10.1186/1471-2164-13-26

Postmortem cardiac tissue maintains gene expression profile even after late harvesting
Cited by: 35
Author(s): Saloni Gupta, Marc K. Halushka, Gina M. Hilton, Dan E. Arking
Software Mentions: 5
Published: over 14 years ago

10.3389/fmicb.2021.711359

Circulating Levels of the Short-Chain Fatty Acid Acetate Mediate the Effect of the Gut Microbiome on Visceral Fat
Cited by: 67
Author(s): Ana Nogal, Panayiotis Louca, Mengjie Zhang, Philippa M Wells, Claire J. Steves, Tim D. Spector, Mario Falchi, Ana M. Valdes, Cristina Menni
Software Mentions: 5
Published: about 5 years ago

10.1128/mBio.03186-19

Fecal Metabolomic Signatures in Colorectal Adenoma Patients Are Associated with Gut Microbiota and Early Events of Colorectal Cancer Pathogenesis
Cited by: 86
Author(s): Minsuk Kim, Emily Vogtmann, David A. Ahlquist, Mary E. Devens, John B. Kisiel, William R. Taylor, Bryan A. White, Vanessa L. Hale, Jaeyun Sung, Nicholas Chia, Rashmi Sinha, Jun Chen
Software Mentions: 5
Published: over 6 years ago

10.3389/fmed.2021.674338

Role of Immune Cell-Specific Hypermethylation Signatures in Classification and Risk Stratification of Breast Cancer
Cited by: 0
Author(s): Yong Chen, Fada Xia, Bo Jiang, Wenlong Wang, Xinying Li
Software Mentions: 5
Published: about 5 years ago

10.1371/journal.pone.0168992

Body Condition Peaks at Intermediate Parasite Loads in the Common Bully Gobiomorphus cotidianus
Cited by: 15
Author(s): Alberto Maceda‐Veiga, Andy J. Green, Robert Poulin, Clément Lagrue
Software Mentions: 5
Published: over 9 years ago

10.1128/mBio.00180-20

Systemic Inflammatory Mediators Are Effective Biomarkers for Predicting Adverse Outcomes in Clostridioides difficile Infection
Cited by: 16
Author(s): Michael G. Dieterle, Rosemary Putler, D. Alexander Perry, Anitha Menon, Lisa Abernathy-Close, Naomi Perlman, Aline Penkevich, Alex Standke, Micah Keidan, Kimberly C. Vendrov, Ingrid L. Bergin, Vincent B. Young, Krishna Rao
Software Mentions: 5
Published: about 6 years ago

10.3390/microorganisms8020308

The Human Oral Microbiome in Health and Disease: From Sequences to Ecosystems
Cited by: 206
Author(s): Jesse R. Willis, Toni Gabaldón
Software Mentions: 5
Published: over 6 years ago

10.1186/s12864-016-3288-8

The ChIP-Seq tools and web server: a resource for analyzing ChIP-seq and other types of genomic data
Cited by: 24
Author(s): Giovanna Ambrosini, René Dreos, Sunil Kumar, Philipp Bücher
Software Mentions: 5
Published: almost 10 years ago

10.1371/journal.pone.0135716

Structural Morphology of Molars in Large Mammalian Herbivores: Enamel Content Varies between Tooth Positions
Cited by: 11
Author(s): Daniela Winkler, Thomas M. Kaiser
Software Mentions: 5
Published: about 11 years ago

10.1128/mBio.00311-19

Gut Microbiota and Phytoestrogen-Associated Infertility in Southern White Rhinoceros
Cited by: 32
Author(s): Candace L. Williams, Alexis R. Ybarra, Ashley N. Meredith, Barbara S. Durrant, Christopher W. Tubbs
Software Mentions: 5
Published: over 7 years ago

10.1128/mBio.03042-19

Quantitative Framework for Model Evaluation in Microbiology Research Using <i>Pseudomonas aeruginosa</i> and Cystic Fibrosis Infection as a Test Case
Cited by: 83
Author(s): Daniel M. Cornforth, Frances L. Diggle, Jeffrey A. Melvin, Jennifer M. Bomberger, Marvin Whiteley
Software Mentions: 5
Published: over 6 years ago

10.3390/microorganisms9071457

Indicative Marker Microbiome Structures Deduced from the Taxonomic Inventory of 67 Full-Scale Anaerobic Digesters of 49 Agricultural Biogas Plants
Cited by: 7
Author(s): Julia Hassa, Johanna Klang, Dirk Benndorf, Marcel Pohl, Benedikt Hülsemann, Torsten Mächtig, Mathias Effenberger, Alfred Pühler, Andreas Schlüter, Susanne Theuerl
Software Mentions: 5
Published: about 5 years ago

10.3389/fmed.2017.00153

TruSeq-Based Gene Expression Analysis of Formalin-Fixed Paraffin-Embedded (FFPE) Cutaneous T-Cell Lymphoma Samples: Subgroup Analysis Results and Elucidation of Biases from FFPE Sample Processing on the TruSeq Platform
Cited by: 15
Author(s): Philippe Lefrançois, Michael T. Tetzlaff, Linda Moreau, Andrew Watters, Elena Netchiporouk, Nathalie Provost, Martin Gilbert, Xiao Ni, Denis Sasseville, Madeleine Duvic, Ivan V. Litvinov
Software Mentions: 5
Published: almost 9 years ago

10.1186/s12864-016-3075-6

Non-linear interactions between candidate genes of myocardial infarction revealed in mRNA expression profiles
Cited by: 17
Author(s): Katherine E. Hartmann, Michał Seweryn, Samuel K. Handelman, Grzegorz A. Rempała, Wolfgang Sadée
Software Mentions: 5
Published: almost 10 years ago

10.1186/s40168-017-0334-y

Enrichment of beneficial bacteria in the skin microbiota of bats persisting with white-nose syndrome
Cited by: 144
Author(s): Virginie Lemieux-Labonté, Anouk Simard, Craig K. R. Willis, François‐Joseph Lapointe
Software Mentions: 5
Published: about 9 years ago

10.1186/s40168-017-0297-z

Formula diet driven microbiota shifts tryptophan metabolism from serotonin to tryptamine in neonatal porcine colon
Cited by: 69
Author(s): Manish Kumar Saraf, Brian D. Piccolo, Anne K. Bowlin, Kelly E. Mercer, Tanya LeRoith, Sree V. Chintapalli, Kartik Shankar, Thomas M. Badger, Laxmi Yeruva
Software Mentions: 5
Published: about 9 years ago

10.1038/s41398-021-01410-x

Obsessive–compulsive symptoms and information seeking during the Covid-19 pandemic
Cited by: 22
Author(s): Alisa M. Loosen, Vasilisa Skvortsova, Tobias U. Hauser
Software Mentions: 5
Published: over 5 years ago

10.1186/s12859-019-2778-5

eNetXplorer: an R package for the quantitative exploration of elastic net families for generalized linear models
Cited by: 26
Author(s): Julián Candia, John S. Tsang
Software Mentions: 5
Published: over 7 years ago

10.1186/s40168-018-0543-z

Quantification of variation and the impact of biomass in targeted 16S rRNA gene sequencing studies
Cited by: 40
Author(s): Jeffrey M. Bender, Fan Li, Helty Adisetiyo, David Lee, Sara Zabih, Long Hung, Thomas A. Wilkinson, Pia S. Pannaraj, Rosemary C. She, Jennifer Dien Bard, Nicole H. Tobin, Grace M. Aldrovandi
Software Mentions: 5
Published: almost 8 years ago

10.1186/s12864-020-06795-5

Transcriptomic and biochemical investigations support the role of rootstock-scion interaction in grapevine berry quality
Cited by: 27
Author(s): Alessandra Zombardo, Cristina Crosatti, Paolo Bagnaresi, Laura Bassolino, Noam Reshef, Sergio Puccioni, Primetta Faccioli, Alessio Tafuri, Massimo Delledonne, Aaron Fait, Paolo Storchi, Luigi Cattivelli, Erica Mica
Software Mentions: 5
Published: about 6 years ago

10.1371/journal.pone.0202970

Effects of alpha-(1,2)-fucosyltransferase genotype variants on plasma metabolome, immune responses and gastrointestinal bacterial enumeration of pigs pre- and post-weaning
Cited by: 13
Author(s): Ann Sofie Riis Poulsen, Diana Luise, Mihai Victor Curtasu, Sugiharto Sugiharto, Nuria Canibe, Paolo Trevisi, Charlotte Lauridsen
Software Mentions: 5
Published: about 8 years ago

10.1186/s40168-016-0189-7

Cardiorespiratory fitness as a predictor of intestinal microbial diversity and distinct metagenomic functions
Cited by: 274
Author(s): Mehrbod Estaki, Jason Pither, Peter Baumeister, Jonathan P. Little, S K Gill, Sanjoy Ghosh, Ahmadi-Vand Zahra, Katelyn Marsden, Deanna L. Gibson
Software Mentions: 5
Published: about 10 years ago

10.1371/journal.pone.0223949

Megabenthic communities of the Ligurian deep continental shelf and shelf break (NW Mediterranean Sea)
Cited by: 35
Author(s): Francesco Enrichetti, Carlos Domínguez-Carrió, Margherita Toma, Giorgio Bavestrello, Federico Betti, Simonepietro Canese, Marzia Bo
Software Mentions: 5
Published: almost 7 years ago

10.1002/advs.201801254

Detection of CTC Clusters and a Dedifferentiated RNA‐Expression Survival Signature in Prostate Cancer
Cited by: 28
Author(s): Molly Kozminsky, Shamileh Fouladdel, Jin Hoon Chung, Yugang Wang, David C. Smith, Ajjai Alva, Ebrahim Azizi, Todd M. Morgan, Sunitha Nagrath
Software Mentions: 5
Published: almost 8 years ago

10.3389/fpls.2020.00244

Proximal Sensing of Soil Electrical Conductivity Provides a Link to Soil-Plant Water Relationships and Supports the Identification of Plant Water Status Zones in Vineyards
Cited by: 22
Author(s): Runze Yu, S. Kaan Kurtural
Software Mentions: 5
Published: over 6 years ago

10.1371/journal.pone.0175464

Identification of potential biomarkers in donor cows for in vitro embryo production by granulosa cell transcriptomics
Cited by: 12
Author(s): Gianluca Mazzoni, Suraya Mohamad Salleh, Kristine Freude, Helene Helboe Pedersen, Lotte Stroebech, Henrik Callesen, Poul Hyttel, Haja N. Kadarmideen
Software Mentions: 5
Published: over 9 years ago

10.7150/thno.57775

Machine learning-assisted immune profiling stratifies peri-implantitis patients with unique microbial colonization and clinical outcomes
Cited by: 20
Author(s): Chin-Wei Wang, Yuning Hao, Riccardo Di Gianfilippo, James V. Sugai, Jiaqian Li, Wang Gong, Kenneth S. Kornman, Hom‐Lay Wang, Nobuhiko Kamada, Yuying Xie, William V. Giannobile, Yu Lei
Software Mentions: 5
Published: over 5 years ago

10.1186/s40168-020-00819-8

Multi-omics reveals that the rumen microbiome and its metabolome together with the host metabolome contribute to individualized dairy cow performance
Cited by: 139
Author(s): Mingyuan Xue, Hui-Zeng Sun, Xinke Wu, Jianxin Liu, Le Luo Guan
Software Mentions: 5
Published: over 6 years ago

10.1186/s12864-021-07872-z

Grid search approach to discriminate between old and recent inbreeding using phenotypic, pedigree and genomic information
Cited by: 5
Author(s): Pattarapol Sumreddee, El Hamidi Hay, Sajjad Toghiani, Andrew Roberts, Samuel E. Aggrey, Romdhane Rekaya
Software Mentions: 5
Published: about 5 years ago

10.1371/journal.pntd.0005223

MLST-Based Population Genetic Analysis in a Global Context Reveals Clonality amongst Cryptococcus neoformans var. grubii VNI Isolates from HIV Patients in Southeastern Brazil
Cited by: 55
Author(s): Kennio Ferreira‐Paim, Leonardo Andrade-Silva, Fernanda Machado Fonseca, Thatiana Bragine Ferreira, Delio José Mora, Juliana Andrade-Silva, Aziza Khan, Aiken Dao, Eduardo C. Reis, Margarete Teresa Gottardo de Almeida, André Luiz Maltos, R. Virmondes, Luciana Trilles, Volker Rickerts, Ariya Chindamporn, Jane E. Sykes, Massimo Cogliati, Kirsten Nielsen, Teun Boekhout, Matthew C. Fisher, June Kwon‐Chung, David M. Engelthaler, Márcia dos Santos Lazéra, Wieland Meyer, Mário León Silva-Vergara
Software Mentions: 5
Published: over 9 years ago

10.1099/mgen.0.000190

Genetic analysis of invasive Escherichia coli in Scotland reveals determinants of healthcare-associated versus community-acquired infections
Cited by: 32
Author(s): Cosmika Goswami, Stephen Fox, Matthew T. G. Holden, Martin Connor, Alistair Leanord, Thomas J. Evans
Software Mentions: 5
Published: over 8 years ago

10.1186/s12859-020-03801-1

PyGNA: a unified framework for geneset network analysis
Cited by: 0
Author(s): Viola Fanfani, Francesco Serra Cassano, Giovanni Stracquadanio
Software Mentions: 5
Published: almost 6 years ago

10.3390/s19030626

Understanding Eye Movement Signal Characteristics Based on Their Dynamical and Fractal Features
Cited by: 6
Author(s): Katarzyna Harężlak, Paweł Kasprowski
Software Mentions: 5
Published: over 7 years ago

10.1007/s00248-019-01435-2

The Bacterial Flora Associated with the Polyphagous Aphid Aphis gossypii Glover (Hemiptera: Aphididae) Is Strongly Affected by Host Plants
Cited by: 26
Author(s): Shifen Xu, Li‐Yun Jiang, Ge‐Xia Qiao, Jing Chen
Software Mentions: 5
Published: almost 7 years ago

10.1186/s12864-020-6746-2

Genetic differentiation and intrinsic genomic features explain variation in recombination hotspots among cocoa tree populations
Cited by: 13
Author(s): Enrique J. Schwarzkopf, Juan Carlos Motamayor, Omar E. Cornejo
Software Mentions: 5
Published: over 6 years ago

10.1186/s13395-017-0144-8

Comparison of multiple transcriptomes exposes unified and divergent features of quiescent and activated skeletal muscle stem cells
Cited by: 29
Author(s): Natalia Pietrosemoli, Sébastien Mella, Siham Yennek, Meryem B. Baghdadi, Hiroshi Sakai, Ramkumar Sambasivan, Francesca Pala, Daniela Di Girolamo, Shahragim Tajbakhsh
Software Mentions: 5
Published: almost 9 years ago

10.1186/s12864-016-3254-5

Integrated metagenomic data analysis demonstrates that a loss of diversity in oral microbiota is associated with periodontitis
Cited by: 72
Author(s): Dongmei Ai, Ruocheng Huang, Ji Wen, Chao Li, Jianguo Zhu, Xia Li
Software Mentions: 5
Published: over 9 years ago

10.1111/1751-7915.12348

Towards the development of multifunctional molecular indicators combining soil biogeochemical and microbiological variables to predict the ecological integrity of silvicultural practices
Cited by: 2
Author(s): Vincent Peck, Liliana Quiza, Jean‐Philippe Buffet, Mondher Khdhiri, Audrey‐Anne Durand, Alain Paquette, Nelson Thiffault, Christian Messier, Nadyre Beaulieu, Claude Guertin, Philippe Constant
Software Mentions: 5
Published: over 10 years ago

10.1002/ece3.6273

Cones structure and seed traits of four species of large‐seeded pines: Adaptation to animal‐mediated dispersal
Cited by: 1
Author(s): Manyu Zhang, Chang-Xiang Su, Changhu Lu
Software Mentions: 5
Published: over 6 years ago

10.1186/1471-2164-15-990

Sequence differences at orthologous microsatellites inflate estimates of human-chimpanzee differentiation
Cited by: 5
Author(s): Michelle Kwong, Trevor J. Pemberton
Software Mentions: 5
Published: over 12 years ago

10.3389/fpsyg.2021.681945

Comparing the Effect of Product-Based Metrics on the Translation Process
Cited by: 1
Author(s): Bram Vanroy, Moritz Schaeffer, Lieve Macken
Software Mentions: 5
Published: about 5 years ago

10.3389/fimmu.2020.588405

Impact of Persistent Anemia on Systemic Inflammation and Tuberculosis Outcomes in Persons Living With HIV
Cited by: 16
Author(s): Fernanda O. Demitto, Mariana Araújo-Pereira, Carolina AranaStanis Schmaltz, Flávia Marinho Sant’Anna, María B. Arriaga, Bruno B. Andrade, Valeria Rolla
Software Mentions: 5
Published: almost 6 years ago

10.3389/fpls.2020.00790

Spatial Variability of Soil and Plant Water Status and Their Cascading Effects on Grapevine Physiology Are Linked to Berry and Wine Chemistry
Cited by: 27
Author(s): Runze Yu, Luca Brillante, Johann Martínez‐Lüscher, S. Kaan Kurtural
Software Mentions: 5
Published: about 6 years ago

10.3389/fgene.2021.644516

G2S: A New Deep Learning Tool for Predicting Stool Microbiome Structure From Oral Microbiome Data
Cited by: 5
Author(s): Simone Rampelli, Marco Fabbrini, Marco Candela, Elena Biagi, Patrizia Brigidi, Silvia Turroni
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pone.0214372

Patterns of funerary variability, diet, and developmental stress in a Celtic population from NE Italy (3rd-1st c BC)
Cited by: 12
Author(s): Zita Laffranchi, Giuliana Cavalieri Manasse, Luciano Salzani, Marco Milella
Software Mentions: 5
Published: over 7 years ago

10.4269/ajtmh.18-0469

Potential Biological Control of Schistosomiasis by Fishes in the Lower Senegal River Basin
Cited by: 11
Author(s): Martin C. Arostegui, Chelsea L. Wood, Isabel J. Jones, Andrew J. Chamberlin, Nicolas Jouanard, Daouda Faye, Armand M. Kuris, Gilles Riveau, Giulio A. De Leo, Susanne H. Sokolow
Software Mentions: 5
Published: over 7 years ago

10.1038/s41598-021-98782-3

Evaluation of JATSdecoder as an automated text extraction tool for statistical results in scientific reports
Cited by: 5
Author(s): Ingmar Böschen
Software Mentions: 5
Published: almost 5 years ago

10.1007/s00066-019-01522-w

Tumor regression during radiotherapy for non-small cell lung cancer patients using cone-beam computed tomography images
Cited by: 5
Author(s): Janita E. van Timmeren, Wouter van Elmpt, Dirk De Ruysscher, Bart Reymen, Olfred Hansen, Carsten Brink
Software Mentions: 5
Published: almost 7 years ago

10.3389/fpls.2021.715683

Morphological, Physiological, and Molecular Responses of Sweetly Fragrant Luculia gratissima During the Floral Transition Stage Induced by Short-Day Photoperiod
Cited by: 0
Author(s): Xiongfang Liu, Yat-wah Wan, Jing An, Xiujiao Zhang, Yurong Cao, Zhenghong Li, Xiuxian Liu, Hong Ma
Software Mentions: 5
Published: about 5 years ago

10.3390/insects11060326

Evolutionary Patterns of Sex-Biased Genes in Three Species of Haplodiploid Insects
Cited by: 0
Author(s): Yujun Wang, Hua-Ling Wang, Xiaowei Wang, Shu‐Sheng Liu
Software Mentions: 5
Published: over 6 years ago

10.3390/insects12040298

Effectiveness of Push–Pull Systems to Fall Armyworm (Spodoptera frugiperda) Management in Maize Crops in Morelos, Mexico
Cited by: 4
Author(s): Ouorou Ganni Mariel Guera, Federico Castrejón-Ayala, Norma Robledo, Alfredo Jiménez‐Pérez, Georgina Sánchez-Rivera, Lilia Salazar-Marcial, Hilda Elizabet Flores Moctezuma
Software Mentions: 5
Published: over 5 years ago

10.1002/ieam.4350

Glyphosate Toxicity to Native Nontarget Macrophytes Following Three Different Routes of Incidental Exposure
Cited by: 17
Author(s): Verena Sesin, Christina M. Davy, Kenneth N. Stevens, Rebekah Hamp, Joanna R. Freeland
Software Mentions: 5
Published: almost 6 years ago

10.1111/jbi.13746

Drivers of bromeliad leaf and floral bract variation across a latitudinal gradient in the Atlantic Forest
Cited by: 4
Author(s): Beatriz Neves, Camila Martini Zanella, Igor Musauer Kessous, Fernando Pérez Uribbe, Fabiano Salgueiro, Fernanda Bered, Alexandre Antonelli, Christine D. Bacon, Andrea Costa
Software Mentions: 5
Published: almost 7 years ago

10.1371/journal.pone.0215351

The bacterial communities of the small intestine and stool in children with short bowel syndrome
Cited by: 14
Author(s): Steven L. Zeichner, Emmanuel F. Mongodin, Lauren E. Hittle, Szu-Han Huang, Clarivet Torres
Software Mentions: 5
Published: over 7 years ago

10.1371/journal.pone.0152852

Allelic Variation in Developmental Genes and Effects on Winter Wheat Heading Date in the U.S. Great Plains
Cited by: 58
Author(s): Sarah M. Grogan, Gina Brown‐Guedira, Scott D. Haley, Gregory S. McMaster, Scott D. Reid, J. Spencer Smith, Patrick F. Byrne
Software Mentions: 5
Published: over 10 years ago

10.1002/jbio.201960025

Bladder tissue characterization using probe‐based Raman spectroscopy: Evaluation of tissue heterogeneity and influence on the model prediction
Cited by: 19
Author(s): Eliana Cordero, Jan Rüger, Dominik Marti, Abdullah Saif Mondol, Thomas Hasselager, Karin Mogensen, Gregers G. Hermann, Jürgen Popp, Iwan W. Schie
Software Mentions: 5
Published: almost 7 years ago

10.1242/jcs.232223

Tox4 modulates cell fate reprogramming
Cited by: 12
Author(s): Lotte Vanheer, Juan Song, Natalie De Geest, Adrian Janiszewski, Irene Talón, Caterina Provenzano, Taeho Oh, Joel Chappell, Vincent Pasque
Software Mentions: 5
Published: over 7 years ago

10.1371/journal.pone.0193417

Sex- and brain region-specific patterns of gene expression associated with socially-mediated puberty in a eusocial mammal
Cited by: 20
Author(s): Mariela Faykoo-Martinez, D. Ashley Monks, Iva B. Zovkic, Melissa M. Holmes
Software Mentions: 5
Published: over 8 years ago

10.18632/oncotarget.17462

Epigenome-wide association study in hepatocellular carcinoma: Identification of stochastic epigenetic mutations through an innovative statistical approach
Cited by: 43
Author(s): Davide Gentilini, Stefania Scala, Germano Gaudenzi, Paolo Garagnani, Miriam Capri, Matteo Cescon, Gian Luca Grazi, Maria Giulia Bacalini, Serena Pisoni, Alessandra Dicitore, Luisa Circelli, Sara Santagata, Francesco Izzo, Anna Maria Di Blasio, Luca Persani, Claudio Franceschi, Giovanna Mantovani
Software Mentions: 5
Published: over 9 years ago

10.3390/jcm10112524

Evaluation of Intracranial Hypertension in Traumatic Brain Injury Patient: A Noninvasive Approach Based on Cranial Computed Tomography Features
Cited by: 4
Author(s): Yingchi Shan, Yihua Li, Xuxu Xu, Junfeng Feng, Xiang Wu, Guoyi Gao
Software Mentions: 5
Published: over 5 years ago

10.1038/s41598-020-68933-z

Size resolved characteristics of urban and suburban bacterial bioaerosols in Japan as assessed by 16S rRNA amplicon sequencing
Cited by: 14
Author(s): Daisuke Tanaka, So Fujiyoshi, Fumito Maruyama, Motoshi Goto, Shinichi Koyama, Jun-ichi Kanatani, Junko Isobe, Masanori Watahiki, Akihiro Sakatoku, Shigehiro Kagaya, Shōgo Nakamura
Software Mentions: 5
Published: about 6 years ago

10.1038/s41598-020-68926-y

Subliminal determinants of cue-guided choice
Cited by: 7
Author(s): Sara Garofalo, Laura Sagliano, Francesca Starita, Luigi Trojano, Giuseppe di Pellegrino
Software Mentions: 5
Published: about 6 years ago

10.1111/jeb.13402

Costs of weaponry: Unarmed males sire more offspring than armed males in a male-dimorphic mite
Cited by: 10
Author(s): Tom P. G. Van den Beuken, Chris C. Duinmeijer, Isabel M. Smallegange
Software Mentions: 5
Published: almost 8 years ago

10.1038/s41598-020-67774-0

Lifestyle preferences drive the structure and diversity of bacterial and archaeal communities in a small riverine reservoir
Cited by: 7
Author(s): Carles M. Borrego, Sergi Sabater, Lorenzo Proia
Software Mentions: 5
Published: about 6 years ago

10.1038/s41598-020-67013-6

Finding undiagnosed patients with hepatitis C infection: an application of artificial intelligence to patient claims data
Cited by: 18
Author(s): Orla Doyle, Nadejda Leavitt, John A. Rigg
Software Mentions: 5
Published: about 6 years ago

10.1038/s41598-020-60564-8

16S rRNA gene sequencing reveals an altered composition of the gut microbiota in chickens infected with a nephropathogenic infectious bronchitis virus
Cited by: 10
Author(s): Puzhi Xu, Yan Shi, Ping Liu, Yulin Yang, Changming Zhou, Guyue Li, Junrong Luo, Caiying Zhang, Cao H, Guoliang Hu, Xiaomin Guo
Software Mentions: 5
Published: over 6 years ago

10.1038/s41598-020-66558-w

Associations among neurophysiology measures in irritable bowel syndrome (IBS) and their relevance for IBS symptoms
Cited by: 11
Author(s): Irina Midenfjord, Annikka Polster, Henrik Sjövall, Peter Friberg, Hans Törnblom, Magnus Simrén
Software Mentions: 5
Published: about 6 years ago

10.1038/s41598-020-61496-z

Multiplexed MRM-based protein quantification of putative prognostic biomarkers for chronic kidney disease progression in plasma
Cited by: 16
Author(s): Manousos Makridakis, Georgia Kontostathi, Eleni Petra, Rafael Stroggilos, Vasiliki Lygirou, Szymon K. Filip, Flore Duranton, Harald Mischak, Àngel Argilés, Jérôme Zoidakis, Antonia Vlahou
Software Mentions: 5
Published: over 6 years ago

10.1038/s41598-020-65579-9

The RNA disruption assay is superior to conventional drug sensitivity assays in detecting cytotoxic drugs
Cited by: 3
Author(s): Jonathan Mapletoft, Renée St-Onge, Baoqing Guo, Phillipe Butler, Twinkle Masilamani, Lavina D'costa, Laura B. Pritzker, Amadeo M. Parissenti
Software Mentions: 5
Published: over 6 years ago

10.1371/journal.pone.0166969

Hybrid Origins of Citrus Varieties Inferred from DNA Marker Analysis of Nuclear and Organelle Genomes
Cited by: 72
Author(s): Tokurou Shimizu, Akira Kitajima, Kenichi Nonaka, Terutaka Yoshioka, Satoshi Ohta, Shingo Goto, Atsushi Toyoda, Asao Fujiyama, Takako Mochizuki, Hideki Nagasaki, Eli Kaminuma, Yasukazu Nakamura
Software Mentions: 5
Published: almost 10 years ago

10.1155/2021/6641421

Prognostic Models for Nonmetastatic Triple-Negative Breast Cancer Based on the Pretreatment Serum Tumor Markers with Machine Learning
Cited by: 0
Author(s): Huihui Chen, Shijie Wu, Jun Hu, Kun Zhang, Kaimin Hu, Yingfeng Lu, Jiapan He, Tao Pan, Yiding Chen
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pone.0231068

Effects of a blend of essential oils in milk replacer on performance, rumen fermentation, blood parameters, and health scores of dairy heifers
Cited by: 7
Author(s): Joana Palhares Campolina, Sandra Gesteira Coelho, Anna Luiza Belli, F. S. Machado, L. G. R. Pereira, T. R. Tomich, Wanessa A. Carvalho, Rodrigo Silva, Alessandra L. Voorsluys, David Vanni Jacob, M. M. Campos
Software Mentions: 5
Published: over 5 years ago

10.1016/j.chom.2020.01.004

Bacteriophages Isolated from Stunted Children Can Regulate Gut Bacterial Communities in an Age-Specific Manner
Cited by: 79
Author(s): Mohammadali Khan Mirzaei, Anik Ashfaq Khan, Prakash Ghosh, Zofia E. Taranu, Mariia Taguer, Jinlong Ru, Rajashree Chowdhury, Md. Mamun Kabir, Li Deng, Dinesh Mondal, Corinne F. Maurice
Software Mentions: 5
Published: over 6 years ago

10.1016/j.xcrm.2020.100039

Human Tumor-Infiltrating MAIT Cells Display Hallmarks of Bacterial Antigen Recognition in Colorectal Cancer
Cited by: 27
Author(s): Shamin Li, Yannick Simoni, Étienne Becht, Chiew Yee Loh, Naisi Li, Daniel M. Lachance, Si-Lin Koo, Teck Por Lim, Emile Tan, Ronnie Mathew, Andrew Nguyen, Justin Golovato, Julia D. Berkson, Martin Prlic, Bernett Lee, Samuel S. Minot, Niranjan Nagarajan, Neelendu Dey, Daniel S.W. Tan, Iain Bee Huat Tan, Evan W. Newell
Software Mentions: 5
Published: over 6 years ago

10.1016/j.cels.2021.05.005

A time-resolved proteomic and prognostic map of COVID-19
Cited by: 106
Author(s): Vadim Demichev, Pinkus Tober‐Lau, Oliver Lemke, Tatiana Nazarenko, Charlotte Thibeault, Harry J. Whitwell, Annika Röhl, Anja Freiwald, Łukasz Szyrwiel, Daniela Ludwig, Clara Correia‐Melo, Simran Kaur Aulakh, Elisa T Helbig, Paula Stubbemann, Lena J Lippert, Nana‐Maria Grüning, Oleg Blyuss, Spyros Vernardis, Matthew White, Christoph B. Messner, Michael Joannidis, Thomas Sonnweber, Sebastian Klein, Alex Pizzini, Yvonne Wohlfarter, Sabina Sahanic, Richard Hilbe, Benedikt Schaefer, Sonja Wagner, Mirja Mittermaier, Felix Machleidt, Carmen García, Christoph Ruwwe‐Glösenkamp, Tilman Lingscheid, Laure Bosquillon de Jarcy, Miriam Stegemann, Moritz Pfeiffer, Linda Jürgens, Sophy Denker, Daniel Zickler, Philipp Enghard, Aleksej Zelezniak, Archie Campbell, Caroline Hayward, David J. Porteous, Riccardo E. Marioni, Alexander Uhrig, Holger Müller-Redetzky, Heinz Zoller, Judith Löffler‐Ragg
Software Mentions: 5
Published: about 5 years ago

10.3390/ijms22042046

Dysregulated Provision of Oxidisable Substrates to the Mitochondria in ME/CFS Lymphoblasts
Cited by: 20
Author(s): Daniel Missailidis, Oana Sanislav, Claire Y. Allan, Paige K. Smith, Sarah J. Annesley, Paul R. Fisher
Software Mentions: 5
Published: over 5 years ago

10.3390/cells8101196

Genome-Wide Distribution of Nascent Transcripts in Sperm DNA, Products of a Late Wave of General Transcription
Cited by: 6
Author(s): Leila Kianmehr, Homayoun Khazali, Hassan Rajabi‐Maham, Ali Sharifi‐Zarchi, François Cuzin, Minoo Rassoulzadegan
Software Mentions: 5
Published: almost 7 years ago

10.1186/1868-7083-6-4

Differences in smoking associated DNA methylation patterns in South Asians and Europeans
Cited by: 227
Author(s): Hannah R Elliott, Therese Tillin, Wendy L. McArdle, Karen Ho, Aparna Duggirala, Tim Frayling, George Davey Smith, Alun D. Hughes, Nish Chaturvedi, Caroline L Relton
Software Mentions: 5
Published: over 12 years ago

10.1186/s13148-016-0234-1

Amnion as a surrogate tissue reporter of the effects of maternal preeclampsia on the fetus
Cited by: 8
Author(s): Masako Suzuki, Ryo Maekawa, Nicole E. Patterson, David M. Reynolds, Brent Calder, Sandra E. Reznik, Hye Heo, Francine Einstein, John M. Greally
Software Mentions: 5
Published: about 10 years ago

10.1016/j.ctro.2020.04.004

[18F]-HX4 PET/CT hypoxia in patients with squamous cell carcinoma of the head and neck treated with chemoradiotherapy: Prognostic results from two prospective trials
Cited by: 12
Author(s): Sebastian Sanduleanu, Olga Hamming‐Vrieze, Frederik Wesseling, Aniek J.G. Even, Frank Hoebers, Ann Hoeben, Wouter V. Vogel, Margot E.T. Tesselaar, Daniel Parvin, Harry Bartelink, Philippe Lambin
Software Mentions: 5
Published: about 6 years ago

10.1371/journal.pone.0204963

Eye behavior does not adapt to expected visual distraction during internally directed cognition
Cited by: 15
Author(s): Sonja Annerer‐Walcher, Christof Körner, Mathias Benedek
Software Mentions: 5
Published: almost 8 years ago

10.1371/journal.pone.0256568

The absence of fans removes the home advantage associated with penalties called by National Hockey League referees
Cited by: 6
Author(s): Joël Guérette, Caroline Blais, Daniel Fiset
Software Mentions: 5
Published: about 5 years ago

10.1038/s42003-021-01985-7

Global climate and nutrient controls of photosynthetic capacity
Cited by: 18
Author(s): Yunke Peng, Keith J. Bloomfield, Lucas A. Cernusak, Tomas F. Domingues, Iain Colin Prentice
Software Mentions: 5
Published: over 5 years ago

10.1038/s42003-021-01690-5

Development of a robust protocol for the characterization of the pulmonary microbiota
Cited by: 6
Author(s): Nathan Dumont-Leblond, Marc Veillette, Christine Racine, Philippe Joubert, Caroline Duchaine
Software Mentions: 5
Published: over 5 years ago

10.1016/j.csbj.2021.07.020

MyoData: An expression knowledgebase at single cell/nucleus level for the discovery of coding-noncoding RNA functional interactions in skeletal muscle
Cited by: 3
Author(s): Davide Corso, Francesco Chemello, Enrico Alessio, Ilenia Urso, Giulia Ferrarese, Martina Bazzega, Chiara Romualdi, Gerolamo Lanfranchi, Gabriele Sales, Stefano Cagnin
Software Mentions: 5
Published: over 5 years ago

10.3389/fmicb.2020.00925

Disentangling Large- and Small-Scale Abiotic and Biotic Factors Shaping Soil Microbial Communities in an Alpine Cushion Plant System
Cited by: 19
Author(s): Chenyue Wang, Richard Michalet, Ziyang Liu, Xingpei Jiang, Xiangtai Wang, Gaosen Zhang, Lu An, Shuyan Chen, Sa Xiao
Software Mentions: 5
Published: over 6 years ago

10.1038/s41598-021-91058-w

Vulnerability to climate change of a microendemic lizard species from the central Andes
Cited by: 4
Author(s): Alejandro Laspiur, Juan Carlos Santos, Susana Marlin Medina, Jesús E Pizarro, Eduardo Alfredo Sanabria, Barry Sinervo, Nora R. Ibargüengoytía
Software Mentions: 5
Published: over 5 years ago

10.3389/fmicb.2021.659179

Investigation of Spaceflight Induced Changes to Astronaut Microbiomes
Cited by: 25
Author(s): Michael D. Morrison, James B. Thissen, Fathi Karouia, Satish K. Mehta, Camilla Urbaniak, Kasthuri Venkateswaran, David J. Smith, Crystal Jaing
Software Mentions: 5
Published: over 5 years ago

10.3389/fmolb.2021.609865

Development and Validation of a Prognostic Gene Signature in Clear Cell Renal Cell Carcinoma
Cited by: 7
Author(s): Chuanchuan Zhan, Zichu Wang, Chao Xu, Xiao Huang, Junzhou Su, Bisheng Chen, Mingshan Wang, Zhihong Qi, Péter Bai
Software Mentions: 5
Published: over 5 years ago

10.3389/fninf.2014.00076

Limits to high-speed simulations of spiking neural networks using general-purpose computers
Cited by: 50
Author(s): Friedemann Zenke, Wulfram Gerstner
Software Mentions: 5
Published: almost 12 years ago

10.3389/fninf.2020.563669

NeuroRA: A Python Toolbox of Representational Analysis From Multi-Modal Neural Data
Cited by: 21
Author(s): Zitong Lu, Yixuan Ku
Software Mentions: 5
Published: over 5 years ago

10.3389/fneur.2020.546744

LesionQuant for Assessment of MRI in Multiple Sclerosis—A Promising Supplement to the Visual Scan Inspection
Cited by: 7
Author(s): Synne Brune, Einar August Høgestøl, Vanja Cengija, Pål Berg‐Hansen, Piotr Sowa, Gro Owren Nygaard, Hanne F. Harbo, Mona K. Beyer
Software Mentions: 5
Published: over 5 years ago

10.1038/s41598-021-89926-6

Smoke from regional wildfires alters lake ecology
Cited by: 13
Author(s): Facundo Scordo, Sudeep Chandra, Erin Suenaga, Suzanne J. Kelson, Joshua Culpepper, Lucia Scaff, Flavia Tromboni, Timothy J. Caldwell, Carina Seitz, Juan Esteban Fiorenza, Craig E. Williamson, Steven Sadro, Kevin C. Rose, Simon R. Poulson
Software Mentions: 5
Published: over 5 years ago

10.3389/fnins.2020.620723

Spatiotemporal Processing of Bimodal Odor Lateralization in the Brain Using Electroencephalography Microstates and Source Localization
Cited by: 2
Author(s): Christine Ida Hucke, Rebekka Heinen, Marlene Pacharra, Edmund Wascher, Christoph van Thriel
Software Mentions: 5
Published: over 5 years ago

10.1038/s41598-021-86070-z

A flexible microfluidic system for single-cell transcriptome profiling elucidates phased transcriptional regulators of cell cycle
Cited by: 7
Author(s): Karen Davey, Daniel Wong, Filip A. Konopacki, Eugene Kwa, Tony Ly, Heike Fiegler, Christopher R. Sibley
Software Mentions: 5
Published: over 5 years ago

10.3389/fpls.2018.00987

Genome Scans Reveal Homogenization and Local Adaptations in Populations of the Soybean Cyst Nematode
Cited by: 6
Author(s): Anne-Frédérique Gendron St-Marseille, Étienne Lord, Pierre-Yves Véronneau, Jacques Brodeur, Benjamin Mimee
Software Mentions: 5
Published: about 8 years ago

10.3389/fpls.2018.01698

Geography and Environment Shape Landscape Genetics of Mediterranean Alpine Species Silene ciliata Poiret. (Caryophyllaceae)
Cited by: 15
Author(s): Javier Morente‐López, Cristina García, Carlos Lara‐Romero, Alfredo García‐Fernández, David Draper, J. M. Iriondo
Software Mentions: 5
Published: almost 8 years ago

10.3389/fpls.2020.604938

Multiple Small-Effect Alleles of Indica Origin Enhance High Iron-Associated Stress Tolerance in Rice Under Field Conditions in West Africa
Cited by: 8
Author(s): Giovanni Melandri, Mouritala Sikirou, Juan David Arbelaez, Afeez Shittu, Vimal Kumar Semwal, Kadougoudiou Abdourasmane Konate, A. T. Maji, Steven A. Ngaujah, Inoussa Akintayo, Vishnu Govindaraj, Yuxin Shi, Francisco Agosto-Perez, Anthony J. Greenberg, G. N. Atlin, R. Venuprasad, Susan R. McCouch
Software Mentions: 5
Published: over 5 years ago

10.3389/fpls.2019.00214

Root-Associated Fungal Communities From Two Phenologically Contrasting Silver Fir (Abies alba Mill.) Groups of Trees
Cited by: 18
Author(s): Tina Unuk, Tijana Martinović, Domen Finžgar, Nataša Šibanc, Tine Grebenc, Hojka Kraigher
Software Mentions: 5
Published: over 7 years ago

10.3389/fpls.2020.00086

Parenchyma Abundance in Wood of Evergreen Trees Varies Independently of Nutrients
Cited by: 12
Author(s): Martyna M. Kotowska, Ian J. Wright, Mark Westoby
Software Mentions: 5
Published: over 6 years ago