Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1074/mcp.RA118.000832

https://doi.org/10.1074/mcp.RA118.000832

Improvements to the Rice Genome Annotation Through Large-Scale Analysis of RNA-Seq and Proteomics Data Sets

Cited by: 17
Author(s): Zhe Ren, Da Qi, Nina Pugh, Kai Li, Bo Wen, Ruo Zhou, Shaohang Xu, Siqi Liu, Andrew R. Jones
Published: almost 6 years ago

Software Mentions 5

bioconductor: customProDB
Generate customized protein database from NGS data, with a focus on RNA-Seq data, for proteomics search
Papers that mentioned: 7
cran: CPAT
Change Point Analysis Tests
Papers that mentioned: 299
pypi: CPAT
CPAT (Coding Potential Assessment Tool)
Papers that mentioned: 299
pypi: custom
Custom self carry
Papers that mentioned: 1,363
pypi: TopHat
TopHat Platform
Papers that mentioned: 5,017