepherd H. Schurman, Dmitry A. Gordenin
Software Mentions: 4
Published: over 5 years ago

10.7554/eLife.58597

The leukocyte non-coding RNA landscape in critically ill patients with sepsis
Cited by: 28
Author(s): Brendon P. Scicluna, Fabrice Uhel, Lonneke A. van Vught, Maryse A. Wiewel, Arie J. Hoogendijk, Ingelore Baessman, Marek Franitza, Peter Nürnberg, Janneke Horn, Olaf L. Cremer, Marc J. M. Bonten, Marcus J. Schultz, Tom van der Poll
Software Mentions: 4
Published: over 5 years ago

10.1093/gigascience/giaa036

Chromosome-level reference genome of the jellyfish Rhopilema esculentum
Cited by: 16
Author(s): Yunfeng Li, Lei Gao, Yongjia Pan, Meilin Tian, Yulong Li, Chongbo He, Ying Dong, Yamin Sun, Zunchun Zhou
Software Mentions: 4
Published: over 6 years ago

10.1007/s00109-014-1212-8

Transcriptomic profiling facilitates classification of response to influenza challenge
Cited by: 34
Author(s): Emma E Davenport, Richard Antrobus, Patrick Lillie, Sarah C. Gilbert, Julian C. Knight
Software Mentions: 4
Published: over 11 years ago

10.3389/fphys.2020.00862

Strategies to Enhance Logic Modeling-Based Cell Line-Specific Drug Synergy Prediction
Cited by: 6
Author(s): Barbara Niederdorfer, Vasundra Touré, Miguél Vázquez, Liv Thommesen, Martin Kuiper, Astrid Lægreid, Åsmund Flobak
Software Mentions: 4
Published: almost 6 years ago

10.3389/fpsyg.2018.00214

Group Facial Width-to-Height Ratio Predicts Intergroup Negotiation Outcomes
Cited by: 8
Author(s): Yang Yu, Chaojing Tang, Xiaofei Qu, Chao Wang, Thomas F. Denson
Software Mentions: 4
Published: over 8 years ago

10.1186/s13059-020-02198-7

The Tetracentron genome provides insight into the early evolution of eudicots and the formation of vessel elements
Cited by: 17
Author(s): Pingli Liu, Xi Zhang, Jian‐Feng Mao, Yan-Ming Hong, Rengang Zhang, E Yilan, Shuai Nie, Kai‐Hua Jia, Chen-Kun Jiang, Jian He, Weiwei Shen, Qizouhong He, Wenqing Zheng, Samar H. Abbas, Pawan Kumar Jewaria, Xue Tian, Changjun Liu, Xueyu Jiang, Yafang Yin, Bo Liu, Li Wang, Biao Jin, Yongpeng Ma, Zongbo Qiu, Frantǐsek Baluška, Jozef Šamaj, Xin-Qiang He, Shihui Niu, Jianbo Xie, Lei Xie, Huimin Xu, Hongzhi Kong, Song Ge, Richard A. Dixon, Yuannian Jiao, Jinxing Lin
Software Mentions: 4
Published: over 5 years ago

10.7554/eLife.47013

An evolutionary recent IFN/IL-6/CEBP axis is linked to monocyte expansion and tuberculosis severity in humans
Cited by: 27
Author(s): Murilo Delgobo, Daniel A G B Mendes, Edgar Kozlova, Edroaldo Lummertz da Rocha, Gabriela F. Rodrigues-Luiz, Lucas Mascarin, Greicy Brisa Malaquias Dias, Daniel de Oliveira Patricio, Tim Dierckx, Maíra A. Bicca, G Bretton, Yonne Karoline Tenório de Menezes, Márick R Starick, Darcita Büerger Rovaris, Joanita Del Moral, Daniel Santos Mansur, Johan Van Weyenbergh, André Báfica
Software Mentions: 4
Published: almost 7 years ago

10.1038/s41598-020-72951-2

Urban resources limit pair coordination over offspring provisioning
Cited by: 16
Author(s): Davide Baldan, Jenny Q. Ouyang
Software Mentions: 4
Published: almost 6 years ago

10.3389/fmicb.2019.00006

Fungal Biodiversity of the Most Common Types of Polish Soil in a Long-Term Microplot Experiment
Cited by: 38
Author(s): Jarosław Grządziel, Anna Gałązka
Software Mentions: 4
Published: over 7 years ago

10.3389/fpls.2021.653183

Transcriptome Analysis of Tetraploid and Octoploid Common Reed (Phragmites australis)
Cited by: 5
Author(s): Cui Wang, Tong Wang, Meiqi Yin, Franziska Eller, Lele Liu, Hans Brix, Weihua Guo
Software Mentions: 4
Published: about 5 years ago

10.1038/s41598-021-90297-1

Subsoil-potassium depletion accounts for the nutrient budget in high-potassium agricultural soils
Cited by: 6
Author(s): Adrián A. Correndo, Gerardo Rubio, Fernando O. García, Ignacio A. Ciampitti
Software Mentions: 4
Published: about 5 years ago

10.3389/fgene.2020.566320

Transcriptomic and Epigenomic Dynamics of Honey Bees in Response to Lethal Viral Infection
Cited by: 11
Author(s): Hongmei Li-Byarlay, Humberto Boncristiani, Gary W. Howell, Jacob Herman, Lindsay V. Clark, Micheline K. Strand, David R. Tarpy, Olav Rueppell
Software Mentions: 4
Published: almost 6 years ago

10.1038/s41598-020-76796-7

The effect of hypoxia on the proteomic signature of pig adipose-derived stromal/stem cells (pASCs)
Cited by: 7
Author(s): Joanna Bukowska, Mariola Słowińska, Patrycja Cierniak, Marta Kopcewicz, Katarzyna Walendzik, Trivia Frazier, Barbara Gawrońska‐Kozak
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-018-36912-0

DNA damage and transcriptional regulation in iPSC-derived neurons from Ataxia Telangiectasia patients
Cited by: 10
Author(s): Alessandro Corti, Raina Sota, Matteo Dugo, Raffaele Calogero, Benedetta Terragni, Massimo Mantegazza, Silvana Franceschetti, Michela Restelli, Patrizia Gasparini, Daniele Lecis, Krystyna Chrzanowska, Domenico Delia
Software Mentions: 4
Published: over 7 years ago

10.3389/fmicb.2018.01249

Sediment Microbial Communities Influenced by Cool Hydrothermal Fluid Migration
Cited by: 12
Author(s): Laura Zinke, Brandi Kiel Reese, James McManus, C. G. Wheat, Beth N. Orcutt, Jan P. Amend
Software Mentions: 4
Published: about 8 years ago

10.1186/s12859-017-1571-6

Avoiding the pitfalls of gene set enrichment analysis with SetRank
Cited by: 87
Author(s): Cédric Simillion, Robin Liechti, Heidi E. L. Lischer, Vassilios Ioannidis, Rémy Bruggmann
Software Mentions: 4
Published: over 9 years ago

10.3390/e21121168

Using Entropy for Welds Segmentation and Evaluation
Cited by: 7
Author(s): Oto Haffner, Erik Kučera, Peter Drahoš, Jan Cigánek
Software Mentions: 4
Published: over 6 years ago

10.3389/fphys.2021.698463

Integrating External and Internal Load for Monitoring Fitness and Fatigue Status in Standard Microcycles in Elite Rink Hockey
Cited by: 3
Author(s): Daniel Fernández, David Moya Malapeira, Joan A. Cadefau, Gerard Carmona
Software Mentions: 4
Published: about 5 years ago

10.1186/s12859-016-1403-0

Robust multi-group gene set analysis with few replicates
Cited by: 4
Author(s): Pashupati P. Mishra, Alan Medlar, Liisa Holm, Petri Törönen
Software Mentions: 4
Published: over 9 years ago

10.1172/jci.insight.138443

Epigenetic regulation of the PGE2 pathway modulates macrophage phenotype in normal and pathologic wound repair
Cited by: 31
Author(s): Frank M. Davis, Lam C. Tsoi, Rachael Wasikowski, Aaron D. denDekker, Amrita Joshi, Carol A. Wilke, Hongping Deng, Sonya Wolf, Andrea Obi, Steven K. Huang, Allison C. Billi, Scott T. Robinson, Jay H Lipinski, William J. Melvin, Christopher O. Audu, Stephan Weidinger, Steven L. Kunkel, Andrew M. Smith, Jóhann E. Guðjónsson, Bethany B. Moore, Katherine A. Gallagher
Software Mentions: 4
Published: almost 6 years ago

10.1016/j.bbih.2021.100265

Transcriptional profiling of macaque microglia reveals an evolutionary preserved gene expression program
Cited by: 4
Author(s): Marissa Dubbelaar, Chairi Misrielal, Jeffrey J. Bajramović, Saskia M. Burm, Ella A. Zuiderwijk‐Sick, Nieske Brouwer, Corien Grit, Susanne M. Kooistra, Sueli Mieko Oba-Shinjo, Suely Kazue Nagahashi Marie, Hendrikus Boddeke, Bart J. L. Eggen
Software Mentions: 4
Published: almost 5 years ago

10.1002/pld3.28

Divergent leaf shapes among <i>Passiflora</i> species arise from a shared juvenile morphology
Cited by: 24
Author(s): Daniel H. Chitwood, Wagner Campos Otoni
Software Mentions: 4
Published: over 8 years ago

10.1038/s41416-020-0799-5

A novel stratification framework for predicting outcome in patients with prostate cancer
Cited by: 8
Author(s): Bogdan A. Luca, Vincent Moulton, Christopher Ellis, Dylan R. Edwards, Colin Campbell, Rosalin Cooper, Jeremy Clark, Daniel Brewer, Christopher S. Cooper
Software Mentions: 4
Published: over 6 years ago

10.1016/j.stemcr.2020.06.003

Naive Human Embryonic Stem Cells Can Give Rise to Cells with a Trophoblast-like Transcriptome and Methylome
Cited by: 118
Author(s): Jessica Cinkornpumin, Sin Young Kwon, Yixin Guo, Ishtiaque Hossain, Jacinthe Sirois, Colleen S. Russett, Hsin Wei Tseng, Hiroaki Okae, Takahiro Arima, Thomas F. Duchaîne, Wanlu Liu, William A. Pastor
Software Mentions: 4
Published: about 6 years ago

10.1038/srep43149

The hidden perils of read mapping as a quality assessment tool in genome sequencing
Cited by: 4
Author(s): Burhan Lehri, Alan M. Seddon, Andrey V. Karlyshev
Software Mentions: 4
Published: over 9 years ago

10.1523/ENEURO.0163-21.2021

Factors That Influence Career Choice among Different Populations of Neuroscience Trainees
Cited by: 8
Author(s): Lauren Ullrich, John R. Ogawa, Michelle Jones-London
Software Mentions: 4
Published: about 5 years ago

10.14814/phy2.14012

Fecal transplant modifies urine chemistry risk factors for urinary stone disease
Cited by: 18
Author(s): Joshua M. Stern, Marcia Urban‐Maldonado, Mykhaylo Usyk, Ignacio Granja, Daniel Schoenfeld, Kelvin P. Davies, Ilir Agalliu, John R. Asplin, Robert D. Burk, Sylvia O. Suadicani
Software Mentions: 4
Published: over 7 years ago

10.3389/fpls.2019.01570

Genetic Correlation, Genome-Wide Association and Genomic Prediction of Portable NIRS Predicted Carotenoids in Cassava Roots
Cited by: 18
Author(s): Ugochukwu N. Ikeogu, Deniz Akdemir, Wolfe, Uche Godfrey Okeke, Chinedozi Amaefula, Jean‐Luc Jannink, Chiedozie Egesi
Software Mentions: 4
Published: over 6 years ago

10.1128/mSphere.00484-20

Root Microbiome Modulates Plant Growth Promotion Induced by Low Doses of Glyphosate
Cited by: 16
Author(s): Darío X. Ramírez-Villacís, Omri M. Finkel, Isai Salas-González, Connor R. Fitzpatrick, Jeffery L. Dangl, Corbin D. Jones, Antonio León-Reyes
Software Mentions: 4
Published: almost 6 years ago

10.3389/fonc.2020.571655

Identification and Validation of a Novel Six-Gene Prognostic Signature of Stem Cell Characteristic in Colon Cancer
Cited by: 17
Author(s): Liang Yue, Shijie Qi, Xin Wu
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-019-43169-8

Zooarchaeology of the social and economic upheavals in the Late Antique-Early Islamic sequence of the Negev Desert
Cited by: 23
Author(s): Nimrod Marom, Meirav Meiri, Yotam Tepper, Tali Erickson-Gini, Hagar Reshef, Lior Weissbrod, Guy Bar-Oz
Software Mentions: 4
Published: about 7 years ago

10.1038/s41598-020-63956-y

The internal cranial anatomy of Champsosaurus (Choristodera: Champsosauridae): Implications for neurosensory function
Cited by: 9
Author(s): Thomas W. Dudgeon, Hillary C. Maddin, David C. Evans, Jordan C. Mallon
Software Mentions: 4
Published: about 6 years ago

10.3390/metabo10040143

Metabolomics Benefits from Orbitrap GC–MS—Comparison of Low- and High-Resolution GC–MS
Cited by: 29
Author(s): Daniel Stettin, Remington X. Poulin, Georg Pohnert
Software Mentions: 4
Published: over 6 years ago

10.1186/s12864-020-07218-1

Targeted mutagenesis of ∆5 and ∆6 fatty acyl desaturases induce dysregulation of lipid metabolism in Atlantic salmon (Salmo salar)
Cited by: 6
Author(s): Yang Jin, Alex K. Datsomor, Rolf Erik Olsen, Jon Olav Vik, Jacob Torgersen, Rolf B. Edvardsen, Anna Wargelius, Per Winge, Fabian Grammes
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-019-51118-8

Extensive vegetation browning and drying in forests of India’s Tiger Reserves
Cited by: 7
Author(s): Pradeep Koulgi, Nicholas Clinton, Krithi K. Karanth
Software Mentions: 4
Published: almost 7 years ago

10.1186/s12864-016-2695-1

Improving microRNA target prediction with gene expression profiles
Cited by: 22
Author(s): Cesaré Ovando-Vázquez, Daniel Lepe-Soltero, Cei Abreu‐Goodger
Software Mentions: 4
Published: about 10 years ago

10.1186/s13104-020-05357-y

Comprehensive analysis of single-cell RNA sequencing data from healthy human marrow hematopoietic cells
Cited by: 4
Author(s): Xin Zhao, Shaojian Gao, Sachiko Kajigaya, Qingguo Liu, Zhijie Wu, Xingmin Feng, Fengkui Zhang, Neal S. Young
Software Mentions: 4
Published: over 5 years ago

10.7554/eLife.45374

Gender variations in citation distributions in medicine are very small and due to self-citation and journal prestige
Cited by: 43
Author(s): Jens Peter Andersen, Jesper W. Schneider, Reshma Jagsi, Mathias Wullum Nielsen
Software Mentions: 4
Published: about 7 years ago

10.3390/nu12051257

Prebiotic Effects of Partially Hydrolyzed Guar Gum on the Composition and Function of the Human Microbiota—Results from the PAGODA Trial
Cited by: 35
Author(s): Simon Reider, Simon Moosmang, J Tragust, Lovro Trgovec-Greif, Simon Tragust, Lorenz Perschy, Nicole Przysiecki, Sonja Sturm, Herbert Tilg, Hermann Stuppner, Thomas Rattei, Alexander R. Moschen
Software Mentions: 4
Published: about 6 years ago

10.3390/metabo9090171

WiPP: Workflow for Improved Peak Picking for Gas Chromatography-Mass Spectrometry (GC-MS) Data
Cited by: 18
Author(s): Nico Borgsmüller, Yoann Gloaguen, Tobias Opialla, Eric Blanc, Emilie Sicard, Anne-Lise Royer, Bruno Le Bizec, Stéphanie Durand, Carole Migné, Mélanie Petera, Estelle Pujos‐Guillot, Franck Giacomoni, Yann Guitton, Dieter Beule, Jennifer Kirwan
Software Mentions: 4
Published: almost 7 years ago

10.1186/s40168-018-0460-1

Flexible metagenome analysis using the MGX framework
Cited by: 18
Author(s): Sebastian Jaenicke, Stefan P. Albaum, Patrick Blumenkamp, Burkhard Linke, Jens Stoye, Alexander Goesmann
Software Mentions: 4
Published: over 8 years ago

10.1089/phage.2020.0046

Isolation and Characterization of <i>Klebsiella</i> Phages for Phage Therapy
Cited by: 32
Author(s): Eleanor Townsend, L. Kelly, Lucy Gannon, George Muscatt, Rhys A. Dunstan, Slawomir Michniewski, Hari Sapkota, Saija Kiljunen, Anna Kolsi, Mikael Skurnik, Trevor Lithgow, Andrew Millard, Eleanor Jameson
Software Mentions: 4
Published: over 5 years ago

10.1186/s40246-020-00270-8

A potential prognostic prediction model of colon adenocarcinoma with recurrence based on prognostic lncRNA signatures
Cited by: 14
Author(s): Lipeng Jin, Chenyao Li, Tao Liu, Lei Wang
Software Mentions: 4
Published: about 6 years ago

10.7717/peerj.10231

Comparing sediment DNA extraction methods for assessing organic enrichment associated with marine aquaculture
Cited by: 22
Author(s): John K. Pearman, Nigel Keeley, Susanna A. Wood, Olivier Laroche, Anastasija Zaiko, Georgia Thomson‐Laing, Laura Biessy, Javier Atalah, Xavier Pochon
Software Mentions: 4
Published: over 5 years ago

10.1038/s41597-020-0485-8

Pofatu, a curated and open-access database for geochemical sourcing of archaeological materials
Cited by: 5
Author(s): Aymeric Hermann, Robert Forkel, Andrew McAlister, A. A. Cruickshank, Mark Golitko, Brendan Kneebone, Mark D. McCoy, Christian Reepmeyer, Peter Sheppard, John M. Sinton, Marshall I. Weisler
Software Mentions: 4
Published: about 6 years ago

10.1042/BSR20194337

Mining TCGA database for tumor mutation burden and their clinical significance in bladder cancer
Cited by: 71
Author(s): Jia Lv, Yongze Zhu, Alin Ji, Qi Zhang, Guodong Liao
Software Mentions: 4
Published: over 6 years ago

10.7717/peerj.10572

Genomic diversity of <i>Escherichia coli</i> from healthy children in rural Gambia
Cited by: 7
Author(s): Ebenezer Foster-Nyarko, Nabil-Fareed Alikhan, Usman N. Ikumapayi, Golam Sarwar, Catherine Okoi, Peggy-Estelle Tientcheu, Marianne Defernez, Justin O’Grady, Martín Antonio, Mark J. Pallen
Software Mentions: 4
Published: over 5 years ago

10.1155/2020/8962090

Identification of Differentially Expressed lncRNAs and mRNAs in Children with Acquired Aplastic Anemia by RNA Sequencing
Cited by: 1
Author(s): Shaoying Lu, Xiaoxiao Song, Jing Chen, Xuguang Qiao
Software Mentions: 4
Published: about 6 years ago

10.3390/foods9091307

The Meaning of Emoji to Describe Food Experiences in Pre-Adolescents
Cited by: 29
Author(s): Julia Sick, Erminio Monteleone, Lapo Pierguidi, Gastón Ares, Sara Spinelli
Software Mentions: 4
Published: almost 6 years ago

10.1534/g3.118.200585

Transcriptomic Plasticity in the Arthropod Generalist <i>Tetranychus urticae</i> Upon Long-Term Acclimation to Different Host Plants
Cited by: 36
Author(s): Simon Snoeck, Nicky Wybouw, Thomas Van Leeuwen, Wannes Dermauw
Software Mentions: 4
Published: over 7 years ago

10.1186/s40793-020-00363-w

Reducing the arbitrary: fuzzy detection of microbial ecotones and ecosystems – focus on the pelagic environment
Cited by: 3
Author(s): Antoine Bagnaro, Federico Baltar, G. Brownstein, William G. Lee, Sergio E. Morales, Daniel W. Pritchard, Christopher D. Hepburn
Software Mentions: 4
Published: almost 6 years ago

10.3390/ijerph181910438

COVID-19 Vaccine Hesitancy in the Month Following the Start of the Vaccination Process
Cited by: 25
Author(s): Liviu‐Adrian Cotfas, Camelia Delcea, Rareș Gherai
Software Mentions: 4
Published: almost 5 years ago

10.1371/journal.pbio.3000106

A census-based estimate of Earth's bacterial and archaeal diversity
Cited by: 124
Author(s): Stilianos Louca, Florent Mazel, Michael Doebeli, Laura Wegener Parfrey
Software Mentions: 4
Published: over 7 years ago

10.1002/1878-0261.12312

<i>N</i> ‐glycan signatures identified in tumor interstitial fluid and serum of breast cancer patients: association with tumor biology and clinical outcome
Cited by: 21
Author(s): Thilde Terkelsen, Vilde Drageset Haakensen, Radka Saldova, Pavel Gromov, Morten Hansen, Henning Stöckmann, Ole Christian Lingjærde, Anne‐Lise Børresen‐Dale, Elena Papaleo, Åslaug Helland, Pauline M. Rudd, Irina Gromova
Software Mentions: 4
Published: about 8 years ago

10.7554/eLife.58999

Does diversity beget diversity in microbiomes?
Cited by: 28
Author(s): Naïma Madi, Michiel Vos, Carmen Lía Murall, Pierre Legendre, B. Jesse Shapiro
Software Mentions: 4
Published: over 5 years ago

10.3390/ijms20174094

Mice Exposed to Combined Chronic Low-Dose Irradiation and Modeled Microgravity Develop Long-Term Neurological Sequelae
Cited by: 18
Author(s): Eliah Overbey, Amber M. Paul, Willian A. da Silveira, Candice Tahimic, Sigrid Reinsch, Nathaniel J. Szewczyk, Seta Stanbouly, Charles Wang, Jonathan M. Galazka, Xiao Wen Mao
Software Mentions: 4
Published: almost 7 years ago

10.1093/molbev/msaa324

Repeated Evolution of Inactive Pseudonucleases in a Fungal Branch of the Dis3/RNase II Family of Nucleases
Cited by: 8
Author(s): Elizabeth R. Ballou, Atlanta G. Cook, Eric Wallace
Software Mentions: 4
Published: over 5 years ago

10.1002/ece3.5751

Using co‐occurrence network topology in assessing ecological stress in benthic macroinvertebrate communities
Cited by: 2
Author(s): Ariel Levi Simons, Raphael D. Mazor, Susanna Theroux
Software Mentions: 4
Published: over 6 years ago

10.7554/eLife.35786

Human axial progenitors generate trunk neural crest cells in vitro
Cited by: 70
Author(s): Thomas J.R. Frith, Ilaria Granata, Matthew Wind, Erin Stout, Oliver Thompson, Katrin Neumann, Dylan Stavish, Paul R. Heath, Daniel Ortmann, James Hackland, Konstantinos Anastassiadis, Mina Gouti, James Briscoe, Valerie Wilson, Stuart L. Johnson, Marysia Placzek, Mario Rosario Guarracino, Peter W. Andrews, Anestis Tsakiridis
Software Mentions: 4
Published: almost 8 years ago

10.1186/s12916-020-01808-2

Adding flexibility to clinical trial designs: an example-based guide to the practical use of adaptive designs
Cited by: 43
Author(s): T. Burnett, Pavel Mozgunov, Philip Pallmann, Sofía S. Villar, Graham Wheeler, Thomas Jaki
Software Mentions: 4
Published: over 5 years ago

10.7554/eLife.28625

The C. elegans neural editome reveals an ADAR target mRNA required for proper chemotaxis
Cited by: 30
Author(s): Sarah N. Deffit, Brian A. Yee, Aidan C. Manning, Suba Rajendren, Pranathi Vadlamani, Emily C. Wheeler, Alain Domissy, Michael C. Washburn, G Yeo, Heather A. Hundley
Software Mentions: 4
Published: almost 9 years ago

10.7554/eLife.68130

Cellular, circuit and transcriptional framework for modulation of itch in the central amygdala
Cited by: 19
Author(s): Vijay K. Samineni, Gary E. Grajales‐Reyes, Eric Tycksen, Bryan A. Copits, Christian Pedersen, Edem S Ankudey, Julian N Sackey, Sienna B Sewell, Michael R. Bruchas, Robert W. Gereau
Software Mentions: 4
Published: about 5 years ago

10.7554/eLife.31159

ERα promotes murine hematopoietic regeneration through the Ire1α-mediated unfolded protein response
Cited by: 37
Author(s): Richard H. Chapple, Tianyuan Hu, Yung Zu Tseng, L. Liu, Ayumi Kitano, Victor Luu, Kevin A. Hoegenauer, Takao Iwawaki, Qing Li, Daisuke Nakada
Software Mentions: 4
Published: over 8 years ago

10.1038/s41396-020-00841-6

Evolution of Pseudomonas aeruginosa toward higher fitness under standard laboratory conditions
Cited by: 8
Author(s): Igor Grekov, Janne G. Thöming, Adrian Kordes, Susanne Häußler
Software Mentions: 4
Published: over 5 years ago

10.7554/eLife.52896

Recruitment of mRNAs to P granules by condensation with intrinsically-disordered proteins
Cited by: 88
Author(s): Chih Yung S. Lee, Andrea Putnam, Tu Lu, Shuai Xin He, John Paul T. Ouyang, Géraldine Seydoux
Software Mentions: 4
Published: over 6 years ago

10.7554/eLife.50530

Viral miRNA adaptor differentially recruits miRNAs to target mRNAs through alternative base-pairing
Cited by: 5
Author(s): Carlos Gorbea, Tim Mosbruger, David A. Nix, Demián Cazalla
Software Mentions: 4
Published: almost 7 years ago

10.7554/eLife.51139

Diversification of the Caenorhabditis heat shock response by Helitron transposable elements
Cited by: 19
Author(s): Jacob M. Garrigues, Brian V Tsu, Matthew D. Daugherty, Amy E. Pasquinelli
Software Mentions: 4
Published: over 6 years ago

10.7554/eLife.54792

Gut Helicobacter presentation by multiple dendritic cell subsets enables context-specific regulatory T cell generation
Cited by: 18
Author(s): Emilie V. Russler-Germain, Jaeu Yi, Shannon Young, Katherine Nutsch, Ho-Lun Wong, Teresa L. Ai, Jiani N. Chai, Vivek Durai, Daniel H. Kaplan, Ronald N. Germain, Kenneth M. Murphy, Chyi-Song Hsieh
Software Mentions: 4
Published: over 5 years ago

10.1038/s41438-018-0073-7

Tomato DCL2b is required for the biosynthesis of 22-nt small RNAs, the resulting secondary siRNAs, and the host defense against ToMV
Cited by: 39
Author(s): Tian Wang, Zhiqi Deng, Xi Zhang, Hongzheng Wang, Yu Wang, Xiuying Liu, Songyu Liu, Feng Xu, Tao Li, Daqi Fu, Beiwei Zhu, Yunbo Luo, Hongliang Zhu
Software Mentions: 4
Published: almost 8 years ago

10.1186/s13643-020-01295-9

Hospital volume-outcome relationship in total knee arthroplasty: protocol for a systematic review and non-linear dose-response meta-analysis
Cited by: 6
Author(s): Tanja Rombey, Käthe Goossen, Jessica Breuing, Tim Mathes, Simone Heß, René Burchard, Dawid Pieper
Software Mentions: 4
Published: over 6 years ago

10.1038/s41598-019-50790-0

Signal flow control of complex signaling networks
Cited by: 6
Author(s): Daewon Lee, Kwang-Hyun Cho
Software Mentions: 4
Published: almost 7 years ago

10.3390/microorganisms9020221

The Interplay between Campylobacter and the Caecal Microbial Community of Commercial Broiler Chickens over Time
Cited by: 9
Author(s): Ilaria Patuzzi, Massimiliano Orsini, Veronica Cibin, Sara Petrin, Eleonora Mastrorilli, Alessia Tiengo, Federica Gobbo, Salvatore Catania, Lisa Barco, Antonia Ricci, Carmen Losasso
Software Mentions: 4
Published: over 5 years ago

10.3390/microorganisms7110502

The Human Milk Microbiota is Modulated by Maternal Diet
Cited by: 54
Author(s): Marina Padilha, Niels Banhos Danneskiold‐Samsøe, Asker Brejnrod, Christian Hoffmann, Vanessa Pereira Cabral, Julia de Melo Iaucci, Cristiane Hermes Sales, Regina Mara Fisberg, Ramon V. Cortez, Susanne Brix, Carla Romano Taddei, Karsten Kristiansen, Susana Marta Isay Saad
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pntd.0003705

Tsetse Fly (G.f. fuscipes) Distribution in the Lake Victoria Basin of Uganda
Cited by: 25
Author(s): Albert Mugenyi, Nicola A. Wardrop, Peter M. Atkinson, Stephen J. Torr, Susan C. Welburn
Software Mentions: 4
Published: over 11 years ago

10.1038/s41598-020-61851-0

Sex Differences in Colon Cancer Metabolism Reveal A Novel Subphenotype
Cited by: 39
Author(s): Yuping Cai, Nicholas A. Rattray, Qian Zhang, Varvara Mironova, Álvaro José Santos-Neto, Kuo-Shun Hsu, Zahra Rattray, Justin R. Cross, Yawei Zhang, Philip B. Paty, Sajid Khan, Caroline H. Johnson
Software Mentions: 4
Published: over 6 years ago

10.1016/j.devcel.2016.08.013

Control of Oriented Tissue Growth through Repression of Organ Boundary Genes Promotes Stem Morphogenesis
Cited by: 61
Author(s): Stefano Bencivenga, Antonio Serrano-Mislata, Maxwell S. Bush, Samantha Fox, Robert Sablowski
Software Mentions: 4
Published: almost 10 years ago