10.1371/journal.pone.0256268

Investigation of population-based mental health staffing and efficiency-based mental health productivity using an information-theoretic approach
Cited by: 5
Author(s): Matthew Tyler Boden, Clifford A. Smith, Jodie A. Trafton
Software Mentions: 5
Published: almost 5 years ago

10.1371/journal.pone.0103514

Identification of a Novel Luminal Molecular Subtype of Breast Cancer
Cited by: 14
Author(s): Anna Dvorkin‐Gheva, John A. Hassell
Software Mentions: 5
Published: almost 12 years ago

10.1172/JCI91363

The U2AF1S34F mutation induces lineage-specific splicing alterations in myelodysplastic syndromes
Cited by: 70
Author(s): Bon Ham Yip, Violetta Steeples, Emmanouela Repapi, Richard N. Armstrong, Miriam Llorian, S. Roy, Jacqueline Shaw, Hamid Dolatshad, Stephen Taylor, Amit Verma, Matthias Bartenstein, Paresh Vyas, Nicholas C. P. Cross, Luca Malcovati, Mario Cazzola, Eva Hellström‐Lindberg, Seishi Ogawa, Christopher W.J. Smith, Andrea Pellagatti, Jacqueline Boultwood
Software Mentions: 5
Published: about 9 years ago

10.1186/1471-2164-14-230

Whole-transcriptome, high-throughput RNA sequence analysis of the bovine macrophage response to Mycobacterium bovis infection in vitro
Cited by: 39
Author(s): Nicolas C. Nalpas, Stephen D. E. Park, David A. Magee, Maria Taraktsoglou, John A. Browne, Kevin M. Conlon, Kévin Rue-Albrecht, Kate E. Killick, Karsten Hokamp, Amanda J. Lohan, Brendan J. Loftus, Eamonn Gormley, Stephen V. Gordon, David E. MacHugh
Software Mentions: 5
Published: over 13 years ago

10.1371/journal.pone.0119303

Devil Declines and Catastrophic Cascades: Is Mesopredator Release of Feral Cats Inhibiting Recovery of the Eastern Quoll?
Cited by: 48
Author(s): Bronwyn A. Fancourt, Clare E. Hawkins, Elissa Z. Cameron, Menna Lloyd Jones, Stewart C. Nicol
Software Mentions: 5
Published: over 11 years ago

10.1186/s12859-020-03670-8

RiboMiner: a toolset for mining multi-dimensional features of the translatome with ribosome profiling data
Cited by: 9
Author(s): Fajin Li, Xudong Xing, Zhao Xiao, Xu Gang, Xuerui Yang
Software Mentions: 5
Published: almost 6 years ago

10.1371/journal.pntd.0006098

Environmental and socio-demographic individual, family and neighborhood factors associated with children intestinal parasitoses at Iguazú, in the subtropical northern border of Argentina
Cited by: 32
Author(s): María Romina Rivero, Carlos Daniel de Angelo, Paula Gabriela Núñez, Martin Miguel Salas, Carlos Motta, Alicia Chiaretta, Oscar Daniel Salomón, Song Liang
Software Mentions: 5
Published: over 8 years ago

10.1371/journal.pone.0232085

Analyzing the popularity of YouTube videos that violate mountain gorilla tourism regulations
Cited by: 28
Author(s): Ryoma Otsuka, Gen Yamakoshi
Software Mentions: 5
Published: about 6 years ago

10.1186/s12936-019-2659-4

A fast and cost-effective microsampling protocol incorporating reduced animal usage for time-series transcriptomics in rodent malaria parasites
Cited by: 7
Author(s): Abhinay Ramaprasad, Amit Kumar Subudhi, Richard Culleton, Arnab Pain
Software Mentions: 5
Published: over 7 years ago

10.1038/s41598-020-77777-6

Comparative analysis of transcriptomic profile, histology, and IDH mutation for classification of gliomas
Cited by: 6
Author(s): Paul Tran, Lynn Tran, John Nechtman, Bruno dos Santos, Sharad Purohit, Khaled Bin Satter, Boying Dun, Ravindra Kolhe, Suash Sharma, Roni J. Bollag, Jin Xiong She
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pone.0243857

Network preservation reveals shared and unique biological processes associated with chronic alcohol abuse in NAc and PFC
Cited by: 7
Author(s): Eric Vornholt, John W. Drake, Mohammed Mamdani, Gowon O. McMichael, Zachary N. Taylor, Silviu‐Alin Bacanu, Michael F. Miles, Vladimir I. Vladimirov
Software Mentions: 5
Published: over 5 years ago

10.1038/s41598-020-63275-2

Modulation of stress and immune response by Amblyomin-X results in tumor cell death in a horse melanoma model
Cited by: 9
Author(s): Flávio Lichtenstein, Asif Iqbal, Sonia Elisabete Alves de Lima Will, Rosemary Viola Bösch, Carlos DeOcesano-Pereira, Maurício Barbugiani Goldfeder, Roger Chammas, Carlos Eduardo Madureira Trufen, Kátia L.P. Morais, Jean Gabriel de Souza, Renato José Mendonça Natalino, Inácio L.M. Junqueira-de-Azevedo, Milton Yutaka Nishiyama-Jr, Úrsula Castro de Oliveira, F Alves, Jaqueline Mayara Araujo, Aline Ramos Maia Lobba, Ana Marisa Chudzinski‐Tavassi
Software Mentions: 5
Published: about 6 years ago

10.1371/journal.pone.0245958

Testing the causal mechanism of the peninsular effect in passerine birds from South Korea
Cited by: 2
Author(s): Jin–Yong Kim, Man‐Seok Shin, Chang Ho Seo, Soo Hyung Eo, Seungbum Hong
Software Mentions: 5
Published: over 5 years ago

10.1186/s12864-016-3075-6

Non-linear interactions between candidate genes of myocardial infarction revealed in mRNA expression profiles
Cited by: 17
Author(s): Katherine E. Hartmann, Michał Seweryn, Samuel K. Handelman, Grzegorz A. Rempała, Wolfgang Sadée
Software Mentions: 5
Published: almost 10 years ago

10.1002/cam4.4180

Identification of a novel 10 immune‐related genes signature as a prognostic biomarker panel for gastric cancer
Cited by: 9
Author(s): Tingna Chen, Chaogang Yang, Rongzhang Dou, Bin Xiong
Software Mentions: 5
Published: almost 5 years ago

10.1186/s13059-021-02386-z

BUTTERFLY: addressing the pooled amplification paradox with unique molecular identifiers in single-cell RNA-seq
Cited by: 4
Author(s): Johan Gustafsson, Jonathan L. Robinson, Jens Nielsen, Lior Pachter
Software Mentions: 5
Published: about 5 years ago

10.1371/journal.pone.0154712

Stimulation of the Salicylic Acid Pathway Aboveground Recruits Entomopathogenic Nematodes Belowground
Cited by: 21
Author(s): Camila C. Filgueiras, Denis S. Willett, Alcides Moino, Martín Pareja, Fahiem El Borai, D. W. Dickson, Lukasz L. Stelinski, Larry W. Duncan
Software Mentions: 5
Published: about 10 years ago

10.1186/s13059-018-1489-y

Genome organization and chromatin analysis identify transcriptional downregulation of insulin-like growth factor signaling as a hallmark of aging in developing B cells
Cited by: 25
Author(s): Hashem Koohy, Daniel J. Bolland, Louise S. Matheson, Stefan Schoenfelder, Claudia Stellato, Andrew Dimond, Csilla Várnai, Peter Chovanec, Tamara Chessa, Jérémy Denizot, Raquel Manzano García, Steven Wingett, Paula Freire-Pritchett, Takashi Nagano, Phillip T. Hawkins, Len R. Stephens, Sarah Elderkin, Mikhail Spivakov, Peter Fraser, Anne E. Corcoran, Patrick Varga‐Weisz
Software Mentions: 5
Published: almost 8 years ago

10.1007/s11104-017-3325-7

Impacts of peat bulk density, ash deposition and rainwater chemistry on establishment of peatland mosses
Cited by: 8
Author(s): Alice Noble, Sheila M. Palmer, David J. Glaves, Alistair Crowle, Joseph Holden
Software Mentions: 5
Published: about 9 years ago

10.1186/1471-2164-14-725

Positively correlated miRNA-mRNA regulatory networks in mouse frontal cortex during early stages of alcohol dependence
Cited by: 113
Author(s): Yury O. Nunez, Jay Truitt, Giorgio Gorini, Olga N. Ponomareva, Yuri A. Blednov, R. Adron Harris
Software Mentions: 5
Published: over 12 years ago

10.1038/s41598-021-98075-9

Distinguishing feature of gut microbiota in Tibetan highland coronary artery disease patients and its link with diet
Cited by: 14
Author(s): Yu-Lan Ma, Lulu Zhu, Zhuo Ma, Zhong-Shan Gao, Yumiao Wei, Youlu Shen, Lin Liu, Xingli Liu, Ming Ren
Software Mentions: 5
Published: almost 5 years ago

10.1038/s41598-020-80190-8

Speech adapts to differences in dentition within and across populations
Cited by: 8
Author(s): Caleb Everett, Sihan Chen
Software Mentions: 5
Published: over 5 years ago

10.1038/s41598-021-84270-1

Serial transplantation unmasks galectin-9 contribution to tumor immune escape in the MB49 murine model
Cited by: 4
Author(s): Valentin Baloche, Julie Rivière, Thi Bao Tram Tran, Aurore Gelin, Olivia Bawa, Nicolas Signolle, Mouhamadou Diop, Philippe Dessen, Stéphanie Beq, Muriel D. David, P. Busson
Software Mentions: 5
Published: over 5 years ago

10.3390/ijms22115858

Calreticulin Deficiency Disturbs Ribosome Biogenesis and Results in Retardation in Embryonic Kidney Development
Cited by: 4
Author(s): Nazli Serin, Gry H. Dihazi, Asima Tayyeb, Christof Lenz, Gerhard A. Müller, Michael Zeisberg, Hassan Dihazi
Software Mentions: 5
Published: about 5 years ago

10.1371/journal.pone.0254159

Non-territorial GPS-tagged golden eagles Aquila chrysaetos at two Scottish wind farms: Avoidance influenced by preferred habitat distribution, wind speed and blade motion status
Cited by: 6
Author(s): Alan H. Fielding, David J. Anderson, Stuart Benn, R.A. Dennis, Matthew Geary, Ewan Weston, D. Philip Whitfield
Software Mentions: 5
Published: almost 5 years ago

10.1371/journal.pcbi.0030026

Functional Impact of Missense Variants in BRCA1 Predicted by Supervised Learning
Cited by: 56
Author(s): Rachel Karchin, Alvaro N.A. Monteiro, Sean V. Tavtigian, Marcelo A. Carvalho, Andrej S̆ali
Software Mentions: 5
Published: over 19 years ago

10.3389/fpsyg.2017.01764

Effects of Noise on English Listening Comprehension among Chinese College Students with Different Learning Styles
Cited by: 4
Author(s): Xiu-yu Yang, Jie Meng, Yong Sheng Zhao
Software Mentions: 5
Published: over 8 years ago

10.1186/s12859-015-0475-6

Pheno2Geno - High-throughput generation of genetic markers and maps from molecular phenotypes for crosses between inbred strains
Cited by: 9
Author(s): Konrad Zych, Yang Li, Joeri K. van der Velde, Ronny V.L. Joosen, Wilco Ligterink, Ritsert C. Jansen, Danny Arends
Software Mentions: 5
Published: over 11 years ago

10.3390/microorganisms8111713

Genetic Variation and Preliminary Indications of Divergent Niche Adaptation in Cryptic Clade II of Escherichia
Cited by: 3
Author(s): Zhi Yong Shen, Xiu Pei Koh, Yan Yu, S. S. Lau
Software Mentions: 5
Published: over 5 years ago

10.1038/s41598-019-41948-x

The role of the environment in the evolution of nest shape in Australian passerines
Cited by: 13
Author(s): Iliana Medina
Software Mentions: 5
Published: over 7 years ago

10.1371/journal.pone.0169115

Field-Evolved Resistance in Corn Earworm to Cry Proteins Expressed by Transgenic Sweet Corn
Cited by: 133
Author(s): Galen P. Dively, P. Dilip Venugopal, Chad Finkenbinder
Software Mentions: 5
Published: over 9 years ago

10.3389/fpsyg.2018.01742

Visualizing Psychological Networks: A Tutorial in R
Cited by: 117
Author(s): Payton J. Jones, Patrick Mair, Richard J. McNally
Software Mentions: 5
Published: almost 8 years ago

10.3390/molecules26051357

The Influence of Smoking Status on Exhaled Breath Profiles in Asthma and COPD Patients
Cited by: 6
Author(s): Stefania Principe, Job J.M.H. van Bragt, Cristina Longo, Rob de Vries, Peter J. Sterk, Nicola Scichilone, Susanne Vijverberg, Anke‐Hilse Maitland‐van der Zee
Software Mentions: 5
Published: over 5 years ago

10.3389/fcimb.2016.00136

The Transcriptome of Exophiala dermatitidis during Ex-vivo Skin Model Infection
Cited by: 22
Author(s): Caroline Poyntner, Barbara Blasi, Elsa Arcalís, Ursula Mirastschijski, Katja Sterflinger, Hakim Tafer
Software Mentions: 5
Published: over 9 years ago

10.3389/fgene.2019.01126

Characterization of Full-Length Transcriptome Sequences and Splice Variants of Lateolabrax maculatus by Single-Molecule Long-Read Sequencing and Their Involvement in Salinity Regulation
Cited by: 29
Author(s): Yuan Tian, Haishen Wen, Xin Qi, Xiaoyan Zhang, Shikai Liu, Bingyu Li, Yalong Sun, Jifang Li, Feng He, Wenzhao Yang, Yun Li
Software Mentions: 5
Published: over 6 years ago

10.1002/ece3.1923

Female <i>Salix viminalis</i> are more severely infected by <i>Melampsora</i> spp. but neither sex experiences associational effects
Cited by: 33
Author(s): Kim Karlsson Moritz, Christer Björkman, Amy L. Parachnowitsch, Johan A. Stenberg
Software Mentions: 5
Published: over 10 years ago

10.1038/s41420-020-0263-6

Temporal transcriptome analysis of neuronal commitment reveals the preeminent role of the divergent lncRNA biotype and a critical candidate gene during differentiation
Cited by: 3
Author(s): Bharat Prajapati, Mahar Fatima, Mena Fatma, Priya Maddhesiya, Himali Arora, Teesta Naskar, Subhashree Devasenapathy, Pankaj Seth, Subrata Sinha
Software Mentions: 5
Published: about 6 years ago

10.1128/mBio.01500-19

Dissecting the Gene Expression, Localization, Membrane Topology, and Function of the Plasmodium falciparum STEVOR Protein Family
Cited by: 38
Author(s): Jan Stephan Wichers, Jochen Scholz, Jan Strauss, Susanne Witt, Andrés Lill, Laura-Isabell Ehnold, Niklas Neupert, Benjamin Liffner, Renke Lühken, Michaela Petter, Stephan Lorenzen, Danny W. Wilson, Christian Löw, Catherine Lavazec, Iris Bruchhaus, Egbert Tannich, Tim‐Wolf Gilberger, Anna Bachmann
Software Mentions: 5
Published: almost 7 years ago

10.1371/journal.pntd.0005701

The interplay of climate, intervention and imported cases as determinants of the 2014 dengue outbreak in Guangzhou
Cited by: 30
Author(s): Qu Cheng, Qinlong Jing, Robert C. Spear, John M. Marshall, Zhicong Yang, Peng Gong
Software Mentions: 5
Published: about 9 years ago

10.1038/s41438-021-00544-9

The domestication of Cucurbita argyrosperma as revealed by the genome of its wild relative
Cited by: 18
Author(s): Josué Barrera‐Redondo, Guillermo Sánchez‐de la Vega, Jonás A. Aguirre‐Liguori, Gabriela Castellanos‐Morales, Yocelyn T. Gutiérrez-Guerrero, Xitlali Aguirre-Dugua, Erika Aguirre‐Planter, Maud I. Tenaillon, Rafael Lira‐Saade, Luis E. Eguiarte
Software Mentions: 5
Published: about 5 years ago

10.1186/s12864-016-3228-7

RNA-seq based transcriptomic map reveals new insights into mouse salivary gland development and maturation
Cited by: 30
Author(s): Christian Gluck, Sang‐Won Min, Akinsola Oyelakin, Kirsten Smalley, Satrajit Sinha, Rose‐Anne Romano
Software Mentions: 5
Published: over 9 years ago

10.1186/s12864-019-5887-7

Refinement of breast cancer molecular classification by miRNA expression profiles
Cited by: 59
Author(s): Rolf Søkilde, Helena Persson, Anna Ehinger, Anna Chiara Pirona, Mårten Fernö, Cecilia Hegardt, Christer Larsson, Niklas Loman, Martin Malmberg, Lisa Rydén, Lao H. Saal, Åke Borg, Johan Vallon-Christerson, Carlos Rovira
Software Mentions: 5
Published: about 7 years ago

10.1186/s13059-014-0429-8

Transcriptome sequencing reveals altered long intergenic non-coding RNAs in lung cancer
Cited by: 177
Author(s): Nicole M. White, Christopher R. Cabanski, Jessica Silva-Fisher, Ha X. Dang, Ramaswamy Govindan, Christopher A. Maher
Software Mentions: 5
Published: almost 12 years ago

10.1038/s41598-021-95960-1

Modelling menstrual cycle length in athletes using state-space models
Cited by: 9
Author(s): Thiago de Paula Oliveira, Georgie Bruinvels, Charles R. Pedlar, Brian Moore, John Newell
Software Mentions: 5
Published: almost 5 years ago

10.12688/f1000research.8694.1

IncucyteDRC: An R package for the dose response analysis of live cell imaging data
Cited by: 8
Author(s): Phil Chapman, Dominic I. James, Amanda J. Watson, Gemma Hopkins, Ian D. Waddell, Donald Ogilvie
Software Mentions: 5
Published: about 10 years ago

10.1155/2021/5320941

COL1A1 Is a Potential Prognostic Biomarker and Correlated with Immune Infiltration in Mesothelioma
Cited by: 13
Author(s): Cangang Zhang, Shanshan Liu, Xin Wang, Haiyan Liu, Xiaobo Zhou, Haibo Li
Software Mentions: 5
Published: over 5 years ago

10.3389/fonc.2021.626187

Dysregulation of Transcription Factor Networks Unveils Different Pathways in Human Papillomavirus 16-Positive Squamous Cell Carcinoma and Adenocarcinoma of the Uterine Cervix
Cited by: 9
Author(s): Saloê Bispo, Ticiana Della Justina Farias, Patrícia Savio de Araujo-Souza, Ricardo Cintra, Hellen Geremias dos Santos, Natasha Andressa Nogueira Jorge, Mauro A. A. Castro, Gabriel Wajnberg, Nicole de Miranda Scherer, Maria Luiza Nogueira Dias Genta, Jesus Paula Carvalho, Luísa Lina Villa, Laura Sichero, Fábio Passetti
Software Mentions: 5
Published: about 5 years ago

10.3390/pharmaceutics13040488

A COVID-19 Drug Repurposing Strategy through Quantitative Homological Similarities Using a Topological Data Analysis-Based Framework
Cited by: 11
Author(s): Raúl Pérez-Moraga, Jaume Forés-Martos, Beatriz Suay-García, Jean‐Louis Duval, Antonio Falcó, Joan Climent
Software Mentions: 5
Published: over 5 years ago

10.3390/insects11110811

Search for Alternative Control Strategies of Drosophila suzukii (Diptera: Drosophilidae): Laboratory Assays Using Volatile Natural Plant Compounds
Cited by: 7
Author(s): Astrid Eben, Frank Sporer, Heidrun Vogt, Bernhard Wetterauer, Michael Wink
Software Mentions: 5
Published: over 5 years ago

10.1098/rspb.2020.2753

Priority effects alter interaction outcomes in a legume–rhizobium mutualism
Cited by: 10
Author(s): Julia A. Boyle, Anna K. Simonsen, Megan E. Frederickson, John R. Stinchcombe
Software Mentions: 5
Published: over 5 years ago

10.1186/s40168-018-0586-1

Association of bovine major histocompatibility complex (BoLA) gene polymorphism with colostrum and milk microbiota of dairy cows during the first week of lactation
Cited by: 34
Author(s): Hooman Derakhshani, J.C. Plaizier, Jeroen De Buck, Herman W. Barkema, Ehsan Khafipour
Software Mentions: 5
Published: over 7 years ago

10.1016/S2589-7500(21)00022-4

Performance of intensive care unit severity scoring systems across different ethnicities in the USA: a retrospective observational study
Cited by: 28
Author(s): Rik Sarkar, Christopher S. Martin, Heather Mattie, Judy Wawira Gichoya, David J. Stone, Leo Anthony Celi
Software Mentions: 5
Published: over 5 years ago

10.7554/eLife.56029

Recent shifts in the genomic ancestry of Mexican Americans may alter the genetic architecture of biomedical traits
Cited by: 14
Author(s): Melissa L. Spear, Alex Diaz-Papkovich, Elad Ziv, Joseph Yracheta, Simon Gravel, Dara G. Torgerson, Ryan D. Hernández
Software Mentions: 5
Published: over 5 years ago

10.1093/gigascience/giaa143

High-quality chromosome-level genome assembly and full-length transcriptome analysis of the pharaoh ant <i>Monomorium pharaonis</i>
Cited by: 7
Author(s): Qionghua Gao, Zijun Xiong, Rasmus Stenbak Larsen, Long Zhang, Jie Zhao, Guo Ding, Ruoping Zhao, Chengyuan Liu, Ran Hao, Guojie Zhang
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pcbi.0040006

Comprehensive Analysis of Affymetrix Exon Arrays Using BioConductor
Cited by: 45
Author(s): Michał Okoniewski, Crispin Miller
Software Mentions: 5
Published: over 18 years ago

10.1371/journal.pone.0245487

Genetic mechanisms associated with floral initiation and the repressive effect of fruit on flowering in apple (Malus x domestica Borkh)
Cited by: 5
Author(s): Chris Gottschalk, Songwen Zhang, Phil Schwallier, Sean M. Rogers, Martin J. Bukovac, Steve van Nocker
Software Mentions: 5
Published: over 5 years ago

10.1016/j.molp.2020.07.010

The IBI1 Receptor of β-Aminobutyric Acid Interacts with VOZ Transcription Factors to Regulate Abscisic Acid Signaling and Callose-Associated Defense
Cited by: 25
Author(s): Roland E. Schwarzenbacher, Grace Wardell, Joost H. M. Stassen, Emily Guest, Peijun Zhang, Estrella Luna, Jurriaan Ton
Software Mentions: 5
Published: almost 6 years ago

10.3390/ph14020087

Identification of 37 Heterogeneous Drug Candidates for Treatment of COVID-19 via a Rational Transcriptomics-Based Drug Repurposing Approach
Cited by: 4
Author(s): Andrea Gelemanović, Tinka Vidović, Višnja Stepanić, Katarina Trajković
Software Mentions: 5
Published: over 5 years ago

10.3390/molecules26061789

Needle Trap Device-GC-MS for Characterization of Lung Diseases Based on Breath VOC Profiles
Cited by: 14
Author(s): Fernanda Monedeiro, Maciej Monedeiro-Milanowski, Ileana-Andreea Raţiu, Beata Brożek, Tomasz Ligor, Bogusław Buszewski
Software Mentions: 5
Published: over 5 years ago

10.1038/s41598-019-57198-w

Monitoring canid scent marking in space and time using a biologging and machine learning approach
Cited by: 8
Author(s): Owen R. Bidder, Agustina di Virgilio, J. F. Hunter, Alex McInturff, Kaitlyn M. Gaynor, Alison M. Smith, Janelle Dorcy, Frank Rosell
Software Mentions: 5
Published: over 6 years ago

10.1002/ece3.4808

The independent and combined effects of floral traits distinguishing two pollination ecotypes of a moth‐pollinated orchid
Cited by: 8
Author(s): Judith Trunschke, Nina Sletvold, Jon Ågren
Software Mentions: 5
Published: over 7 years ago

10.3390/ijms221810006

Increased Autotaxin Levels in Severe COVID-19, Correlating with IL-6 Levels, Endothelial Dysfunction Biomarkers, and Impaired Functions of Dendritic Cells
Cited by: 14
Author(s): Ioanna Nikitopoulou, Dionysiοs Fanidis, Konstantinos Ntatsoulis, Panagiotis Moulos, George Mpekoulis, Maria Evangelidou, Alice G. Vassiliou, Vasiliki Dimakopoulou, Edison Jahaj, Stamatios Tsipilis, Stylianos E. Orfanos, Ioanna Dimopoulou, Emmanouil Angelakis, Karolina Akinosoglou, Niki Vassilaki, Argyrios Tzouvelekis, Αναστασία Κοτανίδου, Vassilis Aidinis
Software Mentions: 5
Published: almost 5 years ago

10.1002/ece3.1958

Scale dependence of sex ratio in wild plant populations: implications for social selection
Cited by: 5
Author(s): Brian J. Sanderson, Malcolm E. Augat, Douglas R. Taylor, Edmund D. Brodie
Software Mentions: 5
Published: over 10 years ago

10.3892/mmr.2014.3006

Analysis of the protein-protein interaction networks of differentially expressed genes in pulmonary embolism
Cited by: 5
Author(s): Hao Wang, Chen Wang, Lei Zhang, Yinghua Lu, Qianglin Duan, Zhu Gong, Aibin Liang, Haoming Song, Lemin Wang
Software Mentions: 5
Published: over 11 years ago

10.3389/fpls.2020.511768

R/UAStools::plotshpcreate: Create Multi-Polygon Shapefiles for Extraction of Research Plot Scale Agriculture Remote Sensing Data
Cited by: 14
Author(s): Steven L. Anderson, Seth C. Murray
Software Mentions: 5
Published: almost 6 years ago

10.1098/rspb.2019.1664

Kin but less than kind: within-group male relatedness does not increase female fitness in seed beetles
Cited by: 4
Author(s): Elena C. Berg, Martin I. Lind, Shannon Monahan, Sophie Bricout, Alexei A. Maklakov
Software Mentions: 5
Published: almost 7 years ago

10.1021/acs.est.1c02308

Sediment Remediation with New Composite Sorbent Amendments to Sequester Phosphorus, Organic Contaminants, and Metals
Cited by: 13
Author(s): Johan Wikström, Stefano Bonaglia, Robert Rämö, Gunno Renman, Jakob Walve, Johanna Hedberg, Jonas S. Gunnarsson
Software Mentions: 5
Published: almost 5 years ago

10.3390/pathogens10091196

Nanopore Assay Reveals Cell-Type-Dependent Gene Expression of Vesicular Stomatitis Indiana Virus and Differential Host Cell Response
Cited by: 2
Author(s): Balázs Kakuk, A. Kiss, Gábor Torma, Zsolt Csabai, István Prazsák, Máté Mizik, Klára Megyeri, Dóra Tombácz, Zsolt Boldogkői
Software Mentions: 5
Published: almost 5 years ago

10.1038/sdata.2015.51

De novo transcriptome profiling of highly purified human lymphocytes primary cells
Cited by: 34
Author(s): Raoul Jean Pierre Bonnal, Valeria Ranzani, Alberto Arrigoni, Serena Maria Curti, Ilaria Panzeri, Paola Gruarin, Sergio Abrignani, Grazisa Rossetti, Massimiliano Pagani
Software Mentions: 5
Published: almost 11 years ago

10.1038/srep37473

Hydrocarbon degraders establish at the costs of microbial richness, abundance and keystone taxa after crude oil contamination in permafrost environments
Cited by: 55
Author(s): Shuai Yang, Wen Xi, Yulan Shi, Susanne Liebner, Huijun Jin, Amedea Perfumo
Software Mentions: 5
Published: over 9 years ago

10.3389/fmicb.2015.00024

Resuscitation of the rare biosphere contributes to pulses of ecosystem activity
Cited by: 150
Author(s): Zachary T. Aanderud, Stuart Jones, Noah Fierer, Jay T. Lennon
Software Mentions: 5
Published: over 11 years ago

10.3389/fmicb.2016.00774

Stable Isotope Phenotyping via Cluster Analysis of NanoSIMS Data As a Method for Characterizing Distinct Microbial Ecophysiologies and Sulfur-Cycling in the Environment
Cited by: 19
Author(s): Katherine S. Dawson, Silvan Scheller, Jesse G. Dillon, Victoria J. Orphan
Software Mentions: 5
Published: about 10 years ago

10.1038/s41598-017-14451-4

Expression and regulation of long noncoding RNAs during the osteogenic differentiation of periodontal ligament stem cells in the inflammatory microenvironment
Cited by: 13
Author(s): Qingbin Zhang, Li Chen, Shiman Cui, Yan Li, Qi Zhao, Weimin Cao, Shixiang Lai, Sanjun Yin, Zhixiang Zuo
Software Mentions: 5
Published: over 8 years ago

10.3389/fgene.2020.579709

Potential of Immune-Related Genes as Biomarkers for Diagnosis and Subtype Classification of Preeclampsia
Cited by: 8
Author(s): Ying Wang, Zhen Li, Guanhua Song, Jun Wang
Software Mentions: 5
Published: over 5 years ago

10.3389/fmicb.2019.02944

Evidence for Co-evolutionary History of Early Diverging Lycopodiaceae Plants With Fungi
Cited by: 12
Author(s): Gian Maria Niccolò Benucci, Delaney Burnard, Lara D. Shepherd, Gregory Bonito, Andrew B. Munkacsi
Software Mentions: 5
Published: over 6 years ago

10.1001/jamanetworkopen.2021.6857

Association of In-Ear Device Use With Communication Quality Among Individuals Wearing Personal Protective Equipment in a Simulated Operating Room
Cited by: 5
Author(s): Don Nguyen, Emily Kay‐Rivest, Marc A. Tewfik, Michael P. Hier, Alexandre Lehmann
Software Mentions: 5
Published: about 5 years ago

10.1002/1878-0261.12902

A novel prognostic mRNA/miRNA signature for esophageal cancer and its immune landscape in cancer progression
Cited by: 35
Author(s): Yue Zhao, Li Xu, Xinyu Wang, Shuai Niu, Hezhong Chen, Chunguang Li
Software Mentions: 5
Published: over 5 years ago

10.1038/s41598-018-19984-w

Comparative transcriptome analysis reveals molecular response to salinity stress of salt-tolerant and sensitive genotypes of indica rice at seedling stage
Cited by: 51
Author(s): Jun Wang, Zhu Jun, Yadong Zhang, Fangjun Fan, Wenqi Li, Fangquan Wang, Zhong WeiGong, Cailin Wang, Jie Yang
Software Mentions: 5
Published: over 8 years ago

10.1002/ece3.7598

Honest signals and sexual conflict: Female lizards carry undesirable indicators of quality
Cited by: 10
Author(s): Braulio A. Assis, Julian D. Avery, Catherine Tylan, Heather I. Engler, Ryan L. Earley, Tracy Langkilde
Software Mentions: 5
Published: about 5 years ago

10.1186/s12874-020-01173-x

An assessment of the potential miscalibration of cardiovascular disease risk predictions caused by a secular trend in cardiovascular disease in England
Cited by: 2
Author(s): Alexander Pate, Tjeerd van Staa, Richard Emsley
Software Mentions: 5
Published: over 5 years ago

10.3390/genes12020292

Comparative Mitogenomics in Hyalella (Amphipoda: Crustacea)
Cited by: 5
Author(s): Francesco Zapelloni, José A. Jurado‐Rivera, Damià Jaume, Carlos Juan, Joan Pons
Software Mentions: 5
Published: over 5 years ago

10.1093/gbe/evaa062

The Origin and Composition of Korean Ethnicity Analyzed by Ancient and Present-Day Genome Sequences
Cited by: 16
Author(s): Jung-Eun Kim, Sungwon Jeon, Jae-Pil Choi, Asta Blažytė, Yeonsu Jeon, Jong‐Il Kim, Jun Ohashi, Katsushi Tokunaga, Sumio Sugano, Suthat Fucharoen, Fahd Al-Mulla, Jong Bhak
Software Mentions: 5
Published: over 6 years ago

10.1038/s41438-021-00465-7

Genetic characterization of an almond germplasm collection and volatilome profiling of raw and roasted kernels
Cited by: 10
Author(s): Mario Di Guardo, Brian Farneti, Iuliia Khomenko, Giulia Modica, A. Mosca, Gaetano Distefano, Luca Bianco, Michela Troggio, Francesco Sottile, Stefano La Malfa, Franco Biasioli, Alessandra Gentile
Software Mentions: 5
Published: over 5 years ago

10.1111/eva.12803

Evidence for adaptive responses to historic drought across a native plant species range
Cited by: 38
Author(s): Erin E. Dickman, Lillie K. Pennington, Steven J. Franks, Jason P. Sexton
Software Mentions: 5
Published: about 7 years ago

10.7554/eLife.21778

Non-coding cancer driver candidates identified with a sample- and position-specific model of the somatic mutation rate
Cited by: 36
Author(s): Malene Juul, Johanna Bertl, Qianyun Guo, Morten Muhlig Nielsen, Michał P. Świtnicki, Henrik Hornshøj, Tobias Madsen, Asger Hobolth, Jakob Skou Pedersen
Software Mentions: 5
Published: over 9 years ago

10.1186/s12985-017-0882-6

ZIKV infection effects changes in gene splicing, isoform composition and lncRNA expression in human neural progenitor cells
Cited by: 49
Author(s): Benxia Hu, Yongxia Huo, Liping Yang, Guijun Chen, Min‐Hua Luo, Jing Yang, Jumin Zhou
Software Mentions: 5
Published: over 8 years ago

10.2196/22179

Online Patient Recruitment in Clinical Trials: Systematic Review and Meta-Analysis
Cited by: 53
Author(s): Mette Brøgger-Mikkelsen, Zarqa Ali, John R. Zibert, Anette Andersen, Simon Francis Thomsen
Software Mentions: 5
Published: over 5 years ago

10.1186/1471-2164-11-571

Comparing de novo assemblers for 454 transcriptome data
Cited by: 240
Author(s): Sujai Kumar, Mark Blaxter
Software Mentions: 5
Published: over 15 years ago

10.1074/mcp.RA118.000832

Improvements to the Rice Genome Annotation Through Large-Scale Analysis of RNA-Seq and Proteomics Data Sets
Cited by: 17
Author(s): Zhe Ren, Da Qi, Nina Pugh, Kai Li, Bo Wen, Ruo Zhou, Shaohang Xu, Siqi Liu, Andrew R. Jones
Software Mentions: 5
Published: over 7 years ago

10.3389/fnins.2019.00002

A Microglial Signature Directing Human Aging and Neurodegeneration-Related Gene Networks
Cited by: 51
Author(s): Shradha Mukherjee, Christine Klaus, Mihaela Pricop-Jeckstadt, Jeremy A. Miller, Felix L Struebing
Software Mentions: 5
Published: over 7 years ago

10.3390/v12101158

Identifying Spanish Areas at More Risk of Monthly BTV Transmission with a Basic Reproduction Number Approach
Cited by: 1
Author(s): Cecilia Aguilar-Vega, Jaime Bosch, Eduardo Fernández-Carrión, Javier Lucientes, José Manuel Sánchez‐Vizcaíno
Software Mentions: 5
Published: over 5 years ago

10.1038/s41598-020-58576-5

Structural and functional differentiation of bacterial communities in post-coal mining reclamation soils of South Africa: bioindicators of soil ecosystem restoration
Cited by: 49
Author(s): Obinna T. Ezeokoli, Cornelius Carlos Bezuidenhout, Mark Maboeta, Damase P. Khasa, Rasheed Adeleke
Software Mentions: 5
Published: over 6 years ago

10.3389/fpsyg.2018.01343

On the Dependability and Feasibility of Layperson Ratings of Divergent Thinking
Cited by: 26
Author(s): Richard W. Hass, Marisa Rivera, Paul J. Silvia
Software Mentions: 5
Published: almost 8 years ago

10.1371/journal.pone.0248485

16S rRNA gene amplicon-based metagenomic analysis of bacterial communities in the rhizospheres of selected mangrove species from Mida Creek and Gazi Bay, Kenya
Cited by: 21
Author(s): Edith M. Muwawa, Chinedu Christopher Obieze, Huxley Mae Makonde, Joyce Jefwa, James H. P. Kahindi, Damase Khasa
Software Mentions: 5
Published: over 5 years ago

10.1186/s13071-017-2501-1

Analysis of near infrared spectra for age-grading of wild populations of Anopheles gambiae
Cited by: 32
Author(s): Benjamin J Krajacich, Jacob I. Meyers, Haoués Alout, Roch K. Dabiré, Floyd E. Dowell, Brian D. Foy
Software Mentions: 5
Published: over 8 years ago

10.1038/s41598-021-84407-2

Premating barriers in young sympatric snail species
Cited by: 6
Author(s): Arina L. Maltseva, Marina A. Varfolomeeva, Arseniy Lobov, Polina Tikanova, Egor A. Repkin, Irina Y. Babkina, Marina Panova, Natalia A. Mikhailova, Andrei I. Granovitch
Software Mentions: 5
Published: over 5 years ago

10.3389/fmed.2017.00153

TruSeq-Based Gene Expression Analysis of Formalin-Fixed Paraffin-Embedded (FFPE) Cutaneous T-Cell Lymphoma Samples: Subgroup Analysis Results and Elucidation of Biases from FFPE Sample Processing on the TruSeq Platform
Cited by: 15
Author(s): Philippe Lefrançois, Michael T. Tetzlaff, Linda Moreau, Andrew Watters, Elena Netchiporouk, Nathalie Provost, Martin Gilbert, Xiao Ni, Denis Sasseville, Madeleine Duvic, Ivan V. Litvinov
Software Mentions: 5
Published: almost 9 years ago

10.1186/s12935-019-0731-3

Potential new biomarkers for endometrial cancer
Cited by: 37
Author(s): Michelle H. Townsend, Zac E. Ence, Abigail M. Felsted, Alyssa Parker, Stephen R. Piccolo, Richard A. Robison, Kim L. O’Neill
Software Mentions: 5
Published: over 7 years ago

10.1016/j.celrep.2018.03.046

Machine Learning Detects Pan-cancer Ras Pathway Activation in The Cancer Genome Atlas
Cited by: 111
Author(s): Gregory P. Way, Francisco Sanchez‐Vega, Konnor La, Joshua Armenia, Walid K. Chatila, Augustin Luna, Chris Sander, Andrew D. Cherniack, Deqin Ma, Giovanni Ciriello, Nikolaus Schultz, Yolanda Sánchez, Casey S. Greene
Software Mentions: 5
Published: over 8 years ago

10.1093/bib/bbz018

CAFU: a Galaxy framework for exploring unmapped RNA-Seq data
Cited by: 11
Author(s): Siyuan Chen, Chengzhi Ren, Jingjing Zhai, Jinxin Yu, Xuyang Zhao, Zelong Li, Ting Zhang, Wenlong Ma, Zhaoxue Han, Chuang Ma
Software Mentions: 5
Published: over 7 years ago