Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1093/bib/bbz018

https://doi.org/10.1093/bib/bbz018

CAFU: a Galaxy framework for exploring unmapped RNA-Seq data

Cited by: 11
Author(s): Siyuan Chen, Chengzhi Ren, Jingjing Zhai, Jinxin Yu, Xuyang Zhao, Zelong Li, Ting Zhang, Wenlong Ma, Zhaoxue Han, Chuang Ma
Published: over 5 years ago

Software Mentions 5

bioconductor: EBSeq
An R package for gene and isoform differential expression analysis of RNA-seq data
Papers that mentioned: 261
bioconductor: topGO
Enrichment Analysis for Gene Ontology
Papers that mentioned: 652
cran: CPAT
Change Point Analysis Tests
Papers that mentioned: 299
cran: SAM
Sparse Additive Modelling
Papers that mentioned: 4,566
pypi: CPAT
CPAT (Coding Potential Assessment Tool)
Papers that mentioned: 299