Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Papers: 10.1186/s12859-019-2797-2
https://doi.org/10.1186/s12859-019-2797-2
scruff: an R/Bioconductor package for preprocessing single-cell RNA-sequencing data
Cited by: 19
Author(s): Zhe Wang, Junming Hu, W. Evan Johnson, Joshua D. Campbell
Published: over 5 years ago
Software Mentions 10
bioconductor: BiocParallel
Bioconductor facilities for parallel evaluationPapers that mentioned: 30
bioconductor: Rsubread
Mapping, quantification and variant analysis of sequencing dataPapers that mentioned: 331
bioconductor: scPipe
Pipeline for single cell multi-omic data pre-processingPapers that mentioned: 7
bioconductor: scruff
Single Cell RNA-Seq UMI Filtering Facilitator (scruff)Papers that mentioned: 1
bioconductor: singleCellTK
Comprehensive and Interactive Analysis of Single Cell RNA-Seq DataPapers that mentioned: 2
pypi: umis
Package for estimating UMI counts in Transcript Tag Counting data.Papers that mentioned: 5