10.1371/journal.pntd.0008671
Novel small RNAs expressed by Bartonella bacilliformis under multiple conditions reveal potential mechanisms for persistence in the sand fly vector and human hostCited by: 6
Author(s): Shaun Wachter, Linda D. Hicks, Rahul Raghavan, Michael F. Minnick
Software Mentions: 5
Published: over 5 years ago
10.1002/evl3.166
Artificial selection reveals the role of transcriptional constraints in the maintenance of life history variationCited by: 6
Author(s): Joel L. Pick, Masaomi Hatakeyama, Kate E. Ihle, Julien Gasparini, Claudy Haussy, Satoshi Ishishita, Yoichi Matsuda, Takashi Yoshimura, Masahiro M. Kanaoka, Rie Shimizu‐Inatsugi, Kentaro Shimizu, Barbara Tschirren
Software Mentions: 5
Published: about 6 years ago
10.1186/s12885-020-07325-y
Identification of a novel subgroup of endometrial cancer patients with loss of thyroid hormone receptor beta expression and improved survivalCited by: 5
Author(s): Daniel G. Piqué, John M. Greally, Jessica C. Mar
Software Mentions: 5
Published: almost 6 years ago
10.7150/jca.46721
Complement sC5b-9 and CH50 increase the risk of cancer-related mortality in patients with non-small cell lung cancerCited by: 1
Author(s): Jing Li, Zhijun Cao, Lijie Mi, Zhihua Xu, Xiangmei Wu
Software Mentions: 5
Published: over 6 years ago
10.1186/s10020-020-00185-z
The significance of m6A RNA methylation regulators in predicting the prognosis and clinical course of HBV-related hepatocellular carcinomaCited by: 33
Author(s): Qiongxuan Fang, Hongsong Chen
Software Mentions: 5
Published: about 6 years ago
10.7554/eLife.11418
An epigenetic switch ensures transposon repression upon dynamic loss of DNA methylation in embryonic stem cellsCited by: 212
Author(s): Marius Walter, Aurélie Teissandier, Raquel Pérez-Palacios, Déborah Bourc’his
Software Mentions: 5
Published: over 10 years ago
10.7717/peerj.9205
Human milk microbiota associated with early colonization of the neonatal gut in Mexican newbornsCited by: 27
Author(s): Karina Corona-Cervantes, Igrid García-González, Loan Edel Villalobos-Flores, Fernando Hernández-Quiroz, Alberto Piña-Escobedo, Carlos Hoyo‐Vadillo, Martín Noé Rangel-Calvillo, Jaime García‐Mena
Software Mentions: 5
Published: about 6 years ago
10.1242/dev.194761
Differential abilities to engage inaccessible chromatin diversify vertebrate HOX binding patternsCited by: 30
Author(s): Milica Bulajić, Divyanshi Srivastava, Jeremy S. Dasen, Hynek Wichterle, Shaun Mahony, Esteban O. Mazzoni
Software Mentions: 5
Published: over 6 years ago
10.1186/s12885-019-5537-0
Identification of ADGRE5 as discriminating MYC target between Burkitt lymphoma and diffuse large B-cell lymphomaCited by: 8
Author(s): Karsten Kleo, Lora Dimitrova, Elisabeth Oker, Nancy Tomaszewski, Erika Gebel Berg, Franziska Taruttis, Julia C. Engelmann, Philipp Schwarzfischer, Jörg Reinders, Rainer Spang, Wolfram Gronwald, Peter J. Oefner, Michael Hummel
Software Mentions: 5
Published: over 7 years ago
10.1186/s13059-014-0511-2
A genomic and evolutionary approach reveals non-genetic drug resistance in malariaCited by: 34
Author(s): Jonathan D. Herman, Daniel P. Rice, Ulf Ribacke, Jacob Silterra, Amy Deik, Eli L. Moss, Kate M Broadbent, Daniel E. Neafsey, Michael M. Desai, Clary B. Clish, Ralph Mazitschek, Dyann F. Wirth
Software Mentions: 5
Published: over 11 years ago
10.1186/s12859-019-2697-5
GSEPD: a Bioconductor package for RNA-seq gene set enrichment and projection displayCited by: 5
Author(s): Karl Stamm, Aoy Tomita‐Mitchell, Serdar Bozdag
Software Mentions: 5
Published: over 7 years ago
10.3390/brainsci11081085
Maternal Immune Activation Causes Social Behavior Deficits and Hypomyelination in Male Rat Offspring with an Autism-Like Microbiota ProfileCited by: 29
Author(s): Gilbert Lee, Yen Kuang Lin, Jing Lai, Yu Chun Lo, Yu Yang, Syuan You Ye, Chia-Jung Lee, Ching Chiung Wang, Yung Hsiao Chiang, Sung Hui Tseng
Software Mentions: 5
Published: almost 5 years ago
10.1371/journal.pone.0230492
Image-based metric of invasiveness predicts response to adjuvant temozolomide for primary glioblastomaCited by: 11
Author(s): Susan Christine Massey, Haylye White, Paula Whitmire, Tatum E Doyle, Sandra K. Johnston, Kyle Singleton, Pamela Jackson, Andrea Hawkins-Daarud, Bernard R. Bendok, Alyx Porter, Sujay A. Vora, Jann N. Sarkaria, Leland Hu, Maciej M. Mrugala, Kristin R. Swanson
Software Mentions: 5
Published: over 6 years ago
10.18632/aging.202559
Infertility network and hub genes for nonobstructive azoospermia utilizing integrative analysisCited by: 6
Author(s): Baoquan Han, Zihui Yan, Shuai Yu, Wei Ge, Yaqi Li, Yan Wang, Bo Yang, Wei Shen, Hui Jiang, Zhongyi Sun
Software Mentions: 5
Published: over 5 years ago
10.1186/s12885-020-6616-y
Epigenetic loss of heterozygosity of Apc and an inflammation-associated mutational signature detected in Lrig1+/−-driven murine colonic adenomasCited by: 1
Author(s): Jessica L. Preston, Nicholas Stiffler
Software Mentions: 5
Published: over 6 years ago
10.3389/fcimb.2021.714162
Characterization of the Oral and Esophageal Microbiota in Esophageal Precancerous Lesions and Squamous Cell CarcinomaCited by: 12
Author(s): Zhengqi Li, Lizhou Dou, Yueming Zhang, Shasha He, Di Zhao, Cui Hao, Gonghua Song, Wei Zhang, Yong Liu, Guiqi Wang
Software Mentions: 5
Published: almost 5 years ago
10.1111/jvim.15671
Effects of nebulized dexamethasone on the respiratory microbiota and mycobiota and relative equine herpesvirus‐1, 2, 4, 5 in an equine model of asthmaCited by: 8
Author(s): Stephanie L. Bond, Matthew L. Workentine, Jana Hundt, James R. Gilkerson, Renaud Léguillette
Software Mentions: 5
Published: over 6 years ago
10.1016/j.jhevol.2017.07.015
The evolution of the platyrrhine talus: A comparative analysis of the phenetic affinities of the Miocene platyrrhines with their modern relativesCited by: 8
Author(s): Thomas A. Püschel, Justin T. Gladman, René Bobe, William I. Sellers
Software Mentions: 5
Published: almost 9 years ago
10.7717/peerj.3246
Microbial communities in sediment from <i>Zostera marina</i> patches, but not the <i>Z. marina</i> leaf or root microbiomes, vary in relation to distance from patch edgeCited by: 77
Author(s): Cassandra L. Ettinger, Sofie E. Voerman, Jenna M. Lang, John J. Stachowicz, Jonathan A. Eisen
Software Mentions: 5
Published: about 9 years ago
10.1038/srep31153
Predicting bee community responses to land-use changes: Effects of geographic and taxonomic biasesCited by: 88
Author(s): Adriana De Palma, Stefan Abrahamczyk, Marcelo A. Aizen, Matthias Albrecht, Yves Basset, Adam J. Bates, Robin J. Blake, Céline Boutin, Rob Bugter, Stuart Connop, Leopoldo Cruz‐López, Saul A. Cunningham, Ben Darvill, Tim Diekötter, Silvia Dorn, Nicola Downing, Martin H. Entling, Nina Farwig, Antonio Felicioli, Steven J. Fonte, Robert Fowler, Markus Franzén, Dave Goulson, Ingo Graß, Mick E. Hanley, Stephen D. Hendrix, Farina Herrmann, Félix Herzog, Andrea Holzschuh, Birgit Jauker, Michael Kessler, M. E. Knight, Andreas Kruess, Patrick Lavelle, Violette Le Féon, Pia E. Lentini, Louise A. Malone, E. J. P. Marshall, Eliana Martínez Pachón, Quinn S. McFrederick, Carolina L. Morales, Sonja Mudri‐Stojnić, Guiomar Nates‐Parra, Sven G. Nilsson, Erik Öckinger, Lynne M. Osgathorpe, Alejandro Parra-H, Carlos A. Peres, Anna Persson, Theodora Petanidou, Katja Poveda, Eileen F. Power, Marino Quaranta, Carolina Quintero, Romina Rader, Miriam H. Richards, T’ai H. Roulston, Laurent Rousseau, John Sadler, Ulrika Samnegård, Nancy A. Schellhorn, Christof Schüepp, Oliver Schweiger, Allan H. Smith-Pardo, Ingolf Steffan‐Dewenter, Jane C. Stout, Rebecca K. Tonietto, Teja Tscharntke, Jason M. Tylianakis, Hans A. F. Verboven, Carlos Vergara, J. Verhulst, Catrin Westphal, Hyung Joo Yoon, Andy Purvis
Software Mentions: 5
Published: almost 10 years ago
10.1186/s12859-017-1589-9
Subgroup detection in genotype data using invariant coordinate selectionCited by: 6
Author(s): Daniel Fischer, Mervi Honkatukia, Maria Tuiskula-Haavisto, Klaus Nordhausen, D. Cavero, Rudolf Preisinger, Johanna Vilkki
Software Mentions: 5
Published: over 9 years ago
10.1038/s41598-021-85262-x
Evaluation of genetic diversity and management of disease in Border Collie dogsCited by: 7
Author(s): Pamela Xing Yi Soh, Wei-Feng Hsu, Mehar S. Khatkar, Peter Williamson
Software Mentions: 5
Published: over 5 years ago
10.3390/jcm10112524
Evaluation of Intracranial Hypertension in Traumatic Brain Injury Patient: A Noninvasive Approach Based on Cranial Computed Tomography FeaturesCited by: 4
Author(s): Yingchi Shan, Yihua Li, Xuxu Xu, Junfeng Feng, Xiang Wu, Guoyi Gao
Software Mentions: 5
Published: about 5 years ago
10.1155/2021/3603030
BOP1 Used as a Novel Prognostic Marker and Correlated with Tumor Microenvironment in Pan-CancerCited by: 2
Author(s): Wei Li, Peipei Song, Mengyuan Zhao, Lina Gao, Jianqin Xie, Chongge You
Software Mentions: 5
Published: almost 5 years ago
10.1016/j.cell.2016.09.006
Inheritable Silencing of Endogenous Genes by Hit-and-Run Targeted Epigenetic EditingCited by: 349
Author(s): Angelo Amabile, Alessandro Migliara, Paola Capasso, Mauro Biffi, Davide Cittaro, Luigi Naldini, Angelo Lombardo
Software Mentions: 5
Published: almost 10 years ago
10.1186/s12859-020-03691-3
Analysis of genomic and transcriptomic variations as prognostic signature for lung adenocarcinomaCited by: 31
Author(s): Talip Zengin, Tuğba Önal-Süzek
Software Mentions: 5
Published: almost 6 years ago
10.1002/cam4.1802
Marital status and survival in patients with soft tissue sarcoma: A population‐based, propensity‐matched studyCited by: 21
Author(s): Shilong Zhang, Wen-Rong Wang, Ze‐juan Liu, Zhiming Wang
Software Mentions: 5
Published: over 7 years ago
10.1371/journal.pgen.1006648
Adaptation of A-to-I RNA editing in DrosophilaCited by: 56
Author(s): Yuange Duan, Shengqian Dou, Shiqi Luo, Hong Zhang, Jian Lü
Software Mentions: 5
Published: over 9 years ago
10.1371/journal.ppat.1009097
Vaginal microbiome-hormonal contraceptive interactions associate with the mucosal proteome and HIV acquisitionCited by: 17
Author(s): Laura Noël‐Romas, Michelle Perner, Refilwe P. Molatlhegi, Christina Farr Zuend, Amanda Mabhula, Sarah Hoger, Alana Lamont, Kenzie Birse, Alicia R. Berard, Stuart McCorrister, Garett Westmacott, Al Leslie, Vanessa Poliquin, Renee Heffron, Lyle R. McKinnon, Adam Burgener
Software Mentions: 5
Published: over 5 years ago
10.1186/s12859-015-0670-5
QoRTs: a comprehensive toolset for quality control and data processing of RNA-Seq experimentsCited by: 211
Author(s): Stephen W. Hartley, James C. Mullikin
Software Mentions: 5
Published: almost 11 years ago
10.3389/fphar.2020.592116
Pros and Cons of Aspirin for the Primary Prevention of Cardiovascular Events: A Secondary Study of Trial Sequential AnalysisCited by: 8
Author(s): Binghao Zhao, Qian Wu, Li Wang, Chen Di Liao, Dong Yan, Jianpeng Xu, Yiping Wei
Software Mentions: 5
Published: over 5 years ago
10.1371/journal.pone.0215351
The bacterial communities of the small intestine and stool in children with short bowel syndromeCited by: 14
Author(s): Steven L. Zeichner, Emmanuel F. Mongodin, Lauren E. Hittle, Szu-Han Huang, Clarivet Torres
Software Mentions: 5
Published: about 7 years ago
10.1038/sdata.2016.51
Comprehensive RNA-Seq profiling to evaluate lactating sheep mammary gland transcriptomeCited by: 40
Author(s): Aroa Suárez-Vega, Beatriz Gutiérrez-Gil, Christophe Klopp, Gwenola Tosser‐Klopp, J. J. Arranz
Software Mentions: 5
Published: about 10 years ago
10.3389/fmicb.2021.647977
Probiotic Yeasts and Vibrio anguillarum Infection Modify the Microbiome of Zebrafish LarvaeCited by: 12
Author(s): Orlando Vargas, María Soledad Gutiérrez, Mario Caruffo, Benjamín Valderrama, Daniel A. Medina, Katherine García, Angélica Reyes-Jara, Mauricio Toro, Carmen G. Feijóo, Paola Navarrete
Software Mentions: 5
Published: about 5 years ago
10.1111/acel.13320
BiT age: A transcriptome‐based aging clock near the theoretical limit of accuracyCited by: 45
Author(s): David Meyer, Björn Schumacher
Software Mentions: 5
Published: over 5 years ago
10.1186/s13014-021-01810-9
Impact of feature selection methods and subgroup factors on prognostic analysis with CT-based radiomics in non-small cell lung cancer patientsCited by: 15
Author(s): Yuto Sugai, Noriyuki Kadoya, Shohei Tanaka, Shunpei Tanabe, Mariko Umeda, Takaya Yamamoto, Kazuya Takeda, Suguru Dobashi, Haruna Ohashi, Ken Takeda, Keiichi Jingu
Software Mentions: 5
Published: about 5 years ago
10.3390/rs11050551
The Influence of Region of Interest Heterogeneity on Classification Accuracy in Wetland SystemsCited by: 11
Author(s): Tedros M. Berhane, Hugo Costa, Charles R. Lane, Oleg A. Anenkhonov, Victor V. Chepinoga, Bradley C. Autrey
Software Mentions: 5
Published: over 7 years ago
10.3390/cells9061534
Transcriptomic microRNA Profiling of Dendritic Cells in Response to Gut Microbiota-Secreted VesiclesCited by: 13
Author(s): Natalia Díaz-Garrido, Sarah Bonnin, Marta Riera, Rosa Gíménez, Josefa Badı́a, Laura Baldomà
Software Mentions: 5
Published: about 6 years ago
10.7554/eLife.62850
Individual differences in honey bee behavior enabled by plasticity in brain gene regulatory networksCited by: 24
Author(s): Beryl M. Jones, Vikyath D. Rao, Tim Gernat, Tobias Jagla, Amy Cash Ahmed, Rubin Be, Troy J. Comi, Shounak Bhogale, Syed Sameed Husain, Charles Blatti, Martin Middendorf, Saurabh Sinha, Sriram Chandrasekaran, Gene E. Robinson
Software Mentions: 5
Published: over 5 years ago
10.1038/s41598-018-30657-6
Deep Learning and Radiomics predict complete response after neo-adjuvant chemoradiation for locally advanced rectal cancerCited by: 125
Author(s): Jean‐Emmanuel Bibault, P. Giraud, M. Housset, C. Durdux, Julien Taieb, Anne Berger, Romain Coriat, Stanislas Chaussade, B. Dousset, Bernard Nordlinger, Anita Burgun
Software Mentions: 5
Published: almost 8 years ago
10.1186/1471-2105-9-303
A unified approach to false discovery rate estimationCited by: 343
Author(s): Korbinian Strimmer
Software Mentions: 5
Published: about 18 years ago
10.3389/fgene.2021.730003
Identification of Autophagy Related circRNA-miRNA-mRNA-Subtypes Network With Radiotherapy Responses and Tumor Immune Microenvironment in Non-small Cell Lung CancerCited by: 12
Author(s): Limin Fan, Baosheng Li, Li Zhao, Liang Sun
Software Mentions: 5
Published: almost 5 years ago
10.1186/s40168-017-0392-1
Metabolic capability and in situ activity of microorganisms in an oil reservoirCited by: 61
Author(s): Yi Fan Liu, Daniela Domingos Galzerani, Serge Maurice Mbadinga, Livia S. Zaramela, Ji Dong Gu, Bo Zhong Mu, Karsten Zengler
Software Mentions: 5
Published: over 8 years ago
10.1093/database/baaa096
The IMEx coronavirus interactome: an evolving map of <i>Coronaviridae</i>–host molecular interactionsCited by: 31
Author(s): Livia Perfetto, Chiara Pastrello, Noemi del-Toro, Margaret Duesbury, Marta Iannuccelli, Max Kotlyar, Luana Licata, Birgit Meldal, Kalpana Panneerselvam, Simona Panni, Negin Rahimzadeh, Sylvie Ricard‐Blum, Łukasz Salwiński, Anjali Shrivastava, Gianni Cesareni, Matteo Pellegrini, Sandra Orchard, Igor Jurišica, Henning Hermjakob, Pablo Porras
Software Mentions: 5
Published: over 6 years ago
10.1186/s13195-020-00716-0
Prognosis prediction model for conversion from mild cognitive impairment to Alzheimer’s disease created by integrative analysis of multi-omics dataCited by: 27
Author(s): Daichi Shigemizu, Shintaro Akiyama, Sayuri Higaki, Toshiyuki Sugimoto, Takashi Sakurai, Keith A. Boroevich, Alok Sharma, Tatsuhiko Tsunoda, Takahiro Ochiya, Shumpei Niida, Kouichi Ozaki
Software Mentions: 5
Published: over 5 years ago
10.1164/rccm.202003-0510OC
Whole-Blood RNA Profiles Associated with Pulmonary Arterial Hypertension and Clinical OutcomeCited by: 36
Author(s): Christopher J. Rhodes, Pablo Otero-Núñez, John Wharton, Emilia M. Swietlik, Sokratis Kariotis, Lars Harbaum, Mark J. Dunning, Jason M. Elinoff, Niamh Errington, A. A. Roger Thompson, James Iremonger, J. Gerry Coghlan, Paul A. Corris, Luke Howard, David G. Kiely, Colin Church, Joanna Pepke‐Zaba, Mark Toshner, Stephen J. Wort, Ankit A. Desai, Marc Humbert, William C. Nichols, Laura Southgate, David‐Alexandre Trégouët, Richard Trembath, Inga Prokopenko, Stefan Gräf, Nicholas W. Morrell, Dennis Wang, Allan Lawrie, Martin R. Wilkins
Software Mentions: 5
Published: almost 6 years ago
10.1038/s41598-018-36471-4
Astrocytoma progression scoring system based on the WHO 2016 criteriaCited by: 12
Author(s): Zhen-Hang Li, Yanlei Guan, Qiang Liu, Yao Wang, Run Cui, Yunjie Wang
Software Mentions: 5
Published: over 7 years ago
10.1371/journal.pone.0167488
Cell-Based Systems Biology Analysis of Human AS03-Adjuvanted H5N1 Avian Influenza Vaccine Responses: A Phase I Randomized Controlled TrialCited by: 46
Author(s): Leigh M. Howard, Kristen L. Hoek, Johannes Goll, Parimal Samir, Allison C. Galassie, Tara M. Allos, Xinnan Niu, Laura E. Gordy, C. Buddy Creech, Nripesh Prasad, Travis L. Jensen, Heather Hill, Shawn Levy, Sebastian Joyce, Andrew J. Link, Kathryn M. Edwards
Software Mentions: 5
Published: over 9 years ago
10.1038/s41598-021-93297-3
Zfp57 inactivation illustrates the role of ICR methylation in imprinted gene expression during neural differentiation of mouse ESCsCited by: 7
Author(s): Basilia Acurzio, Ankit Verma, Alessia Polito, Carlo Giaccari, Francesco Cecere, Salvatore Fioriniello, Floriana Della Ragione, Annalisa Fico, Flavia Cerrato, Claudia Angelini, Robert Feil, Andrea Riccio
Software Mentions: 5
Published: about 5 years ago
10.1371/journal.pone.0153925
Molecular Characterization and Global Expression Analysis of Lectin Receptor Kinases in Bread Wheat (Triticum aestivum)Cited by: 66
Author(s): . Shumayla, Shailesh Sharma, Ajay Kumar Pandey, Kashmir Singh, Santosh Kumar Upadhyay
Software Mentions: 5
Published: about 10 years ago
10.7554/eLife.27014
Regulation of life span by the gut microbiota in the short-lived African turquoise killifishCited by: 262
Author(s): Patrick M. Smith, David Willemsen, Miriam Popkes, Franziska Metge, Edson Gandiwa, Martin Reichard, Dario Riccardo Valenzano
Software Mentions: 5
Published: almost 9 years ago
10.1038/s41598-019-53298-9
A pilot study of peripheral blood DNA methylation models as predictors of knee osteoarthritis radiographic progression: data from the Osteoarthritis Initiative (OAI)Cited by: 10
Author(s): Christopher M. Dunn, Michael C. Nevitt, J.A. Lynch, Matlock A. Jeffries
Software Mentions: 5
Published: over 6 years ago
10.1371/journal.pone.0194131
Instar- and host-associated differentiation of bacterial communities in the Mediterranean fruit fly Ceratitis capitataCited by: 55
Author(s): Antonino Malacrinò, Orlando Campolo, Raúl F. Medina, Vincenzo Palmeri
Software Mentions: 5
Published: over 8 years ago
10.1038/srep25668
Etiology matters – Genomic DNA Methylation Patterns in Three Rat Models of Acquired EpilepsyCited by: 76
Author(s): Konrad J. Dębski, Asla Pitkänen, Noora Puhakka, Anna Bot, Ishant Khurana, K N Harikrishnan, Mark Ziemann, Antony Kaspi, Assam El‐Osta, Katarzyna Łukasiuk, Katja Kobow
Software Mentions: 5
Published: about 10 years ago
10.1002/cam4.3959
IBSP, a potential recurrence biomarker, promotes the progression of colorectal cancer via Fyn/β‐catenin signaling pathwayCited by: 8
Author(s): Cheng Yan, Ying Qin, Mengmeng Dai, Liping Liu, Yicheng Ni, Qiao Sun, Lulu Li, Yaoyao Zhou, Cheng Qiu, Yuyang Jiang
Software Mentions: 5
Published: about 5 years ago
10.1002/evl3.129
Methylation and gene expression differences between reproductive and sterile bumblebee workersCited by: 48
Author(s): Hollie Marshall, Zoë N. Lonsdale, Eamonn B. Mallon
Software Mentions: 5
Published: almost 7 years ago
10.1371/journal.pgen.1007828
The Integrator complex regulates differential snRNA processing and fate of adult stem cells in the highly regenerative planarian Schmidtea mediterraneaCited by: 13
Author(s): David Schmidt, Hanna Reuter, Katja Hüttner, Larissa Ruhe, Franziska Rabert, Florian Seebeck, Manuel Irimia, Jordi Solana, Kerstin Bartscherer
Software Mentions: 5
Published: over 7 years ago
10.1186/s13321-019-0399-7
HastaLaVista, a web-based user interface for NMR-based untargeted metabolic profiling analysis in biomedical sciences: towards a new publication standardCited by: 3
Author(s): Julien Wist
Software Mentions: 5
Published: over 6 years ago
10.1371/journal.pone.0238304
Investigation of gene-gene interactions in cardiac traits and serum fatty acid levels in the LURIC Health StudyCited by: 5
Author(s): Jiayan Zhou, Kristin Passero, Nicole Palmiero, Bertram Müller‐Myhsok, Marcus E. Kleber, Winfried Maerz, Molly A. Hall
Software Mentions: 5
Published: almost 6 years ago
10.1128/mSystems.00007-18
Asymptomatic Intestinal Colonization with Protist <i>Blastocystis</i> Is Strongly Associated with Distinct Microbiome Ecological PatternsCited by: 86
Author(s): Miriam Nieves-Ramı́rez, Oswaldo Partida-Rodríguez, Isabelle Laforest‐Lapointe, Lisa A. Reynolds, Eric Brown, A. Valdez-Salazar, P. Morán-Silva, Liliana Rojas-Velázquez, Evan Morien, Laura Wegener Parfrey, Mingliang Jin, Jens Walter, Javier Torres, Marie‐Claire Arrieta, C. Ximénez-García, B. Brett Finlay
Software Mentions: 5
Published: about 8 years ago
10.1038/s41598-020-80453-4
Prognostic signature of lung adenocarcinoma based on stem cell-related genesCited by: 7
Author(s): Zhanghao Huang, Muqi Shi, Hao Zhou, Jinjie Wang, Haijian Zhang, Jia Hai Shi
Software Mentions: 5
Published: over 5 years ago
10.1186/s12917-020-02660-5
Subgingival microbiota of dogs with healthy gingiva or early periodontal disease from different geographical locationsCited by: 12
Author(s): Corrin Wallis, Lisa Milella, Alison Colyer, Ciaran O’Flynn, Stephen Harris, Lucy J. Holcombe
Software Mentions: 5
Published: over 5 years ago
10.1093/iob/obab019
The Evolutionary History of Siphonophore Tentilla: Novelties, Convergence, and IntegrationCited by: 2
Author(s): Alejandro Damián-Serrano, Steven H. D. Haddock, Casey W. Dunn
Software Mentions: 5
Published: over 5 years ago
10.1371/journal.pone.0193417
Sex- and brain region-specific patterns of gene expression associated with socially-mediated puberty in a eusocial mammalCited by: 20
Author(s): Mariela Faykoo-Martinez, D. Ashley Monks, Iva B. Zovkic, Melissa M. Holmes
Software Mentions: 5
Published: over 8 years ago
10.3390/genes12020312
Quantitative Approach to Fish Cytogenetics in the Context of Vertebrate Genome EvolutionCited by: 7
Author(s): Veronika Borůvková, W. Mike Howell, Dominik Matoulek, Radka Symonová
Software Mentions: 5
Published: over 5 years ago
10.3390/diagnostics11071245
Mandibular Third Molar Surgery: Intraosseous Localization of the Inferior Alveolar Nerve Using 3D Double-Echo Steady-State MRI (3D-DESS)Cited by: 10
Author(s): Adib Al‐Haj Husain, Bernd Stadlinger, Sebastian Winklhofer, Marcel Müller, Marco Piccirelli, Silvio Valdec
Software Mentions: 5
Published: about 5 years ago
10.1038/sdata.2018.218
Small non-coding RNA expression in mouse nephrogenic mesenchymal progenitorsCited by: 4
Author(s): Yu Leng Phua, Andrew Clugston, Kevin Hong Chen, Dennis Kostka, Jacqueline Ho
Software Mentions: 5
Published: over 7 years ago
10.1186/s12284-019-0322-x
Signatures of differential selection in chloroplast genome between japonica and indicaCited by: 17
Author(s): Lin Cheng, Jungrye Nam, Sang-Ho Chu, Rungnapa Phitaktansakul, Myeong-Hyeon Min, Cheng Yuan, Ji-Min Yoo, Jee-Su Kang, Kyu‐Won Kim, Yong‐Jin Park
Software Mentions: 5
Published: almost 7 years ago
10.1038/s41598-021-92448-w
Focused CRISPR-Cas9 genetic screening reveals USO1 as a vulnerability in B-cell acute lymphoblastic leukemiaCited by: 8
Author(s): Amit Jaiswal, Hellen Truong, Tiffany Tran, Tasha Lin, David Casero, Michael O. Alberti, Dinesh S. Rao
Software Mentions: 5
Published: about 5 years ago
10.1038/srep21557
Metabolic/Proteomic Signature Defines Two Glioblastoma Subtypes With Different Clinical OutcomeCited by: 73
Author(s): Giovanna Marziali, Michele Signore, Mariachiara Buccarelli, Sveva Grande, Alessandra Palma, Mauro Biffoni, Antonella Rosi, Quintino Giorgio D’Alessandris, Maurizio Martini, Luigi Maria Larocca, Ruggero De Maria, Roberto Pallini, Lucia Ricci‐Vitiani
Software Mentions: 5
Published: over 10 years ago
10.1038/s41598-020-76289-7
Plant functional traits are correlated with species persistence in the herb layer of old-growth beech forestsCited by: 14
Author(s): Giandiego Campetella, Stefano Chelli, Enrico Simonetti, Claudia Damiani, Sándor Bartha, Camilla Wellstein, Daniele Giorgini, Nicola Puletti, Ladislav Mucina, Marco Cervellini, Roberto Canullo
Software Mentions: 5
Published: over 5 years ago
10.1186/s12917-018-1515-z
Cattle transhumance and agropastoral nomadic herding practices in Central CameroonCited by: 29
Author(s): Paolo Carlo Motta, Thibaud Porphyre, Saidou M. Hamman, K. L. Morgan, Victor Ngu Ngwa, Vincent N. Tanya, Eran A. Raizman, Ian Handel, Barend Mark de Clare Bronsvoort
Software Mentions: 5
Published: about 8 years ago
10.1371/journal.pone.0234908
Machine learning and natural language processing methods to identify ischemic stroke, acuity and location from radiology reportsCited by: 59
Author(s): Charlene Ong, Agni Orfanoudaki, Rebecca Zhang, Francois Pierre M. Caprasse, Meghan R. Hutch, Liang Ma, Darian Fard, Oluwafemi Balogun, Matthew Miller, Margaret A. Minnig, Hanife Saglam, Brenton Prescott, David M. Greer, Stelios M. Smirnakis, Dimitris Bertsimas
Software Mentions: 5
Published: about 6 years ago
10.1186/s12859-020-03862-2
Mixed logistic regression in genome-wide association studiesCited by: 2
Author(s): Jacqueline Milet, David Courtin, André Garcia, Hervé Perdry
Software Mentions: 5
Published: over 5 years ago
10.1128/mSystems.00323-18
Gut Microbiota Has a Widespread and Modifiable Effect on Host Gene RegulationCited by: 62
Author(s): Allison L. Richards, Amanda L. Muehlbauer, Adnan Alazizi, Michael B. Burns, Anthony Findley, Francesco Messina, Trevor Gould, Camilla Cascardo, Roger Piqué-Regi, Ran Blekhman, Francesca Luca
Software Mentions: 5
Published: over 6 years ago
10.1186/s42523-021-00080-w
The skin microbiome of Xenopus laevis and the effects of husbandry conditionsCited by: 7
Author(s): Maya Z. Piccinni, Joy E. M. Watts, Marie Fourny, Matthew Guille, Samuel Robson
Software Mentions: 5
Published: over 5 years ago
10.1128/AEM.02992-18
Characterizing the Key Agents in a Disease-Suppressed Soil Managed by Reductive Soil DisinfestationCited by: 33
Author(s): Liang Liang Liu, Xinqi Huang, Jun Zhao, Jinbo Zhang, Zucong Cai
Software Mentions: 5
Published: over 7 years ago
10.3390/ijms20194688
SNPs rs11240569, rs708727, and rs823156 in SLC41A1 Do Not Discriminate Between Slovak Patients with Idiopathic Parkinson’s Disease and Healthy Controls: Statistics and Machine-Learning EvidenceCited by: 7
Author(s): Michal Cibulka, Mária Brodňanová, Marián Grendár, Milan Grofik, Egon Kurča, Ivana Pilchová, Oto Osina, Zuzana Tatarková, Dušan Dobrota, Martin Kolísek
Software Mentions: 5
Published: almost 7 years ago
10.1038/s41598-018-36147-z
Geometric morphometrics of nested symmetries unravels hierarchical inter- and intra-individual variation in biological shapesCited by: 8
Author(s): Yoland Savriama, Sylvain Gerber
Software Mentions: 5
Published: over 7 years ago
10.18632/aging.202801
The construction and analysis of a ferroptosis-related gene prognostic signature for pancreatic cancerCited by: 26
Author(s): Pei-Cheng Jiang, Feng Yang, Caifeng Zou, Tianyuan Bao, Mengmeng Wu, Dongqin Yang, Shurui Bu
Software Mentions: 5
Published: over 5 years ago
10.3389/fmicb.2020.01614
Replacing Barley and Soybean Meal With By-products, in a Pasture Based Diet, Alters Daily Methane Output and the Rumen Microbial Community in vitro Using the Rumen Simulation Technique (RUSITEC)Cited by: 7
Author(s): Pamela M. Smith, Sinéad M. Waters, David A. Kenny, T. M. Boland, J. S. Heffernan, A. K. Kelly
Software Mentions: 5
Published: almost 6 years ago
10.1111/joa.13228
Morphological variability is greater at developing than mature mouse neuromuscular junctionsCited by: 24
Author(s): Aleksandra M. Mech, Anna‐Leigh Brown, Giampietro Schiavo, James N. Sleigh
Software Mentions: 5
Published: about 6 years ago
10.1289/ehp.1205575
Maternal Exposure to Particulate Air Pollution and Term Birth Weight: A Multi-Country Evaluation of Effect and HeterogeneityCited by: 343
Author(s): Payam Dadvand, Jennifer D. Parker, Michelle L. Bell, Matteo Bonzini, Michael Bräuer, Lyndsey A. Darrow, Ulrike Gehring, Svetlana V. Glinianaia, Nélson Gouveia, Eun Hee Ha, Jong Han Leem, Edith H. van den Hooven, Bin Jalaludin, Bill M. Jesdale, Johanna Lepeule, Rachel Morello‐Frosch, Geoffrey G. Morgan, Angela Cecilia Pesatori, Frank H. Pierik, Tanja Pless‐Mulloli, David Q. Rich, Sheela Sathyanarayana, Ju‐Hee Seo, Rémy Slama, Matthew Strickland, Lillian Tamburic, Daniel Wartenberg, Mark Nieuwenhuijsen, Tracey J. Woodruff
Software Mentions: 5
Published: over 13 years ago
10.1038/s41598-021-91684-4
Peptide profiling in cow urine reveals molecular signature of physiology-driven pathways and in-silico predicted bioactive propertiesCited by: 6
Author(s): Rohit Kumar, Syed Azmal Ali, Sumit Kumar Singh, Vanya Bhushan, Jai K. Kaushik, Ashok Kumar Mohanty, Sanjay Kumar
Software Mentions: 5
Published: about 5 years ago
10.7717/peerj.2582
Performance of joint modelling of time-to-event data with time-dependent predictors: an assessment based on transition to psychosis dataCited by: 24
Author(s): Hok Pan Yuen, Andrew Mackinnon
Software Mentions: 5
Published: over 9 years ago
10.1111/1462-2920.15484
Effect of salinity on cable bacteria species composition and diversityCited by: 19
Author(s): Ann‐Sofie Dam, Ian P. G. Marshall, Nils Risgaard‐Petersen, Laurine D. W. Burdorf, Ugo Marzocchi
Software Mentions: 5
Published: about 5 years ago
10.1038/s41598-018-26484-4
Network-guided genomic and metagenomic analysis of the faecal microbiota of the critically endangered kakapoCited by: 11
Author(s): David W. Waite, Melissa Dsouza, Yuji Sekiguchi, Philip Hugenholtz, Michael W. Taylor
Software Mentions: 5
Published: about 8 years ago
10.3390/foods9091169
A Systematic Review and Meta-Analysis of the Effects of Food Safety and Hygiene Training on Food HandlersCited by: 28
Author(s): Andrea Insfran-Rivarola, Diego Tlapa, Jorge Limón-Romero, Yolanda Báez-López, Marco A. Miranda-Ackerman, Karina Cecilia Arredondo-Soto, S. Ontiveros
Software Mentions: 5
Published: almost 6 years ago
10.1038/s41598-018-21874-0
Degradation shaped bacterial and archaeal communities with predictable taxa and their association patterns in Zoige wetland at Tibet plateauCited by: 40
Author(s): Yunfu Gu, Yan Bai, Quanju Xiang, Xiumei Yu, Ke Zhao, Xiaoping Zhang, Chaonan Li, Songqin Liu, Qiang Chen
Software Mentions: 5
Published: over 8 years ago
10.3390/diagnostics11091592
Anti-DFS70 Antibodies for Differentiating Systemic Autoimmune Rheumatic Disease in Patients with Positive ANA Tests: A Systematic Review and Meta-AnalysisCited by: 9
Author(s): Colin C.J. Cheng, Ming‐Chieh Shih, Ting Lan, Ko-Jen Li
Software Mentions: 5
Published: almost 5 years ago
10.1186/1471-2164-8-191
C-terminal motif prediction in eukaryotic proteomes using comparative genomics and statistical over-representation across protein familiesCited by: 15
Author(s): Ryan E Austin, Nicholas J. Provart, Sean R. Cutler
Software Mentions: 5
Published: about 19 years ago
10.1098/rsos.180707
Decomposing the effects of ocean environments on predator–prey body-size relationships in food websCited by: 6
Author(s): Tomoya Dobashi, Midori Iida, Kazuhiro Takemoto
Software Mentions: 5
Published: about 8 years ago
10.1155/2020/3813546
Identification and Validation of a Potential Prognostic 7-lncRNA Signature for Predicting Survival in Patients with Multiple MyelomaCited by: 6
Author(s): Yun Zhong, Zhe Liu, Dangchi Li, Qinyuan Liao, Jingao Li
Software Mentions: 5
Published: over 5 years ago
10.1111/gcb.15548
Systemic effects of rising atmospheric vapor pressure deficit on plant physiology and productivityCited by: 74
Author(s): José R. López, Danielle A. Way, Walid Sadok
Software Mentions: 5
Published: over 5 years ago
10.3389/fonc.2021.608608
Current Evidence of the Efficacy and Safety of Neoadjuvant EGFR-TKIs for Patients With Non-small Cell Lung CancerCited by: 5
Author(s): Xiaoshun Shi, Xiaoying Dong, Jianxue Zhai, Xiguang Liu, Da-Yong Lu, Zhen Ni, Hua Wu, Kaican Cai
Software Mentions: 5
Published: about 5 years ago
10.1371/journal.pone.0251818
A systematic review of spatial habitat associations and modeling of marine fish distribution: A guide to predictors, methods, and knowledge gapsCited by: 13
Author(s): Bradley A. Pickens, Rachel Carroll, Michael J. Schirripa, Francesca C. Forrestal, Kevin D. Friedland, James C. Taylor
Software Mentions: 5
Published: about 5 years ago
10.3389/fmicb.2017.01574
Culture Media and Individual Hosts Affect the Recovery of Culturable Bacterial Diversity from Amphibian SkinCited by: 25
Author(s): Daniel Medina, Jenifer B. Walke, Zachary Gajewski, Matthew H. Becker, Meredith C. Swartwout, Lisa K. Belden
Software Mentions: 5
Published: almost 9 years ago
10.1371/journal.pone.0037818
Bacterial Communities in Women with Bacterial Vaginosis: High Resolution Phylogenetic Analyses Reveal Relationships of Microbiota to Clinical CriteriaCited by: 511
Author(s): Sujatha Srinivasan, Noah G. Hoffman, Martin Morgan, F. A. Matsen, Tina L. Fiedler, Richard Hall, Frederick J. Ross, Connor O. McCoy, Roger E. Bumgarner, Jeanne M. Marrazzo, David N. Fredricks
Software Mentions: 5
Published: about 14 years ago
10.3389/fonc.2021.650026
Fecal Microbiota and Gut Microbe-Derived Extracellular Vesicles in Colorectal CancerCited by: 33
Author(s): Jihye Park, Nam-Eun Kim, Hyuk Yoon, Cheol Min Shin, Nayoung Kim, Dong Hoon Lee, Jae Yong Park, Chang Hwan Choi, Jae Gyu Kim, Eui Chong Kim, Tae-Seop Shin, Jinho Yang, Young Soo Park
Software Mentions: 5
Published: almost 5 years ago
10.1098/rsos.160647
Predicting evolution in response to climate change: the example of sprouting probability in three dormancy-prone orchid speciesCited by: 15
Author(s): Richard P. Shefferson, Ryo Mizuta, Michael J. Hutchings
Software Mentions: 5
Published: over 9 years ago