Projects: pypi: songbird
https://packages.ecosyste.ms/registries/pypi.org/packages/songbird
Vanilla regression methods for microbiome differential abundance analysis
11 versions
Latest release: almost 6 years ago
72 downloads last month
Enhanced Analysis
Educational Contributors:
mfedarko@ucsd.edu
garmstrong@colgate.edu
mfedarko@umd.edu
jmorton@eng.ucsd.edu
Repository Activity:
Repository Owner:
Jamie Morton (user)
Machine learning + Multi-omics
Machine learning + Multi-omics
README Analysis:
ArXiv Preprint
Science Score: 100/100
Starting Score: 100 points
Bonuses:
-
+80
Educational commit emails
4 contributors with educational email addresses -
+12
Science terms in README
6 scientific terms found in README -
+12
Academic links
2 academic links found in README
Penalties:
-
-10
PyPI ecosystem
General-purpose ecosystem
Very Likely Science (100)
Papers Mentioning songbird 4
10.1186/s13059-020-02104-1
Assessment of statistical methods from single cell, bulk RNA-seq, and metagenomics applied to microbiome dataCited by: 57
Author(s): Matteo Calgaro, Chiara Romualdi, Levi Waldron, Davide Risso, Nicola Vitulo
Software Mentions: 17
Published: about 6 years ago
10.1186/s40168-020-00959-x
Microbiome dynamics during the HI-SEAS IV mission, and implications for future crewed missions beyond EarthCited by: 21
Author(s): Alexander Mahnert, Cyprien Verseux, Petra Schwendner, Kaisa Koskinen, Christina Kumpitsch, Marcus Blohs, Lisa Wink, Daniela Brunner, Theodora Goessler, Daniela Billi, Christine Moissl-Eichinger
Software Mentions: 5
Published: over 5 years ago
10.1128/mSystems.00116-21
Intermittent Hypoxia and Hypercapnia Alter Diurnal Rhythms of Luminal Gut Microbiome and MetabolomeCited by: 25
Author(s): Celeste Allaband, Amulya Lingaraju, Cameron Martino, Baylee J. Russell, Anupriya Tripathi, Orit Poulsen, Ana Carolina Dantas Machado, Dan Zhou, Jin Xue, Emmanuel O. Elijah, Atul Malhotra, Pieter C. Dorrestein, Rob Knight, Gabriel G. Haddad, Amir Zarrinpar
Software Mentions: 4
Published: about 5 years ago
10.3389/fnsys.2016.00069
Putting the “Biology” Back into “Neurobiology”: The Strength of Diversity in Animal Model Systems for Neuroscience ResearchCited by: 70
Author(s): Joyce Keifer, Cliff H. Summers
Software Mentions: 1
Published: almost 10 years ago