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Papers: 10.1186/s12859-019-2797-2

https://doi.org/10.1186/s12859-019-2797-2

scruff: an R/Bioconductor package for preprocessing single-cell RNA-sequencing data

Cited by: 19
Author(s): Zhe Wang, Junming Hu, W. Evan Johnson, Joshua D. Campbell
Published: about 6 years ago

Software Mentions 10

bioconductor: BiocParallel
Bioconductor facilities for parallel evaluation
Papers that mentioned: 30
Very Likely Science (100)
bioconductor: celda
CEllular Latent Dirichlet Allocation
Papers that mentioned: 1
Very Likely Science (100)
bioconductor: ggbio
Visualization tools for genomic data
Papers that mentioned: 53
Very Likely Science (100)
bioconductor: Rsubread
Mapping, quantification and variant analysis of sequencing data
Papers that mentioned: 331
Very Likely Science (100)
bioconductor: scPipe
Pipeline for single cell multi-omic data pre-processing
Papers that mentioned: 7
Very Likely Science (100)
bioconductor: scruff
Single Cell RNA-Seq UMI Filtering Facilitator (scruff)
Papers that mentioned: 1
Very Likely Science (100)
bioconductor: SingleCellExperiment
S4 Classes for Single Cell Data
Papers that mentioned: 36
Very Likely Science (75)
bioconductor: singleCellTK
Comprehensive and Interactive Analysis of Single Cell RNA-Seq Data
Papers that mentioned: 2
Very Likely Science (100)
cran: STAR
Spike Train Analysis with R
Papers that mentioned: 5,759
Very Likely Science (100)
pypi: umis
Package for estimating UMI counts in Transcript Tag Counting data.
Papers that mentioned: 5
Very Likely Science (100)