Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: pypi: umis

https://packages.ecosyste.ms/registries/pypi.org/packages/umis

Package for estimating UMI counts in Transcript Tag Counting data.
8 versions
Latest release: over 5 years ago
61 downloads last month

Papers Mentioning umis 5

scPipe: A flexible R/Bioconductor preprocessing pipeline for single-cell RNA-sequencing data
Cited by: 92
Author(s): Tian Li, Shian Su, Xueyi Dong, Daniela Amann‐Zalcenstein, Christine Biben, Azadeh Seidi, Douglas J. Hilton, Shalin H. Naik, Matthew E. Ritchie
Software Mentions: 21
Published: over 6 years ago

10.1371/journal.pcbi.1006245

Exploring the single-cell RNA-seq analysis landscape with the scRNA-tools database
Cited by: 213
Author(s): Luke Zappia, Belinda Phipson, Alicia Oshlack
Software Mentions: 17
Published: over 6 years ago

10.1186/s12859-019-2797-2

scruff: an R/Bioconductor package for preprocessing single-cell RNA-sequencing data
Cited by: 19
Author(s): Zhe Wang, Junming Hu, W. Evan Johnson, Joshua D. Campbell
Software Mentions: 10
Published: over 5 years ago

10.7554/eLife.54818

A single-cell survey of Drosophila blood
Cited by: 109
Author(s): Sudhir Gopal Tattikota, Bumsik Cho, Yifang Liu, Yanhui Hu, Víctor Barrera, Michael J. Steinbaugh, Sangtae Yoon, Aram Comjean, Fangge Li, Franz Dervis, Ruei-Jiun Hung, Jin Wu Nam, Shannan Ho Sui, Jiwon Shim, Norbert Perrimon
Software Mentions: 8
Published: over 4 years ago

10.7717/peerj.8275

Algorithms for efficiently collapsing reads with Unique Molecular Identifiers
Cited by: 9
Author(s): Daniel Liu
Software Mentions: 3
Published: almost 5 years ago