10.1038/s41598-019-53811-0

An integrated nomogram combining lncRNAs classifier and clinicopathologic factors to predict the recurrence of head and neck squamous cell carcinoma
Cited by: 4
Author(s): Jie Cui, Qingquan Wen, Xiaojie Tan, Jinsong Piao, Qiong Zhang, Qian Wang, Lizhen He, Yan Wang, Zhe Chen, Genglong Liu
Software Mentions: 5
Published: over 6 years ago

10.3389/fpsyg.2017.01466

Psychometric Properties of a Multidimensional Scale of Sense of Community in the School
Cited by: 22
Author(s): Gabriele Prati, Elvira Cicognani, Cinzia Albanesi
Software Mentions: 5
Published: almost 9 years ago

10.3389/fpsyg.2020.01299

Development and Validation of a Self-Determination Theory-Based Measure of Motivation to Exercise and Diet in Children
Cited by: 20
Author(s): Giada Pietrabissa, Alessandro Rossi, Maria Borrello, Gian Mauro Manzoni, Stefania Mannarini, Gianluca Castelnuovo, Enrico Molinari
Software Mentions: 5
Published: about 6 years ago

10.1186/1471-2105-10-203

Integrated analysis of DNA copy number and gene expression microarray data using gene sets
Cited by: 57
Author(s): Renée X. de Menezes, Marten Boetzer, Melle Sieswerda, Gert‐Jan B. van Ommen, Judith M. Boer
Software Mentions: 5
Published: about 17 years ago

10.3390/ijerph18062832

Impact of Covid-19 Lockdown on Availability of Drinking Water in the Arsenic-Affected Ganges River Basin
Cited by: 17
Author(s): Srimanti Duttagupta, Soumendra N. Bhanja, Avishek Dutta, S. Sarkar, M. Chakraborty, Ashok Ghosh, Debapriya Mondal, Abhijit Mukherjee
Software Mentions: 5
Published: over 5 years ago

10.7554/eLife.63450

Temporal evolution of single-cell transcriptomes of Drosophila olfactory projection neurons
Cited by: 28
Author(s): Qijing Xie, Maria Brbić, Felix Horns, Sai Saroja Kolluru, Robert C. Jones, Jiefu Li, Anay R Reddy, Anthony Xie, Sayeh Kohani, Zhuoran Li, Colleen N. McLaughlin, Tongchao Li, Chuanyun Xu, David Vacek, David J. Luginbuhl, Jure Leskovec, Stephen R. Quake, Liqun Luo, Hongjie Li
Software Mentions: 5
Published: over 5 years ago

10.1186/1756-3305-7-249

Individual experience affects host choice in malaria vector mosquitoes
Cited by: 21
Author(s): Amélie Vantaux, Thierry Léfèvre, Roch K. Dabiré, Anna Cohuet
Software Mentions: 5
Published: over 12 years ago

10.1371/journal.pone.0215497

Gut microbiota features associated with Clostridioides difficile colonization in puppies
Cited by: 15
Author(s): Alexander S. F. Berry, Brendan J Kelly, Denise Barnhart, Douglas G. Kelly, Daniel P. Beiting, Robert N. Baldassano, Laurel E. Redding
Software Mentions: 5
Published: almost 7 years ago

10.1371/journal.pone.0238972

India nudges to contain COVID-19 pandemic: A reactive public policy analysis using machine-learning based topic modelling
Cited by: 58
Author(s): Ramit Debnath, Ronita Bardhan
Software Mentions: 5
Published: almost 6 years ago

10.1371/journal.pone.0222690

A method of back-calculating the log odds ratio and standard error of the log odds ratio from the reported group-level risk of disease
Cited by: 2
Author(s): Dapeng Hu, Chong Wang, Annette M. O’Connor
Software Mentions: 5
Published: over 6 years ago

10.1371/journal.pone.0146581

Neurokernel: An Open Source Platform for Emulating the Fruit Fly Brain
Cited by: 21
Author(s): Lev E. Givon, Aurel A. Lazar
Software Mentions: 5
Published: over 10 years ago

10.7150/thno.55209

<i>Candida albicans</i> disorder is associated with gastric carcinogenesis
Cited by: 48
Author(s): Min Zhong, Yubo Xiong, Jiabao Zhao, Zhi Gao, Jianchao Ma, Zhengxin Wu, Yongxi Song, Xuehui Hong
Software Mentions: 5
Published: over 5 years ago

10.1038/srep29251

Overcoming the matched-sample bottleneck: an orthogonal approach to integrate omic data
Cited by: 21
Author(s): Tin Nguyen, Diana Diaz, Rebecca Tagett, Sorin Drăghici
Software Mentions: 5
Published: about 10 years ago

10.1111/jcmm.15205

Characterization of the relationship between FLI1 and immune infiltrate level in tumour immune microenvironment for breast cancer
Cited by: 14
Author(s): Shiyuan Wang, Yakun Wang, Changhong Yu, Yiyin Cao, Yao Yu, Yi Pan, Dongqing Su, Qianzi Lu, Weihao Yang, Yongchun Zuo, Lei Yang
Software Mentions: 5
Published: over 6 years ago

10.1038/s41598-017-14768-0

Genome-wide analysis reveals differential selection involved with copy number variation in diverse Chinese Cattle
Cited by: 17
Author(s): Yang Liu, Lingyang Xu, Bo Zhu, Hong Niu, Wengang Zhang, Jianyin Miao, Xiaowen Shi, Ming Zhang, Yan Chen, Lupei Zhang, Xue Gao, Huijiang Gao, Li Li, George E. Liu, Junya Li
Software Mentions: 5
Published: over 8 years ago

10.3390/jpm11060445

Profiling Delirium Progression in Elderly Patients via Continuous-Time Markov Multi-State Transition Models
Cited by: 2
Author(s): Honoria Ocagli, Danila Azzolina, Rozita Soltanmohammadi, Roqaye Aliyari, Daniele Bottigliengo, Aslıhan Şentürk Acar, Lucia Stivanello, Mario Degan, Ileana Baldi, Giulia Lorenzoni, Darío Gregori
Software Mentions: 5
Published: about 5 years ago

10.7717/peerj.7225

Conflict of interest explains the size of student evaluation of teaching and learning correlations in multisection studies: a meta-analysis
Cited by: 6
Author(s): Bob Uttl, Kelsey Cnudde, Carmela A. White
Software Mentions: 5
Published: about 7 years ago

10.1371/journal.pone.0216588

Meta-analyses of positive psychology interventions: The effects are much smaller than previously reported
Cited by: 96
Author(s): Carmela A. White, Bob Uttl, Mark D. Holder
Software Mentions: 5
Published: about 7 years ago

10.1128/mBio.02333-17

Multisystem Analysis of <i>Mycobacterium tuberculosis</i> Reveals Kinase-Dependent Remodeling of the Pathogen-Environment Interface
Cited by: 49
Author(s): Xavier Carette, John Platig, David C. Young, Michaela Helmel, A. E. Young, Zhe Wang, Lakshmi-Prasad Potluri, Cameron Stuver Moody, Jumei Zeng, Sladjana Prisic, Joseph N. Paulson, Jan Muntel, Ashoka V. R. Madduri, Jorge J. Velarde, Jacob A. Mayfield, Christopher P. Locher, Tiansheng Wang, John Quackenbush, Kyu Y. Rhee, D. Branch Moody, Hanno Steen, Robert N. Husson
Software Mentions: 5
Published: about 8 years ago

10.1098/rsos.201795

Understanding spatial patterns in rape reporting delays
Cited by: 5
Author(s): Konstantin Klemmer, Daniel B. Neill, Stephen A. Jarvis
Software Mentions: 5
Published: over 5 years ago

10.1186/s13059-015-0716-z

Genetic properties of the MAGIC maize population: a new platform for high definition QTL mapping in Zea mays
Cited by: 191
Author(s): Matteo Dell’Acqua, Daniel M. Gatti, G. Pea, Federica Cattonaro, Frederik Coppens, Gabriele Magris, Aye L. Hlaing, Htay Htay Aung, Hilde Nelissen, Joke Baute, Elisabetta Frascaroli, Gary A. Churchill, Dirk Inzé, Michèle Morgante, Mario Enrico Pè
Software Mentions: 5
Published: almost 11 years ago

10.1111/mec.15539

No evidence for accumulation of deleterious mutations and fitness degradation in clonal fish hybrids: Abandoning sex without regrets
Cited by: 16
Author(s): Ján Kočí, Jan Röslein, Jan Pačes, Jan Kotusz, Karel Halačka, Ján Koščo, Jakub Fedorčák, Nataliia Iakovenko, Karel Janko
Software Mentions: 5
Published: almost 6 years ago

10.1038/s41598-021-82067-w

Calcium calmodulin kinase II activity is required for cartilage homeostasis in osteoarthritis
Cited by: 11
Author(s): Giovanna Nalesso, Anne‐Sophie Thorup, S. Eldridge, Armando M. De Palma, Amanpreet Kaur, Kiran Peddireddi, Kevin Blighe, Sharmila Rana, B. Stott, Tonia L. Vincent, B.L. Thomas, Jessica Bertrand, J. Sherwood, Antonella Fioravanti, Costantino Pitzalis, Francesco Dell’Accio
Software Mentions: 5
Published: over 5 years ago

10.1186/s40168-019-0775-6

Root ethylene mediates rhizosphere microbial community reconstruction when chemically detecting cyanide produced by neighbouring plants
Cited by: 89
Author(s): Yan Chen, Michael Bonkowski, Yi Shen, Bryan S. Griffiths, Yuji Jiang, Xiaoyue Wang, Bo Sun
Software Mentions: 5
Published: over 6 years ago

10.1186/s13059-017-1310-3

Topological organization and dynamic regulation of human tRNA genes during macrophage differentiation
Cited by: 26
Author(s): Kevin Van Bortle, Douglas H. Phanstiel, M Snyder
Software Mentions: 5
Published: almost 9 years ago

10.1186/s13014-020-01699-w

Imaging biomarkers of contrast-enhanced computed tomography predict survival in oesophageal cancer after definitive concurrent chemoradiotherapy
Cited by: 4
Author(s): Chengbing Zeng, Tian‐Tian Zhai, Jianzhou Chen, Longjia Guo, Bao-Tian Huang, Hong Guo, Guozhi Lv, Tingting Zhuang, Weitong Liu, Ting Luo, Yanxuan Wu, Guopeng Peng, Derui Li, Chuangzhen Chen
Software Mentions: 5
Published: over 5 years ago

10.1038/s41598-021-94422-y

Semantic segmentation of PolSAR image data using advanced deep learning model
Cited by: 30
Author(s): Rajat Garg, Anil Kumar, Nikunj Bansal, Manish Prateek, Shashi Kumar
Software Mentions: 5
Published: almost 5 years ago

10.5195/jmla.2020.836

What we talk about when we talk about medical librarianship: an analysis of Medical Library Association annual meeting abstracts, 2001-2019.
Cited by: 4
Author(s): Bethany Myers
Software Mentions: 5
Published: about 6 years ago

10.1155/2018/7351902

Elevated and Correlated Expressions of miR-24, miR-30d, miR-146a, and SFRP-4 in Human Abdominal Adipose Tissue Play a Role in Adiposity and Insulin Resistance
Cited by: 32
Author(s): Yury O. Nunez Lopez, Gabriella Garufi, Magdalena Pasarica, Attila A. Seyhan
Software Mentions: 5
Published: over 8 years ago

10.1038/s41598-018-32377-3

A Convenient Non-harm Cervical Spondylosis Intelligent Identity method based on Machine Learning
Cited by: 2
Author(s): Nana Wang, Xi Huang, Yi Rao, Jing Xiao, Junqing Lu, Nian Wang, Cui Li
Software Mentions: 5
Published: over 7 years ago

10.1099/mgen.0.000190

Genetic analysis of invasive Escherichia coli in Scotland reveals determinants of healthcare-associated versus community-acquired infections
Cited by: 32
Author(s): Cosmika Goswami, Stephen Fox, Matthew T. G. Holden, Martin Connor, Alistair Leanord, Thomas J. Evans
Software Mentions: 5
Published: about 8 years ago

10.3390/ani9060351

Large Terrestrial Bird Adapting Behavior in an Urbanized Zone
Cited by: 2
Author(s): Eduardo Roberto Alexandrino, Juliano André Bogoni, Ana Beatriz Navarro, Alex Augusto Abreu Bovo, Rafael M. Gonçalves, Jacob Daniel Charters, Juan Andrea de Domini, Kátia Maria Paschoaletto Micchi de Barros Ferraz
Software Mentions: 5
Published: about 7 years ago

10.1371/journal.pone.0255241

Detecting joint attention events in mother-infant dyads: Sharing looks cannot be reliably identified by naïve third-party observers
Cited by: 2
Author(s): Kirsty E. Graham, Joanna C. Buryn-Weitzel, Nicole J Lahiff, Claudia Wilke, Katie E. Slocombe
Software Mentions: 5
Published: almost 5 years ago

10.1371/journal.pcbi.1005187

MinePath: Mining for Phenotype Differential Sub-paths in Molecular Pathways
Cited by: 24
Author(s): Lefteris Koumakis, Alexandros Kanterakis, Evgenia Kartsaki, Maria Chatzimina, Michalis Zervakis, Manolis Tsiknakis, Despoina Vassou, Dimitris Kafetzopoulos, Kostas Marias, Vassilis Moustakis, George Potamias
Software Mentions: 5
Published: over 9 years ago

10.1371/journal.pone.0226179

Analysis of genome-wide DNA arrays reveals the genomic population structure and diversity in autochthonous Greek goat breeds
Cited by: 13
Author(s): Sofia Michailidou, George Th. Tsangaris, Athina Tzora, Ioannis Skoufos, Georgios Banos, Anagnostis Argiriou, G. Arsenos
Software Mentions: 5
Published: over 6 years ago

10.1186/1471-2164-15-S7-S4

SNPs selection using support vector regression and genetic algorithms in GWAS
Cited by: 11
Author(s): Fabrízzio Condé de Oliveira, Carlos Cristiano Hasenclever Borges, Fernanda Nascimento Almeida, Fabyano Fonseca e Silva, Rui da Silva Verneque, Marcos Vinícius Gualberto Barbosa da Silva, Wagner Arbex
Software Mentions: 5
Published: almost 12 years ago

10.15252/msb.202010138

Natural variants suppress mutations in hundreds of essential genes
Cited by: 10
Author(s): Leopold Parts, Amandine Batté, Maykel Lopes, Michael Wai-Keong Yuen, Meredith Laver, Bryan-Joseph San Luis, Jia-Xing Yue, Carles Pons, Elise Eray, Patrick Aloy, Gianni Liti, Jolanda van Leeuwen
Software Mentions: 5
Published: about 5 years ago

10.1371/journal.pone.0097277

GPU-BSM: A GPU-Based Tool to Map Bisulfite-Treated Reads
Cited by: 6
Author(s): Andrea Manconi, Alessandro Orro, Elias Manca, Giuliano Armano, Luciano Milanesi
Software Mentions: 5
Published: about 12 years ago

10.1016/j.stem.2020.09.001

Loss of Extreme Long-Range Enhancers in Human Neural Crest Drives a Craniofacial Disorder
Cited by: 86
Author(s): Hannah K. Long, Marco Osterwalder, Ian Welsh, Karissa Hansen, James O. J. Davies, Yiran E. Liu, Mervenaz Koska, Alexander T. Adams, Robert Aho, Neiha Arora, Kazuya Ikeda, Ruth M. Williams, Tatjana Sauka‐Spengler, Matthew H. Porteus, Tim Mohun, Diane E. Dickel, Tomek Swigut, Jim R. Hughes, Douglas R. Higgs, Axel Visel, Licia Selleri, Joanna Wysocka
Software Mentions: 5
Published: over 5 years ago

10.7717/peerj.11580

Detection of genomic regions associated malformations in newborn piglets: a machine-learning approach
Cited by: 0
Author(s): Siroj Bakoev, Aleksei Traspov, Lyubov Getmantseva, А. А. Белоус, Т. В. Карпушкина, Olga Kostyunina, А. В. Усатов, Tatiana V. Tatarinova
Software Mentions: 5
Published: almost 5 years ago

10.1111/pbi.13115

Genome‐wide selection footprints and deleterious variations in young Asian allotetraploid rapeseed
Cited by: 48
Author(s): Jun Zou, Limin Mao, Jie Qiu, Meng Wang, Jia Lu, Dongya Wu, Zhesi He, Meihong Chen, Yifei Shen, Enhui Shen, Yongji Huang, Ruiyuan Li, Dandan Hu, Lei Shi, Kai Wang, Qian Zhu, Chu-Yu Ye, Ian Bancroft, Graham J. King, Jinling Meng
Software Mentions: 5
Published: over 7 years ago

10.1186/s12889-018-5140-3

The role of venues in structuring HIV, sexually transmitted infections, and risk networks among men who have sex with men
Cited by: 6
Author(s): Lydia N Drumright, Sharon S. Weir, Simon D. W. Frost
Software Mentions: 5
Published: over 8 years ago

10.1038/s41598-019-57108-0

Transcriptional analysis identifies potential biomarkers and molecular regulators in pneumonia and COPD exacerbation
Cited by: 15
Author(s): Wilhelm Bertrams, Kathrin Griss, Maria Han, Kerstin Seidel, Andreas Klemmer, Alexandra Sittka-Stark, Stefan Hippenstiel, Norbert Suttorp, Florian Finkernagel, Jochen Wilhelm, Timm Greulich, Claus Vogelmeier, Julio Vera, Bernd Schmeck
Software Mentions: 5
Published: over 6 years ago

10.1186/s13059-020-02048-6

Systematic assessment of tissue dissociation and storage biases in single-cell and single-nucleus RNA-seq workflows
Cited by: 289
Author(s): Elena Denisenko, Belinda Guo, Matthew Jones, Rui Hou, Leanne de Kock, Timo Lassmann, Daniel Poppe, C Olivier, Rebecca K. Simmons, Ryan Lister, Alistair R.R. Forrest
Software Mentions: 5
Published: about 6 years ago

10.1111/eva.12659

Recent advances in conservation and population genomics data analysis
Cited by: 77
Author(s): Sarah A. Hendricks, Eric C. Anderson, Tiago Antão, Louis Bernatchez, Brenna R. Forester, Brittany A. Garner, Brian K. Hand, Paul A. Hohenlohe, Marty Kardos, Ben F. Koop, Arun Sethuraman, Robin S. Waples, Gordon Luikart
Software Mentions: 5
Published: almost 8 years ago

10.1186/s12862-019-1572-3

The transcriptional correlates of divergent electric organ discharges in Paramormyrops electric fish
Cited by: 4
Author(s): Mauricio Losilla, David Luecke, Jason R. Gallant
Software Mentions: 5
Published: over 6 years ago

10.1186/s42523-021-00104-5

Vertically transmitted microbiome protects eggs from fungal infection and egg failure
Cited by: 13
Author(s): Marie Bunker, Greg Elliott, H. Heyer-Gray, Michael R. Martin, A. Elizabeth Arnold, Stacey L. Weiss
Software Mentions: 5
Published: about 5 years ago

10.3897/zookeys.755.23939

A revision of the cleptoparasitic bee genus Epeolus Latreille for Nearctic species, north of Mexico (Hymenoptera, Apidae)
Cited by: 24
Author(s): Thomas M. Onuferko
Software Mentions: 5
Published: about 8 years ago

10.1186/s12863-018-0660-5

Skeletal muscle in aged mice reveals extensive transformation of muscle gene expression
Cited by: 45
Author(s): I‐Hsuan Lin, Junn-Liang Chang, Kate Hua, Wan-Chen Huang, Ming Hsu, Yifan Chen
Software Mentions: 5
Published: almost 8 years ago

10.3389/fmicb.2019.00256

Soil Macroinvertebrate Presence Alters Microbial Community Composition and Activity in the Rhizosphere
Cited by: 25
Author(s): Natalie Bray, Jenny Kao‐Kniffin, Serita D. Frey, Timothy J. Fahey, Kyle Wickings
Software Mentions: 5
Published: over 7 years ago

10.1534/g3.120.401622

Alternative Splicing During the <i>Chlamydomonas</i> <i>reinhardtii</i> Cell Cycle
Cited by: 10
Author(s): Manishi Pandey, Gary D. Stormo, Susan K. Dutcher
Software Mentions: 5
Published: almost 6 years ago

10.1111/jcmm.14556

A prognostic 10‐lncRNA expression signature for predicting the risk of tumour recurrence in breast cancer patients
Cited by: 16
Author(s): Jianing Tang, Jiangbo Ren, Qiuxia Cui, Dan Zhang, Deguang Kong, Xing Liao, Mengxin Lü, Yan Gong
Software Mentions: 5
Published: almost 7 years ago

10.1371/journal.pone.0241231

A taxonomic and molecular survey of the pteridophytes of the Nectandra Cloud Forest Reserve, Costa Rica
Cited by: 7
Author(s): Joel H. Nitta, Atsushi Ebihara, Alan Р. Smith
Software Mentions: 5
Published: over 5 years ago

10.1186/s12864-018-4704-z

OMGene: mutual improvement of gene models through optimisation of evolutionary conservation
Cited by: 6
Author(s): Michael Dunne, Steven Kelly
Software Mentions: 5
Published: about 8 years ago

10.1186/2197-425X-2-10

Reliability of the nitrogen washin-washout technique to assess end-expiratory lung volume at variable PEEP and tidal volumes
Cited by: 10
Author(s): Jean-Christophe Richard, Céline Pouzot, Alfredo Pinzón, J. S. Torres González, Maciej Orkisz, B. Neyran, Marcela Hernández Hoyos, F. Lávenne, Claude Guérin
Software Mentions: 5
Published: over 12 years ago

10.1002/cam4.3353

Construction of a lipid metabolism‐related and immune‐associated prognostic signature for hepatocellular carcinoma
Cited by: 37
Author(s): Bo Hu, Xiaobo Yang, Xinting Sang
Software Mentions: 5
Published: almost 6 years ago

10.1534/genetics.119.302138

Proteostasis Environment Shapes Higher-Order Epistasis Operating on Antibiotic Resistance
Cited by: 28
Author(s): Rafael F. Guerrero, Samuel V. Scarpino, João V. Rodrigues, Daniel L. Hartl, C. Brandon Ogbunugafor
Software Mentions: 5
Published: about 7 years ago

10.1002/bimj.201800222

Multiple imputation for discrete data: Evaluation of the joint latent normal model
Cited by: 17
Author(s): Matteo Quartagno, James Carpenter
Software Mentions: 5
Published: over 7 years ago

10.1186/s13148-021-01018-4

Novel DNA methylation signatures of tobacco smoking with trans-ethnic effects
Cited by: 44
Author(s): Colette Christiansen, Juan Castillo-Fernandez, Arce Domingo‐Relloso, Wei Zhao, Julia S. El-Sayed Moustafa, Pei-Chien Tsai, Jane Maddock, Karin Haack, Shelley A. Cole, Sharon L.R. Kardia, Mariam Molokhia, Matthew Suderman, Chris Power, Caroline L Relton, Andrew Wong, Diana Kuh, Alissa Goodman, Kerrin S. Small, Jennifer A. Smith, María Téllez-Plaza, Ana Navas-Acién, George B. Ploubidis, Rebecca Hardy, Jordana T. Bell
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pone.0254514

Reaching to inhibit a prepotent response: A wearable 3-axis accelerometer kinematic analysis
Cited by: 2
Author(s): Alessia Angeli, Irene Valori, Teresa Farroni, Gustavo Marfia
Software Mentions: 5
Published: about 5 years ago

10.1371/journal.pcbi.1002104

Decelerating Spread of West Nile Virus by Percolation in a Heterogeneous Urban Landscape
Cited by: 16
Author(s): Krisztián Mágori, Waheed I. Bajwa, Sarah E. Bowden, John M. Drake
Software Mentions: 5
Published: almost 15 years ago

10.1186/s12859-018-2019-3

Closha: bioinformatics workflow system for the analysis of massive sequencing data
Cited by: 15
Author(s): Gun Hwan Ko, Pan Gyu Kim, Jong-Cheol Yoon, Gukhee Han, Seong-Jin Park, Wangho Song, Byung-Wook Lee
Software Mentions: 5
Published: over 8 years ago

10.3389/fmicb.2021.629449

Diversity of Weissella confusa in Pozol and Its Carbohydrate Metabolism
Cited by: 5
Author(s): Diana Hernández-Oaxaca, Rafael López-Sánchez, Luis Lozano, Carmen Wacher, Lorenzo Segovia, Agustín López Munguía
Software Mentions: 5
Published: over 5 years ago

10.1186/s40168-021-01037-6

When your host shuts down: larval diapause impacts host-microbiome interactions in Nasonia vitripennis
Cited by: 15
Author(s): Jessica Dittmer, Robert M. Brucker
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pone.0257445

TRIM59: A potential diagnostic and prognostic biomarker in human tumors
Cited by: 2
Author(s): Zheng Jin, Liping Liu, Youran Yu, Dong Li, X. D. Zhu, Dongmei Yan, Zhifeng Zhu
Software Mentions: 5
Published: almost 5 years ago

10.3390/ijerph16040524

Age-Related Differences in miRNA Expression in Mexican-American Newborns and Children
Cited by: 6
Author(s): Karen Huen, Daneida Lizárraga, Katherine Kogut, Brenda Eskenazi, Nina Holland
Software Mentions: 5
Published: over 7 years ago

10.1002/pro.3783

The Dundee Resource for Sequence Analysis and Structure Prediction
Cited by: 11
Author(s): Stuart A. MacGowan, Fábio Madeira, Thiago Britto‐Borges, Mateusz Warowny, Alexey Drozdetskiy, James B. Procter, Geoffrey J. Barton
Software Mentions: 5
Published: over 6 years ago

10.3389/fonc.2020.607622

Identification and Verification of Immune-Related Gene Prognostic Signature Based on ssGSEA for Osteosarcoma
Cited by: 96
Author(s): Bo Xiao, Liyan Liu, Aoyu Li, Xiang Cheng, Pingxiao Wang, Hui Li, Tao Xiao
Software Mentions: 5
Published: over 5 years ago

10.1016/j.cell.2019.05.047

Neutrophils Driving Unconventional T Cells Mediate Resistance against Murine Sarcomas and Selected Human Tumors
Cited by: 147
Author(s): Andrea Ponzetta, Roberta Carriero, Silvia Carnevale, Marialuisa Barbagallo, Martina Molgora, Chiara Perucchini, Elena Magrini, Francesca Gianni, Paolo Kunderfranco, Nadia Polentarutti, Fabio Pasqualini, Sabrina Di Marco, Domenico Supino, Clelia Peano, Ferdinando Carlo Maria Cananzi, Piergiuseppe Colombo, Silvana Pilotti, Suliman Yousef Alomar, Eduardo Bonavita, Maria Rosaria Galdiero, Cecília Garlanda, Alberto Mantovani, Sébastien Jaillon
Software Mentions: 5
Published: about 7 years ago

10.3390/cancers11010041

Epilepsy Associates with Decreased HIF-1α/STAT5b Signaling in Glioblastoma
Cited by: 11
Author(s): Sharon Berendsen, Wim G.M. Spliet, Marjolein Geurts, Wim Van Hecke, Tatjana Seute, Tom J. Snijders, Vincent Bours, Erica H. Bell, Arnab Chakravarti, Pierre A. Robe
Software Mentions: 5
Published: over 7 years ago

10.1371/journal.pone.0128692

Social Media Fingerprints of Unemployment
Cited by: 111
Author(s): Alejandro Llorente, Manuel García-Herranz, Manuel Cebrián, Esteban Moro
Software Mentions: 5
Published: about 11 years ago

10.1371/journal.pone.0249831

Association between early viral LRTI and subsequent wheezing development, a meta-analysis and sensitivity analyses for studies comparable for confounding factors
Cited by: 4
Author(s): Sébastien Kenmoe, Arnol Bowo‐Ngandji, Cyprien Kengne‐Nde, Jean Thierry Ebogo‐Belobo, Donatien Serge Mbaga, Gadji Mahamat, Cynthia Paola Demeni Emoh, Richard Njouom
Software Mentions: 5
Published: over 5 years ago

10.3389/fmicb.2021.569020

Distribution of Hydrogen-Producing Bacteria in Tibetan Hot Springs, China
Cited by: 3
Author(s): Li Ma, Geng Wu, Jian Yang, Liuqin Huang, Dorji Phurbu, Wenjun Li, Hongchen Jiang
Software Mentions: 5
Published: almost 5 years ago

10.3390/genes12010048

Probably Correct: Rescuing Repeats with Short and Long Reads
Cited by: 3
Author(s): Monika Čechová
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pone.0246269

Skewed logit model for analyzing correlated infant morbidity data
Cited by: 6
Author(s): Ngugi Mwenda, Ruth Nduati, Mathew Kosgei, Gregory Kerich
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pone.0189509

Effects of urbanization on host-pathogen interactions, using Yersinia in house sparrows as a model
Cited by: 14
Author(s): Lieze Rouffaer, Diederik Strubbe, Aimeric Teyssier, Noraine Salleh Hudin, Anne‐Marie Van den Abeele, Ivo Cox, Roel Haesendonck, Michel Delmée, Freddy Haesebrouck, Frank Pasmans, Luc Lens, An Martel
Software Mentions: 5
Published: over 8 years ago

10.1371/journal.pone.0250385

What proportion of people have a follow-up biopsy in randomized trials of treatments for non-alcoholic steatohepatitis?: A systematic review and meta-analysis
Cited by: 1
Author(s): Dimitrios A. Koutoukidis, Elizabeth Morris, John A. Henry, Yusra Shammoon, Matthew C. Zimmerman, Moscho Michalopoulou, Susan A. Jebb, Paul Aveyard
Software Mentions: 5
Published: about 5 years ago

10.1186/s12864-017-4031-9

unitas: the universal tool for annotation of small RNAs
Cited by: 83
Author(s): Daniel Gebert, Charlotte Hewel, David Rosenkranz
Software Mentions: 5
Published: almost 9 years ago

10.1371/journal.pone.0119027

Comparative Transcriptome Analysis of Anthurium “Albama” and Its Anthocyanin-Loss Mutant
Cited by: 17
Author(s): Zhiying Li, Jiabin Wang, Xuequan Zhang, Li Xu
Software Mentions: 5
Published: over 11 years ago

10.1038/s41598-020-59511-4

Does sediment composition sort kinorhynch communities? An ecomorphological approach through geometric morphometrics
Cited by: 3
Author(s): Diego Cepeda, Dolores Trigo, Fernando Pardos, Nuria Sánchez
Software Mentions: 5
Published: over 6 years ago

10.1186/s12859-017-1673-1

NFPscanner: a webtool for knowledge-based deciphering of biomedical networks
Cited by: 0
Author(s): Wenjian Xu, Yang Cao, Ziwei Xie, Haochen He, Song He, Hong Hao, Xiaochen Bo, Fēi Li
Software Mentions: 5
Published: about 9 years ago

10.7717/peerj.4571

Pathways of topological rank analysis (PoTRA): a novel method to detect pathways involved in hepatocellular carcinoma
Cited by: 5
Author(s): Chaoxing Li, Li Liu, Valentin Dinu
Software Mentions: 5
Published: over 8 years ago

10.1186/s13148-021-01064-y

DNA methylation and gene expression integration in cardiovascular disease
Cited by: 21
Author(s): Guillermo Palou-Márquez, Isaac Subirana, Lara Nonell, Alba Fernández‐Sanlés, Roberto Elosúa
Software Mentions: 5
Published: over 5 years ago

10.1186/1756-0500-4-171

CloudAligner: A fast and full-featured MapReduce based tool for sequence mapping
Cited by: 101
Author(s): Tung Nguyen, Wei Shi, Douglas M. Ruden
Software Mentions: 5
Published: about 15 years ago

10.1002/ctm2.30

Development and external validation of a predictive scoring system associated with metastasis of T1‐2 colorectal tumors to lymph nodes
Cited by: 15
Author(s): Shaobo Mo, Zheng Zhou, Weixing Dai, Wenqiang Xiang, Lingyu Han, Long Zhang, Renjie Wang, Sanjun Cai, Qingguo Li, Guoxiang Cai
Software Mentions: 5
Published: over 6 years ago

10.1016/j.celrep.2020.107691

Expression of RUNX1-ETO Rapidly Alters the Chromatin Landscape and Growth of Early Human Myeloid Precursor Cells
Cited by: 17
Author(s): Monica Nafria, Peter Keane, Elizabeth Ng, Edouard G. Stanley, Andrew G. Elefanty, Constanze Bonifer
Software Mentions: 5
Published: about 6 years ago

10.3389/fmicb.2019.01665

Spatial Environmental Heterogeneity Determines Young Biofilm Assemblages on Microplastics in Baltic Sea Mesocosms
Cited by: 97
Author(s): Katharina Kesy, Sonja Oberbeckmann, Bernd Kreikemeyer, Matthias Labrenz
Software Mentions: 5
Published: almost 7 years ago

10.1038/s41598-019-46718-3

Pan-Renal Cell Carcinoma classification and survival prediction from histopathology images using deep learning
Cited by: 124
Author(s): Sairam Tabibu, P. K. Vinod, C. V. Jawahar
Software Mentions: 5
Published: about 7 years ago

10.3390/cancers13061447

Validation of Polymorphisms Associated with the Risk of Radiation-Induced Oesophagitis in an Independent Cohort of Non-Small-Cell Lung Cancer Patients
Cited by: 1
Author(s): Miguel E. Aguado‐Barrera, Laura Martínez-Calvo, Juan Fernández‐Tajes, Patricia Calvo-Crespo, Begoña Taboada‐Valladares, Ramón Lobato-Busto, Antonio Gómez-Caamaño, Ana Vega
Software Mentions: 5
Published: over 5 years ago

10.1016/j.csbj.2021.07.020

MyoData: An expression knowledgebase at single cell/nucleus level for the discovery of coding-noncoding RNA functional interactions in skeletal muscle
Cited by: 3
Author(s): Davide Corso, Francesco Chemello, Enrico Alessio, Ilenia Urso, Giulia Ferrarese, Martina Bazzega, Chiara Romualdi, Gerolamo Lanfranchi, Gabriele Sales, Stefano Cagnin
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pone.0109715

Genome-Wide Identification and Tissue-Specific Expression Analysis of UDP-Glycosyltransferases Genes Confirm Their Abundance in Cicer arietinum (Chickpea) Genome
Cited by: 33
Author(s): Ranu Sharma, Vimal Rawat, C.G. Suresh
Software Mentions: 5
Published: almost 12 years ago

10.18632/oncotarget.13252

Prognostic and predictive values of CDK1 and MAD2L1 in lung adenocarcinoma
Cited by: 81
Author(s): Yuan-Xiang Shi, Tao Zhu, Ting Zou, Wei Zhuo, Yixin Chen, Ma-Sha Huang, Wei Zheng, Chenjing Wang, Xi Li, Xiao‐Yuan Mao, Wei Zhang, Hong‐Hao Zhou, Ji‐Ye Yin, Zhao‐Qian Liu
Software Mentions: 5
Published: over 9 years ago

10.1002/ece3.5789

Comparative analysis of microbiota along the length of the gastrointestinal tract of two tree squirrel species ( <i>Sciurus aberti</i> and <i>S. niger</i> ) living in sympatry
Cited by: 5
Author(s): Andrew Joseph Reed, Jon C. Pigage, Helen K. Pigage, Cody Glickman, Jeremy M. Bono
Software Mentions: 5
Published: over 6 years ago

10.1371/journal.pone.0251458

Statistical privacy-preserving message broadcast for peer-to-peer networks
Cited by: 1
Author(s): David Mödinger, Jan-Hendrik Lorenz, Franz J. Hauck
Software Mentions: 5
Published: about 5 years ago

10.1371/journal.pone.0253587

HIV-1 Gag gene mutations, treatment response and drug resistance to protease inhibitors: A systematic review and meta-analysis protocol
Cited by: 1
Author(s): Alex Durand Nka, Georges Této, Maria Mercedes Santoro, Valantine Ngum Ndze, Désiré Takou, Béatrice Dambaya, Ezéchiel Ngoufack Jagni Semengue, Lavinia Fabeni, Carlo Federico Perno, Vittorio Colizzi, Francesca Ceccherini‐Silberstein, Joseph Fokam
Software Mentions: 5
Published: about 5 years ago

10.18632/oncotarget.20405

Cancer cell line specific co-factors modulate the FOXM1 cistrome
Cited by: 8
Author(s): Yue Wang, Matthew Ung, Tian Xia, Wenqing Cheng, Chao Cheng
Software Mentions: 5
Published: almost 9 years ago

10.3390/microorganisms8050695

Tocilizumab for Treatment of Severe COVID-19 Patients: Preliminary Results from SMAtteo COvid19 REgistry (SMACORE)
Cited by: 180
Author(s): Marta Colaneri, Laura Bogliolo, Pietro Valsecchi, Paolo Sacchi, Valentina Zuccaro, Fabio Brandolino, Carlomaurizio Montecucco, Francesco Mojoli, Emanuele Maria Giusti, Raffaele Bruno
Software Mentions: 5
Published: about 6 years ago

10.1186/s12859-016-0902-3

NEAT: a framework for building fully automated NGS pipelines and analyses
Cited by: 7
Author(s): Patrick Schorderet
Software Mentions: 5
Published: over 10 years ago

10.1371/journal.pone.0051292

Characterisation and Validation of Insertions and Deletions in 173 Patient Exomes
Cited by: 9
Author(s): Francesco Lescai, Silvia Bonfiglio, Chiara Bacchelli, Estelle Chanudet, Aoife Waters, Sanjay M. Sisodiya, Dalia Kasperavičiūtė, Julie Williams, Denise Harold, John Hardy, Robert Kleta, Sebahattin Çırak, Richard Williams, John C. Achermann, John Anderson, David P. Kelsell, Tom Vulliamy, Henry Houlden, Nicholas W. Wood, Una Marie Sheerin, Gian Paolo Tonini, Donna S. Mackay, Khalid Hussain, Jane C. Sowden, Veronica A. Kinsler, Justyna Osinska, Tony Brooks, Mike Hubank, Philip L. Beales, Elia Stupka
Software Mentions: 5
Published: over 13 years ago

10.3389/fpls.2020.570871

Genomic Selection for Prediction of Fruit-Related Traits in Pepper (Capsicum spp.)
Cited by: 15
Author(s): Ju-Pyo Hong, Na-Young Ro, Hea-Young Lee, Geon Woo Kim, Jae-Hoon Kwon, Eiji Yamamoto, Byoung-Cheorl Kang
Software Mentions: 5
Published: over 5 years ago