pypi: seaborn | Projects | Ecosyste.ms: Papers

10.15252/msb.20198871

Paralog dependency indirectly affects the robustness of human cells
Cited by: 40
Author(s): Rohan Dandage, Christian R. Landry
Software Mentions: 6
Published: about 5 years ago

A phenomics approach for antiviral drug discovery
Cited by: 10
Author(s): Jonne Rietdijk, Marianna Tampere, Aleksandra Pettke, Polina Georgiev, Maris Lapins, Ulrika Warpman Berglund, Ola Spjuth, Marjo-Riitta Puumalainen, Jordi Carreras-Puigvert
Software Mentions: 6
Published: over 3 years ago

10.1186/s12864-020-06821-6

On tower and checkerboard neural network architectures for gene expression inference
Cited by: 0
Author(s): Vladimír Kunc, Jǐŕı Kléma
Software Mentions: 5
Published: almost 4 years ago

10.3389/frai.2020.559617

An Interpretable Predictive Model of Vaccine Utilization for Tanzania
Cited by: 1
Author(s): R. Hariharan, Johnna Sundberg, Giacomo Gallino, Ashley Schmidt, Drew Arenth, Suvrit Sra, Benjamin Fels
Software Mentions: 5
Published: about 4 years ago

10.7554/eLife.60579

SON and SRRM2 are essential for nuclear speckle formation
Cited by: 94
Author(s): İbrahim Avşar Ilık, Michal Malszycki, Anna Katharina Lübke, Claudia Schade, David Meierhofer, Tuğçe Aktaş
Software Mentions: 5
Published: about 4 years ago

10.3389/fmicb.2020.603657

Human Papillomavirus Infections in Cervical Samples From HIV-Positive Women: Evaluation of the Presence of the Nonavalent HPV Genotypes and Genetic Diversity
Cited by: 3
Author(s): Catia Sias, Valerio Guarrasi, Claudia Minosse, Daniele Lapa, Franca Del Nonno, Maria Rosaria Capobianchi, Anna Rosa Garbuglia, Paola Del Porto, Paola Paci
Software Mentions: 5
Published: almost 4 years ago

10.3389/fnins.2021.650219

A Dissociation of Attention, Executive Function and Reaction to Difficulty: Development of the MindPulse Test, a Novel Digital Neuropsychological Test for Precise Quantification of Perceptual-Motor Decision-Making Processes
Cited by: 2
Author(s): Sandra Suárez, Bertrand Eynard, Sylvie Granon
Software Mentions: 5
Published: over 3 years ago

10.3389/fnsyn.2019.00017

Mechanisms of PTPσ-Mediated Presynaptic Differentiation
Cited by: 28
Author(s): Claire Bomkamp, Nirmala Padmanabhan, Benyamin Karimi, Yuan Ge, Jesse T. Chao, Christopher Loewen, Tabrez J. Siddiqui, Ann Marie Craig
Software Mentions: 5
Published: over 5 years ago

10.7554/eLife.58660

Global alignment and assessment of TRP channel transmembrane domain structures to explore functional mechanisms
Cited by: 37
Author(s): Katherine E. Huffer, Antoniya A. Aleksandrova, Andrés Jara-Oseguera, Lucy R. Forrest, Kenton J. Swartz
Software Mentions: 5
Published: over 4 years ago

10.3390/biomedicines9050537

The Relationship between the Strength Characteristics of Cerebral Aneurysm Walls with Their Status and Laser-Induced Fluorescence Data
Cited by: 2
Author(s): E. O. Tsibulskaya, A. I. Lipovka, А. П. Чупахин, A. V. Dubovoy, D. V. Parshin, N. A. Maslov
Software Mentions: 5
Published: over 3 years ago

10.1002/brb3.1974

Self‐administered biofeedback treatment app for pediatric migraine: A randomized pilot study
Cited by: 3
Author(s): Anker Stubberud, Mattias Linde, Eiliv Brenner, Martin Heier, Alexander Olsen, Anne Hege Aamodt, Gøril Bruvik Gravdahl, Erling Tronvik
Software Mentions: 5
Published: almost 4 years ago

10.7554/eLife.63856

Single-cell transcriptomes of developing and adult olfactory receptor neurons in Drosophila
Cited by: 60
Author(s): Colleen N. McLaughlin, Maria Brbić, Qijing Xie, Tongchao Li, Felix Horns, Sai Saroja Kolluru, Justus M. Kebschull, David Vacek, Anthony Xie, Jiefu Li, Robert C. Jones, Jure Leskovec, Stephen R. Quake, Liqun Luo, Hongjie Li
Software Mentions: 5
Published: almost 4 years ago

10.1186/s12967-019-1783-9

Mathematical models of amino acid panel for assisting diagnosis of children acute leukemia
Cited by: 9
Author(s): Zhi-Dai Liu, Tingting Zhou, Xing Han, Tingyuan Lang, Shan Liu, Penghui Zhang, Haiyan Liu, Ke-Xing Wan, Jianhua Yu, Liang Zhang, Liyan Chen, Roger W. Beuerman, Bin Peng, Lei Zhou, Lin Zou
Software Mentions: 5
Published: almost 6 years ago

10.1186/s40168-021-01119-5

Metapangenomics reveals depth-dependent shifts in metabolic potential for the ubiquitous marine bacterial SAR324 lineage
Cited by: 16
Author(s): Dominique Le Bœuf, John M. Eppley, Daniel Mende, Rex R. Malmstrom, Tanja Woyke, Edward F. DeLong
Software Mentions: 5
Published: over 3 years ago

10.1128/mBio.00521-21

Patterns of Gene Content and Co-occurrence Constrain the Evolutionary Path toward Animal Association in Candidate Phyla Radiation Bacteria
Cited by: 26
Author(s): Alexander L. Jaffe, Alex D. Thomas, Christine He, Ray Keren, Luis E. Valentin-Alvarado, Patrick Munk, Keith Bouma‐Gregson, Ibrahim Farag, Yuki Amano, Rohan Sachdeva, Patrick T. West
Software Mentions: 5
Published: about 3 years ago

10.1002/minf.202100031

ACE2‐Variants Indicate Potential SARS‐CoV‐2‐Susceptibility in Animals: A Molecular Dynamics Study
Cited by: 7
Author(s): Szymon Pach, Trung Ngoc Nguyen, Jakob Trimpert, Dušan Kunec, Nikolaus Osterrieder, Gerhard Wolber
Software Mentions: 5
Published: over 3 years ago

10.3390/antiox10081278

Vitamin C Supplementation in Healthy Individuals Leads to Shifts of Bacterial Populations in the Gut—A Pilot Study
Cited by: 29
Author(s): Antonius T. Otten, Arno R. Bourgonje, Vera Peters, Behrooz Z. Alizadeh, Gerard Dijkstra, Hermie J. M. Harmsen
Software Mentions: 5
Published: over 3 years ago

10.3390/s21093145

An Evaluation of Motion Trackers with Virtual Reality Sensor Technology in Comparison to a Marker-Based Motion Capture System Based on Joint Angles for Ergonomic Risk Assessment
Cited by: 4
Author(s): Jan P. Vox, Anika Weber, Karen Insa Wolf, Krzysztof Izdebski, Thomas Schüler, Peter König, Frank Wallhoff, Daniel Friemert
Software Mentions: 5
Published: over 3 years ago

10.18699/VJ21.002

Application of alternative <i>de novo</i> motif recognition models for analysis of structural heterogeneity of transcription factor binding sites: a case study of FOXA2 binding sites
Cited by: 3
Author(s): Anton Vitalievich Tsukanov, Victor G. Levitsky, Т. И. Меркулова
Software Mentions: 5
Published: over 3 years ago

10.3390/v12091026

Spatio-Temporal Mutational Profile Appearances of Swedish SARS-CoV-2 during the Early Pandemic
Cited by: 10
Author(s): Jiaxin Ling, Rachel A. Hickman, Jinlin Li, Xi Lu, Johanna F. Lindahl, Åke Lundkvist, Josef D. Järhult
Software Mentions: 5
Published: about 4 years ago

10.1038/s41598-021-92826-4

Validating quantitative PCR assays for cfDNA detection without DNA extraction in exercising SLE patients
Cited by: 12
Author(s): Elmo Neuberger, Alexandra Brahmer, Tobias Ehlert, Katrin Kluge, Keito F A Philippi, Simone Boedecker, Julia Weinmann‐Menke, Perikles Simon
Software Mentions: 5
Published: over 3 years ago

10.12688/wellcomeopenres.16661.2

Tracking the international spread of SARS-CoV-2 lineages B.1.1.7 and B.1.351/501Y-V2 with grinch
Cited by: 120
Author(s): Áine O’Toole, Verity Hill, Oliver G. Pybus, Alexander Watts, Isaac I Bogoch, Kamran Khan, Jane P. Messina, Houriiyah Tegally, Richard Lessells, Jennifer Giandhari, Sureshnee Pillay, Kefentse A. Tumedi, Gape Nyepetsi, Malebogo Kebabonye, Maitshwarelo I. Matsheka, Madisa Mine, Sima Tokajian, Hamad Hassan, Tamara Salloum, Georgi Merhi, Jad Koweyes, Jemma L. Geoghegan, Joep de Ligt, Xiaoyun Ren, Matthew Storey, Nikki E. Freed, Chitra Pattabiraman, Pramada Prasad, Anita Desai, Vasanthapuram Ravi, Thomas F. Schulz, Lars Steinbrück, Tanja Stadler, Antonio Parisi, Angelica Bianco, Darı́o Garcı́a de Viedma, Sergio Buenestado‐Serrano, Vítor Borges, Joana Isidro, Sílvia Duarte, João Paulo Gomes, Neta S. Zuckerman, Michal Mandelboim, Orna Mor, Torsten Seemann, Alicia Arnott, Jenny Draper, Mailie Gall, William D. Rawlinson, Ira W. Deveson, Sanmarié Schlebusch, Jamie McMahon, Lex Leong, Chuan Kok Lim, Maria Chironna, Daniela Loconsole, Antonin Bal, Laurence Josset, Edward C. Holmes, Kirsten St. George, Erica Lasek‐Nesselquist, Reina S. Sikkema, Bas B. Oude Munnink, Marion Koopmans, Mia Brytting, Vannavada Sudha Rani, S. Pavani, Teemu Smura, Albert Heim, Satu Kurkela, Massab Umair, Muhammad Salman, Barbara Bartolini, Martina Rueca, Christian Drosten, Thorsten Wolff, Olin K. Silander, Dirk Eggink, Chantal Reusken, Harry Vennema, Aekyung Park, Christine V. F. Carrington, Nikita Sahadeo, Michael J. Carr, Gabo Gonzalez, Search Alliance San Diego, SeqCOVID-Spain, Túlio de Oliveira, Nuno Rodrigues Faria, Andrew Rambaut, Moritz U. G. Kraemer
Software Mentions: 5
Published: about 3 years ago

10.1038/s41598-021-87064-7

Predicting the clinical management of skin lesions using deep learning
Cited by: 16
Author(s): Kumar Abhishek, Jeremy Kawahara, Ghassan Hamarneh
Software Mentions: 5
Published: over 3 years ago

10.7717/peerj.8871

Data-driven classification of the certainty of scholarly assertions
Cited by: 4
Author(s): Mario Prieto, Helena F. Deus, Anita de Waard, Erik Schultes, Beatriz García-Jiménez, Mark D. Wilkinson
Software Mentions: 5
Published: over 4 years ago

10.7717/peerj-cs.437

Classification model for accuracy and intrusion detection using machine learning approach
Cited by: 24
Author(s): Arushi Agarwal, Purushottam Sharma, Mohammed Alshehri, Ahmed A. Mohamed, Osama Alfarraj
Software Mentions: 5
Published: over 3 years ago

10.1371/journal.pbio.3000877

High-throughput mapping of the phage resistance landscape in E. coli
Cited by: 82
Author(s): Vivek K. Mutalik, Benjamin A. Adler, Harneet S. Rishi, Denish Piya, Crystal Zhong, Britt Koskella, Elizabeth Kutter, Richard Calendar, Pavel S. Novichkov, Morgan N. Price, Adam M. Deutschbauer, Adam P. Arkin
Software Mentions: 5
Published: about 4 years ago

10.1371/journal.pcbi.1008889

Building blocks and blueprints for bacterial autolysins
Cited by: 9
Author(s): Spencer J. Mitchell, Deeptak Verma, Karl E. Griswold, Chris Bailey‐Kellogg
Software Mentions: 5
Published: over 3 years ago

10.21105/joss.00934

q2-sample-classifier: machine-learning tools for microbiome classification and regression
Cited by: 105
Author(s): Nicholas A. Bokulich, Matthew R. Dillon, Evan Bolyen, Benjamin Kaehler, Gavin A. Huttley, J. Gregory Caporaso
Software Mentions: 5
Published: about 6 years ago

10.1371/journal.pcbi.1004568

Path Similarity Analysis: A Method for Quantifying Macromolecular Pathways
Cited by: 43
Author(s): Sean L. Seyler, Avishek Kumar, M. F. Thorpe, Oliver Beckstein
Software Mentions: 5
Published: about 9 years ago

10.1371/journal.pcbi.1007636

Structural diversity of B-cell receptor repertoires along the B-cell differentiation axis in humans and mice
Cited by: 23
Author(s): Aleksandr Kovaltsuk, Matthew I. J. Raybould, Wing Ki Wong, Claire Marks, Sebastian Kelm, James Snowden, Johannes Trück, Charlotte M. Deane
Software Mentions: 5
Published: almost 5 years ago

10.1371/journal.pntd.0009306

The transcriptional landscape of Venezuelan equine encephalitis virus (TC-83) infection
Cited by: 4
Author(s): Zhiyuan Yao, Fabio Zanini, Sathish Kumar, Marwah Karim, Sirle Saul, Nishank Bhalla, Nuttada Panpradist, Avery Muniz, Aarthi Narayanan, Stephen R. Quake, Shirit Einav
Software Mentions: 5
Published: over 3 years ago

10.1038/s41598-019-45995-2

Temporal Stability of the Ruminal Bacterial Communities in Beef Steers
Cited by: 27
Author(s): Brooke A. Clemmons, Cameron Martino, Liesel G Schneider, Josh Lefler, Mallory Embree, Phillip R. Myer
Software Mentions: 5
Published: over 5 years ago

10.1038/s41598-019-39468-9

Flexible updating of dynamic knowledge structures
Cited by: 17
Author(s): Franziska R. Richter, Paul M. Bays, Priyanga Jeyarathnarajah, Jon S. Simons
Software Mentions: 5
Published: almost 6 years ago

10.1371/journal.pone.0210028

LittleBrain: A gradient-based tool for the topographical interpretation of cerebellar neuroimaging findings
Cited by: 24
Author(s): Xavier Guell, Mathias Goncalves, Jakub Kaczmarzyk, John D. E. Gabrieli, Jeremy D. Schmahmann, Samik Ghosh
Software Mentions: 5
Published: almost 6 years ago

10.3390/ijms22031073

Machine Learning Analysis of Longevity-Associated Gene Expression Landscapes in Mammals
Cited by: 6
Author(s): Anton Kulaga, Eugen Ursu, Dmitri Toren, Vladyslava Tyshchenko, Rodrigo Guinea, Malvina Pushkova, Vadim E. Fraifeld, Robi Tăcutu
Software Mentions: 5
Published: almost 4 years ago

10.1016/j.cell.2021.04.039

Microbial exposure during early human development primes fetal immune cells
Cited by: 124
Author(s): A. N. Mishra, Ghee Chuan Lai, Jing Yao Leong, Thet Tun Aung, Noam Shental, Aviva Rotter-Maskowitz, Edwin Shepherdson, Gurmit Singh Naranjan Singh, Rhea Pai, Adhika Shanti, Richard L. Wong, Andrea Lee, Costerwell Khyriem, Charles Antoine Dutertre, Svetoslav Chakarov, Kandhadayar G. Srinivasan, Nurhidaya Binte Shadan, Xiao Meng Zhang, Shabnam Khalilnezhad, Fabien Cottier, Alrina Shin Min Tan, Gillian Low, Phyllis Chen, Yiping Fan, Pei Xiang Hor, Avery Khoo May Lee, Mahesh Choolani, David Vermijlen, Ankur Sharma, Garold Fuks, Ravid Straussman, Norman Pavelka, Benoît Malleret, Naomi McGovern, Salvatore Albani, Jerry Kok Yen Chan, Florent Ginhoux
Software Mentions: 5
Published: over 3 years ago

10.1016/j.celrep.2018.03.046

Machine Learning Detects Pan-cancer Ras Pathway Activation in The Cancer Genome Atlas
Cited by: 111
Author(s): Gregory P. Way, Francisco Sanchez‐Vega, Konnor La, Joshua Armenia, Walid K. Chatila, Augustin Luna, Chris Sander, Andrew D. Cherniack, Deqin Ma, Giovanni Ciriello, Nikolaus Schultz, Yolanda Sánchez, Casey S. Greene
Software Mentions: 5
Published: over 6 years ago

10.3390/cells9102283

Gut Microbiome Changes in Patients with Active Left-Sided Ulcerative Colitis after Fecal Microbiome Transplantation and Topical 5-aminosalicylic Acid Therapy
Cited by: 34
Author(s): Dagmar Schierová, Jan Březina, Jakub Mrázek, K. Fliegerová, Simona Kvasnová, Lukáš Bajer, Pavel Drastich
Software Mentions: 5
Published: about 4 years ago

10.3390/jcm10040892

Spinal Cord Morphology in Degenerative Cervical Myelopathy Patients; Assessing Key Morphological Characteristics Using Machine Vision Tools
Cited by: 9
Author(s): Kalum Ost, W. Bradley Jacobs, Nathan Evaniew, Julien Cohen‐Adad, David W. Anderson, David W. Cadotte
Software Mentions: 5
Published: over 3 years ago

10.3390/ijms21020471

The Influence of Met Receptor Level on HGF-Induced Glycolytic Reprogramming in Head and Neck Squamous Cell Carcinoma
Cited by: 17
Author(s): Verena Boschert, Nicola Klenk, Alexander Abt, Sudha Janaki Raman, Markus Fischer, Roman C. Brands, Axel Seher, Christian Linz, Urs Müller‐Richter, Thorsten Bischler, Stefan Hartmann
Software Mentions: 5
Published: almost 5 years ago

10.1038/s42003-021-02116-y

DNA methylation changes during long-term in vitro cell culture are caused by epigenetic drift
Cited by: 22
Author(s): Julia Franzen, Theodoros Georgomanolis, Anton Selich, Chao-Chung Kuo, Reinhard Stöger, Lilija Brant, Melita Sara Mulabdić, Eduardo Fernández-Rebollo, Clara Grezella, Alina Ostrowska, Matthias Begemann, Miloš Nikolić, Björn Rath, Anthony D. Ho, Michael Rothe, Axel Schambach, Argyris Papantonis, Wolfgang Wagner
Software Mentions: 5
Published: over 3 years ago

10.1038/s42003-021-02566-4

Pseudomonas aeruginosa adapts to octenidine via a combination of efflux and membrane remodelling
Cited by: 7
Author(s): Lucy J. Bock, Philip M. Ferguson, Maria Clarke, Vichayanee Pumpitakkul, Matthew E. Wand, Paul-Enguerrand Fady, Leanne Allison, Roland A. Fleck, Matthew J. Shepherd, A. James Mason, J. Mark Sutton
Software Mentions: 5
Published: about 3 years ago

10.3390/diagnostics11081361

GIST and Ghrelin: To Be or Not to Be?
Cited by: 2
Author(s): Iuliana Spiridon, Delia Ciobanu, Simona Eliza Giușcă, Dan Ferariu, I Pleşcă, Irina Draga Căruntu
Software Mentions: 5
Published: over 3 years ago

10.1140/epjds/s13688-021-00270-1

Behaviours and attitudes in response to the COVID-19 pandemic: insights from a cross-national Facebook survey
Cited by: 48
Author(s): Daniela Perrotta, André Grow, Francesco Rampazzo, Jorge Cimentada, Emanuele Del Fava, Sofia Gil‐Clavel, Emilio Zagheni
Software Mentions: 5
Published: over 3 years ago

10.3390/nu13093195

An Innovative Machine Learning Approach to Predict the Dietary Fiber Content of Packaged Foods
Cited by: 14
Author(s): Tazman Davies, Jimmy Chun Yu Louie, Tailane Scapin, Simone Pettigrew, Jason Wu, Matti Marklund, Daisy H. Coyle
Software Mentions: 4
Published: about 3 years ago

10.1186/s12915-020-00911-3

CloneSifter: enrichment of rare clones from heterogeneous cell populations
Cited by: 11
Author(s): David Feldman, FuNien Tsai, Anthony J. Garrity, Ryan O’Rourke, Lisa Brenan, Patricia Ho, Elizabeth M. Gonzalez, Silvana Konermann, Cory M. Johannessen, Rameen Beroukhim, Pratiti Bandopadhayay, Paul C. Blainey
Software Mentions: 4
Published: almost 4 years ago

10.1186/s12866-018-1341-2

The murine vaginal microbiota and its perturbation by the human pathogen group B Streptococcus
Cited by: 46
Author(s): Alison Vrbanac, Angelica M. Riestra, Alison Coady, Rob Knight, Victor Nizet, Kathryn A. Patras
Software Mentions: 4
Published: almost 6 years ago

10.1186/s12918-018-0534-5

Regulation of dual specificity phosphatases in breast cancer during initial treatment with Herceptin: a Boolean model analysis
Cited by: 7
Author(s): Petronela Buiga, Ari Elson, Lydia Tabernero, Jean-Marc Schwartz
Software Mentions: 4
Published: over 6 years ago

10.1186/s13062-018-0211-z

Profiling microbial strains in urban environments using metagenomic sequencing data
Cited by: 26
Author(s): Moreno Zolfo, Francesco Asnicar, Paolo Manghi, Edoardo Pasolli, Adrian Tett, Nicola Segata
Software Mentions: 4
Published: almost 7 years ago

10.3390/metabo11090633

A Targeted Serum Metabolomics GC-MS Approach Identifies Predictive Blood Biomarkers for Retained Placenta in Holstein Dairy Cows
Cited by: 4
Author(s): Guanshi Zhang, Dawid Tobolski, Grzegorz Zwierzchowski, Rupasri Mandal, David S. Wishart, Burim N. Ametaj
Software Mentions: 4
Published: about 3 years ago

10.1002/1878-0261.12895

Benchmarking HLA genotyping and clarifying HLA impact on survival in tumor immunotherapy
Cited by: 15
Author(s): Xiangyong Li, Chi Zhou, Ke Chen, Bingding Huang, Qi Liu, Yue Hao
Software Mentions: 4
Published: almost 4 years ago

10.7717/peerj.8417

16S rRNA metagenomic analysis of the bacterial community associated with turf grass seeds from low moisture and high moisture climates
Cited by: 17
Author(s): Qiang Chen, William A. Meyer, Qiuwei Zhang, James F. White
Software Mentions: 4
Published: almost 5 years ago

10.1371/journal.pcbi.1008833

PDKit: A data science toolkit for the digital assessment of Parkinson’s Disease
Cited by: 2
Author(s): Cosmin Stamate, Joan Saez Pons, David Weston, George Roussos
Software Mentions: 4
Published: over 3 years ago

10.1371/journal.pcbi.1008924

Incorporating the speciation process into species delimitation
Cited by: 48
Author(s): Jeet Sukumaran, Mark T. Holder, L. Lacey Knowles
Software Mentions: 4
Published: over 3 years ago

10.1371/journal.pgen.1009221

Short-range template switching in great ape genomes explored using pair hidden Markov models
Cited by: 10
Author(s): Conor R Walker, Aylwyn Scally, Nicola De Maio, Nick Goldman
Software Mentions: 4
Published: over 3 years ago

10.1371/journal.pgen.1009669

Genomic islands targeting dusA in Vibrio species are distantly related to Salmonella Genomic Island 1 and mobilizable by IncC conjugative plasmids
Cited by: 5
Author(s): Romain Durand, Florence Deschênes, Vincent Burrus
Software Mentions: 4
Published: over 3 years ago

10.1371/journal.pone.0243915

On transformative adaptive activation functions in neural networks for gene expression inference
Cited by: 5
Author(s): Vladimír Kunc, Jǐŕı Kléma
Software Mentions: 4
Published: almost 4 years ago

10.1371/journal.pone.0233336

Artificial intelligence may offer insight into factors determining individual TSH level
Cited by: 7
Author(s): Prasanna Santhanam, Tanmay Nath, Faiz Khan Mohammad, Rexford S. Ahima
Software Mentions: 4
Published: over 4 years ago

10.3390/cancers13030576

Cooperative Blockade of CK2 and ATM Kinases Drives Apoptosis in VHL-Deficient Renal Carcinoma Cells through ROS Overproduction
Cited by: 17
Author(s): Sofía Giacosa, Catherine Pillet, Irinka Séraudie, Laurent Guyon, Yann Wallez, Caroline Roelants, Christophe Battail, Bertrand Evrard, Frédéric Chalmel, Caroline Barette, Emmanuelle Soleilhac, Marie-Odile Fauvarque, Q. Franquet, Clément Sarrazin, N. Peilleron, G. Fiard, Jean-Alexandre Long, Jean‐Luc Descotes, Claude Cochet, Odile Filhol
Software Mentions: 4
Published: almost 4 years ago

10.3390/cancers12123844

Deep Learning Prediction of Cancer Prevalence from Satellite Imagery
Cited by: 6
Author(s): Jean‐Emmanuel Bibault, Maxime Bassenne, Hongyi Ren, Xing Li
Software Mentions: 4
Published: almost 4 years ago

10.1038/s41419-020-03232-z

Molecular subtype-specific responses of colon cancer cells to the SMAC mimetic Birinapant
Cited by: 12
Author(s): Michael Fichtner, Emir Bozkurt, Manuela Salvucci, Christopher McCann, Katherine McAllister, Luise Halang, Heiko Düßmann, Sinéad Kinsella, Nyree Crawford, Tamas Sessler, Daniel B. Longley, Jochen H M Prehn
Software Mentions: 4
Published: almost 4 years ago

10.1038/s42003-021-02361-1

Multiplexed imaging analysis of the tumor-immune microenvironment reveals predictors of outcome in triple-negative breast cancer
Cited by: 21
Author(s): Aalok Patwa, Rikiya Yamashita, Long Jin, Tyler Risom, Michael Angelo, Leeat Keren, Daniel L. Rubin
Software Mentions: 4
Published: over 3 years ago

10.1016/j.dib.2016.06.049

Data on the verification and validation of segmentation and registration methods for diffusion MRI
Cited by: 1
Author(s): Oscar Estéban, Dominique Zosso, Alessandro Daducci, M. Bach Cuadra, María J. Ledesma-Carbayo, Jean‐Philippe Thiran, A. Santos
Software Mentions: 4
Published: about 8 years ago

10.3390/diagnostics11050738

Automated CT Lung Density Analysis of Viral Pneumonia and Healthy Lungs Using Deep Learning-Based Segmentation, Histograms and HU Thresholds
Cited by: 8
Author(s): Andrej Romanov, Michael Bach, Shan Yang, Fabian Franzeck, Gregor Sommer, Constantin Anastasopoulos, Jens Bremerich, Bram Stieltjes, Thomas Weikert, Alexander Sauter
Software Mentions: 4
Published: over 3 years ago

10.1016/j.enzmictec.2020.109592

Identification and catalytic properties of new epoxide hydrolases from the genomic data of soil bacteria
Cited by: 9
Author(s): Gorjan Stojanovski, Dragana Dobrijevic, Helen C. Hailes, John M. Ward
Software Mentions: 4
Published: about 4 years ago

10.3389/fimmu.2020.552596

Toward a Better Understanding of Bioassays for the Development of Biopharmaceuticals by Exploring the Structure-Antibody-Dependent Cellular Cytotoxicity Relationship in Human Primary Cells
Cited by: 2
Author(s): Sébastien Wieckowski, Cécile Avenal, Arturo V. Orjalo, Daniel Gygax, Florian Cymer
Software Mentions: 4
Published: about 4 years ago

10.3389/fpls.2019.01249

Finding New Cell Wall Regulatory Genes in Populus trichocarpa Using Multiple Lines of Evidence
Cited by: 9
Author(s): Anna Furches, David Kainer, Deborah Weighill, Annabel Large, Piet Jones, Angelica M. Walker, Jonathon Romero, João Gabriel Felipe Machado Gazolla, Wayne Joubert, Manesh Shah, Jared Streich, Priya Ranjan, Jeremy Schmutz, Avinash Sreedasyam, David Macaya‐Sanz, Nan Zhao, Madhavi Z. Martin, Xiaolan Rao, Richard A. Dixon, Stephen P. DiFazio, Timothy J. Tschaplinski, Jay Chen, Gerald A. Tuskan, Daniel Jacobson
Software Mentions: 4
Published: about 5 years ago

10.3389/fpubh.2020.580327

Global Forecasting Confirmed and Fatal Cases of COVID-19 Outbreak Using Autoregressive Integrated Moving Average Model
Cited by: 42
Author(s): Debabrata Dansana, Raghvendra Kumar, Janmejoy Das Adhikari, Mans Mohapatra, Rohit Sharma, Ishaani Priyadarshini, Dac‐Nhuong Le
Software Mentions: 4
Published: about 4 years ago

10.7150/jca.59933

Hallmark microRNA signature in liquid biopsy identifies hepatocellular carcinoma and differentiates it from liver metastasis
Cited by: 6
Author(s): Vernon G. Wong, Ming-In Wong, Chi-Tat Lam, Maria Li Lung, Ka-On Lam, Victor Lee
Software Mentions: 4
Published: almost 4 years ago

10.1038/s41598-019-39773-3

Environmental structure drives resistance to phages and antibiotics during phage therapy and to invading lysogens during colonisation
Cited by: 34
Author(s): Jorge Moura de Sousa, Eduardo P. C. Rocha
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-019-40883-1

Insight into the genome and brackish water adaptation strategies of toxic and bloom-forming Baltic Sea Dolichospermum sp. UHCC 0315
Cited by: 13
Author(s): Jonna Teikari, Rafael Vicentini Popin, Songjun Hou, Matti Wahlsten, Wolfgang R. Hess, Kaarina Sivonen
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-019-47857-3

Real-Time Selective Sequencing with RUBRIC: Read Until with Basecall and Reference-Informed Criteria
Cited by: 37
Author(s): Harrison Edwards, Raga Krishnakumar, Anupama Sinha, Sara W. Bird, Kamlesh D. Patel, Michael Bartsch
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-019-53599-z

Effects of sampling strategy and DNA extraction on human skin microbiome investigations
Cited by: 67
Author(s): Rie Dybboe Bjerre, Luisa W. Hugerth, Fredrik Boulund, Maike Seifert, Jeanne Duus Johansen, Lars Engstrand
Software Mentions: 4
Published: about 5 years ago

10.1038/s41598-019-55978-y

Rumen Bacteria and Serum Metabolites Predictive of Feed Efficiency Phenotypes in Beef Cattle
Cited by: 30
Author(s): Brooke A. Clemmons, Cameron Martino, Joshua B. Powers, Shawn R. Campagna, Brynn H. Voy, Dallas R. Donohoe, James Gaffney, Mallory Embree, Phillip R. Myer
Software Mentions: 4
Published: almost 5 years ago

10.1038/s41598-020-64870-z

Correlation-centred variable selection of a gene expression signature to predict breast cancer metastasis
Cited by: 5
Author(s): Shiori Hikichi, Masahiro Sugimoto, Masaru Tomita
Software Mentions: 4
Published: over 4 years ago

10.1038/s41598-020-76635-9

Early and accurate detection and diagnosis of heart disease using intelligent computational model
Cited by: 56
Author(s): Yar Muhammad, Muhammad Tahir, Maqsood Hayat, Kil To Chong
Software Mentions: 4
Published: about 4 years ago

10.3390/s19235310

Robust Cylindrical Panorama Stitching for Low-Texture Scenes Based on Image Alignment Using Deep Learning and Iterative Optimization
Cited by: 9
Author(s): Kang Lai, Yingmei Wei, Jie Jiang, Yi Xie
Software Mentions: 4
Published: almost 5 years ago

10.3390/sports9050068

An Analysis of Sport-Specific Pain Symptoms through Inter-Individual Training Differences in CrossFit
Cited by: 3
Author(s): Maria Alexandra Bernstorff, Norman Schumann, Nader Maai, Thomas A. Schildhauer, Matthias Königshausen
Software Mentions: 4
Published: over 3 years ago

10.7150/thno.55676

A panel of selected serum protein biomarkers for the detection of aggressive prostate cancer
Cited by: 12
Author(s): Jin Song, Shiyong Ma, Lori J. Sokoll, Rodrigo Vargas Eguez, Naseruddin Höti, Hui Zhang, Phaedre Mohr, Renu Dua, Dattatraya Patil, Kristen Douglas May, Sierra Williams, Rebecca S. Arnold, Martin G. Sanda, Daniel W. Chan, Zhen Zhang
Software Mentions: 4
Published: almost 4 years ago

10.1128/mSystems.00211-19

Identification of Primary Antimicrobial Resistance Drivers in Agricultural Nontyphoidal Salmonella enterica Serovars by Using Machine Learning
Cited by: 16
Author(s): Finlay Maguire, Muhammad Attiq Rehman, Catherine D. Carrillo, Moussa S. Diarra, Robert G. Beiko
Software Mentions: 4
Published: about 5 years ago

10.1128/mSystems.00340-20

Evaluating Organism-Wide Changes in the Metabolome and Microbiome following a Single Dose of Antibiotic
Cited by: 5
Author(s): Alison Vrbanac, Kathryn A. Patras, Alan K. Jarmusch, Robert H. Mills, Samuel R. Shing, Robert A. Quinn, Fernando Vargas, Kyung E. Rhee, Pieter C. Dorrestein, Rob Knight, Victor Nizet
Software Mentions: 4
Published: about 4 years ago

10.2196/16113

Deep Learning Approach for Imputation of Missing Values in Actigraphy Data: Algorithm Development Study
Cited by: 14
Author(s): Jong-Hwan Jang, Junggu Choi, Hyun Woong Roh, Sang Joon Son, Chang Hyung Hong, Eun Young Kim, Tae Young Kim, Dukyong Yoon
Software Mentions: 4
Published: over 4 years ago

10.7554/eLife.63372

Coherent theta activity in the medial and orbital frontal cortices encodes reward value
Cited by: 11
Author(s): Linda M. Amarante, Mark Laubach
Software Mentions: 4
Published: about 3 years ago

10.3390/ijms22147415

Compatibility of Distinct Label-Free Proteomic Workflows in Absolute Quantification of Proteins Linked to the Oocyte Quality in Human Follicular Fluid
Cited by: 5
Author(s): Aleksandra Lewandowska, Anna Fel, Marcel Thiel, Paulina Czaplewska, Krzysztof Łukaszuk, Jacek R. Wiśniewski, Stanisław Ołdziej
Software Mentions: 4
Published: over 3 years ago

10.1523/ENEURO.0378-20.2021

Time Course of Alterations in Adult Spinal Motoneuron Properties in the SOD1(G93A) Mouse Model of ALS
Cited by: 11
Author(s): Seoan Huh, C. J. Heckman, Marin Manuel
Software Mentions: 4
Published: over 3 years ago

10.1371/journal.pone.0166532

Accuracy and Reliability of the Kinect Version 2 for Clinical Measurement of Motor Function
Cited by: 177
Author(s): Karen Otte, Bastian Kayser, Sebastian Mansow-Model, Julius Verrel, Friedemann Paul, Alexander U. Brandt, Tanja Schmitz‐Hübsch
Software Mentions: 3
Published: about 8 years ago

10.3389/fmicb.2021.651461

Exploring the Antibiotic Resistance Burden in Livestock, Livestock Handlers and Their Non-Livestock Handling Contacts: A One Health Perspective
Cited by: 13
Author(s): Rachel A. Hickman, Thongpan Leangapichart, Kamonwan Lunha, Jatesada Jiwakanon, Sunpetch Angkititrakul, Ulf Magnusson, Marianne Sunde, Josef D. Järhult
Software Mentions: 3
Published: over 3 years ago

10.1038/s41598-021-93321-6

Synergistic effects of contaminants in Lombardy waters
Cited by: 2
Author(s): Caterina A. M. La Porta, Maria Rita Fumagalli, Stefano Gomarasca, Stefano Zapperi, Stefano Bocchi
Software Mentions: 3
Published: over 3 years ago

10.12688/wellcomeopenres.15853.2

PyOmeroUpload: A Python toolkit for uploading images and metadata to OMERO
Cited by: 5
Author(s): Johnny Hay, Eilidh Troup, Ivan B. N. Clark, Julian Pietsch, Tomasz Zieliński, Andrew J. Millar
Software Mentions: 3
Published: about 4 years ago

10.1186/s12864-016-3132-1

The Mycobacterium tuberculosis transcriptional landscape under genotoxic stress
Cited by: 31
Author(s): Amine Namouchi, Marta Gómez-Muñoz, Stephan A. Frye, Line Victoria Moen, Torbjørn Rognes, Tone Tønjum, Seetha V. Balasingham
Software Mentions: 3
Published: about 8 years ago

10.1371/journal.pone.0236958

Supply-side options to reduce land requirements of fully renewable electricity in Europe
Cited by: 15
Author(s): Tim Tröndle
Software Mentions: 3
Published: over 4 years ago

10.1038/s42003-020-01143-5

Host-parasite tissue adhesion by a secreted type of β-1,4-glucanase in the parasitic plant Phtheirospermum japonicum
Cited by: 26
Author(s): Ken-ichi Kurotani, Takanori Wakatake, Yasunori Ichihashi, Koji Okayasu, Yu Sawai, Satoshi Ogawa, Songkui Cui, Takamasa Suzuki, Ken Shirasu, Michitaka Notaguchi
Software Mentions: 3
Published: over 4 years ago

10.3390/s20102834

Heart Rate Variability and Accelerometry as Classification Tools for Monitoring Perceived Stress Levels—A Pilot Study on Firefighters
Cited by: 22
Author(s): Michał Meina, Ewa Ratajczak, Maria Sadowska, K. P. Rykaczewski, Joanna Dreszer, Bibianna Bałaj, S. Biedugnis, Wojciech Węgrzyński, Adam Krasuski
Software Mentions: 3
Published: over 4 years ago

10.3389/fphar.2018.00270

Uncovering the Mechanisms of Chinese Herbal Medicine (MaZiRenWan) for Functional Constipation by Focused Network Pharmacology Approach
Cited by: 36
Author(s): Tao Huang, Ziwan Ning, Dong-Dong Hu, Man Zhang, Ling Zhao, Chengyuan Lin, Linda L. D. Zhong, Zhijun Yang, Xu Hong, Zhaoxiang Bian
Software Mentions: 3
Published: over 6 years ago

10.3390/v11110988

Evolution of a Landscape Phage Library in a Mouse Xenograft Model of Human Breast Cancer
Cited by: 10
Author(s): James W. Gillespie, Liping Yang, Laura M. De Plano, Murray Stackhouse, Valery A. Petrenko
Software Mentions: 3
Published: about 5 years ago

10.15252/msb.20209530

Protein quality control and regulated proteolysis in the genome‐reduced organism <i>Mycoplasma pneumoniae</i>
Cited by: 14
Author(s): Raul Burgos, Marc Weber, Sira Martínez, María Lluch‐Senar, Luís Serrano
Software Mentions: 3
Published: almost 4 years ago

10.3390/s21134302

The Promise of Sleep: A Multi-Sensor Approach for Accurate Sleep Stage Detection Using the Oura Ring
Cited by: 57
Author(s): Marco Altini, Hannu Kinnunen
Software Mentions: 3
Published: over 3 years ago

10.1186/s12911-021-01416-x

Temporal relationship of computed and structured diagnoses in electronic health record data
Cited by: 8
Author(s): Wade Schulz, H. Patrick Young, Andreas Coppi, Bobak J. Mortazavi, Zhenqiu Lin, Raymond Jean, Harlan M. Krumholz
Software Mentions: 3
Published: almost 4 years ago

10.1038/s41598-019-50228-7

Transcriptomic analysis reveals new hippocampal gene networks induced by prolactin
Cited by: 17
Author(s): Erika Alejandra Cabrera-Reyes, América Vanoye-Carlo, Mauricio Rodríguez-Dorantes, Edgar Ricardo Vázquez-Martínez, Nadia Alejandra Rivero-Segura, Omar Collazo-Navarrete, Marco Cerbón
Software Mentions: 3
Published: about 5 years ago

10.3390/toxins12040248

Phylogenomic Analysis of Secondary Metabolism in the Toxic Cyanobacterial Genera Anabaena, Dolichospermum and Aphanizomenon
Cited by: 28
Author(s): Julia Österholm, Rafael Vicentini Popin, David P. Fewer, Kaarina Sivonen
Software Mentions: 3
Published: over 4 years ago

Projects: pypi: seaborn

Papers Mentioning seaborn 283