Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Papers: 10.1186/s13059-020-02104-1
https://doi.org/10.1186/s13059-020-02104-1
Assessment of statistical methods from single cell, bulk RNA-seq, and metagenomics applied to microbiome data
Cited by: 57
Author(s): Matteo Calgaro, Chiara Romualdi, Levi Waldron, Davide Risso, Nicola Vitulo
Published: over 4 years ago
Software Mentions 17
bioconductor: ALDEx2
Analysis Of Differential Abundance Taking Sample and Scale Variation Into AccountPapers that mentioned: 136
bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distributionPapers that mentioned: 9,583
bioconductor: edgeR
Empirical Analysis of Digital Gene Expression Data in RPapers that mentioned: 6,568
bioconductor: metagenomeSeq
Statistical analysis for sparse high-throughput sequencingPapers that mentioned: 169
bioconductor: phyloseq
Handling and analysis of high-throughput microbiome census dataPapers that mentioned: 1,702
bioconductor: zinbwave
Zero-Inflated Negative Binomial Model for RNA-Seq DataPapers that mentioned: 12
cran: corncob
Count Regression for Correlated Observations with the Beta-BinomialPapers that mentioned: 4
pypi: songbird
Vanilla regression methods for microbiome differential abundance analysisPapers that mentioned: 4