10.1371/journal.pone.0246809

Resource selection of a nomadic ungulate in a dynamic landscape
Cited by: 4
Author(s): Theresa S. M. Stratmann, Nandintsetseg Dejid, Justin M. Calabrese, William F. Fagan, Christen H. Fleming, Kirk A. Olson, Thomas Mueller
Software Mentions: 5
Published: over 5 years ago

10.3390/ani10122451

The Native Ant Lasius niger Can Limit the Access to Resources of the Invasive Argentine Ant
Cited by: 6
Author(s): Marion Cordonnier, Olivier Blight, Elena Angulo, Franck Courchamp
Software Mentions: 5
Published: over 5 years ago

10.1111/eva.13219

Whole genome genotyping reveals discrete genetic diversity in north‐east Atlantic maerl beds
Cited by: 3
Author(s): Tom L. Jenkins, Marie‐Laure Guillemin, Cornelia Simon-Nutbrown, Heidi L. Burdett, Jamie R. Stevens, Viviana Peña
Software Mentions: 5
Published: over 5 years ago

10.1111/eva.12699

Weed evolution: Genetic differentiation among wild, weedy, and crop radish
Cited by: 16
Author(s): Amanda Charbonneau, David C. Tack, Allison Lale, J. E. Goldston, Mackenzie Caple, Emma Conner, Oz Barazani, Jotham Ziffer-Berger, Ian Dworkin, Jeffrey K. Conner
Software Mentions: 5
Published: almost 8 years ago

10.1093/molbev/msw124

Mapping Phylogenetic Trees to Reveal Distinct Patterns of Evolution
Cited by: 107
Author(s): Michaela Kendall, Caroline Colijn
Software Mentions: 5
Published: about 10 years ago

10.1186/s40168-020-00995-7

Characterization of the human skin resistome and identification of two microbiota cutotypes
Cited by: 30
Author(s): Zhiming Li, Jingjing Xia, Liuyiqi Jiang, Yimei Tan, Yitai An, Xiaodong Zhu, Jie Ruan, Zhihua Chen, Hefu Zhen, Yanyun Ma, Zhuye Jie, Liang Xiao, Huanming Yang, Jian Wang, Karsten Kristiansen, Xun Xu, Li Jin, Chao Nie, Jean Krutmann, Xiao Liu, Jiucun Wang
Software Mentions: 5
Published: over 5 years ago

10.1038/s41598-021-91057-x

Ancient DNA, lipid biomarkers and palaeoecological evidence reveals construction and life on early medieval lake settlements
Cited by: 10
Author(s): Antony G. Brown, Maarten van Hardenbroek, Thierry Fonville, Kimberley Davies, Helen M. M. Mackay, Emily Murray, Katie Head, Phil Barratt, Finbar McCormick, Gentile Francesco Ficetola, Ludovic Gielly, A. Henderson, Anne Crone, Graham Cavers, Peter G. Langdon, Nicki J. Whitehouse, Duncan Pirrie, Inger Greve Alsos
Software Mentions: 5
Published: about 5 years ago

10.1186/s40462-021-00249-7

Migration ecology of western gray catbirds
Cited by: 7
Author(s): Kristen A. Mancuso, Megan A. Fylling, Christine A. Bishop, Karen E. Hodges, Michael B. Lancaster, Katharine Stone
Software Mentions: 5
Published: over 5 years ago

10.1111/eva.12647

Population genomics of the introduced and cultivated Pacific kelp<i>Undaria pinnatifida</i>: Marinas-not farms-drive regional connectivity and establishment in natural rocky reefs
Cited by: 43
Author(s): Jaromir Guzinski, Marion Ballenghien, Claire Daguin‐Thiébaut, Laurent Lévêque, Frédérique Viard
Software Mentions: 5
Published: about 8 years ago

10.3390/ijerph18031333

Handling Complex Missing Data Using Random Forest Approach for an Air Quality Monitoring Dataset: A Case Study of Kuwait Environmental Data (2012 to 2018)
Cited by: 28
Author(s): Ahmad Alsaber, Jiazhu Pan, Adeeba Al‐Hurban
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pntd.0004549

Transforming Clinical Data into Actionable Prognosis Models: Machine-Learning Framework and Field-Deployable App to Predict Outcome of Ebola Patients
Cited by: 52
Author(s): Andrés Colubri, Thomas Silver, Terrence Fradet, Kalliroi Retzepi, Benjamin N. Fry, Pardis C. Sabeti
Software Mentions: 5
Published: over 10 years ago

10.7717/peerj.9893

Spatial ecology of little egret (<i>Egretta garzetta</i>) in Hong Kong uncovers preference for commercial fishponds
Cited by: 5
Author(s): Chun-Chiu Pang, Yik-Hei Sung, Yun-tak Chung, Hak-king Ying, Helen Hoi Ning Fong, Yat-tung Yu
Software Mentions: 5
Published: almost 6 years ago

10.1371/journal.pone.0230221

Driving factors of conifer regeneration dynamics in eastern Canadian boreal old-growth forests
Cited by: 22
Author(s): Maxence Martin, Miguel Montoro Girona, Hubert Morin
Software Mentions: 5
Published: almost 6 years ago

10.3389/fcimb.2021.633242

Effects of Smoking on Inflammatory Markers in a Healthy Population as Analyzed via the Gut Microbiota
Cited by: 13
Author(s): Yan Su, Zhonghui Ma, Mengfan Jiao, Youxiang Wang, Ang Li, Shuzhe Ding
Software Mentions: 5
Published: almost 5 years ago

10.3390/diagnostics11030476

Association of Circulating miRNA Expression with Preeclampsia, Its Onset, and Severity
Cited by: 8
Author(s): Zuzana Kolková, Veronika Holubeková, Marián Grendár, Marcela Ňachajová, Pavol Žúbor, Terézia Pribulová, Dušan Loderer, Imrich Zigo, Kamil Biringer, Andrea Horňáková
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pone.0072238

Effect of Doxorubicin/Pluronic SP1049C on Tumorigenicity, Aggressiveness, DNA Methylation and Stem Cell Markers in Murine Leukemia
Cited by: 73
Author(s): Daria Y. Alakhova, Yi Zhao, Shu Li, Alexander V. Kabanov
Software Mentions: 5
Published: almost 13 years ago

10.1371/journal.pgen.1009260

TDP-43 mutations link Amyotrophic Lateral Sclerosis with R-loop homeostasis and R loop-mediated DNA damage
Cited by: 43
Author(s): Marta Gianini, Aleix Bayona-Feliú, Daisy Sproviero, Sónia Barroso, Cristina Cereda, Andrés Aguilera
Software Mentions: 5
Published: over 5 years ago

10.7717/peerj.10941

Extensive microbial diversity within the chicken gut microbiome revealed by metagenomics and culture
Cited by: 59
Author(s): Rachel Gilroy, Anuradha Ray, María Getino, Isabella Pursley, Daniel L. Horton, Nabil-Fareed Alikhan, Dave Baker, Karim Gharbi, Neil Hall, Mick Watson, Evelien M. Adriaenssens, Ebenezer Foster-Nyarko, Sheikh Jarju, Arss Secka, Martín Antonio, Aharon Oren, Roy R. Chaudhuri, Roberto La Ragione, Falk Hildebrand, Mark J. Pallen
Software Mentions: 5
Published: over 5 years ago

10.1007/s13577-021-00492-5

Establishment and characterization of 38 novel patient-derived primary cancer cell lines using multi-region sampling revealing intra-tumor heterogeneity of gallbladder carcinoma
Cited by: 5
Author(s): Feiling Feng, Qiang Cheng, Bin Li, Chen Liu, Huizhen Wang, Xiang Xu, Yang Yu, Zishuo Chen, Xiaobing Wu, Dong Hua, Kai-Jian Chu, Zhenghua Xie, Qingxiang Gao, Lei Xiong, Fugen Li, Bin Yi, Dadong Zhang, Xiaoqing Jiang
Software Mentions: 5
Published: over 5 years ago

10.1186/s13567-021-00972-4

Transcriptomic analysis of equine chorioallantois reveals immune networks and molecular mechanisms involved in nocardioform placentitis
Cited by: 8
Author(s): Hesham A. Ali, Shavahn C. Loux, Laura Kennedy, Kirsten E. Scoggin, Pouya Dini, Carleigh E. Fedorka, Theodore S. Kalbfleisch, A. Esteller-Vico, David W. Horohov, Erdal Erol, Craig N. Carter, Jon J. Smith, Barry A. Ball
Software Mentions: 5
Published: about 5 years ago

10.1186/s40168-017-0261-y

Fecal metagenomic profiles in subgroups of patients with myalgic encephalomyelitis/chronic fatigue syndrome
Cited by: 127
Author(s): Dorottya Nagy‐Szakal, Brent L. Williams, Nischay Mishra, Xiaoyu Che, Bohyun Lee, Lucinda Bateman, Nancy G. Klimas, Anthony L. Komaroff, Susan Levine, José G. Montoya, Daniel L. Peterson, Devi Ramanan, Komal Jain, M L Eddy, Mady Hornig, W. Ian Lipkin
Software Mentions: 5
Published: about 9 years ago

10.1186/1471-2164-15-687

Species and gene divergence in Littorina snails detected by array comparative genomic hybridization
Cited by: 20
Author(s): Marina Panova, Tomas Johansson, Björn Canbäck, Johan Bentzer, Magnus Alm Rosenblad, Kerstin Johannesson, Anders Tunlid, Carl André
Software Mentions: 5
Published: over 12 years ago

10.1186/s12915-017-0359-5

Low-cell-number, single-tube amplification (STA) of total RNA revealed transcriptome changes from pluripotency to endothelium
Cited by: 5
Author(s): Yi‐Hsuan Lee, Ya Wen Hsueh, Yunyan Peng, Kung Chao Chang, Kuen‐Jer Tsai, Han Sun, Ih Jen Su, Po Min Chiang
Software Mentions: 5
Published: over 9 years ago

10.1186/s12859-021-04121-8

Euler diagrams drawn with ellipses area-proportionally (Edeap)
Cited by: 6
Author(s): Michael Wybrow, Peter Rodgers, Fadi K. Dib
Software Mentions: 5
Published: about 5 years ago

10.1186/s12859-019-3008-x

An equivalence approach to the integrative analysis of feature lists
Cited by: 1
Author(s): Álex Sánchez-Pla, Miquel Salicrú, Jordi Ocaña
Software Mentions: 5
Published: almost 7 years ago

10.1002/aps3.11295

An empirical assessment of a single family‐wide hybrid capture locus set at multiple evolutionary timescales in Asteraceae
Cited by: 24
Author(s): K. Jones, Tomáš Fér, Roswitha Schmickl, Rebecca B. Dikow, Vicki A. Funk, Sonia Herrando‐Moraira, Paul R. Johnston, Norbert Kilian, Carolina M. Siniscalchi, Alfonso Susanna, Marek Slovák, Ramhari Thapa, Linda E. Watson, Jennifer R. Mandel
Software Mentions: 5
Published: almost 7 years ago

10.1371/journal.pone.0239486

BioPETsurv: Methodology and open source software to evaluate biomarkers for prognostic enrichment of time-to-event clinical trials
Cited by: 3
Author(s): Siyuan Cheng, Kathleen F. Kerr, Heather Thiessen-Philbrook, Steven G. Coca, Chirag R. Parikh
Software Mentions: 5
Published: almost 6 years ago

10.1038/s41598-021-91058-w

Vulnerability to climate change of a microendemic lizard species from the central Andes
Cited by: 4
Author(s): Alejandro Laspiur, Juan Carlos Santos, Susana Marlin Medina, Jesús E Pizarro, Eduardo Alfredo Sanabria, Barry Sinervo, Nora R. Ibargüengoytía
Software Mentions: 5
Published: about 5 years ago

10.3389/fpls.2019.00849

Potential Elevation Shift of the European Beech Stands (Fagus sylvatica L.) in Serbia
Cited by: 11
Author(s): Lazar Pavlović, Dejan Stojanović, Emina Mladenović, Milena Lakićević, Saša Orlović
Software Mentions: 5
Published: about 7 years ago

10.1371/journal.pcbi.1004732

PSAMM: A Portable System for the Analysis of Metabolic Models
Cited by: 35
Author(s): Jon Lund Steffensen, Keith Dufault‐Thompson, Ying Zhang
Software Mentions: 5
Published: over 10 years ago

10.3390/plants10091870

The Arabinogalactan Protein Family of Centaurium erythraea Rafn
Cited by: 3
Author(s): Danijela M. Paunović, Katarina Ćuković, Milica Bogdanović, Slaðana Todorović, Milana Trifunović‐Momčilov, Angelina Subotić, Ana Simonović, Milan Dragićević
Software Mentions: 5
Published: almost 5 years ago

10.1093/molbev/msy198

Phylotranscriptomic Insights into the Diversification of Endothermic<i>Thunnus</i>Tunas
Cited by: 13
Author(s): Adam Ciezarek, Owen G. Osborne, Oliver N. Shipley, Edward J. Brooks, S Tracey, Jaime D. McAllister, Luke D. Gardner, Michael J.E. Sternberg, Barbara A. Block, Vincent Savolainen
Software Mentions: 5
Published: over 7 years ago

10.1038/s42003-021-01659-4

Amynthas corticis genome reveals molecular mechanisms behind global distribution
Cited by: 4
Author(s): Xing Wang, Yi Zhang, Yufeng Zhang, Mingming Kang, Yuanbo Li, Samuel W. James, Yang Yang, Yang Bi, Hao Jiang, Yi Zhao, Zhenjun Sun
Software Mentions: 5
Published: over 5 years ago

10.1038/s41598-021-84925-z

Ants modulate stridulatory signals depending on the behavioural context
Cited by: 6
Author(s): Alberto Masoni, Filippo Frizzi, Rachele Nieri, Luca Pietro Casacci, Valerio Mazzoni, Stefano Turillazzi, Giacomo Santini
Software Mentions: 5
Published: over 5 years ago

10.1038/s41598-020-72460-2

Dental black plaque: metagenomic characterization and comparative analysis with white-plaque
Cited by: 4
Author(s): Verónica Veses, Pedro González-Torres, Belén Carbonetto, MÂa del Mar Jovani-Sancho, Raquel González-Martínez, Isidoro Cortell-Ballester, Chirag C. Sheth
Software Mentions: 5
Published: almost 6 years ago

10.1038/s41598-020-61868-5

Climatic and edaphic controls over tropical forest diversity and vegetation carbon storage
Cited by: 49
Author(s): Florian Hofhansl, Eduardo Chacón‐Madrigal, Lucia Fuchslueger, Daniel Jenking, Albert Morera-Beita, Christoph Plutzar, Fernando Silla, Kelly M. Andersen, David M. Buchs, Stefan Dullinger, Konrad Fiedler, Oskar Franklin, Peter Hietz, Werner Huber, Carlos Alberto Quesada, Anja Rammig, Franziska Schrodt, Andrea G. Vincent, Anton Weissenhofer, Wolfgang Wanek
Software Mentions: 5
Published: over 6 years ago

10.3390/ani10101932

“HerdGPS-Preprocessor”—A Tool to Preprocess Herd Animal GPS Data; Applied to Evaluate Contact Structures in Loose-Housing Horses
Cited by: 4
Author(s): Jennifer Salau, Frederik Hildebrandt, Irena Czycholl, Joachim Krieter
Software Mentions: 5
Published: over 5 years ago

10.1038/s41598-017-11244-7

Methanogens predominate in natural corrosion protective layers on metal sheet piles
Cited by: 34
Author(s): Nardy Kip, Stefan Jansen, Márcio Fernandes Alves Leite, Mattias de Hollander, M. Afanasyev, Eiko E. Kuramae, Johannes A. van Veen
Software Mentions: 5
Published: almost 9 years ago

10.3389/fpls.2019.00643

Shifts in Ectomycorrhizal Fungal Communities and Exploration Types Relate to the Environment and Fine-Root Traits Across Interior Douglas-Fir Forests of Western Canada
Cited by: 43
Author(s): Camille E. Defrenne, Timothy J. Philpott, Shannon H. A. Guichon, W. Jean Roach, Brian J. Pickles, Suzanne W. Simard
Software Mentions: 5
Published: about 7 years ago

10.1371/journal.pone.0201031

Salmonella spp. transmission in a vertically integrated poultry operation: Clustering and diversity analysis using phenotyping (serotyping, phage typing) and genotyping (MLVA)
Cited by: 18
Author(s): Helen Crabb, Joanne L. Allen, Joanne M. Devlin, Simon M. Firestone, C. R. Wilks, James R. Gilkerson
Software Mentions: 5
Published: almost 8 years ago

10.1371/journal.pone.0067907

Gene-Metabolite Expression in Blood Can Discriminate Allergen-Induced Isolated Early from Dual Asthmatic Responses
Cited by: 18
Author(s): Amrit Singh, Masatsugu Yamamoto, Sarah Kam, Jian Ruan, Gail M. Gauvreau, Paul M. O'Byrne, J. Mark FitzGerald, R. Robert Schellenberg, Louis‐Philippe Boulet, Gabriella Wojewodka, Cynthia Kanagaratham, Juan B. De Sanctis, Danuta Radzioch, Scott J. Tebbutt
Software Mentions: 5
Published: about 13 years ago

10.1371/journal.pone.0036466

A Metagenomic Approach to Characterization of the Vaginal Microbiome Signature in Pregnancy
Cited by: 546
Author(s): Kjersti M. Aagaard, Kevin Riehle, Jun Ma, Nicola Segata, Toni Ann Mistretta, Cristian Coarfa, Sabeen Raza, Sean Rosenbaum, Ignatia Van den Veyver, Aleksandar Milosavljevic, Dirk Gevers, Curtis Huttenhower, Joseph F. Petrosino, James Versalovic
Software Mentions: 5
Published: about 14 years ago

10.1002/mbo3.681

Do composition and diversity of bacterial communities and abiotic conditions of spring water reflect characteristics of groundwater ecosystems exposed to different agricultural activities?
Cited by: 4
Author(s): Karsten Karczewski, Patricia Göbel, Elisabeth I. Meyer
Software Mentions: 5
Published: about 8 years ago

10.3390/ani10112020

Vaginal Microbiota Is Stable throughout the Estrous Cycle in Arabian Mares
Cited by: 19
Author(s): Marta Barba, Rebeca Martínez-Boví, J.J. Quereda, M. L. Mocé, María Plaza-Dávila, E. Jiménez-Trigos, Ángel Gómez-Martín, Pedro González-Torres, Belén Carbonetto, E. García-Roselló
Software Mentions: 5
Published: over 5 years ago

10.12688/f1000research.25902.1

BCO App: tools for generating BioCompute Objects from next-generation sequencing workflows and computations
Cited by: 2
Author(s): Nan Xiao, Soner Koc, David A. Roberson, Phillip T. Brooks, Manisha Ray, Dennis A. Dean
Software Mentions: 5
Published: almost 6 years ago

10.1186/1471-2164-13-531

Comparative genomic analysis of human infective Trypanosoma cruzi lineages with the bat-restricted subspecies T. cruzi marinkellei
Cited by: 57
Author(s): Oscar Franzén, Carlos Talavera-López, Stephen Ochaya, Claire E. Butler, Louisa A. Messenger, Michael D. Lewis, Martin S. Llewellyn, C. J. Marinkelle, Kevin M. Tyler, Michael A. Miles, Björn Andersson
Software Mentions: 5
Published: over 14 years ago

10.1186/s13059-020-02175-0

Multiomics profiling of primary lung cancers and distant metastases reveals immunosuppression as a common characteristic of tumor cells with metastatic plasticity
Cited by: 32
Author(s): Won‐Chul Lee, Alexandre Reuben, Xin Hu, Nicholas McGranahan, Runzhe Chen, Ali Jalali, Marcelo V. Negrão, Shawna M. Hubert, Chad Tang, Chia-Chin Wu, Anthony San Lucas, Whijae Roh, Kenichi Suda, Jihye Kim, Aik-Choon Tan, David H. Peng, Wei Lü, Ximing Tang, Chi-Wan Chow, Junya Fujimoto, Carmen Behrens, Neda Kalhor, Kazutaka Fukumura, Marcus Coyle, Rebecca Thornton, Curtis Gumbs, Jun Li, Chang-Jiun Wu, Latasha Little, Emily Roarty, Xingzhi Song, J. Jack Lee, Erik P. Sulman, Ganesh Rao, Stephen G. Swisher, Lixia Diao, Jing Wang, John V. Heymach, Jason T. Huse, Paul Scheet, Ignacio I. Wistuba, Don L. Gibbons, P. Andrew Futreal, Jianhua Zhang, Daniel R. Gomez, Jianjun Zhang
Software Mentions: 5
Published: over 5 years ago

10.1016/j.ijppaw.2016.09.002

Helminth community structure in two species of arctic-breeding waterfowl
Cited by: 10
Author(s): Courtney L. Amundson, Nicole Traub, Autumn J. Smith-Herron, Paul L. Flint
Software Mentions: 5
Published: over 9 years ago

10.1371/journal.pone.0246544

Swab pooling: A new method for large-scale RT-qPCR screening of SARS-CoV-2 avoiding sample dilution
Cited by: 21
Author(s): Ana Paula Christoff, Giuliano Netto Flores Cruz, Aline Fernanda Rodrigues Sereia, Dellyana Rodrigues Boberg, Daniela Carolina de Bastiani, Laís Eiko Yamanaka, Gislaine Fongaro, Patrícia Hermes Stoco, Maria Luiza Bazzo, Edmundo C. Grisard, Camila Hernandes, Luiz Felipe Valter de Oliveira
Software Mentions: 5
Published: over 5 years ago

10.1093/gigascience/giab065

SimFFPE and FilterFFPE: improving structural variant calling in FFPE samples
Cited by: 4
Author(s): Lanying Wei, Martin Dugas, Sarah Sandmann
Software Mentions: 5
Published: almost 5 years ago

10.1186/s13071-018-2980-8

Circulation of Dirofilaria immitis and Dirofilaria repens in the Danube Delta Biosphere Reserve, Romania
Cited by: 17
Author(s): Alexandru Tomazatos, Dániel Cadar, Edina Török, Iulia Maranda, Cintia Horváth, Lujza Keresztes, Marina Spînu, Stéphanie Jansen, Hanna Jöst, Jonas Schmidt‐Chanasit, Egbert Tannich, Renke Lühken
Software Mentions: 5
Published: about 8 years ago

10.1371/journal.pgen.1009697

A fast and robust Bayesian nonparametric method for prediction of complex traits using summary statistics
Cited by: 27
Author(s): Geyu Zhou, Hongyu Zhao
Software Mentions: 5
Published: almost 5 years ago

10.1186/s12864-021-07722-y

Unravelling population structure heterogeneity within the genome of the malaria vector Anopheles gambiae
Cited by: 1
Author(s): Melina Campos, Luísa D P Rona, Katie Willis, George K. Christophides, Robert M. MacCallum
Software Mentions: 5
Published: about 5 years ago

10.1371/journal.pone.0242927

Novel methods for epistasis detection in genome-wide association studies
Cited by: 7
Author(s): Lotfi Slim, Clément Chatelain, Chloé-Agathe Azencott, Jean-Philippe Vert
Software Mentions: 5
Published: over 5 years ago

10.1016/j.jpsychires.2020.08.023

Dissociation in relation to other mental health conditions: An exploration using network analysis
Cited by: 27
Author(s): Emma Černis, Robin J. Evans, Anke Ehlers, Daniel Freeman
Software Mentions: 5
Published: over 5 years ago

10.1186/s12859-019-3289-0

Identifying gene-specific subgroups: an alternative to biclustering
Cited by: 3
Author(s): Vincent Branders, Pierre Schaus, Pierre Dupont
Software Mentions: 5
Published: over 6 years ago

10.1186/s12874-018-0531-9

Meta-analysis of binary outcomes via generalized linear mixed models: a simulation study
Cited by: 31
Author(s): Ilyas Bakbergenuly, Elena Kulinskaya
Software Mentions: 5
Published: about 8 years ago

10.1371/journal.pone.0257251

Potential biomarkers of major depression diagnosis and chronicity
Cited by: 10
Author(s): Ana Cecília de Menezes Galvão, Raíssa Nóbrega de Almeida, Geovan Menezes de Sousa Júnior, Mário André Leocádio-Miguel, Fernanda Palhano-Fontes, Dráulio Barros de Araújo, Bruno Lobão-Soares, João Paulo Maia‐de‐Oliveira, Emerson Arcoverde Nunes, Jaime Eduardo Cecílio Hallak, Jerome Sarris, Nicole Leite Galvão-Coelho
Software Mentions: 5
Published: almost 5 years ago

10.1371/journal.pone.0187329

Pleistocene climatic oscillations in Neotropical open areas: Refuge isolation in the rodent Oxymycterus nasutus endemic to grasslands
Cited by: 19
Author(s): Willian Thomaz Peçanha, Sérgio Luiz Althoff, Daniel Galiano, Fernando Marques Quintela, Renan Maestri, Gislene Lopes Gonçalves, Thales Renato Ochotorena de Freitas
Software Mentions: 5
Published: over 8 years ago

10.1186/s12864-020-06784-8

The nuclear and mitochondrial genomes of Frieseomelitta varia – a highly eusocial stingless bee (Meliponini) with a permanently sterile worker caste
Cited by: 13
Author(s): Flávia Cristina de Paula Freitas, A. P. Lourenço, Francis Morais Franco Nunes, Alexandre Rossi Paschoal, Fabiano Carlos Pinto de Abreu, Fábio O. Barbin, Luana Bataglia, Carlos Antônio Mendes Cardoso-Júnior, Mário Sérgio Cervoni, Saura R. Silva, Fernanda Dalarmi, Marco Antônio Del Lama, Thiago S. Depintor, Kátia Maria Ferreira, Paula Salles Gória, Michael C. Jaskot, Denyse Cavalcante Lago, Danielle Luna˗Lucena, Lívia Maria Rosatto Moda, Leonardo Penteado Nascimento, Matheus Pedrino, Franciene Rabiço Oliveira, Fernanda C. Sanches, Douglas Elias Santos, Carolina G. Santos, Joseana Vieira, Angel Roberto Barchuk, Klaus Hartfelder, Zilá Luz Paulino Simões, M. M. G. Bitondi, Daniel Guariz Pinheiro
Software Mentions: 5
Published: about 6 years ago

10.3389/fpsyg.2017.00633

Spontaneous Facial Actions Map onto Emotional Experiences in a Non-social Context: Toward a Component-Based Approach
Cited by: 8
Author(s): Shushi Namba, Russell Sarwar Kabir, Makoto Miyatani, Takashi Nakao
Software Mentions: 5
Published: about 9 years ago

10.1093/gigascience/giy016

Boutiques: a flexible framework to integrate command-line applications in computing platforms
Cited by: 33
Author(s): Tristan Glatard, Gregory Kiar, Tristan Aumentado-Armstrong, Natacha Beck, Pierre Bellec, R. Bernard, Axel Bonnet, Shawn T. Brown, Sorina Camarasu-Pop, Frédéric Cervenansky, Samir Das, Rafael Ferreira da Silva, Guillaume Flandin, Pascal Girard, Krzysztof J. Gorgolewski, Charles R.G. Guttmann, Valérie Hayot‐Sasson, Pierre-Olivier Quirion, Pierre Rioux, Marc-Étienne Rousseau, Alan C. Evans
Software Mentions: 5
Published: over 8 years ago

10.1186/s13059-021-02416-w

MegaLMM: Mega-scale linear mixed models for genomic predictions with thousands of traits
Cited by: 21
Author(s): Daniel E. Runcie, Jiayi Qu, Hao Cheng, Lorin Crawford
Software Mentions: 5
Published: almost 5 years ago

10.3389/fpls.2018.01322

Potential of Genome-Wide Studies in Unrelated Plus Trees of a Coniferous Species, Cryptomeria japonica (Japanese Cedar)
Cited by: 13
Author(s): Yuichiro Hiraoka, Eitaro Fukatsu, Kentaro Mishima, Tomonori Hirao, Kenjiro Teshima, Miho Tamura, Miyoko Tsubomura, Taiichi Iki, Masayuki Kurita, Makoto Takahashi, Atsushi Watanabe
Software Mentions: 5
Published: almost 8 years ago

10.1371/journal.pone.0234052

Can metabolic prediction be an alternative to genomic prediction in barley?
Cited by: 15
Author(s): Mathias Ruben Gemmer, Chris Richter, Yong Jiang, Thomas Schmutzer, Manish L. Raorane, Björn H. Junker, Klaus Pillen, Andreas Maurer
Software Mentions: 5
Published: about 6 years ago

10.1186/s12864-015-2212-y

Accuracy of genomic selection for alfalfa biomass yield in different reference populations
Cited by: 100
Author(s): Paolo Annicchiarico, Nelson Espinoza N., Xuehui Li, Yanling Wei, L. Pecetti, E. Charles Brummer
Software Mentions: 5
Published: over 10 years ago

10.1186/s12864-017-3920-2

Genomic prediction in contrast to a genome-wide association study in explaining heritable variation of complex growth traits in breeding populations of Eucalyptus
Cited by: 59
Author(s): Bárbara S. F. Müller, Leandro G. Neves, Janeo Eustáquio de Almeida Filho, M. D. V. de Resende, Patricio Muñoz, P. E. T. dos Santos, E. Paludzyszyn Filho, Matias Kirst, Dário Grattapaglia
Software Mentions: 5
Published: about 9 years ago

10.1099/mgen.0.000333

Genome structure reveals the diversity of mating mechanisms in Saccharomyces cerevisiae x Saccharomyces kudriavzevii hybrids, and the genomic instability that promotes phenotypic diversity
Cited by: 13
Author(s): Miguel Morard, Yaiza Benavent‐Gil, Guadalupe Ortiz-Tovar, Laura Pérez‐Través, Amparo Querol, Christina Toft, Eladio Barrio
Software Mentions: 5
Published: over 6 years ago

10.7554/eLife.55649

Temperature stress induces mites to help their carrion beetle hosts by eliminating rival blowflies
Cited by: 9
Author(s): Syuan‐Jyun Sun, Rebecca M. Kilner
Software Mentions: 5
Published: almost 6 years ago

10.3389/fmicb.2015.01171

Panamanian frog species host unique skin bacterial communities
Cited by: 94
Author(s): Lisa K. Belden, Myra C. Hughey, Eria A. Rebollar, Thomas P. Umile, Stephen C. Loftus, Elizabeth A. Burzynski, Kevin P. C. Minbiole, Leanna House, Roderick V. Jensen, Matthew H. Becker, Jenifer B. Walke, Daniel Medina, Roberto Ibáñez, Reid N. Harris
Software Mentions: 5
Published: over 10 years ago

10.1038/s12276-019-0264-9

Metformin treatment reduces motor and neuropsychiatric phenotypes in the zQ175 mouse model of Huntington disease
Cited by: 39
Author(s): Ana Sanchís, María Adelaida García-Gimeno, Antonio José Cañada-Martínez, María Dolores Sequedo, José María Millán, Pascual Sanz, Rafael P. Vázquez‐Manrique
Software Mentions: 5
Published: about 7 years ago

10.1002/ece3.4732

Trade-offs for butterfly alpha and beta diversity in human-modified landscapes and tropical rainforests
Cited by: 5
Author(s): Hemchandranauth Sambhu, Alliea Nankishore, Stephen M. Turton, Tobin D. Northfield
Software Mentions: 5
Published: over 7 years ago

10.1371/journal.pone.0154356

Beyond Correlation in the Detection of Climate Change Impacts: Testing a Mechanistic Hypothesis for Climatic Influence on Sockeye Salmon (Oncorhynchus nerka) Productivity
Cited by: 12
Author(s): Michael D. Tillotson, Thomas P. Quinn
Software Mentions: 5
Published: about 10 years ago

10.1371/journal.pgen.1004406

Microbial Succession in the Gut: Directional Trends of Taxonomic and Functional Change in a Birth Cohort of Spanish Infants
Cited by: 139
Author(s): Yvonne Vallès, Alejandro Artacho, Alberto Pascual‐García, María Loreto Ferrús, María José Gosalbes, Juan J. Abellán, M. Pilar Francino
Software Mentions: 5
Published: about 12 years ago

10.1007/s11031-018-9684-4

Individual differences in emotion regulation moderate the associations between empathy and affective distress
Cited by: 42
Author(s): Philip A. Powell
Software Mentions: 5
Published: over 8 years ago

10.1111/mec.14779

How much is enough? Effects of technical and biological replication on metabarcoding dietary analysis
Cited by: 74
Author(s): Vanessa A. Mata, Hugo Rebelo, Francisco Amorim, Gary F. McCracken, Simon Jarman, Pedro Beja
Software Mentions: 5
Published: almost 8 years ago

10.1128/mBio.02635-19

Time after Time: Temporal Variation in the Effects of Grass and Forb Species on Soil Bacterial and Fungal Communities
Cited by: 53
Author(s): S. Emilia Hannula, Anna M. Kielak, Katja Steinauer, Martine Huberty, Renske Jongen, Jonathan R. De Long, Robin Heinen, T. Martijn Bezemer
Software Mentions: 5
Published: over 6 years ago

10.7554/eLife.55305

Unexplained repeated pregnancy loss is associated with altered perceptual and brain responses to men’s body-odor
Cited by: 11
Author(s): Liron Rozenkrantz, Reut Weissgross, Tali Weiss, Inbal Ravreby, Idan Frumin, Sagit Shushan, Lior Gorodisky, Netta Reshef, Yael Holzman, Liron Pinchover, Yaara Endevelt‐Shapira, Eva Mishor, Timna Soroka, Maya Finkel, Liav Tagania, Aharon Ravia, Ofer Perl, Edna Furman‐Haran, Howard Carp, Noam Sobel
Software Mentions: 5
Published: almost 6 years ago

10.1038/srep19244

Evaluation of the 2b-RAD method for genomic selection in scallop breeding
Cited by: 57
Author(s): Jun Dou, Xue Li, Qiang Fu, Wenqian Jiao, Yangping Li, Tianqi Li, Yangfan Wang, Xiaoli Hu, Shi Wang, Zhenmin Bao
Software Mentions: 5
Published: over 10 years ago

10.1038/s41598-018-20823-1

Homogenization and impoverishment of taxonomic and functional diversity of ants in Eucalyptus plantations
Cited by: 65
Author(s): Felipe Martello, Francesco de Bello, Maria Santina de Castro Morini, Rogério Rosa da Silva, Débora Rodriges de Souza-Campana, Milton Cézar Ribeiro, Carlos P. Carmona
Software Mentions: 5
Published: over 8 years ago

10.1111/gcb.14516

Sediment deposition from eroding peatlands alters headwater invertebrate biodiversity
Cited by: 14
Author(s): Lee E. Brown, Katie L. Aspray, Mark E. Ledger, Chris P. Mainstone, Sheila M. Palmer, Martin Wilkes, Joseph Holden
Software Mentions: 5
Published: over 7 years ago

10.3389/fmicb.2021.660190

Relationships Between the Microbial Composition and the Geochemistry and Mineralogy of the Cobalt-Bearing Legacy Mine Tailings in Northeastern Ontario
Cited by: 5
Author(s): Brittaney Courchesne, Michael Schindler, Nadia Mykytczuk
Software Mentions: 5
Published: almost 5 years ago

10.1002/ece3.4839

Toward accurate species‐level metabarcoding of arthropod communities from the tropical forest canopy
Cited by: 44
Author(s): Thomas J. Creedy, Wui Shen Ng, Alfried P. Vogler
Software Mentions: 5
Published: over 7 years ago

10.1002/cam4.3481

Integrated genomic analysis identifies a genetic mutation model predicting response to immune checkpoint inhibitors in melanoma
Cited by: 22
Author(s): Junjie Jiang, Yongfeng Ding, Mengjie Wu, Yanyan Chen, Xiadong Lyu, Jun Lü, Haiyong Wang, Lisong Teng
Software Mentions: 5
Published: almost 6 years ago

10.1371/journal.pone.0180007

Diversity of fruit-feeding butterflies in a mountaintop archipelago of rainforest
Cited by: 18
Author(s): Geanne Carla Novais Pereira, Marcel Serra Coelho, Marina do Vale Beirão, Rodrigo Fagundes Braga, Geraldo Wilson Fernandes
Software Mentions: 5
Published: about 9 years ago

10.1186/s12967-020-02561-z

Gene correlation network analysis to identify regulatory factors in sepsis
Cited by: 25
Author(s): Zhongheng Zhang, Lin Chen, Ping Xu, Lifeng Xing, Yucai Hong, Pengpeng Chen
Software Mentions: 5
Published: almost 6 years ago

10.1001/jamanetworkopen.2019.16205

Association Between Acute Gastroenteritis and Continuous Use of Proton Pump Inhibitors During Winter Periods of Highest Circulation of Enteric Viruses
Cited by: 35
Author(s): Ana‐Maria Vilcu, Laure Sabatte, Thierry Blanchon, Cécile Souty, Milka Maravic, Magali Lemaître, Olivier Steichen, Thomas Hanslik
Software Mentions: 5
Published: over 6 years ago

10.1038/srep26447

MetaTrans: an open-source pipeline for metatranscriptomics
Cited by: 84
Author(s): Xavier Martínez, Marta Pozuelo, Victoria Pascal, David Campos, Marta Gut, Fernando Azpiroz, Francisco Guarner, Chaysavanh Manichanh
Software Mentions: 5
Published: about 10 years ago

10.1038/s41598-021-86002-x

Comprehensive transcriptomic analysis of COVID-19 blood, lung, and airway
Cited by: 102
Author(s): Andrea R. Daamen, Prathyusha Bachali, Katherine A. Owen, Kathryn M. Kingsmore, Erika L. Hubbard, Adam C. Labonte, Robert Robl, Sneha Shrotri, Amrie C. Grammer, Peter E. Lipsky
Software Mentions: 5
Published: over 5 years ago

10.1186/s40168-021-01052-7

Iron status influences non-alcoholic fatty liver disease in obesity through the gut microbiome
Cited by: 54
Author(s): Jordi Mayneris‐Perxachs, Marina Cardellini, Lesley Hoyles, Jéssica Latorre, Francesca Davato, José María Moreno-Navarrete, María Arnoriaga-Rodríguez, Matteo Sérino, James Abbott, Richard H. Barton, Josep Puig, Xavier Fernández-Real, Wifredo Ricart, Christopher Tomlinson, Mark Woodbridge, Paolo Gentileschi, Sarah Butcher, Elaine Holmes, Jeremy K. Nicholson, Vicente Pérez‐Brocal, Andrés Moya, Donald Mc Clain, Rémy Burcelin, Marc Dumas, Massimo Federici, José‐Manuel Fernández‐Real
Software Mentions: 5
Published: about 5 years ago

10.1186/s40168-018-0417-4

Type 1 diabetes susceptibility alleles are associated with distinct alterations in the gut microbiota
Cited by: 56
Author(s): Jane A. Mullaney, J. Stephens, Mary Ellen Costello, Cai Fong, Brooke E. Geeling, Patrick G. Gavin, Casey M. Wright, Timothy D. Spector, Matthew A. Brown, Emma E. Hamilton‐Williams
Software Mentions: 5
Published: over 8 years ago

10.1186/1471-2105-12-S15-S5

Data hosting infrastructure for primary biodiversity data
Cited by: 13
Author(s): Anthony Goddard, Nevin Wilson, Phil Cryer, Grant Yamashita
Software Mentions: 5
Published: over 14 years ago

10.1371/journal.pone.0220881

Comparison of catchment scale 3D and 2.5D modelling of soil organic carbon stocks in Jiangxi Province, PR China
Cited by: 17
Author(s): Tobias Rentschler, Philipp Gries, Thorsten Behrens, Helge Bruelheide, Peter Kühn, Steffen Seitz, Xuezheng Shi, Stefan Trogisch, Thomas Scholten, Karsten Schmidt
Software Mentions: 5
Published: almost 7 years ago

10.1038/s41396-020-00773-1

Benchmarking microbial growth rate predictions from metagenomes
Cited by: 45
Author(s): Andrew M. Long, Songjun Hou, J. Cesar Ignacio‐Espinoza, Jed A. Fuhrman
Software Mentions: 5
Published: almost 6 years ago

10.3389/fpsyg.2018.01343

On the Dependability and Feasibility of Layperson Ratings of Divergent Thinking
Cited by: 26
Author(s): Richard W. Hass, Marisa Rivera, Paul J. Silvia
Software Mentions: 5
Published: almost 8 years ago

10.1186/1471-2164-15-1103

An improved genome of the model marine alga Ostreococcus tauri unfolds by assessing Illumina de novo assemblies
Cited by: 75
Author(s): Romain Blanc-Mathieu, Bram Verhelst, Évelyne Derelle, Stéphane Rombauts, François‐Yves Bouget, Isabelle A. Carré, Annie Château, Adam Eyre‐Walker, Nigel Grimsley, Hervé Moreau, Benoît Piégu, Éric Rivals, Wendy Schackwitz, Yves Van de Peer, Gwenaël Piganeau
Software Mentions: 5
Published: over 11 years ago

10.3390/plants9070886

Gigaspora margarita and Its Endobacterium Modulate Symbiotic Marker Genes in Tomato Roots under Combined Water and Nutrient Stress
Cited by: 4
Author(s): Matteo Chialva, Luisa Lanfranco, Gianluca Guazzotti, Veronica Santoro, Mara Novero, Paola Bonfante
Software Mentions: 5
Published: almost 6 years ago

10.1038/s41598-017-09335-6

Integrative epigenomics, transcriptomics and proteomics of patient chondrocytes reveal genes and pathways involved in osteoarthritis
Cited by: 85
Author(s): Julia Steinberg, Graham R. S. Ritchie, Theodoros I. Roumeliotis, Raveen L Jayasuriya, Matthew Clark, Roger A. Brooks, Abbie L. A. Binch, Karan M. Shah, Rachael Coyle, Mercedes Pardo, Christine Le Maitre, Yolande F M Ramos, Rob G H H Nelissen, Ingrid Meulenbelt, Andrew W. McCaskie, Jyoti S. Choudhary, J. Mark Wilkinson, Eleftheria Zeggini
Software Mentions: 5
Published: almost 9 years ago

10.1186/1868-7083-6-4

Differences in smoking associated DNA methylation patterns in South Asians and Europeans
Cited by: 227
Author(s): Hannah R Elliott, Therese Tillin, Wendy L. McArdle, Karen Ho, Aparna Duggirala, Tim Frayling, George Davey Smith, Alun D. Hughes, Nish Chaturvedi, Caroline L Relton
Software Mentions: 5
Published: over 12 years ago

10.3390/ijms22020787

Full-Length Transcriptome Analysis of Four Different Tissues of Cephalotaxus oliveri
Cited by: 13
Author(s): Ziqing He, Yingjuan Su, Ting Wang
Software Mentions: 5
Published: over 5 years ago