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An open API service providing mapping between scientific papers and software projects that are mentioned in them.

Projects: pypi: umis

https://packages.ecosyste.ms/registries/pypi.org/packages/umis

Package for estimating UMI counts in Transcript Tag Counting data.
8 versions
Latest release: about 6 years ago
61 downloads last month

Enhanced Analysis
Educational Contributors: [email protected] [email protected]
Repository Activity:
Repository Owner: Valentine Svensson (user)
Science Score: 100/100
Starting Score: 100 points
Bonuses:
  • +40 Educational commit emails
    2 contributors with educational email addresses
Penalties:
  • -10 PyPI ecosystem
    General-purpose ecosystem
  • -15 No science keywords
    No scientific terms found in keywords/classifiers
  • -10 No science terms in description
    No scientific terms found in description
Very Likely Science (100)

Papers Mentioning umis 5

10.1371/journal.pcbi.1006361
scPipe: A flexible R/Bioconductor preprocessing pipeline for single-cell RNA-sequencing data
Cited by: 92
Author(s): Tian Li, Shian Su, Xueyi Dong, Daniela Amann‐Zalcenstein, Christine Biben, Azadeh Seidi, Douglas J. Hilton, Shalin H. Naik, Matthew E. Ritchie
Software Mentions: 21
Published: almost 7 years ago
10.1371/journal.pcbi.1006245
Exploring the single-cell RNA-seq analysis landscape with the scRNA-tools database
Cited by: 213
Author(s): Luke Zappia, Belinda Phipson, Alicia Oshlack
Software Mentions: 17
Published: about 7 years ago
10.1186/s12859-019-2797-2
scruff: an R/Bioconductor package for preprocessing single-cell RNA-sequencing data
Cited by: 19
Author(s): Zhe Wang, Junming Hu, W. Evan Johnson, Joshua D. Campbell
Software Mentions: 10
Published: about 6 years ago
10.7554/eLife.54818
A single-cell survey of Drosophila blood
Cited by: 109
Author(s): Sudhir Gopal Tattikota, Bumsik Cho, Yifang Liu, Yanhui Hu, Víctor Barrera, Michael J. Steinbaugh, Sangtae Yoon, Aram Comjean, Fangge Li, Franz Dervis, Ruei-Jiun Hung, Jin Wu Nam, Shannan Ho Sui, Jiwon Shim, Norbert Perrimon
Software Mentions: 8
Published: about 5 years ago
10.7717/peerj.8275
Algorithms for efficiently collapsing reads with Unique Molecular Identifiers
Cited by: 9
Author(s): Daniel Liu
Software Mentions: 3
Published: over 5 years ago