10.3389/fgene.2021.654657

Discovery and Verification of an Immune-Related Gene Pairs Signature for Predicting Prognosis in Head and Neck Squamous Cell Carcinoma
Cited by: 0
Author(s): Jiarong He, Xinqi Fang, Mingming Han
Software Mentions: 4
Published: about 5 years ago

10.3389/fpls.2020.555071

Inheritance of Rootstock Effects in Avocado (Persea americana Mill.) cv. Hass
Cited by: 19
Author(s): Paula H. Reyes-Herrera, Laura Muñoz-Baena, Valeria Velásquez-Zapata, Laura Patiño, Oscar A. Delgado-Paz, Cipriano A. Díaz-Diez, Alejandro A. Navas-Arboleda, Andrés J. Cortés
Software Mentions: 4
Published: over 5 years ago

10.1186/s12915-019-0626-8

Transcriptome, proteome and draft genome of Euglena gracilis
Cited by: 88
Author(s): ThankGod Echezona Ebenezer, Martin Zoltner, Alana Burrell, Anna Nenarokova, Anna M. G. Novák Vanclová, Binod Prasad, Petr Soukal, Carlos Santana-Molina, Ellis C. O’Neill, Nerissa N. Nankissoor, Nithya Vadakedath, Viktor Daiker, Samson O. Obado, Sara Silva Pereira, Andrew P. Jackson, Damien P. Devos, Julius Lukeš, Michael Lebert, Sue Vaughan, Vladimı́r Hampl, Mark Carrington, Michael L. Ginger, Joel B. Dacks, Steven L. Kelly, Mark C. Field
Software Mentions: 4
Published: over 7 years ago

10.1186/s12915-021-01104-2

A novel plant-fungal association reveals fundamental sRNA and gene expression reprogramming at the onset of symbiosis
Cited by: 7
Author(s): Ena Šečić, Silvia Zanini, Daniel Wibberg, Lukas Jelonek, Tobias Busche, Jörn Kalinowski, Sabrine Nasfi, Jennifer Thielmann, Jafargholi Imani, Jens Steinbrenner, Karl‐Heinz Kogel
Software Mentions: 4
Published: almost 5 years ago

10.1186/s12915-020-00779-3

Mapping DNA interaction landscapes in psoriasis susceptibility loci highlights KLF4 as a target gene in 9q31
Cited by: 15
Author(s): Helen Ray-Jones, Kate Duffus, Amanda McGovern, Paul Martin, Chenfu Shi, Jenny Hankinson, Oliver Gough, Annie Yarwood, Andrew P. Morris, Antony Adamson, Craig Taylor, Julia Ding, Vasanthi Priyadarshini Gaddi, Yao Fu, Patrick M. Gaffney, Gisela Orozco, Richard B Warren, Steve Eyre
Software Mentions: 4
Published: about 6 years ago

10.1186/s12915-017-0352-z

The landscape of sex-differential transcriptome and its consequent selection in human adults
Cited by: 180
Author(s): Moran Gershoni, Shmuel Pietrokovski
Software Mentions: 4
Published: over 9 years ago

10.1186/s12885-021-08218-4

MACE-Seq-based coding RNA and TrueQuant-based small RNA profile in breast cancer: tumor-suppressive miRNA-1275 identified as a novel marker
Cited by: 5
Author(s): Sevan Omer Majed, Suhad Asad Mustafa
Software Mentions: 4
Published: about 5 years ago

10.1186/s12864-016-2888-7

Comparison of pre-processing methods for multiplex bead-based immunoassays
Cited by: 13
Author(s): Tanja K. Rausch, Arne Schillert, Andreas Ziegler, Angelika Lüking, Hans‐Dieter Zucht, Peter Schulz‐Knappe
Software Mentions: 4
Published: almost 10 years ago

10.1186/s12885-020-07513-w

Ovarian cancer cells direct monocyte differentiation through a non-canonical pathway
Cited by: 5
Author(s): Kaitlin C. Fogg, Andrew Miller, Ying Liu, Will Flanigan, Alyssa Walker, Amy O'Shea, Christina Kendziorski, Pamela K. Kreeger
Software Mentions: 4
Published: almost 6 years ago

10.3390/ijerph15102144

Neighborhood Violence Impacts Disease Control and Surveillance: Case Study of Cali, Colombia from 2014 to 2016
Cited by: 6
Author(s): Amy R. Krystosik, Andrew Curtis, A. Desirée LaBeaud, Diana Dávalos, Robinson Pacheco, Paola Buritica, Álvaro Álvarez, Madhav P. Bhatta, Jorge Humberto Rojas Palacios, Mark A. James
Software Mentions: 4
Published: almost 8 years ago

10.1098/rsif.2019.0080

Improved forecasts of influenza-associated hospitalization rates with Google Search Trends
Cited by: 14
Author(s): Sasikiran Kandula, Sen Pei, Jeffrey Shaman
Software Mentions: 4
Published: about 7 years ago

10.1186/s12864-016-3130-3

Differential gene expression in Varroa jacobsoni mites following a host shift to European honey bees (Apis mellifera)
Cited by: 15
Author(s): Gladys K. Andino, Michael Gribskov, Denis L. Anderson, Jay D. Evans, Greg J. Hunt
Software Mentions: 4
Published: over 9 years ago

10.1186/s12864-020-06899-y

The wheat pathogen Zymoseptoria tritici senses and responds to different wavelengths of light
Cited by: 7
Author(s): Cassandra B. McCorison, Stephen B. Goodwin
Software Mentions: 4
Published: about 6 years ago

10.1186/s12864-016-2801-4

RNA-Seq analysis of Gtf2ird1 knockout epidermal tissue provides potential insights into molecular mechanisms underpinning Williams-Beuren syndrome
Cited by: 8
Author(s): Susan M. Corley, Cesar P Canales, Paulina Carmona-Mora, Veronica Mendoza-Reinosa, Annemiek Beverdam, Edna C. Hardeman, Marc R. Wilkins, Steve Palmer
Software Mentions: 4
Published: about 10 years ago

10.3389/fonc.2021.683282

Development of Nomograms for Predicting Lymph Node Metastasis and Distant Metastasis in Newly Diagnosed T1-2 Non-Small Cell Lung Cancer: A Population-Based Analysis
Cited by: 7
Author(s): Yihong Qi, Shuangshuang Wu, Linghui Tao, Yunfu Shi, Wenjuan Yang, Lina Zhou, Bo Zhang, Jing Li
Software Mentions: 4
Published: almost 5 years ago

10.1186/s12893-020-01033-x

Prognostic factors in patients who underwent surgery for common peroneal nerve injury: a nest case–control study
Cited by: 2
Author(s): Zhenhui Liu, Maimaiaili Yushan, Yanshi Liu, Aihemaitijiang Yusufu
Software Mentions: 4
Published: over 5 years ago

10.1097/MD.0000000000021087

Moxibustion for the side effects of surgical therapy and chemotherapy in patients with gastric cancer
Cited by: 5
Author(s): Shuqing Liu, Jianrong Chen, Yanping Wang, Xu Zhou, Weifeng Zhu
Software Mentions: 4
Published: about 6 years ago

10.1371/journal.pone.0252533

Large scale meta-analysis of preclinical toxicity data for target characterisation and hypotheses generation
Cited by: 2
Author(s): Jordi Muñoz‐Muriedas
Software Mentions: 4
Published: about 5 years ago

10.3390/cells10051163

Anthracyclins Increase PUFAs: Potential Implications in ER Stress and Cell Death
Cited by: 9
Author(s): David Balgoma, Fredrik Kullenberg, Carlemi Calitz, Maria Kopsida, Femke Heindryckx, Hans Lennernäs, Mikael Hedeland
Software Mentions: 4
Published: about 5 years ago

10.3389/fonc.2021.736573

Development and Validation of a Clinical Prognostic Nomogram for Esophageal Adenocarcinoma Patients
Cited by: 11
Author(s): Chengchen Shao, Yue Yu, Qi-fan Li, Xiaolong Liu, Haiyan Song, Yi Shen, Jun Yi
Software Mentions: 4
Published: almost 5 years ago

10.1186/s12864-019-6018-1

Transcriptome profile of Corynebacterium pseudotuberculosis in response to iron limitation
Cited by: 19
Author(s): Izabela Coimbra Ibraim, Mariana Teixeira Dornelles Parise, Doglas Parise, Michelle Zibetti Tadra Sfeir, Thiago Luiz de Paula Castro, Alice R. Wattam, Preetam Ghosh, Debmalya Barh, Emannuel Maltempi Souza, Aristóteles Goés-Neto, Anne Cybelle Pinto Gomide, Vasco Azevedo
Software Mentions: 4
Published: almost 7 years ago

10.1186/s12864-019-6147-6

The role of nitric oxide during embryonic wound healing
Cited by: 16
Author(s): Pavel Abaffy, Silvie Tománková, Ravindra Naraine, Mikael Kubista, Radek Šindelka
Software Mentions: 4
Published: over 6 years ago

10.1186/s12864-020-06871-w

Genome compartmentalization predates species divergence in the plant pathogen genus Zymoseptoria
Cited by: 29
Author(s): Alice Feurtey, Cécile Lorrain, Daniel Croll, Christoph Eschenbrenner, Michael Freitag, Michael Habig, Janine Haueisen, Mareike Möller, Klaas Schotanus, Eva H. Stukenbrock
Software Mentions: 4
Published: almost 6 years ago

10.1186/s12864-017-4362-6

Comparative ribosome profiling uncovers a dominant role for translational control in Toxoplasma gondii
Cited by: 20
Author(s): Musa A. Hassan, Juan J. Vasquez, Guo-Liang Chew, Markus Meissner, T. Nicolai Siegel
Software Mentions: 4
Published: over 8 years ago

10.1186/s12864-020-06909-z

Integrating RNA-Seq with GWAS reveals novel insights into the molecular mechanism underpinning ketosis in cattle
Cited by: 23
Author(s): Ze Yan, Hanyu Huang, Ellen Freebern, D. R. dos Santos, Dongmei Dai, Jingfang Si, Chengbin Ma, Jie Cao, Gang Guo, George E. Liu, Li Ma, Lingzhao Fang, Yi Zhang
Software Mentions: 4
Published: about 6 years ago

10.1186/s12864-019-5444-4

The plastid and mitochondrial genomes of Eucalyptus grandis
Cited by: 31
Author(s): Desré Pinard, Alexander Andrew Myburg, Eshchar Mizrachi
Software Mentions: 4
Published: over 7 years ago

10.1186/s12866-021-02159-5

Azithromycin and the microbiota of cystic fibrosis sputum
Cited by: 10
Author(s): Nicole Acosta, Christina S. Thornton, Michael G. Surette, Ranjani Somayaji, Laura Rossi, Harvey Rabin, Michael D. Parkins
Software Mentions: 4
Published: over 5 years ago

10.1186/s12870-014-0276-5

Populus tremula (European aspen) shows no evidence of sexual dimorphism
Cited by: 46
Author(s): Kathryn M. Robinson, Nicolas Delhomme, Niklas Mähler, Bastian Schiffthaler, Jenny Önskog, Benedicte Riber Albrectsen, Pär K. Ingvarsson, Torgeir R. Hvidsten, Stefan Jansson, Nathaniel R. Street
Software Mentions: 4
Published: almost 12 years ago

10.3389/fninf.2017.00010

Automatic and Precise Localization and Cortical Labeling of Subdural and Depth Intracranial Electrodes
Cited by: 29
Author(s): Chaoyi Qin, Zheng Tan, Yali Pan, Yanyan Li, Lin Wang, Liqiang Ren, Wenjing Zhou, Liang Wang
Software Mentions: 4
Published: over 9 years ago

10.3389/fpsyt.2021.682495

Common Data Elements, Scalable Data Management Infrastructure, and Analytics Workflows for Large-Scale Neuroimaging Studies
Cited by: 4
Author(s): Rayus Kuplicki, James Touthang, Obada Al Zoubi, Ahmad Mayeli, Masaya Misaki, NeuroMAP-Investigators, Robin L. Aupperle, T. Kent Teague, Brett A. McKinney, Martin P. Paulus, Jerzy Bodurka
Software Mentions: 4
Published: about 5 years ago

10.1186/s12870-019-2202-3

Root system traits impact early fire blight susceptibility in apple (Malus × domestica)
Cited by: 11
Author(s): Jugpreet Singh, Jack Fabrizio, Elsa Desnoues, Julliany Pereira Silva, Wolfgang Busch, Awais Khan
Software Mentions: 4
Published: over 6 years ago

10.1186/s12879-021-06324-z

Estimating regional prevalence of chronic hepatitis C with a capture-recapture analysis
Cited by: 0
Author(s): Patricia A. M. Kracht, Joop E. Arends, Andy I. M. Hoepelman, Mirjam Kretzschmar
Software Mentions: 4
Published: about 5 years ago

10.1186/s12891-020-03705-4

Range of abduction in patients with Legg-Calvé-Perthes disease – a nationwide register-based cohort study
Cited by: 2
Author(s): Ahmad El-Harbiti, Yasmin D. Hailer
Software Mentions: 4
Published: over 5 years ago

10.7717/peerj.4970

Archaeal and bacterial diversity and community composition from 18 phylogenetically divergent sponge species in Vietnam
Cited by: 22
Author(s): Ton That Huu Dat, Georg Steinert, Nguyễn Thị Kim Cúc, Hauke Smidt, Detmer Sipkema
Software Mentions: 4
Published: about 8 years ago

10.7717/peerj.3043

Effectiveness of removals of the invasive lionfish: how many dives are needed to deplete a reef?
Cited by: 26
Author(s): Paolo Usseglio, Jason D. Selwyn, Alan M. Downey‐Wall, J. Derek Hogan
Software Mentions: 4
Published: over 9 years ago

10.1002/cam4.3035

Develop a circular RNA–related regulatory network associated with prognosis of gastric cancer
Cited by: 9
Author(s): Shuxun Wei, Shang‐Hua Teng, Jun Yao, Wenchao Gao, Jiachen Zang, Guangyong Wang, Zhiqian Hu
Software Mentions: 4
Published: almost 6 years ago

10.26508/lsa.202000961

A role for condensin in mediating transcriptional adaptation to environmental stimuli
Cited by: 4
Author(s): Lucy Lancaster, Harshil Patel, Gavin Kelly, Frank Uhlmann
Software Mentions: 4
Published: about 5 years ago

10.1186/s12859-021-04138-z

Dynamic model updating (DMU) approach for statistical learning model building with missing data
Cited by: 3
Author(s): Richa Jain, Wei Xu
Software Mentions: 4
Published: about 5 years ago

10.26508/lsa.201800080

RNase E cleavage shapes the transcriptome of<i>Rhodobacter sphaeroides</i>and strongly impacts phototrophic growth
Cited by: 20
Author(s): Konrad U. Förstner, Carina M. Reuscher, Kerstin Haberzettl, Lennart Weber, Gabriele Klug
Software Mentions: 4
Published: almost 8 years ago

10.1186/s12934-021-01583-6

Molecular engineering improves antigen quality and enables integrated manufacturing of a trivalent subunit vaccine candidate for rotavirus
Cited by: 6
Author(s): Neil C. Dalvie, Joseph Brady, Laura E. Crowell, Mary Kate Tracey, Andrew M. Biedermann, Kawaljit Kaur, John M. Hickey, D. Lee Kristensen, Alexandra Bonnyman, Sergio A. Rodriguez-Aponte, Charles A. Whittaker, Marina Bok, Celina G. Vega, Tarit Mukhopadhyay, Sangeeta B. Joshi, David B. Volkin, Viviana Parreño, Kerry R. Love, J. Christopher Love
Software Mentions: 4
Published: about 5 years ago

10.1007/s00248-019-01424-5

Early Colonization of Weathered Polyethylene by Distinct Bacteria in Marine Coastal Seawater
Cited by: 81
Author(s): Gabriel Erni-Cassola, Robyn J. Wright, Matthew I. Gibson, Joseph Alexander Christie-Oleza
Software Mentions: 4
Published: almost 7 years ago

10.1186/s40168-020-00803-2

Characterization of antibiotic resistance and host-microbiome interactions in the human upper respiratory tract during influenza infection
Cited by: 38
Author(s): Lingdi Zhang, Christian V. Forst, Aubree Gordon, Gabrielle Gussin, Adam Geber, Porfirio J. Fernandez, Tao Ding, Lauren Lashua, Minghui Wang, Ángel Balmaseda, Richard Bonneau, Bin Zhang, Elodie Ghedin
Software Mentions: 4
Published: over 6 years ago

10.1186/s40168-021-01103-z

The microbial metabolite p-Cresol induces autistic-like behaviors in mice by remodeling the gut microbiota
Cited by: 66
Author(s): Patricia Bermudez-Martin, Jérôme A.J. Becker, Nicolas Caramello, Sebastian P. Fernandez, Renan Costa Campos, Juliette Canaguier, Susana Barbosa, Laura Martinez‐Gili, Antonis Myridakis, Marc Dumas, Aurélia Bruneau, Claire Cherbuy, Philippe Langella, Jacques Crinon, Jean Marie Launay, Joëlle Chabry, Jacques Barik, Julie Le Merrer, Nicolas Glaichenhaus, Laetitia Davidovic
Software Mentions: 4
Published: about 5 years ago

10.1186/s40168-021-01016-x

Revealing taxon-specific heavy metal-resistance mechanisms in denitrifying phosphorus removal sludge using genome-centric metaproteomics
Cited by: 27
Author(s): Yuan Lin, Liye Wang, Ke Xu, Kan Li, Hongqiang Ren
Software Mentions: 4
Published: over 5 years ago

10.1186/s40168-020-00859-0

Engineering CRISPR/Cas9 to mitigate abundant host contamination for 16S rRNA gene-based amplicon sequencing
Cited by: 22
Author(s): Luyang Song, Kabin Xie
Software Mentions: 4
Published: about 6 years ago

10.3390/microorganisms9030530

The Adult Phenylketonuria (PKU) Gut Microbiome
Cited by: 16
Author(s): Viviana J. Mancilla, Allison E. Mann, Yan Zhang, Michael S. Allen
Software Mentions: 4
Published: over 5 years ago

10.3390/microorganisms8091347

Gut Microbial Changes in Diabetic db/db Mice and Recovery of Microbial Diversity upon Pirfenidone Treatment
Cited by: 17
Author(s): Harinder Singh, Sadaaki Miyamoto, Manjula Darshi, Manolito Torralba, Ki-Ryong Kwon, Kumar Sharma, Rembert Pieper
Software Mentions: 4
Published: almost 6 years ago

10.3390/microorganisms8020214

Succession and Colonization Dynamics of Endolithic Phototrophs within Intertidal Carbonates
Cited by: 11
Author(s): Daniel Roush, Ferrán García-Pichel
Software Mentions: 4
Published: over 6 years ago

10.3390/microorganisms9040718

Effects of Clinical Wastewater on the Bacterial Community Structure from Sewage to the Environment
Cited by: 5
Author(s): Ilse Verburg, H. Pieter J. van Veelen, Karola Waar, John W. A. Rossen, Alex Friedrich, Lucía Hernández Leal, Silvia García-Cobos, Heike Schmitt
Software Mentions: 4
Published: over 5 years ago

10.1186/s13229-019-0306-0

Cellular and molecular characterization of multiplex autism in human induced pluripotent stem cell-derived neurons
Cited by: 13
Author(s): Emily M.A. Lewis, Kesavan Meganathan, Dustin Baldridge, Paul Gontarz, Bo Zhang, Azad Bonni, John N. Constantino, Kristen L. Kroll
Software Mentions: 4
Published: over 6 years ago

10.1093/molbev/msv016

The Avian Transcriptome Response to Malaria Infection
Cited by: 71
Author(s): Elin Videvall, Charlie K. Cornwallis, Vaidas Palinauskas, Gediminas Valkiūnas, Olof Hellgren
Software Mentions: 4
Published: over 11 years ago

10.1093/molbev/msx190

Global Dosage Compensation Is Ubiquitous in Lepidoptera, but Counteracted by the Masculinization of the Z Chromosome
Cited by: 37
Author(s): Ann Kathrin Huylmans, Ariana Macon, Beatriz Vicoso
Software Mentions: 4
Published: about 9 years ago

10.1093/molbev/msaa206

Amoeba Genome Reveals Dominant Host Contribution to Plastid Endosymbiosis
Cited by: 20
Author(s): Duckhyun Lhee, Jun Mo Lee, Khaoula Ettahi, Chung Hyun Cho, Ji San Ha, Ya Fan Chan, Udi Zelzion, Timothy G. Stephens, Dana C. Price, Arwa Gabr, Eva C. M. Nowack, Debashish Bhattacharya, Hwan Su Yoon
Software Mentions: 4
Published: almost 6 years ago

10.1128/MCB.00668-17

The <i>Caenorhabditis elegans</i> Ortholog of TDP-43 Regulates the Chromatin Localization of the Heterochromatin Protein 1 Homolog HPL-2
Cited by: 12
Author(s): Tassa Saldi, Patrick Gonzales, Alfonso Garrido-Lecca, Vishantie Dostal, Christine M. Roberts, Leonard Petrucelli, Christopher D. Link
Software Mentions: 4
Published: almost 8 years ago

10.7717/peerj.4600

GMPR: A robust normalization method for zero-inflated count data with application to microbiome sequencing data
Cited by: 146
Author(s): Li Chen, James Reeve, Lujun Zhang, Shengbing Huang, Xuefeng Wang, Jun Chen
Software Mentions: 4
Published: over 8 years ago

10.7717/peerj.7696

The co-expression networks of differentially expressed RBPs with TFs and LncRNAs related to clinical TNM stages of cancers
Cited by: 4
Author(s): Shuaibin Lian, Liansheng Li, Yongjie Zhou, Zixiao Liu, Lei Wang
Software Mentions: 4
Published: almost 7 years ago

10.7717/peerj.3543

A longitudinal study of the diabetic skin and wound microbiome
Cited by: 83
Author(s): Melissa Gardiner, Mauro Vicaretti, Jill Sparks, Sunaina Bansal, Stephen Bush, Mengmeng Liu, Aaron E. Darling, Elizabeth J. Harry, Catherine Burke
Software Mentions: 4
Published: about 9 years ago

10.7717/peerj.6694

Integrated analysis reveals five potential ceRNA biomarkers in human lung adenocarcinoma
Cited by: 14
Author(s): Yu Liu, Deyao Xie, Zuhua He, Liangcheng Zheng
Software Mentions: 4
Published: about 7 years ago

10.3390/plants9091149

Response of Downy Oak (Quercus pubescens Willd.) to Climate Change: Transcriptome Assembly, Differential Gene Analysis and Targeted Metabolomics
Cited by: 7
Author(s): Jean-Philippe Mévy, Béatrice Loriod, Xi Liu, Erwan Corre, Magali Torres, Michael Büttner, Anne Haguenauer, Ilja M. Reiter, Catherine Fernandez, Thierry Gauquelin
Software Mentions: 4
Published: almost 6 years ago

10.1371/journal.pbio.3000374

Tagger—A Swiss army knife for multiomics to dissect cell type–specific mechanisms of gene expression in mice
Cited by: 11
Author(s): Lech Kaczmarczyk, V. Bansal, Ashish Rajput, Raza-Ur Rahman, Wiesław Krzyżak, Joachim Degen, Stefanie Poll, Martin Fuhrmann, Stefan Bonn, Walker S. Jackson
Software Mentions: 4
Published: almost 7 years ago

10.1371/journal.pbio.2003648

A direct link between MITF, innate immunity, and hair graying
Cited by: 37
Author(s): Melissa L. Harris, Temesgen Fufa, Joseph W. Palmer, Sandeep S. Joshi, Denise M. Larson, Arturo Incao, Derek Gildea, Niraj Trivedi, Autumne N Lee, Chi-Ping Day, Helen Michael, Thomas J. Hornyak, Glenn Merlino, Nisc Comparative Sequencing Program, William J. Pavan
Software Mentions: 4
Published: about 8 years ago

10.1093/bioinformatics/btw417

SSBD: a database of quantitative data of spatiotemporal dynamics of biological phenomena
Cited by: 35
Author(s): Yukako Tohsato, Kenneth H. L. Ho, Koji Kyoda, Shuichi Onami
Software Mentions: 4
Published: about 10 years ago

10.1186/s12911-019-0750-y

A visual interactive analytic tool for filtering and summarizing large health data sets coded with hierarchical terminologies (VIADS)
Cited by: 8
Author(s): Xia Jing, Matthew Emerson, David Masters, Matthew L. Brooks, Jacob Buskirk, Nasseef Abukamail, Chang Liu, James J. Cimino, Jay H. Shubrook, Sonsoles de Lacalle, Yuchun Zhou, Vimla L. Patel
Software Mentions: 4
Published: over 7 years ago

10.1042/BSR20210583

Identification and validation of <i>ADME</i> genes as prognosis and therapy markers for hepatocellular carcinoma patients
Cited by: 4
Author(s): Jukun Wang, Ke Han, Chao Zhang, Xin Chen, Li Yu, Linzhong Zhu, Tao Luo
Software Mentions: 4
Published: about 5 years ago

10.1371/journal.pmed.1002683

Variable generalization performance of a deep learning model to detect pneumonia in chest radiographs: A cross-sectional study
Cited by: 809
Author(s): John R. Zech, Marcus A. Badgeley, Manway Liu, Anthony Costa, J. Titano, Eric K. Oermann
Software Mentions: 4
Published: over 7 years ago

10.1186/s12983-017-0208-y

Evidence for a postreproductive phase in female false killer whales Pseudorca crassidens
Cited by: 22
Author(s): Theoni Photopoulou, Ines Maria Ferreira, Peter B. Best, Toshio Kasuya, Helene Marsh
Software Mentions: 4
Published: about 9 years ago

10.1038/s41598-020-73060-w

Automatic classification of healthy and disease conditions from images or digital standard 12-lead electrocardiograms
Cited by: 18
Author(s): Вадим Глинер, Noam Keidar, В. В. Макаров, Arutyun Avetisyan, Assaf Schuster, Yael Yaniv
Software Mentions: 4
Published: almost 6 years ago

10.1038/s41598-020-80534-4

Clinical characteristics and overall survival nomogram of second primary malignancies after prostate cancer, a SEER population-based study
Cited by: 10
Author(s): Yi Liu, Peipei Zhang, Yinghao Zhang, Lichuan Zheng, Wenbo Xu, Dongtao Hou, Zhengjun Kang
Software Mentions: 4
Published: over 5 years ago

10.1186/s12859-017-1663-3

“gnparser”: a powerful parser for scientific names based on Parsing Expression Grammar
Cited by: 10
Author(s): Dmitry Mozzherin, Alexander A. Myltsev, David J. Patterson
Software Mentions: 4
Published: about 9 years ago

10.1371/journal.pcbi.1008061

Protein sequence optimization with a pairwise decomposable penalty for buried unsatisfied hydrogen bonds
Cited by: 16
Author(s): Brian Coventry, David Baker
Software Mentions: 4
Published: over 5 years ago

10.1186/s12864-020-6635-8

Tracy: basecalling, alignment, assembly and deconvolution of sanger chromatogram trace files
Cited by: 48
Author(s): Tobias Rausch, Markus Hsi-Yang Fritz, Andreas Untergasser, Vladimı́r Beneš
Software Mentions: 4
Published: over 6 years ago

10.1038/s41598-018-26239-1

A 2-transcript host cell signature distinguishes viral from bacterial diarrhea and it is influenced by the severity of symptoms
Cited by: 19
Author(s): Ruth Barral-Arca, Jacobo Pardo‐Seco, Federico Martinón‐Torres, Antonio Salas
Software Mentions: 4
Published: about 8 years ago

10.1186/s13072-020-00355-7

N6-Adenosine methylation on mRNA is recognized by YTH2 domain protein of human malaria parasite Plasmodium falciparum
Cited by: 11
Author(s): Gayathri Govindaraju, Rajashekar Varma Kadumuri, Devadathan Valiyamangalath Sethumadhavan, C. A. Jabeena, Sreenivas Chavali, Arumugam Rajavelu
Software Mentions: 4
Published: almost 6 years ago

10.1371/journal.pone.0203508

Origins and geographic diversification of African rice (Oryza glaberrima)
Cited by: 17
Author(s): Margaretha A. Veltman, Jonathan M. Flowers, Tinde van Andel, M. Eric Schranz
Software Mentions: 4
Published: over 7 years ago

10.1371/journal.pone.0177459

Singularity: Scientific containers for mobility of compute
Cited by: 895
Author(s): Gregory M. Kurtzer, Vanessa Sochat, Michael Bauer
Software Mentions: 4
Published: about 9 years ago

10.1534/g3.118.200521

Identification of Candidate Genes Controlling Black Seed Coat and Pod Tip Color in Cowpea (<i>Vigna unguiculata</i>[L.] Walp)
Cited by: 31
Author(s): Ira A. Herniter, María Muñoz‐Amatriaín, Sassoum Lo, Yi‐Ning Guo, Timothy J. Close
Software Mentions: 4
Published: almost 8 years ago

10.1371/journal.pone.0249583

Innovation indicators based on firm websites—Which website characteristics predict firm-level innovation activity?
Cited by: 8
Author(s): Janna Axenbeck, Patrick Breithaupt
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0212526

Long-term exposure to more frequent disturbances increases baseline carbon in some ecosystems: Mapping and quantifying the disturbance frequency-ecosystem C relationship
Cited by: 7
Author(s): Brian Buma, Thomas L. Thompson
Software Mentions: 4
Published: over 7 years ago

10.1534/g3.120.401824

A Novel Mapping Strategy Utilizing Mouse Chromosome Substitution Strains Identifies Multiple Epistatic Interactions That Regulate Complex Traits
Cited by: 3
Author(s): Anna Miller, Anlu Chen, Jacquelaine Bartlett, Li Wang, Scott M. Williams, David A. Buchner
Software Mentions: 4
Published: over 5 years ago

10.1186/s13059-020-02007-1

Influenza infection elicits an expansion of gut population of endogenous Bifidobacterium animalis which protects mice against infection
Cited by: 62
Author(s): Qiang Zhang, Jin Hu, Jia-Wu Feng, Xiaoru Hu, Wang Ting, Wenxiao Gong, Kun Huang, Yi-Xiong Guo, Zhong Zou, Xian Lin, Run Zhou, Yuqi Yuan, Anding Zhang, Hong Wei, Gang Cao, Chen Liu, Lingling Chen, Meilin Jin
Software Mentions: 4
Published: about 6 years ago

10.3389/fdata.2020.00022

The ADC API: A Web API for the Programmatic Query of the AIRR Data Commons
Cited by: 22
Author(s): Scott Christley, Ademar Aguiar, George Blanck, Felix Breden, Syed Ahmad Chan Bukhari, Christian E. Busse, Jerome Jaglale, Srilakshmy L. Harikrishnan, Uri Laserson, Bjoern Peters, Artur Rocha, Chaim A. Schramm, Sarah E. Taylor, Jason A. Vander Heiden, Bojan Zimonja, Corey T. Watson, Brian Corrie, Lindsay G. Cowell
Software Mentions: 4
Published: about 6 years ago

10.1002/acn3.50924

Impaired cognition predicts the risk of hospitalization and death in cirrhosis
Cited by: 9
Author(s): Minjee Kim, Eric M. Liotta, Phyllis C. Zee, Daniel Ganger, Daniela P. Ladner, Ameeta Karmarkar, John Devin Peipert, Farzaneh A. Sorond, Shyam Prabhakaran, Kathryn J. Reid, Andrew M. Naidech, Matthew B. Maas
Software Mentions: 4
Published: almost 7 years ago

10.3389/fendo.2021.714561

Biased Coupling to β-Arrestin of Two Common Variants of the CB2 Cannabinoid Receptor
Cited by: 9
Author(s): Gábor Turu, Eszter Soltész‐Katona, András Tóth, C.C. Juhasz, Miklós Cserző, Ádám Misák, András Balla, Marc G. Caron, László Hunyady
Software Mentions: 4
Published: almost 5 years ago

10.1038/s41597-019-0086-6

Posterior samples of the parameters of binary black holes from Advanced LIGO, Virgo’s second observing run
Cited by: 8
Author(s): S. De, C. Biwer, Collin D. Capano, A. Nitz, D. A. Brown
Software Mentions: 4
Published: about 7 years ago

10.5334/egems.197

The Effect of the Hospital Readmission Reduction Program on the Duration of Observation Stays: Using Regression Discontinuity to Estimate Causal Effects
Cited by: 3
Author(s): Jordan Albritton, Tom Belnap, Lucy A. Savitz
Software Mentions: 4
Published: over 8 years ago

10.7717/peerj.2988

Compacting and correcting Trinity and Oases RNA-Seq <i>de novo</i> assemblies
Cited by: 84
Author(s): Cédric Cabau, Frédéric Escudié, Anis Djari, Yann Guiguen, Julien Bobe, Christophe Klopp
Software Mentions: 4
Published: over 9 years ago

10.1136/ard.2008.096172

Is the blood B-cell subset profile diagnostic for Sjögren syndrome?
Cited by: 72
Author(s): Aymeric Binard, Laëtitia Le Pottier, Valérie Devauchelle‐Pensec, Alain Saraux, Pierre Youinou, Jacques‐Olivier Pers
Software Mentions: 4
Published: almost 18 years ago

10.1371/journal.pone.0238090

Simulation of the COVID-19 epidemic on the social network of Slovenia: Estimating the intrinsic forecast uncertainty
Cited by: 22
Author(s): Žiga Zaplotnik, Aleksandar Gavrić, Luka Medic
Software Mentions: 4
Published: almost 6 years ago

10.1371/journal.pone.0001344

Adipose Gene Expression Prior to Weight Loss Can Differentiate and Weakly Predict Dietary Responders
Cited by: 48
Author(s): David M. Mutch, Ramzi Temanni, Corneliu Hénégar, Florence Combes, Véronique Pelloux, Claus Holst, Thorkild I A Sørensen, Arne Astrup, J. Alfredo Martínez, Wim H. M. Saris, Nathalie Viguerie, Dominique Langin, Jean-Daniel Zucker, Karine Clément
Software Mentions: 4
Published: over 18 years ago

10.1038/s41598-017-10558-w

Development and validation of a multivariate predictive model for rheumatoid arthritis mortality using a machine learning approach
Cited by: 45
Author(s): José M. Lezcano-Valverde, Fernando Salazar, Leticia León, Esther Toledano, Juan A. Jover, Eduardo Soudah, Isidoro González‐Álvaro, Lydia Abásolo, Luis Rodríguez‐Rodríguez
Software Mentions: 4
Published: almost 9 years ago

10.3390/s18124125

Model Driven Development Applied to Complex Event Processing for Near Real-Time Open Data
Cited by: 6
Author(s): Pedro J. Clemente, Adolfo Lozano-Tello
Software Mentions: 4
Published: over 7 years ago

10.1186/s12911-018-0679-6

A decision support system to follow up and diagnose primary headache patients using semantically enriched data
Cited by: 20
Author(s): Gilles Vandewiele, Femke De Backere, Kiani Lannoye, Maarten Vanden Berghe, Olivier Janssens, Sofie Van Hoecke, Vincent Keereman, Koen Paemeleire, Femke Ongenae, Filip De Turck
Software Mentions: 4
Published: over 7 years ago

10.1038/sdata.2018.55

Massively parallel recordings in macaque motor cortex during an instructed delayed reach-to-grasp task
Cited by: 41
Author(s): Thomas Brochier, Lyuba Zehl, Yaoyao Hao, Margaux Duret, Julia Sprenger, Michael Denker, Sonja Grün, Alexa Riehle
Software Mentions: 4
Published: over 8 years ago

10.3389/fonc.2021.618677

Development and Validation a Nomogram Incorporating CT Radiomics Signatures and Radiological Features for Differentiating Invasive Adenocarcinoma From Adenocarcinoma In Situ and Minimally Invasive Adenocarcinoma Presenting as Ground-Glass Nodules Measuring 5-10mm in Diameter
Cited by: 11
Author(s): Lili Shi, Wei Shi, Xueqing Peng, Yi Zhan, Linxiao Zhou, Yunpeng Wang, Mingxiang Feng, Jing Zhao, Fei Shan, Lei Liu
Software Mentions: 4
Published: over 5 years ago

10.1186/s12915-021-01122-0

Single-cell analysis of cell fate bifurcation in the chordate Ciona
Cited by: 4
Author(s): Konner Winkley, Wendy Reeves, Michael Veeman
Software Mentions: 4
Published: almost 5 years ago

10.12688/f1000research.21027.2

A hands-on introduction to querying evolutionary relationships across multiple data sources using SPARQL
Cited by: 0
Author(s): Ana Claudia Sima, Christophe Dessimoz, Kurt Stockinger, Monique Zahn-Zabal, Tarcisio Mendes de Farias
Software Mentions: 4
Published: about 6 years ago

10.1186/s12874-017-0332-6

Time-dependent ROC curve analysis in medical research: current methods and applications
Cited by: 446
Author(s): Adina Najwa Kamarudin, Trevor F. Cox, Ruwanthi Kolamunnage-Donà
Software Mentions: 4
Published: over 9 years ago

10.1371/journal.pone.0237749

A systematic review of fuzzing based on machine learning techniques
Cited by: 26
Author(s): Yan Wang, Peng Jia, Luping Liu, Cheng Huang, Zhonglin Liu
Software Mentions: 4
Published: almost 6 years ago

10.3390/s21010010

MUP: Simplifying Secure Over-The-Air Update with MQTT for Constrained IoT Devices
Cited by: 4
Author(s): Kristina Sahlmann, Vera Clemens, Michael A. Nowak, Bettina Schnor
Software Mentions: 4
Published: over 5 years ago

10.1002/1878-0261.12367

ABCA1 overexpression worsens colorectal cancer prognosis by facilitating tumour growth and caveolin‐1‐dependent invasiveness, and these effects can be ameliorated using the <scp>BET</scp> inhibitor apabetalone
Cited by: 70
Author(s): Cristina Aguirre-Portolés, Jaime Feliú, Guillermo Reglero, Ana Ramı́rez de Molina
Software Mentions: 4
Published: almost 8 years ago