pypi: stats | Projects | Ecosyste.ms: Papers

10.1371/journal.pone.0181109

Hypoxia tolerance and responses to hypoxic stress during heart and skeletal muscle inflammation in Atlantic salmon (Salmo salar)
Cited by: 33
Author(s): Morten Lund, Maria K. Dahle, Gerrit Timmerhaus, Marta Alarcón, Mark D. Powell, Vidar Aspehaug, Espen Rimstad, Sven Martin Jørgensen
Software Mentions: 5
Published: over 7 years ago

10.3390/insects12040298

Effectiveness of Push–Pull Systems to Fall Armyworm (Spodoptera frugiperda) Management in Maize Crops in Morelos, Mexico
Cited by: 4
Author(s): Ouorou Ganni Mariel Guera, Federico Castrejón-Ayala, Norma Robledo, Alfredo Jiménez‐Pérez, Georgina Sánchez-Rivera, Lilia Salazar-Marcial, Hilda Elizabet Flores Moctezuma
Software Mentions: 5
Published: over 3 years ago

10.7717/peerj.9722

Population genomics reveals a mismatch between management and biological units in green abalone (<i>Haliotis fulgens</i>)
Cited by: 9
Author(s): Paulina Mejía-Ruíz, Ricardo Pérez‐Enríquez, Jorge Alberto Mares-Mayagoitia, Fausto Valenzuela‐Quiñonez
Software Mentions: 5
Published: over 4 years ago

10.1186/1471-2229-8-99

Regulon organization of Arabidopsis
Cited by: 95
Author(s): Wieslawa I. Mentzen, Eve Syrkin Wurtele
Software Mentions: 5
Published: almost 17 years ago

10.1093/conphys/coab054

Differential sensitivity to warming and hypoxia during development and long-term effects of developmental exposure in early life stage Chinook salmon
Cited by: 9
Author(s): Annelise M Del Rio, Gabriella N M Mukai, Benjamin T. Martin, Rachel C. Johnson, Nann A. Fangue, Joshua A. Israel, Anne E. Todgham
Software Mentions: 5
Published: almost 4 years ago

10.3390/insects11060326

Evolutionary Patterns of Sex-Biased Genes in Three Species of Haplodiploid Insects
Cited by: 0
Author(s): Yujun Wang, Hua-Ling Wang, Xiaowei Wang, Shu‐Sheng Liu
Software Mentions: 5
Published: over 4 years ago

10.1002/ieam.4350

Glyphosate Toxicity to Native Nontarget Macrophytes Following Three Different Routes of Incidental Exposure
Cited by: 17
Author(s): Verena Sesin, Christina M. Davy, Kenneth N. Stevens, Rebekah Hamp, Joanna R. Freeland
Software Mentions: 5
Published: about 4 years ago

10.1002/ece3.5422

Estimating seed dispersal distance: A comparison of methods using animal movement and plant genetic data on two primate‐dispersed Neotropical plant species
Cited by: 10
Author(s): Tiziana A. Gelmi‐Candusso, Ronald Bialozyt, Darja Slana, Ricardo Zárate Gómez, Eckhard W. Heymann, Katrin Heer
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pone.0151650

Conservation of Pollinators in Traditional Agricultural Landscapes – New Challenges in Transylvania (Romania) Posed by EU Accession and Recommendations for Future Research
Cited by: 32
Author(s): Anikó Kovács‐Hostyánszki, Rita Földesi, Edina Mózes, Ádám Szirák, Joern Fischer, Jan Hanspach, András Báldi
Software Mentions: 5
Published: over 8 years ago

10.1016/j.csbj.2021.07.020

MyoData: An expression knowledgebase at single cell/nucleus level for the discovery of coding-noncoding RNA functional interactions in skeletal muscle
Cited by: 3
Author(s): Davide Corso, Francesco Chemello, Enrico Alessio, Ilenia Urso, Giulia Ferrarese, Martina Bazzega, Chiara Romualdi, Gerolamo Lanfranchi, Gabriele Sales, Stefano Cagnin
Software Mentions: 5
Published: almost 4 years ago

10.1186/s12979-020-00182-0

Effect of aging on the transcriptomic changes associated with the expression of the HERV-K (HML-2) provirus at 1q22
Cited by: 11
Author(s): Arttu Autio, Tapio Nevalainen, Binisha H. Mishra, Marja Jylhä, Heini Flinck, Mikko Hurme
Software Mentions: 5
Published: over 4 years ago

10.1242/dev.160614

Distinct prophase arrest mechanisms in human male meiosis
Cited by: 24
Author(s): Sabrina Z. Jan, Aldo Jongejan, Cindy M. Korver, Saskia K.M. van Daalen, Ans M.M. van Pelt, Sjoerd Repping, Geert Hamer
Software Mentions: 5
Published: almost 7 years ago

10.1186/s12866-018-1221-9

Oil type and temperature dependent biodegradation dynamics - Combining chemical and microbial community data through multivariate analysis
Cited by: 50
Author(s): Deni Ribičić, Kelly M. McFarlin, Roman Netzer, Odd Gunnar Brakstad, Anderson M. Winkler, Mimmi Throne-Holst, Trond Røvik Størseth
Software Mentions: 5
Published: over 6 years ago

10.1186/s12866-020-01884-7

Diversity and distribution of marine heterotrophic bacteria from a large culture collection
Cited by: 24
Author(s): Isabel Sanz-Sáez, Guillem Salazar, Pablo Sánchez, Elena Lara, Marta Royo-Llonch, Elisabet L. Sà, Teresa Lucena, María J. Pujalte, Dolors Vaqué, Carlos M. Duarte, Josep M. Gasol, Carlos Pedrós‐Alió, Olga Sánchez, Silvia G. Acinas
Software Mentions: 5
Published: over 4 years ago

10.1186/s13071-021-04984-z

Determinants of Aedes mosquito density as an indicator of arbovirus transmission risk in three sites affected by co-circulation of globally spreading arboviruses in Colombia, Ecuador and Argentina
Cited by: 5
Author(s): Benoit Talbot, Beate Sander, Varsovia Cevallos, Camila González, Denisse Benítez, Claudio Carissimo, María Cristina Ferro, Neris Javier Gauto, Sergio Litwiñiuk, Karen M. Lopez, Mario I. Ortiz, Patricio Ponce, Stephany D. Villota, Fabian Zelaya, Mauricio Espinel, Jianhong Wu, Marcos Mateo Miretti, Manisha A. Kulkarni
Software Mentions: 5
Published: about 3 years ago

10.1371/journal.pone.0167570

GWRM: An R Package for Identifying Sources of Variation in Overdispersed Count Data
Cited by: 4
Author(s): Silverio Vílchez-López, A. J. Sáez-Castillo, María José Olmo-Jiménez
Software Mentions: 5
Published: almost 8 years ago

10.3390/healthcare9060710

The Prediction Model of Medical Expenditure Appling Machine Learning Algorithm in CABG Patients
Cited by: 4
Author(s): Yen-Chun Huang, Shao‐Jung Li, Mingchih Chen, Tian–Shyug Lee
Software Mentions: 5
Published: over 3 years ago

10.1186/s13071-020-04221-z

Measuring mosquito control: adult-mosquito catches vs egg-trap data as endpoints of a cluster-randomized controlled trial of mosquito-disseminated pyriproxyfen
Cited by: 9
Author(s): Klauss Kleydmann Sabino Garcia, Hanid S. Versiani, Taís O. Araújo, João Paulo Araújo da Conceição, Marcos Takashi Obara, Walter Massa Ramalho, Thaís Tâmara Castro Minuzzi-Souza, Gustavo D. Gomes, Elisa Neves Vianna, Renata Velôzo Timbó, Vinicios G. C. Barbosa, Maridalva S. P. Rezende, Luciana P. F. Martins, Glauco O. Macedo, Bruno Lopes Carvalho, Israel Martins Moreira, Lorrainy A. Bartasson, Nadjar Nitz, Sérgio Luíz Bessa Luz, Rodrigo Gurgel-Gonçalves, Fernando Abad‐Franch
Software Mentions: 5
Published: over 4 years ago

10.1093/gigascience/giaa125

Localized effect of treated wastewater effluent on the resistome of an urban watershed
Cited by: 17
Author(s): Christopher N Thornton, Windy Tanner, James VanDerslice, William J. Brazelton
Software Mentions: 5
Published: about 4 years ago

10.1186/s12866-020-01795-7

Optimizing 16S rRNA gene profile analysis from low biomass nasopharyngeal and induced sputum specimens
Cited by: 15
Author(s): Shantelle Claassen-Weitz, Sugnet Gardner-Lubbe, Kilaza Samson Mwaikono, Elloise du Toit, Heather J. Zar, Mark P. Nicol
Software Mentions: 5
Published: over 4 years ago

10.1038/s42003-021-01985-7

Global climate and nutrient controls of photosynthetic capacity
Cited by: 18
Author(s): Yunke Peng, Keith J. Bloomfield, Lucas A. Cernusak, Tomas F. Domingues, Iain Colin Prentice
Software Mentions: 5
Published: over 3 years ago

10.1186/s42523-020-00040-w

The microbiome of captive hamadryas baboons
Cited by: 6
Author(s): Xuanji Li, Urvish Trivedi, Asker Brejnrod, Gisle Vestergaard, Martin Steen Mortensen, Mads F. Bertelsen, Søren J. Sørensen
Software Mentions: 5
Published: over 4 years ago

10.1016/j.ctro.2020.04.004

[18F]-HX4 PET/CT hypoxia in patients with squamous cell carcinoma of the head and neck treated with chemoradiotherapy: Prognostic results from two prospective trials
Cited by: 12
Author(s): Sebastian Sanduleanu, Olga Hamming‐Vrieze, Frederik Wesseling, Aniek J.G. Even, Frank Hoebers, Ann Hoeben, Wouter V. Vogel, Margot E.T. Tesselaar, Daniel Parvin, Harry Bartelink, Philippe Lambin
Software Mentions: 5
Published: over 4 years ago

10.3390/v12121424

NCBI’s Virus Discovery Codeathon: Building “FIVE” —The Federated Index of Viral Experiments API Index
Cited by: 3
Author(s): Joan Martí-Carreras, Alejandro Rafael Gener, Sierra Miller, Anderson F. Brito, Christiam Camacho, Ryan Connor, Ward Deboutte, Cody Glickman, David M. Kristensen, Wynn K. Meyer, Sejal Modha, Alexis L. Norris, Surya Saha, Anna K. Belford, Evan Biederstedt, J. Rodney Brister, Jan P. Buchmann, Nicholas P. Cooley, Robert A. Edwards, Kiran Javkar, Michael Muchow, Harihara Subrahmaniam Muralidharan, Charles Pepe-Ranney, Nidhi Shah, Migun Shakya, Michael J. Tisza, Benjamin J. Tully, Bert Vanmechelen, Valerie Christine Virta, Jake L. Weissman, Vadim Zalunin, Alexandre Efremov, Ben Busby
Software Mentions: 5
Published: almost 4 years ago

10.3390/v12111204

Seasonal Regime Shift in the Viral Communities of a Permafrost Thaw Lake
Cited by: 4
Author(s): Catherine Girard, Valérie Langlois, Adrien Vigneron, Warwick F. Vincent, Alexander I. Culley
Software Mentions: 5
Published: about 4 years ago

10.1371/journal.pone.0256568

The absence of fans removes the home advantage associated with penalties called by National Hockey League referees
Cited by: 6
Author(s): Joël Guérette, Caroline Blais, Daniel Fiset
Software Mentions: 5
Published: over 3 years ago

10.1038/s41438-021-00465-7

Genetic characterization of an almond germplasm collection and volatilome profiling of raw and roasted kernels
Cited by: 10
Author(s): Mario Di Guardo, Brian Farneti, Iuliia Khomenko, Giulia Modica, A. Mosca, Gaetano Distefano, Luca Bianco, Michela Troggio, Francesco Sottile, Stefano La Malfa, Franco Biasioli, Alessandra Gentile
Software Mentions: 5
Published: almost 4 years ago

10.1371/journal.pone.0166969

Hybrid Origins of Citrus Varieties Inferred from DNA Marker Analysis of Nuclear and Organelle Genomes
Cited by: 72
Author(s): Tokurou Shimizu, Akira Kitajima, Kenichi Nonaka, Terutaka Yoshioka, Satoshi Ohta, Shingo Goto, Atsushi Toyoda, Asao Fujiyama, Takako Mochizuki, Hideki Nagasaki, Eli Kaminuma, Yasukazu Nakamura
Software Mentions: 5
Published: almost 8 years ago

10.1038/s42003-021-01690-5

Development of a robust protocol for the characterization of the pulmonary microbiota
Cited by: 6
Author(s): Nathan Dumont-Leblond, Marc Veillette, Christine Racine, Philippe Joubert, Caroline Duchaine
Software Mentions: 5
Published: almost 4 years ago

10.3389/fgene.2021.648701

Multiomics Analysis Reveals Molecular Abnormalities in Granulosa Cells of Women With Polycystic Ovary Syndrome
Cited by: 14
Author(s): Ru-Song Zhao, Yonghui Jiang, Shigang Zhao, Han Zhao
Software Mentions: 5
Published: over 3 years ago

10.3758/s13414-019-01674-y

Goal-directed unequal attention allocation during multiple object tracking
Cited by: 12
Author(s): Emily M. Crowe, Christina J. Howard, Angela Attwood, Christopher Kent
Software Mentions: 5
Published: almost 6 years ago

10.1186/s13059-020-02148-3

Variation around the dominant viral genome sequence contributes to viral load and outcome in patients with Ebola virus disease
Cited by: 17
Author(s): Xiaofeng Dong, Jordana Muñoz-Basagoiti, Natasha Y. Rickett, Georgios Pollakis, William A. Paxton, Stephan Günther, Romy Kerber, Lisa F. P. Ng, Michael J. Elmore, N’Faly Magassouba, Miles W. Carroll, David A. Matthews, Julian A. Hiscox
Software Mentions: 5
Published: about 4 years ago

10.1371/journal.pone.0193417

Sex- and brain region-specific patterns of gene expression associated with socially-mediated puberty in a eusocial mammal
Cited by: 20
Author(s): Mariela Faykoo-Martinez, D. Ashley Monks, Iva B. Zovkic, Melissa M. Holmes
Software Mentions: 5
Published: almost 7 years ago

10.1186/s12874-020-01201-w

Re-evaluation of the comparative effectiveness of bootstrap-based optimism correction methods in the development of multivariable clinical prediction models
Cited by: 33
Author(s): Katsuhiro Iba, Tomohiro Shinozaki, Kazushi Maruo, Hisashi Noma
Software Mentions: 5
Published: almost 4 years ago

10.1186/s12874-018-0531-9

Meta-analysis of binary outcomes via generalized linear mixed models: a simulation study
Cited by: 31
Author(s): Ilyas Bakbergenuly, Elena Kulinskaya
Software Mentions: 5
Published: over 6 years ago

10.1186/s13148-016-0234-1

Amnion as a surrogate tissue reporter of the effects of maternal preeclampsia on the fetus
Cited by: 8
Author(s): Masako Suzuki, Ryo Maekawa, Nicole E. Patterson, David M. Reynolds, Brent Calder, Sandra E. Reznik, Hye Heo, Francine Einstein, John M. Greally
Software Mentions: 5
Published: over 8 years ago

10.1371/journal.pone.0152852

Allelic Variation in Developmental Genes and Effects on Winter Wheat Heading Date in the U.S. Great Plains
Cited by: 58
Author(s): Sarah M. Grogan, Gina Brown‐Guedira, Scott D. Haley, Gregory S. McMaster, Scott D. Reid, J. Spencer Smith, Patrick F. Byrne
Software Mentions: 5
Published: over 8 years ago

10.1186/s12911-017-0549-7

Association between borderline dysnatremia and mortality insight into a new data mining approach
Cited by: 18
Author(s): Yannick Girardeau, Anne‐Sophie Jannot, Gilles Châtellier, Olivier Saint-Jean
Software Mentions: 5
Published: about 7 years ago

10.1534/genetics.119.302138

Proteostasis Environment Shapes Higher-Order Epistasis Operating on Antibiotic Resistance
Cited by: 28
Author(s): Rafael F. Guerrero, Samuel V. Scarpino, João V. Rodrigues, Daniel L. Hartl, C. Brandon Ogbunugafor
Software Mentions: 5
Published: over 5 years ago

10.15252/msb.20209698

<scp>CEN</scp> ‐tools: an integrative platform to identify the contexts of essential genes
Cited by: 9
Author(s): Sumana Sharma, Cansu Dinçer, Paula Weidemüller, Gavin J. Wright, Evangelia Petsalaki
Software Mentions: 5
Published: about 4 years ago

10.1186/s12862-019-1570-5

Adaptive divergence in shell morphology in an ongoing gastropod radiation from Lake Malawi
Cited by: 6
Author(s): Bert Van Bocxlaer, Claudia M Ortiz-Sepulveda, Pieter Gurdebeke, Xavier Vekemans
Software Mentions: 5
Published: almost 5 years ago

10.3389/fmed.2021.674338

Role of Immune Cell-Specific Hypermethylation Signatures in Classification and Risk Stratification of Breast Cancer
Cited by: 0
Author(s): Yong Chen, Fada Xia, Bo Jiang, Wenlong Wang, Xinying Li
Software Mentions: 5
Published: over 3 years ago

10.1186/s13059-021-02486-w

PRINCESS: comprehensive detection of haplotype resolved SNVs, SVs, and methylation
Cited by: 23
Author(s): Medhat Mahmoud, Harshavardhan Doddapaneni, Winston Timp, Fritz J. Sedlazeck
Software Mentions: 5
Published: about 3 years ago

10.1038/s41598-020-67774-0

Lifestyle preferences drive the structure and diversity of bacterial and archaeal communities in a small riverine reservoir
Cited by: 7
Author(s): Carles M. Borrego, Sergi Sabater, Lorenzo Proia
Software Mentions: 5
Published: over 4 years ago

10.1186/1868-7083-6-4

Differences in smoking associated DNA methylation patterns in South Asians and Europeans
Cited by: 227
Author(s): Hannah R Elliott, Therese Tillin, Wendy L. McArdle, Karen Ho, Aparna Duggirala, Tim Frayling, George Davey Smith, Alun D. Hughes, Nish Chaturvedi, Caroline L Relton
Software Mentions: 5
Published: almost 11 years ago

10.1002/1878-0261.12070

Synergistic activity of everolimus and 5-aza-2′-deoxycytidine in medullary thyroid carcinoma cell lines
Cited by: 23
Author(s): Giovanna Mantovani, Alessandra Dicitore, Daniele Pepe, Davide Gentilini, Elisa Grassi, Maria Orietta Borghi, Giulia Gelmini, Maria Celeste Cantone, Germano Gaudenzi, Gabriella Misso, Anna Maria Di Blasio, Leo J. Hofland, Michele Caraglia, Luca Persani
Software Mentions: 5
Published: over 7 years ago

10.1002/1878-0261.12957

Androgen receptor signalling confers clonogenic and migratory advantages in urothelial cell carcinoma of the bladder
Cited by: 5
Author(s): Maria V. Luna‐Velez, Jelmer Dijkstra, Marina Augusto Heuschkel, Frank Smit, Guillaume van de Zande, Dominique Smeets, J.P. Michiel Sedelaar, Michiel Vermeulen, Gerald W. Verhaegh, Jack A. Schalken
Software Mentions: 5
Published: over 3 years ago

10.1186/s13059-019-1840-y

Genetic regulation of gene expression and splicing during a 10-year period of human aging
Cited by: 38
Author(s): Brunilda Balliu, Matthew G. Durrant, Olivia de Goede, Nathan S. Abell, Li X, Boxiang Liu, Michael J. Gloudemans, Naomi L. Cook, Kevin S. Smith, David A. Knowles, Mauro Pala, Francesco Cucca, David Schlessinger, Siddhartha Jaiswal, Chiara Sabatti, Lars Lind, Erik Ingelsson, Stephen B. Montgomery
Software Mentions: 5
Published: about 5 years ago

10.1038/s41598-020-67013-6

Finding undiagnosed patients with hepatitis C infection: an application of artificial intelligence to patient claims data
Cited by: 18
Author(s): Orla Doyle, Nadejda Leavitt, John A. Rigg
Software Mentions: 5
Published: over 4 years ago

10.1038/s41598-020-61496-z

Multiplexed MRM-based protein quantification of putative prognostic biomarkers for chronic kidney disease progression in plasma
Cited by: 16
Author(s): Manousos Makridakis, Georgia Kontostathi, Eleni Petra, Rafael Stroggilos, Vasiliki Lygirou, Szymon K. Filip, Flore Duranton, Harald Mischak, Àngel Argilés, Jérôme Zoidakis, Antonia Vlahou
Software Mentions: 5
Published: over 4 years ago

10.1186/s12876-018-0860-5

Changes in microbiota composition, bile and fatty acid metabolism, in successful faecal microbiota transplantation for Clostridioides difficile infection
Cited by: 56
Author(s): Jillian R. Brown, Burkhardt Flemer, Susan A. Joyce, Akbar Zulquernain, Donal Sheehan, Fergus Shanahan, Paul W. O’Toole
Software Mentions: 5
Published: over 6 years ago

10.1371/journal.pone.0198452

Large-scale patterns of benthic marine communities in the Brazilian Province
Cited by: 76
Author(s): Anaide W. Aued, Franz Smith, Juan P. Quimbayo, Davi V. Cândido, Guilherme O. Longo, Carlos E. L. Ferreira, Jon D. Witman, Sergio R. Floeter, Bárbara Segal
Software Mentions: 5
Published: over 6 years ago

10.3390/molecules26154588

Humic Acid Improves Zn Fertilization in Oxisols Successively Cultivated with Maize–Brachiaria
Cited by: 4
Author(s): Everton Geraldo de Morais, Carlos Alberto Silva, Keiji Jindo
Software Mentions: 5
Published: over 3 years ago

10.3390/cells8101196

Genome-Wide Distribution of Nascent Transcripts in Sperm DNA, Products of a Late Wave of General Transcription
Cited by: 6
Author(s): Leila Kianmehr, Homayoun Khazali, Hassan Rajabi‐Maham, Ali Sharifi‐Zarchi, François Cuzin, Minoo Rassoulzadegan
Software Mentions: 5
Published: about 5 years ago

10.1534/g3.119.400239

Partial Selfing Can Reduce Genetic Loads While Maintaining Diversity During Experimental Evolution
Cited by: 14
Author(s): Ivo M. Chelo, Bruno Afonso, Sara Carvalho, Ioannis Theologidis, Christine Goy, Ania Pino‐Querido, Stephen R. Proulx, Henrique Teotónio
Software Mentions: 5
Published: about 5 years ago

10.1016/j.cels.2021.05.005

A time-resolved proteomic and prognostic map of COVID-19
Cited by: 106
Author(s): Vadim Demichev, Pinkus Tober‐Lau, Oliver Lemke, Tatiana Nazarenko, Charlotte Thibeault, Harry J. Whitwell, Annika Röhl, Anja Freiwald, Łukasz Szyrwiel, Daniela Ludwig, Clara Correia‐Melo, Simran Kaur Aulakh, Elisa T Helbig, Paula Stubbemann, Lena J Lippert, Nana‐Maria Grüning, Oleg Blyuss, Spyros Vernardis, Matthew White, Christoph B. Messner, Michael Joannidis, Thomas Sonnweber, Sebastian Klein, Alex Pizzini, Yvonne Wohlfarter, Sabina Sahanic, Richard Hilbe, Benedikt Schaefer, Sonja Wagner, Mirja Mittermaier, Felix Machleidt, Carmen García, Christoph Ruwwe‐Glösenkamp, Tilman Lingscheid, Laure Bosquillon de Jarcy, Miriam Stegemann, Moritz Pfeiffer, Linda Jürgens, Sophy Denker, Daniel Zickler, Philipp Enghard, Aleksej Zelezniak, Archie Campbell, Caroline Hayward, David J. Porteous, Riccardo E. Marioni, Alexander Uhrig, Holger Müller-Redetzky, Heinz Zoller, Judith Löffler‐Ragg
Software Mentions: 5
Published: over 3 years ago

10.1016/j.xcrm.2020.100039

Human Tumor-Infiltrating MAIT Cells Display Hallmarks of Bacterial Antigen Recognition in Colorectal Cancer
Cited by: 27
Author(s): Shamin Li, Yannick Simoni, Étienne Becht, Chiew Yee Loh, Naisi Li, Daniel M. Lachance, Si-Lin Koo, Teck Por Lim, Emile Tan, Ronnie Mathew, Andrew Nguyen, Justin Golovato, Julia D. Berkson, Martin Prlic, Bernett Lee, Samuel S. Minot, Niranjan Nagarajan, Neelendu Dey, Daniel S.W. Tan, Iain Bee Huat Tan, Evan W. Newell
Software Mentions: 5
Published: over 4 years ago

10.1002/brb3.1788

There is No test–retest reliability of brain activation induced by robotic passive hand movement: A functional NIRS study
Cited by: 3
Author(s): Sung-Jin Bae, Yonghee Lee, Pyung Hun Chang
Software Mentions: 5
Published: over 4 years ago

10.1093/molbev/msv282

Population Structure Shapes Copy Number Variation in Malaria Parasites
Cited by: 43
Author(s): Ian H. Cheeseman, Becky A. Miller, John C. Tan, Aiping Tan, Shalini Nair, Standwell C. Nkhoma, Marcos De Donato, Hectorina Rodulfo, Arjen M. Dondorp, OraLee H. Branch, Lastenia Ruiz Mesía, Paul N. Newton, Mayfong Mayxay, Alfred Amambua-Ngwa, David J. Conway, François Nosten, Michael T. Ferdig, Tim Anderson
Software Mentions: 5
Published: about 9 years ago

10.1186/s12983-017-0193-1

Perception of emotional valence in horse whinnies
Cited by: 36
Author(s): Elodie F. Briefer, Roi Mandel, Anne-Laure Maigrot, Sabrina Briefer Freymond, Iris Bachmann, Edna Hillmann
Software Mentions: 5
Published: almost 8 years ago

10.1534/g3.118.200540

Regulation of Root Angle and Gravitropism
Cited by: 19
Author(s): Ted Toal, Mily Ron, Donald J Gibson, Kaisa Kajala, Bessie L. Splitt, Logan Johnson, Nathan D. Miller, Radka Slovak, Allison Gaudinier, Rohan Patel, Miguel de Lucas, Nicholas J. Provart, Edgar P. Spalding, Wolfgang Busch, Daniel J. Kliebenstein, Siobhán M. Brady
Software Mentions: 5
Published: almost 6 years ago

10.1093/molbev/msw124

Mapping Phylogenetic Trees to Reveal Distinct Patterns of Evolution
Cited by: 107
Author(s): Michaela Kendall, Caroline Colijn
Software Mentions: 5
Published: over 8 years ago

10.1186/s12864-015-2124-x

De novo transcriptome reconstruction and annotation of the Egyptian rousette bat
Cited by: 34
Author(s): Albert Kim Lee, Kirsten A. Kulcsar, Oliver Elliott, Hossein Khiabanian, Elyse R. Nagle, Megan E. B. Jones, Brian R. Amman, Mariano Sánchez-Lockhart, Jonathan S. Towner, Gustavo Palacios, Raúl Rabadán
Software Mentions: 5
Published: almost 9 years ago

10.1186/s12879-016-1702-0

The role of hand hygiene in controlling norovirus spread in nursing homes
Cited by: 21
Author(s): Rania Assab, Laura Temime
Software Mentions: 5
Published: over 8 years ago

10.1186/s13059-021-02494-w

Differential regulation of mRNA fate by the human Ccr4-Not complex is driven by coding sequence composition and mRNA localization
Cited by: 12
Author(s): Sarah L. Gillen, Chiara Giacomelli, Kelly Hodge, Sara Zanivan, Martin Bushell, Ania Wilczynska
Software Mentions: 5
Published: about 3 years ago

10.3389/fvets.2020.580400

Spatial and Simultaneous Seroprevalence of Anti-Leptospira Antibodies in Owners and Their Domiciled Dogs in a Major City of Southern Brazil
Cited by: 9
Author(s): Aline do Nascimento Benitez, Thaís Cabral Monica, Ana Carolina Miura, Micheline Sahyun Romanelli, Lucienne Garcia Pretto‐Giordano, Roberta Lemos Freire, Regina Mitsuka‐Breganó, Camila Marinelli Martins, Alexander Welker Biondo, Isabela Machado Serrano, Thiago Henrique Carneiro Rios Lopes, Renato Barbosa Reis, Jancarlo Ferreira Gomes, Federico Costa, Elsio A. Wunder, Albert I. Ko, Italmar Teodorico Navarro
Software Mentions: 5
Published: almost 4 years ago

10.1186/s12983-016-0178-5

Development of foraging skills in two orangutan populations: needing to learn or needing to grow?
Cited by: 36
Author(s): Caroline Schuppli, Sofia Forss, Ellen Meulman, Nicole Zweifel, Kevin C. Lee, Evasari Rukmana, Erin R. Vogel, Maria A. van Noordwijk, Carel P. van Schaik
Software Mentions: 5
Published: about 8 years ago

10.1371/journal.pone.0215351

The bacterial communities of the small intestine and stool in children with short bowel syndrome
Cited by: 14
Author(s): Steven L. Zeichner, Emmanuel F. Mongodin, Lauren E. Hittle, Szu-Han Huang, Clarivet Torres
Software Mentions: 5
Published: over 5 years ago

10.3390/microorganisms8040604

Unraveling Heterogeneity of Coral Microbiome Assemblages in Tropical and Subtropical Corals in the South China Sea
Cited by: 11
Author(s): Sanqiang Gong, Xuejie Jin, Lijuan Ren, Yehui Tan, Xiaomin Xia
Software Mentions: 5
Published: over 4 years ago

10.3390/microorganisms8030404

Understanding the Response of Nitrifying Communities to Disturbance in the McMurdo Dry Valleys, Antarctica
Cited by: 13
Author(s): Maria Monteiro, Mafalda S. Baptista, Joana Séneca, Luı́s Torgo, Charles K. Lee, S. Craig Cary, Catarina Magalhães
Software Mentions: 5
Published: over 4 years ago

10.3390/ijms19113421

Composition and Genetic Diversity of the Nicotiana tabacum Microbiome in Different Topographic Areas and Growth Periods
Cited by: 14
Author(s): Xiaolong Yuan, Min Cao, Xinmin Liu, Yongmei Du, Guoming Shen, Zhongfeng Zhang, Jinhai Li, Peng Zhang
Software Mentions: 5
Published: about 6 years ago

10.1371/journal.pone.0195273

AFLP-based genetic diversity of wild orchardgrass germplasm collections from Central Asia and Western China, and the relation to environmental factors
Cited by: 12
Author(s): Chenglin Zhang, Ming Sun, Xinquan Zhang, Shiyong Chen, Gang Nie, Yan Peng, Linkai Huang, Xiao Ma
Software Mentions: 5
Published: over 6 years ago

10.1186/1471-2164-13-26

Postmortem cardiac tissue maintains gene expression profile even after late harvesting
Cited by: 35
Author(s): Saloni Gupta, Marc K. Halushka, Gina M. Hilton, Dan E. Arking
Software Mentions: 5
Published: almost 13 years ago

10.1371/journal.pone.0183906

Flat and complex temperate reefs provide similar support for fish: Evidence for a unimodal species-habitat relationship
Cited by: 39
Author(s): Avery B. Paxton, Emily A. Pickering, Alyssa M. Adler, James C. Taylor, Charles H. Peterson
Software Mentions: 5
Published: about 7 years ago

10.3390/microorganisms8020308

The Human Oral Microbiome in Health and Disease: From Sequences to Ecosystems
Cited by: 206
Author(s): Jesse R. Willis, Toni Gabaldón
Software Mentions: 5
Published: almost 5 years ago

10.1186/s12864-016-3288-8

The ChIP-Seq tools and web server: a resource for analyzing ChIP-seq and other types of genomic data
Cited by: 24
Author(s): Giovanna Ambrosini, René Dreos, Sunil Kumar, Philipp Bücher
Software Mentions: 5
Published: about 8 years ago

10.3389/fpsyg.2021.681945

Comparing the Effect of Product-Based Metrics on the Translation Process
Cited by: 1
Author(s): Bram Vanroy, Moritz Schaeffer, Lieve Macken
Software Mentions: 5
Published: over 3 years ago

10.7554/eLife.60090

The organizational principles of de-differentiated topographic maps in somatosensory cortex
Cited by: 11
Author(s): Peng Liu, Anastasia Chrysidou, Juliane Doehler, Martin N. Hebart, Thomas Wolbers, Esther Kuehn
Software Mentions: 5
Published: over 3 years ago

10.3390/microorganisms9071457

Indicative Marker Microbiome Structures Deduced from the Taxonomic Inventory of 67 Full-Scale Anaerobic Digesters of 49 Agricultural Biogas Plants
Cited by: 7
Author(s): Julia Hassa, Johanna Klang, Dirk Benndorf, Marcel Pohl, Benedikt Hülsemann, Torsten Mächtig, Mathias Effenberger, Alfred Pühler, Andreas Schlüter, Susanne Theuerl
Software Mentions: 5
Published: over 3 years ago

10.1186/s42523-020-00058-0

Characterizing the cirri and gut microbiomes of the intertidal barnacle Semibalanus balanoides
Cited by: 1
Author(s): Bianca R. P. Brown, Joaquin C. B. Nunez, David M. Rand
Software Mentions: 5
Published: about 4 years ago

10.1016/j.chom.2020.01.004

Bacteriophages Isolated from Stunted Children Can Regulate Gut Bacterial Communities in an Age-Specific Manner
Cited by: 79
Author(s): Mohammadali Khan Mirzaei, Anik Ashfaq Khan, Prakash Ghosh, Zofia E. Taranu, Mariia Taguer, Jinlong Ru, Rajashree Chowdhury, Md. Mamun Kabir, Li Deng, Dinesh Mondal, Corinne F. Maurice
Software Mentions: 5
Published: almost 5 years ago

10.1186/s12864-016-3075-6

Non-linear interactions between candidate genes of myocardial infarction revealed in mRNA expression profiles
Cited by: 17
Author(s): Katherine E. Hartmann, Michał Seweryn, Samuel K. Handelman, Grzegorz A. Rempała, Wolfgang Sadée
Software Mentions: 5
Published: about 8 years ago

10.1186/s40168-017-0334-y

Enrichment of beneficial bacteria in the skin microbiota of bats persisting with white-nose syndrome
Cited by: 144
Author(s): Virginie Lemieux-Labonté, Anouk Simard, Craig K. R. Willis, François‐Joseph Lapointe
Software Mentions: 5
Published: about 7 years ago

10.7554/eLife.54880

Transient intracellular acidification regulates the core transcriptional heat shock response
Cited by: 45
Author(s): Catherine G. Triandafillou, Christopher D. Katanski, Aaron R. Dinner, D. Allan Drummond
Software Mentions: 5
Published: over 4 years ago

10.1186/s40168-017-0297-z

Formula diet driven microbiota shifts tryptophan metabolism from serotonin to tryptamine in neonatal porcine colon
Cited by: 69
Author(s): Manish Kumar Saraf, Brian D. Piccolo, Anne K. Bowlin, Kelly E. Mercer, Tanya LeRoith, Sree V. Chintapalli, Kartik Shankar, Thomas M. Badger, Laxmi Yeruva
Software Mentions: 5
Published: over 7 years ago

10.1186/s12859-019-2778-5

eNetXplorer: an R package for the quantitative exploration of elastic net families for generalized linear models
Cited by: 26
Author(s): Julián Candia, John S. Tsang
Software Mentions: 5
Published: over 5 years ago

10.1186/s40168-018-0543-z

Quantification of variation and the impact of biomass in targeted 16S rRNA gene sequencing studies
Cited by: 40
Author(s): Jeffrey M. Bender, Fan Li, Helty Adisetiyo, David Lee, Sara Zabih, Long Hung, Thomas A. Wilkinson, Pia S. Pannaraj, Rosemary C. She, Jennifer Dien Bard, Nicole H. Tobin, Grace M. Aldrovandi
Software Mentions: 5
Published: about 6 years ago

10.1186/s12864-020-06795-5

Transcriptomic and biochemical investigations support the role of rootstock-scion interaction in grapevine berry quality
Cited by: 27
Author(s): Alessandra Zombardo, Cristina Crosatti, Paolo Bagnaresi, Laura Bassolino, Noam Reshef, Sergio Puccioni, Primetta Faccioli, Alessio Tafuri, Massimo Delledonne, Aaron Fait, Paolo Storchi, Luigi Cattivelli, Erica Mica
Software Mentions: 5
Published: over 4 years ago

10.1186/s40425-018-0328-8

Distinct predictive biomarker candidates for response to anti-CTLA-4 and anti-PD-1 immunotherapy in melanoma patients
Cited by: 140
Author(s): Priyanka B. Subrahmanyam, Zhiwan Dong, Daniel Gusenleitner, Anita Giobbie‐Hurder, Mariano Severgnini, Jun Zhou, Michael P. Manos, Lauren M. Eastman, Holden T. Maecker, F. Stephen Hodi
Software Mentions: 5
Published: over 6 years ago

10.1186/s40168-016-0189-7

Cardiorespiratory fitness as a predictor of intestinal microbial diversity and distinct metagenomic functions
Cited by: 274
Author(s): Mehrbod Estaki, Jason Pither, Peter Baumeister, Jonathan P. Little, S K Gill, Sanjoy Ghosh, Ahmadi-Vand Zahra, Katelyn Marsden, Deanna L. Gibson
Software Mentions: 5
Published: over 8 years ago

10.3389/fpls.2020.00244

Proximal Sensing of Soil Electrical Conductivity Provides a Link to Soil-Plant Water Relationships and Supports the Identification of Plant Water Status Zones in Vineyards
Cited by: 22
Author(s): Runze Yu, S. Kaan Kurtural
Software Mentions: 5
Published: over 4 years ago

10.1371/journal.pone.0231068

Effects of a blend of essential oils in milk replacer on performance, rumen fermentation, blood parameters, and health scores of dairy heifers
Cited by: 7
Author(s): Joana Palhares Campolina, Sandra Gesteira Coelho, Anna Luiza Belli, F. S. Machado, L. G. R. Pereira, T. R. Tomich, Wanessa A. Carvalho, Rodrigo Silva, Alessandra L. Voorsluys, David Vanni Jacob, M. M. Campos
Software Mentions: 5
Published: over 3 years ago

10.1002/advs.201801254

Detection of CTC Clusters and a Dedifferentiated RNA‐Expression Survival Signature in Prostate Cancer
Cited by: 28
Author(s): Molly Kozminsky, Shamileh Fouladdel, Jin Hoon Chung, Yugang Wang, David C. Smith, Ajjai Alva, Ebrahim Azizi, Todd M. Morgan, Sunitha Nagrath
Software Mentions: 5
Published: about 6 years ago

10.3389/fpls.2020.00790

Spatial Variability of Soil and Plant Water Status and Their Cascading Effects on Grapevine Physiology Are Linked to Berry and Wine Chemistry
Cited by: 27
Author(s): Runze Yu, Luca Brillante, Johann Martínez‐Lüscher, S. Kaan Kurtural
Software Mentions: 5
Published: over 4 years ago

10.1186/s40168-020-00819-8

Multi-omics reveals that the rumen microbiome and its metabolome together with the host metabolome contribute to individualized dairy cow performance
Cited by: 139
Author(s): Mingyuan Xue, Hui-Zeng Sun, Xinke Wu, Jianxin Liu, Le Luo Guan
Software Mentions: 5
Published: over 4 years ago

10.1186/s12864-021-07872-z

Grid search approach to discriminate between old and recent inbreeding using phenotypic, pedigree and genomic information
Cited by: 5
Author(s): Pattarapol Sumreddee, El Hamidi Hay, Sajjad Toghiani, Andrew Roberts, Samuel E. Aggrey, Romdhane Rekaya
Software Mentions: 5
Published: over 3 years ago

10.3390/ijerph18062832

Impact of Covid-19 Lockdown on Availability of Drinking Water in the Arsenic-Affected Ganges River Basin
Cited by: 17
Author(s): Srimanti Duttagupta, Soumendra N. Bhanja, Avishek Dutta, S. Sarkar, M. Chakraborty, Ashok Ghosh, Debapriya Mondal, Abhijit Mukherjee
Software Mentions: 5
Published: over 3 years ago

10.1099/mgen.0.000190

Genetic analysis of invasive Escherichia coli in Scotland reveals determinants of healthcare-associated versus community-acquired infections
Cited by: 32
Author(s): Cosmika Goswami, Stephen Fox, Matthew T. G. Holden, Martin Connor, Alistair Leanord, Thomas J. Evans
Software Mentions: 5
Published: over 6 years ago

10.3389/fpls.2020.00320

Divide to Conquer: Evolutionary History of Allioideae Tribes (Amaryllidaceae) Is Linked to Distinct Trends of Karyotype Evolution
Cited by: 17
Author(s): Lucas Costa, Horace José Jimenez, Reginaldo de Carvalho, Jefferson Guedes de Carvalho-Sobrinho, Inelia Escobar, Gustavo Souza
Software Mentions: 5
Published: over 4 years ago

10.1186/s12859-020-03801-1

PyGNA: a unified framework for geneset network analysis
Cited by: 0
Author(s): Viola Fanfani, Francesco Serra Cassano, Giovanni Stracquadanio
Software Mentions: 5
Published: about 4 years ago

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