10.1186/s12864-020-06809-2

Gene expression predictions and networks in natural populations supports the omnigenic theory
Cited by: 22
Author(s): Aurélien Chateigner, Marie-Claude Lesage-Descauses, Odile Rogier, Véronique Jorge, Jean‐Charles Leplé, Véronique Brunaud, Christine Paysant‐Le Roux, Ludivine Soubigou‐Taconnat, Marie‐Laure Martin‐Magniette, Leopoldo Sánchez, Vincent Segura
Software Mentions: 5
Published: about 6 years ago

10.3390/ijms20225594

Lipid Related Genes Altered in NASH Connect Inflammation in Liver Pathogenesis Progression to HCC: A Canonical Pathway
Cited by: 19
Author(s): Christophe Desterke, Franck Chiappini
Software Mentions: 5
Published: over 6 years ago

10.3390/microorganisms9020229

Arbuscular Mycorrhizal Fungal Communities in the Soils of Desert Habitats
Cited by: 15
Author(s): Martti Vasar, John Davison, Siim‐Kaarel Sepp, Maarja Öpik, Mari Moora, Kadri Koorem, Yiming Meng, Jane Oja, Asem A. Akhmetzhanova, Saleh Al‐Quraishy, В. Г. Онипченко, Juan José Cantero, Sydney I. Glassman, Wael N. Hozzein, Martin Zobel
Software Mentions: 5
Published: over 5 years ago

10.1186/s12911-019-0747-6

Importance of medical data preprocessing in predictive modeling and risk factor discovery for the frailty syndrome
Cited by: 39
Author(s): Andreas Philipp Hassler, Ernestina Menasalvas, Francisco José García‐García, Leocadio Rodríguez‐Mañas, Andreas Holzinger
Software Mentions: 5
Published: over 7 years ago

10.1186/s12862-019-1545-6

Leaps and bounds: geographical and ecological distance constrained the colonisation of the Afrotemperate by Erica
Cited by: 9
Author(s): Michael D. Pirie, Martha Kandziora, Nicolai M. Nürk, Nicholas C Le Maitre, A. Mugrabi de Kuppler, Berit Gehrke, E. G. H. Oliver, Dirk U. Bellstedt
Software Mentions: 5
Published: over 6 years ago

10.3390/ijms21124199

CCR5-Mediated Signaling is Involved in Invasion of Glioblastoma Cells in Its Microenvironment
Cited by: 39
Author(s): Metka Novak, Miha Koprivnikar Krajnc, Barbara Hrastar, Barbara Breznik, Bernarda Majc, Mateja Mlinar, Ana Rotter, Andrej Porčnik, Jernej Mlakar, Katja Stare, Richard G. Pestell, Tamara Lah Turnšek
Software Mentions: 5
Published: about 6 years ago

10.7717/peerj.2038

PhySortR: a fast, flexible tool for sorting phylogenetic trees in R
Cited by: 16
Author(s): Timothy G. Stephens, Debashish Bhattacharya, Mark A. Ragan, Cheong Xin Chan
Software Mentions: 5
Published: about 10 years ago

10.1371/journal.pone.0196987

Diversity and potential activity patterns of planktonic eukaryotic microbes in a mesoeutrophic coastal area (eastern English Channel)
Cited by: 11
Author(s): Sara Rachik, Urania Christaki, Luen Luen Li, Savvas Genitsaris, Elsa Breton, Sébastien Monchy
Software Mentions: 5
Published: about 8 years ago

10.3390/ijms22041778

Association of Maternal Microbiota and Diet in Cord Blood Cytokine and Immunoglobulin Profiles
Cited by: 11
Author(s): Karla Rio-Aigé, Ignasi Azagra-Boronat, Malén Massot-Cladera, Marta Selma‐Royo, Anna Parra-Llorca, Sonia González, Izaskun García-Mantrana, Cristina Castellote, María J. Rodríguez-Lagunas, María Carmen Collado, Francisco J. Pérez-Cano
Software Mentions: 5
Published: over 5 years ago

10.1186/s12890-016-0303-4

The bronchial epithelial cell bacterial microbiome and host response in patients infected with human immunodeficiency virus
Cited by: 6
Author(s): Marc A. Sze, Stella Xu, Janice M. Leung, Emily A. Vucic, Tawimas Shaipanich, Aida Moghadam, Marianne Harris, Silvia Guillemi, Sunita Sinha, Corey Nislow, Darra Murphy, Cameron Hague, Jonathon Leipsic, Stephen Lam, Wan L. Lam, Julio S. G. Montaner, Don D. Sin, S. F. Paul Man
Software Mentions: 5
Published: over 9 years ago

10.1001/jamanetworkopen.2021.6857

Association of In-Ear Device Use With Communication Quality Among Individuals Wearing Personal Protective Equipment in a Simulated Operating Room
Cited by: 5
Author(s): Don Nguyen, Emily Kay‐Rivest, Marc A. Tewfik, Michael P. Hier, Alexandre Lehmann
Software Mentions: 5
Published: about 5 years ago

10.3389/fmicb.2016.01727

Gradual Changes of Gut Microbiota in Weaned Miniature Piglets
Cited by: 123
Author(s): Jun Hu, Yangfan Nie, Jian Wei Chen, Yong Zhang, Zhi‐Chang Wang, Qi-Wen Fan, Xianghua Yan
Software Mentions: 5
Published: over 9 years ago

10.1111/jam.14914

Occurrence of <i>Campylobacter</i> spp. in Swedish calves, common sequence types and antibiotic resistance patterns
Cited by: 7
Author(s): Ingrid Hansson, Lena-Mari Tamminen, Sara Frosth, Lise-Lotte Fernström, Ulf Emanuelson, Sofia Boqvist
Software Mentions: 5
Published: over 5 years ago

10.3390/ani10010154

Investigation of the Defatted Colostrum 1H-NMR Metabolomics Profile of Gilts and Multiparous Sows and Its Relationship with Litter Performance
Cited by: 6
Author(s): Diana Luise, Gianfranco Picone, Agnese Balzani, Francesco Capozzi, Micol Bertocchi, Chiara Salvarani, Paolo Bosi, Sandra Edwards, Paolo Trevisi
Software Mentions: 5
Published: over 6 years ago

10.1186/s13071-016-1584-4

Genetic diversity of two Daphnia-infecting microsporidian parasites, based on sequence variation in the internal transcribed spacer region
Cited by: 9
Author(s): Enrique González-Tortuero, Jakub Rusek, Inbar Maayan, Adam Petrusek, Lubomír Piálek, Stefan Laurent, Justyna Wolinska
Software Mentions: 5
Published: about 10 years ago

10.1155/2019/3865279

Bioinformatic Analysis Reveals an Immune/Inflammatory-Related Risk Signature for Oral Cavity Squamous Cell Carcinoma
Cited by: 4
Author(s): Shan Bai, Ying-Bin Yan, Wei Chen, Ping Zhang, Tong-Mei Zhang, Yuanyuan Tian, Hao Liu
Software Mentions: 5
Published: over 6 years ago

10.3389/fmicb.2020.00704

Effects of Drought-Tolerant Ea-DREB2B Transgenic Sugarcane on Bacterial Communities in Soil
Cited by: 18
Author(s): Xue Zhao, Yuke Jiang, Qi Liu, Hao Yang, Ziting Wang, Muqing Zhang
Software Mentions: 5
Published: about 6 years ago

10.1371/journal.ppat.1007747

A set of Arabidopsis genes involved in the accommodation of the downy mildew pathogen Hyaloperonospora arabidopsidis
Cited by: 13
Author(s): Martina Katharina Ried, Aline Banhara, Fang-Yu Hwu, Andreas Binder, Andrea A. Gust, Caroline Höfle, Ralph Hückelhoven, Thorsten Nürnberger, Martin Parniske
Software Mentions: 5
Published: about 7 years ago

10.3390/microorganisms8060905

First Detection of Paralytic Shellfish Toxins from Alexandrium pacificum above the Regulatory Limit in Blue Mussels (Mytilus galloprovincialis) in New South Wales, Australia
Cited by: 8
Author(s): Abanti Barua, Penelope Ajani, Rendy Ruvindy, H. Farrell, A. Zammit, Steve Brett, David R. Hill, Chowdhury Sarowar, Mona Hoppenrath, Shauna A. Murray
Software Mentions: 5
Published: about 6 years ago

10.7717/peerj.7647

Interspecific variation in the limb long bones among modern rhinoceroses—extent and drivers
Cited by: 25
Author(s): Christophe Mallet, Raphaël Cornette, Guillaume Billet, Alexandra Houssaye
Software Mentions: 5
Published: almost 7 years ago

10.1098/rspb.2019.1664

Kin but less than kind: within-group male relatedness does not increase female fitness in seed beetles
Cited by: 4
Author(s): Elena C. Berg, Martin I. Lind, Shannon Monahan, Sophie Bricout, Alexei A. Maklakov
Software Mentions: 5
Published: almost 7 years ago

10.7554/eLife.44433

The African ape-like foot of Ardipithecus ramidus and its implications for the origin of bipedalism
Cited by: 28
Author(s): Thomas C. Prang
Software Mentions: 5
Published: about 7 years ago

10.1371/journal.pcbi.1005209

BIDS apps: Improving ease of use, accessibility, and reproducibility of neuroimaging data analysis methods
Cited by: 203
Author(s): Krzysztof J. Gorgolewski, Fidel Alfaro-Almagro, Tibor Auer, Pierre Bellec, Mihai Capotă, M. Mallar Chakravarty, Nathan W. Churchill, Alexander L. Cohen, R. Cameron Craddock, Gabriel A. Devenyi, Anders Eklund, Oscar Estéban, Guillaume Flandin, Samik Ghosh, J. Swaroop Guntupalli, Mark Jenkinson, Anisha Keshavan, Gregory Kiar, Franziskus Liem, Pradeep Reddy Raamana, David Raffelt, Christopher J. Steele, Pierre-Olivier Quirion, Robert E. Smith, Stephen C. Strother, Gaël Varoquaux, Yida Wang, Tal Yarkoni, Russell A. Poldrack
Software Mentions: 5
Published: over 9 years ago

10.1098/rspb.2020.1883

Postcopulatory sexual selection and the evolution of shape complexity in the carnivoran baculum
Cited by: 9
Author(s): Charlotte A. Brassey, Julia Behnsen, James Gardiner
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pone.0119609

Behavioural Ecology and Group Cohesion of Juvenile Western Lowland Gorillas (Gorilla g. gorilla) during Rehabilitation in the Batéké Plateaux National Park, Gabon
Cited by: 8
Author(s): Guillaume Le Flohic, Peggy Motsch, Hélène M. De Nys, Simon Childs, Amos Courage, Tony King
Software Mentions: 5
Published: over 11 years ago

10.3390/microorganisms8081152

Population Structure of Non-ST6 Listeria monocytogenes Isolated in the Red Meat and Poultry Value Chain in South Africa
Cited by: 11
Author(s): Itumeleng Matle, Thendo Mafuna, Evelyn Madoroba, Khanyisile R. Mbatha, Kudakwashe Magwedere, Rian Pierneef
Software Mentions: 5
Published: almost 6 years ago

10.3389/fpsyg.2021.667173

Dimensions and Clusters of Aesthetic Emotions: A Semantic Profile Analysis
Cited by: 4
Author(s): Ursula Beermann, Georg Hosoya, Ines Schindler, Klaus R. Scherer, Michael Eid, Valentin Wagner, Winfried Menninghaus
Software Mentions: 5
Published: about 5 years ago

10.1371/journal.pone.0231809

Genetic and demographic vulnerability of adder populations: Results of a genetic study in mainland Britain
Cited by: 3
Author(s): Sarah E. Ball, Nigel Hand, Faye Willman, Chris Durrant, Tobias Uller, Katja Claus, Joachim Mergeay, Dirk Bauwens, Trenton W. J. Garner
Software Mentions: 5
Published: about 6 years ago

10.1098/rspb.2020.2753

Priority effects alter interaction outcomes in a legume–rhizobium mutualism
Cited by: 10
Author(s): Julia A. Boyle, Anna K. Simonsen, Megan E. Frederickson, John R. Stinchcombe
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pone.0236165

Diversity and structure of soil microbiota of the Jinsha earthen relic
Cited by: 4
Author(s): Sheng Yang, Linfeng Wu, Bin Wu, Yizheng Zhang, Haiyan Wang, Xuemei Tan
Software Mentions: 5
Published: almost 6 years ago

10.1073/pnas.2013284118

Anthropogenic climate change is worsening North American pollen seasons
Cited by: 97
Author(s): William R. L. Anderegg, John T. Abatzoglou, Leander D. L. Anderegg, Leonard Bielory, Patrick L. Kinney, Lewis H. Ziska
Software Mentions: 5
Published: over 5 years ago

10.1186/s12859-020-03804-y

simplePHENOTYPES: SIMulation of pleiotropic, linked and epistatic phenotypes
Cited by: 7
Author(s): Samuel B. Fernandes, Alexander E. Lipka
Software Mentions: 5
Published: over 5 years ago

10.1038/s41598-021-97258-8

Novel interferon-sensitive genes unveiled by correlation-driven gene selection and systems biology
Cited by: 3
Author(s): Cristina Cheroni, Lara Manganaro, Lorena Donnici, Valeria Bevilacqua, Raoul J. P. Bonnal, Riccardo Rossi, Raffaele De Francesco
Software Mentions: 5
Published: almost 5 years ago

10.3390/ani11010068

Investigating the Features of PDO Green Hams during Salting: Insights for New Markers and Genomic Regions in Commercial Hybrid Pigs
Cited by: 4
Author(s): Martina Zappaterra, Paolo Zambonelli, C. Schivazappa, Nicoletta Simoncini, R. Virgili, Bruno Stefanon, Roberta Davoli
Software Mentions: 5
Published: over 5 years ago

10.1093/g3journal/jkaa017

AlphaSimR: an R package for breeding program simulations
Cited by: 88
Author(s): R. Chris Gaynor, Gregor Gorjanc, John M. Hickey
Software Mentions: 5
Published: over 5 years ago

10.3390/v11080694

Prediction of the Spatial Origin of Puumala Virus Infections Using L Segment Sequences Derived from a Generic Screening PCR
Cited by: 6
Author(s): Sabrina Weiß, Boris Klempa, Beate Tenner, Detlev H. Krüger, Jörg Hofmann
Software Mentions: 5
Published: almost 7 years ago

10.1038/srep22343

Microspatial variability in community structure and photophysiology of calcified macroalgal microbiomes revealed by coupling of hyperspectral and high-resolution fluorescence imaging
Cited by: 22
Author(s): Rupert Perkins, Christopher Williamson, Juliet Brodie, Laurent Barillé, Patrick Launeau, Johann Lavaud, Marian L. Yallop, Bruno Jesus
Software Mentions: 5
Published: over 10 years ago

10.7717/peerj.11950

Rephine.r: a pipeline for correcting gene calls and clusters to improve phage pangenomes and phylogenies
Cited by: 2
Author(s): Jason W. Shapiro, Catherine Putonti
Software Mentions: 5
Published: almost 5 years ago

10.1038/srep43323

Development of a pipeline for automated, high-throughput analysis of paraspeckle proteins reveals specific roles for importin α proteins
Cited by: 6
Author(s): Andrew T. Major, Yoichi Miyamoto, Camden Lo, David A. Jans, Kate Loveland
Software Mentions: 5
Published: over 9 years ago

10.3389/fmicb.2019.03153

Diversity of Bacterial Community in the Oxygen Minimum Zones of Arabian Sea and Bay of Bengal as Deduced by Illumina Sequencing
Cited by: 33
Author(s): Genevieve L. Fernandes, Belle Damodara Shenoy, Samir Damare
Software Mentions: 5
Published: over 6 years ago

10.1111/pbi.12852

The transcriptome, extracellular proteome and active secretome of agroinfiltrated<i>Nicotiana benthamiana</i>uncover a large, diverse protease repertoire
Cited by: 52
Author(s): Friederike Grosse‐Holz, Steven L. Kelly, Svenja Blaskowski, Farnusch Kaschani, Markus Kaiser, Renier A. L. van der Hoorn
Software Mentions: 5
Published: over 8 years ago

10.1038/s41598-017-07201-z

Different effects of accelerated development and enhanced growth on oxidative stress and telomere shortening in amphibian larvae
Cited by: 66
Author(s): Pablo Burraco, Carmen Díaz‐Paniagua, Iván Gómez-Mestre
Software Mentions: 5
Published: almost 9 years ago

10.7717/peerj.7484

Phylogenomic analyses confirm a novel invasive North American<i>Corbicula</i>(Bivalvia: Cyrenidae) lineage
Cited by: 20
Author(s): Amanda E. Haponski, Diarmaid Ó Foighil
Software Mentions: 5
Published: almost 7 years ago

10.3390/ani11061602

TeamMate: A Longitudinal Study of New Zealand Working Farm Dogs. III. Factors Affecting the Risk of Dogs Being Lost from the Workforce
Cited by: 1
Author(s): Katja Elisabeth Isaksen, Lori Linney, Helen Williamson, Norman Espinosa, Nick J. Cave, Naomi Cogger
Software Mentions: 5
Published: about 5 years ago

10.3390/ani10061097

Map-A-Mole: Greenspace Area Influences the Presence and Abundance of the European Mole Talpa europaea in Urban Habitats
Cited by: 1
Author(s): Mark D. E. Fellowes, Kojo Acquaah-Harrison, Fábio Angeoletto, Jeater Waldemar Maciel Corrêa Santos, Deleon da Silva Leandro, Elise Amador Rocha, Tara J. Pirie, Rebecca L. Thomas
Software Mentions: 5
Published: about 6 years ago

10.1038/s41598-019-40234-0

Randomized Controlled Trial comparing the effectiveness of structured-play (ENGAGE) and behavior management (TRIPLE P) in reducing problem behaviors in preschoolers
Cited by: 9
Author(s): Dione Healey, Matthew Healey
Software Mentions: 5
Published: over 7 years ago

10.1186/s12862-017-1004-1

Physiological mechanisms of adaptive developmental plasticity in Rana temporaria island populations
Cited by: 22
Author(s): Pablo Burraco, Ana Elisa Valdés, Frank Johansson, Iván Gómez-Mestre
Software Mentions: 5
Published: about 9 years ago

10.1523/JNEUROSCI.1634-20.2020

Cell Type-Specific Oxidative Stress Genomic Signatures in the Globus Pallidus of Dopamine-Depleted Mice
Cited by: 12
Author(s): Alyssa J. Lawler, Ashley R. Brown, Rachel S. Bouchard, Noelle Toong, Yeonju Kim, Nitinram Velraj, Grant A Fox, Michael Kleyman, Byungsoo Kang, Aryn H. Gittis, Andreas Pfenning
Software Mentions: 5
Published: over 5 years ago

10.1186/s12864-021-07517-1

Transcriptomic analysis of the trade-off between endurance and burst-performance in the frog Xenopus allofraseri
Cited by: 1
Author(s): Valérie Ducret, Adam Richards, Mathieu Videlier, Thibault Scalvenzi, Karen Moore, Konrad Paszkiewicz, Camille Bonneaud, Nicolas Pollet, Anthony Herrel
Software Mentions: 5
Published: over 5 years ago

10.1186/s13100-019-0190-3

Stowaway miniature inverted repeat transposable elements are important agents driving recent genomic diversity in wild and cultivated carrot
Cited by: 6
Author(s): Alicja Macko-Podgórni, Katarzyna Stelmach, Kornelia Kwolek, Dariusz Grzebelus
Software Mentions: 5
Published: over 6 years ago

10.1186/s12862-016-0758-1

Molecular phylogeny and timing of diversification in Alpine Rhithrogena (Ephemeroptera: Heptageniidae)
Cited by: 15
Author(s): Laurent Vuataz, Sereina Rutschmann, Michael T. Monaghan, Michel Sartori
Software Mentions: 5
Published: almost 10 years ago

10.1371/journal.pone.0067345

Impact of Geography and Climate on the Genetic Differentiation of the Subtropical Pine Pinus yunnanensis
Cited by: 37
Author(s): Baosheng Wang, Jian‐Feng Mao, Zhao Wang, Xiaoru Wang
Software Mentions: 5
Published: about 13 years ago

10.1038/s41598-019-42677-x

Honey bees increase their foraging performance and frequency of pollen trips through experience
Cited by: 43
Author(s): Simon Klein, Cristian Pasquaretta, Xingjian He, Clint Perry, Eirik Søvik, Jean-Marc Devaud, Andrew B. Barron, Mathieu Lihoreau
Software Mentions: 5
Published: about 7 years ago

10.1038/s41598-019-44903-y

Association of antidepressants with brain morphology in early stages of psychosis: an imaging genomics approach
Cited by: 9
Author(s): Oleg Bykowsky, Fabienne Harrisberger, André Schmidt, Renata Smieskova, Daniel J. Hauke, Laura Egloff, Anita Riecher-Rössler, Paolo Fusar‐Poli, Christian G. Huber, Undine E. Lang, Christina Andreou, Stefan Borgwardt
Software Mentions: 5
Published: about 7 years ago

10.1007/s00429-018-1683-4

Inter-individual differences in serotonin and glutamate co-transmission reflect differentiation in context-induced conditioned 50-kHz USVs response after morphine withdrawal
Cited by: 11
Author(s): Adam Hamed, Miron B. Kursa
Software Mentions: 5
Published: about 8 years ago

10.1038/s41598-019-48419-3

Morphological differences between coastal bottlenose dolphin (Tursiops aduncus) populations identified using non-invasive stereo-laser photogrammetry
Cited by: 21
Author(s): Martin van Aswegen, Fredrik Christiansen, J. R. Symons, Janet Mann, Krista Nicholson, Kate R. Sprogis, Lars Bejder
Software Mentions: 5
Published: almost 7 years ago

10.1016/j.jtos.2021.03.010

A single cell atlas of human cornea that defines its development, limbal progenitor cells and their interactions with the immune cells
Cited by: 84
Author(s): Joseph Collin, Rachel Queen, Darin Zerti, Sanja Bojić, Birthe Dorgau, Nicky Moyse, Marina Moya Molina, Chunbo Yang, Sunanda Dey, Gary Reynolds, Rafiqul Hussain, Jonathan Coxhead, Steven Lisgo, Deborah J. Henderson, Agatha Joseph, Paul Rooney, Saurabh Ghosh, Lucy Clarke, Che J. Connon, Muzlifah Haniffa, Francisco C Figueiredo, Lyle Armstrong, Majlinda Lako
Software Mentions: 5
Published: about 5 years ago

10.1038/srep37473

Hydrocarbon degraders establish at the costs of microbial richness, abundance and keystone taxa after crude oil contamination in permafrost environments
Cited by: 55
Author(s): Shuai Yang, Wen Xi, Yulan Shi, Susanne Liebner, Huijun Jin, Amedea Perfumo
Software Mentions: 5
Published: over 9 years ago

10.3399/bjgp21X714245

Influence of polypharmacy on patients with heart failure with preserved ejection fraction: a retrospective analysis on adverse outcomes in the TOPCAT trial
Cited by: 12
Author(s): Yuzhong Wu, Wenzhen Zhu, Xin He, Rui‐De Xue, Weihao Liang, Fang‐Fei Wei, Zexuan Wu, Yuanyuan Zhou, Dexi Wu, Jing He, Yugang Dong, Chen Liu
Software Mentions: 5
Published: over 5 years ago

10.1111/mec.13247

High levels of interspecific gene flow in an endemic cichlid fish adaptive radiation from an extreme lake environment
Cited by: 53
Author(s): Antonia G. P. Ford, Kanchon K. Dasmahapatra, Lukas Rüber, Karim Gharbi, Timothée Cézard, Julia J. Day
Software Mentions: 5
Published: about 11 years ago

10.1038/s41598-020-65579-9

The RNA disruption assay is superior to conventional drug sensitivity assays in detecting cytotoxic drugs
Cited by: 3
Author(s): Jonathan Mapletoft, Renée St-Onge, Baoqing Guo, Phillipe Butler, Twinkle Masilamani, Lavina D'costa, Laura B. Pritzker, Amadeo M. Parissenti
Software Mentions: 5
Published: about 6 years ago

10.1038/s41598-021-98075-9

Distinguishing feature of gut microbiota in Tibetan highland coronary artery disease patients and its link with diet
Cited by: 14
Author(s): Yu-Lan Ma, Lulu Zhu, Zhuo Ma, Zhong-Shan Gao, Yumiao Wei, Youlu Shen, Lin Liu, Xingli Liu, Ming Ren
Software Mentions: 5
Published: almost 5 years ago

10.1038/s41598-020-68020-3

Human-like maternal left-cradling bias in monkeys is altered by social pressure
Cited by: 18
Author(s): Grégoire Boulinguez-Ambroise, Emmanuelle Pouydebat, Éloïse Disarbois, Adrien Meguerditchian
Software Mentions: 5
Published: about 6 years ago

10.1038/s41598-020-67774-0

Lifestyle preferences drive the structure and diversity of bacterial and archaeal communities in a small riverine reservoir
Cited by: 7
Author(s): Carles M. Borrego, Sergi Sabater, Lorenzo Proia
Software Mentions: 5
Published: about 6 years ago

10.1038/s41598-020-70274-w

Background choice and immobility as context dependent tadpole responses to perceived predation risk
Cited by: 6
Author(s): Paula Cabral Eterovick, Jéssica Stephanie Kloh, Cleber Cunha Figueredo, Pedro Igor Macário Viana, Marcella Junqueira Goulart, David Travassos Milan, Melissa Bravo Fonseca, Ítalo Moreira Martins, Luan Tavares Pinheiro, Rúbia Praxedes Quintão, Thais Kelly Fagundes Melo, Rodolfo Assis Magalhães, Caio Motta Campos, Vanessa Cristina Monteiro Ferreira, Ana Laura de Oliveira, Miguel Vences
Software Mentions: 5
Published: almost 6 years ago

10.1002/ece3.1274

A phylogenetic analysis of the British flora sheds light on the evolutionary and ecological factors driving plant invasions
Cited by: 12
Author(s): Jun Ying Lim, M. J. Crawley, Natasha de Vere, Tim C. G. Rich, Vincent Savolainen
Software Mentions: 5
Published: over 11 years ago

10.1186/s13007-021-00796-5

Improving the estimation of alpine grassland fractional vegetation cover using optimized algorithms and multi-dimensional features
Cited by: 12
Author(s): Xingchen Lin, Jianjun Chen, Peiqing Lou, Shuai Yi, Yu Qin, Haotian You, Xiaofei Han
Software Mentions: 5
Published: almost 5 years ago

10.1186/s13321-020-00421-y

ADMET evaluation in drug discovery. 20. Prediction of breast cancer resistance protein inhibition through machine learning
Cited by: 38
Author(s): Dejun Jiang, Tailong Lei, Zhe Wang, Chao Shen, Dong‐Sheng Cao, Tingjun Hou
Software Mentions: 5
Published: over 6 years ago

10.3390/jcm10102159

Adverse Life Trajectories Are a Risk Factor for SARS-CoV-2 IgA Seropositivity
Cited by: 0
Author(s): Cyrielle Holuka, Chantal J. Snoeck, Sophie B. Mériaux, Markus Ollert, Rejko Krüger, Jonathan D. Turner
Software Mentions: 5
Published: about 5 years ago

10.1186/s13099-019-0312-y

Differential genetic and functional background in inflammatory bowel disease phenotypes of a Greek population: a systems bioinformatics approach
Cited by: 11
Author(s): Maria Gazouli, Nikolas Dovrolis, André Franke, George M. Spyrou, Leonardo Antonio Sechi, George Kolios
Software Mentions: 5
Published: about 7 years ago

10.3390/microorganisms9061291

Structural and Functional Impacts of Microbiota on Pyropia yezoensis and Surrounding Seawater in Cultivation Farms along Coastal Areas of the Yellow Sea
Cited by: 8
Author(s): Arsalan Ahmed, Anam Khurshid, Xiufeng Tang, Junhao Wang, Tehsin Ullah Khan, Yunxiang Mao
Software Mentions: 5
Published: about 5 years ago

10.1155/2015/623619

Combined Methods for Diabetic Retinopathy Screening, Using Retina Photographs and Tear Fluid Proteomics Biomarkers
Cited by: 34
Author(s): Zsuzsa Török, Tünde Pető, Éva Csősz, Edit Tukacs, Ágnes Molnár, András Berta, József Tözsér, András Hajdú, Valéria Nagy, Bálint Domokos, Adrienne Csutak
Software Mentions: 5
Published: over 11 years ago

10.1186/s12862-021-01802-z

Urinary creatinine varies with microenvironment and sex in hibernating Greater Horseshoe bats (Rhinolophus ferrumequinum) in Korea
Cited by: 0
Author(s): Heungjin Ryu, Kodzue Kinoshita, Sungbae Joo, Sun-Sook Kim
Software Mentions: 5
Published: about 5 years ago

10.1093/molbev/msw285

Rapid expansion of immune-related gene families in the house fly, <i>Musca domestica</i>
Cited by: 23
Author(s): Timothy B. Sackton, Brian P. Lazzaro, Andrew G. Clark
Software Mentions: 5
Published: over 9 years ago

10.1371/journal.pone.0100052

Mining Gene Expression Data of Multiple Sclerosis
Cited by: 20
Author(s): Pi Guo, Qin Zhang, Zhenli Zhu, Zhengliang Huang, Ké Li
Software Mentions: 5
Published: about 12 years ago

10.1038/s41598-017-15137-7

Development of multivariable models to predict change in Body Mass Index within a clinical trial population of psychotic individuals
Cited by: 13
Author(s): Rebecca Harrison, Fiona Gaughran, Robin M. Murray, Sang Hyuck Lee, Jose Paya Cano, David Dempster, Charles Curtis, Danai Dima, Hamel Patel, Simone de Jong, Gerome Breen
Software Mentions: 5
Published: over 8 years ago

10.1038/s41598-017-18321-x

Clay content and pH: soil characteristic associations with the persistent presence of chronic wasting disease in northern Illinois
Cited by: 16
Author(s): Sheena J. Dorak, Michelle L. Green, Michelle M. Wander, Marilyn O. Ruiz, Michael Buhnerkempe, Ting Tian, J. Novakofski, Nohra E. Mateus‐Pinilla
Software Mentions: 5
Published: over 8 years ago

10.1371/journal.pone.0252025

Prediction of preterm birth in nulliparous women using logistic regression and machine learning
Cited by: 14
Author(s): Reza Arabi Belaghi, Joseph Beyene, Sarah D. McDonald
Software Mentions: 5
Published: about 5 years ago

10.1038/s41598-018-30236-9

Machine learning for fast identification of bacteraemia in SIRS patients treated on standard care wards: a cohort study
Cited by: 30
Author(s): Franz Ratzinger, Helmuth Haslacher, Thomas Perkmann, Matilde Pinzan, Philip Anner, Athanasios Makristathis, Heinz Burgmann, Georg Heinze, Georg Dorffner
Software Mentions: 5
Published: almost 8 years ago

10.1371/journal.pone.0236874

What’s all that racket! Soundscapes, phenology, and biodiversity in estuaries
Cited by: 10
Author(s): Agnieszka Monczak, Bradshaw McKinney, Claire Mueller, Eric W. Montie
Software Mentions: 5
Published: almost 6 years ago

10.1186/s40168-017-0334-y

Enrichment of beneficial bacteria in the skin microbiota of bats persisting with white-nose syndrome
Cited by: 144
Author(s): Virginie Lemieux-Labonté, Anouk Simard, Craig K. R. Willis, François‐Joseph Lapointe
Software Mentions: 5
Published: almost 9 years ago

10.1590/0037-8682-0470-2019

Evaluation of genome similarities using a wavelet-domain approach
Cited by: 2
Author(s): Leila Maria Ferreira, Thelma Sáfadi, Juliano Lino Ferreira
Software Mentions: 5
Published: over 6 years ago

10.1038/s41598-019-53451-4

Machine Learning Approach for Prescriptive Plant Breeding
Cited by: 51
Author(s): Kyle A. Parmley, R. A. Higgins, Baskar Ganapathysubramanian, Soumik Sarkar, Asheesh K. Singh
Software Mentions: 5
Published: over 6 years ago

10.1371/journal.pone.0162377

Genetic Diversity and Population Structure of Mesoamerican Jaguars (Panthera onca): Implications for Conservation and Management
Cited by: 42
Author(s): Claudia Wultsch, Anthony Caragiulo, Isabela Dias-Freedman, Howard Quigley, Salisa Rabinowitz, George Amato
Software Mentions: 5
Published: over 9 years ago

10.1038/s41598-020-64829-0

Variable selection for inferential models with relatively high-dimensional data: Between method heterogeneity and covariate stability as adjuncts to robust selection
Cited by: 15
Author(s): Eliana Martins Lima, Peter N. Davies, Jasmeet Kaler, Fiona Lovatt, Martin J. Green
Software Mentions: 5
Published: about 6 years ago

10.1371/journal.pone.0175957

RAPIDSNPs: A new computational pipeline for rapidly identifying key genetic variants reveals previously unidentified SNPs that are significantly associated with individual platelet responses
Cited by: 3
Author(s): Bajuna R. Salehe, Chris I. Jones, Giuseppe Di Fatta, Liam J. McGuffin
Software Mentions: 5
Published: about 9 years ago

10.1038/s41598-020-71176-7

Chemical signatures of femoral pore secretions in two syntopic but reproductively isolated species of Galápagos land iguanas (Conolophus marthae and C. subcristatus)
Cited by: 4
Author(s): Giuliano Colosimo, Gabriele Di Marco, Alessia D’Agostino, Angelo Gismondi, Carlos Vera, Glenn P. Gerber, Michele Scardi, Antonella Canini, Gabriele Gentile
Software Mentions: 5
Published: almost 6 years ago

10.1038/s41598-020-77846-w

Differential proteomic analysis by SWATH-MS unravels the most dominant mechanisms underlying yeast adaptation to non-optimal temperatures under anaerobic conditions
Cited by: 20
Author(s): Tânia Pinheiro, Ka Ying Florence Lip, Estéfani García‐Ríos, Amparo Querol, J. A. Teixeira, Walter van Gulik, José Manuel Guillamón, Lucı́lia Domingues
Software Mentions: 5
Published: over 5 years ago

10.1186/s40168-021-01102-0

Candidate probiotic Lactiplantibacillus plantarum HNU082 rapidly and convergently evolves within human, mice, and zebrafish gut but differentially influences the resident microbiome
Cited by: 22
Author(s): Shi Huang, Shuaiming Jiang, Dongxue Huo, Celeste Allaband, Mehrbod Estaki, Victor Cantu, Pedro Belda-Ferre, Yoshiki Vázquez-Baeza, Qiyun Zhu, Chenchen Ma, Congfa Li, Amir Zarrinpar, Yang‐Yu Liu, Rob Knight, Jiachao Zhang
Software Mentions: 5
Published: about 5 years ago

10.3390/v13020291

Metatranscriptome Analysis of Sympatric Bee Species Identifies Bee Virus Variants and a New Virus, Andrena-Associated Bee Virus-1
Cited by: 12
Author(s): Katie F. Daughenbaugh, Idan Kahnonitch, Charles C. Carey, Alexander J. McMenamin, Tanner Wiegand, Tal Erez, Naama Arkin, Brian T. Ross, Blake Wiedenheft, Asaf Sadeh, Nor Chejanovsky, Yael Mandelik, Michelle L. Flenniken
Software Mentions: 5
Published: over 5 years ago

10.1038/s41598-020-63275-2

Modulation of stress and immune response by Amblyomin-X results in tumor cell death in a horse melanoma model
Cited by: 9
Author(s): Flávio Lichtenstein, Asif Iqbal, Sonia Elisabete Alves de Lima Will, Rosemary Viola Bösch, Carlos DeOcesano-Pereira, Maurício Barbugiani Goldfeder, Roger Chammas, Carlos Eduardo Madureira Trufen, Kátia L.P. Morais, Jean Gabriel de Souza, Renato José Mendonça Natalino, Inácio L.M. Junqueira-de-Azevedo, Milton Yutaka Nishiyama-Jr, Úrsula Castro de Oliveira, F Alves, Jaqueline Mayara Araujo, Aline Ramos Maia Lobba, Ana Marisa Chudzinski‐Tavassi
Software Mentions: 5
Published: about 6 years ago

10.1111/eva.13182

Host evolutionary relationships explain tree mortality caused by a generalist pest–pathogen complex
Cited by: 8
Author(s): Shannon C. Lynch, Akif Eskalen, Gregory S. Gilbert
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pone.0208272

Quality and quantity of leaf litter: Both are important for feeding preferences and growth of an aquatic shredder
Cited by: 16
Author(s): Rebeca Arias-Real, M. Menéndez, Meritxell Abril, Francesc Oliva, Isabel Muñoz
Software Mentions: 5
Published: over 7 years ago

10.3390/foods10061431

Synergistic Effects of the Jackfruit Seed Sourced Resistant Starch and Bifidobacterium pseudolongum subsp. globosum on Suppression of Hyperlipidemia in Mice
Cited by: 8
Author(s): Zhen Zeng, Yuanyuan Wang, Yanjun Zhang, Kaining Chen, Haibo Chang, Chenchen Ma, Shuaiming Jiang, Dongxue Huo, Wenjun Liu, Rajesh Jha, Jiachao Zhang
Software Mentions: 5
Published: about 5 years ago

10.1038/srep16971

Combined Mapping of Multiple clUsteriNg ALgorithms (COMMUNAL): A Robust Method for Selection of Cluster Number, K
Cited by: 15
Author(s): Timothy E. Sweeney, Albert C. Chen, Olivier Gevaert
Software Mentions: 5
Published: over 10 years ago

10.1002/ece3.7952

Functional diversity of avian communities increases with canopy height: From individual behavior to continental‐scale patterns
Cited by: 5
Author(s): Vladimír Remeš, Eva Remešová, Nicholas R. Friedman, Beata Matysioková, Lucia Rubáčová
Software Mentions: 5
Published: almost 5 years ago

10.1016/j.evolhumbehav.2018.11.006

Common marmosets are sensitive to simple dependencies at variable distances in an artificial grammar
Cited by: 11
Author(s): Stephan A. Reber, Vedrana Šlipogor, Jinook Oh, Andrea Ravignani, Marisa Hoeschele, Thomas Bugnyar, W. Tecumseh Fitch
Software Mentions: 5
Published: over 7 years ago

10.1128/mBio.02882-20

Comprehensive Genomic Investigation of Adaptive Mutations Driving the Low-Level Oxacillin Resistance Phenotype in Staphylococcus aureus
Cited by: 23
Author(s): Stefano Giulieri, Romain Guérillot, Jason C Kwong, Ian R. Monk, Ashleigh S Hayes, Diane Daniel, Sarah L. Baines, Norelle L Sherry, Natasha E Holmes, Peter Ward, Wei Gao, Torsten Seemann, Timothy P. Stinear, Benjamin P Howden
Software Mentions: 5
Published: over 5 years ago

10.1128/mSphere.00534-20

The Fungal Microbiome Is an Important Component of Vineyard Ecosystems and Correlates with Regional Distinctiveness of Wine
Cited by: 47
Author(s): Di Liu, Qinglin Chen, Pangzhen Zhang, Deli Chen, Kate Howell
Software Mentions: 5
Published: almost 6 years ago

10.1007/s00027-020-0700-x

Bacterial community composition and function along spatiotemporal connectivity gradients in the Danube floodplain (Vienna, Austria)
Cited by: 15
Author(s): Magdalena Mayr, Katharina Besemer, Anna Sieczko, Katalin Demeter, Peter Peduzzi
Software Mentions: 5
Published: over 6 years ago