Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: pypi: scythe
https://packages.ecosyste.ms/registries/pypi.org/packages/scythe
Find best matching set of transcripts for one-to-one orthologous genes from two or more species
1 version
Latest release: over 10 years ago
15 downloads last month
Papers Mentioning scythe 15
10.3389/fpls.2019.00223
Infection Strategies Deployed by Botrytis cinerea, Fusarium acuminatum, and Rhizopus stolonifer as a Function of Tomato Fruit Ripening StageCited by: 56
Author(s): Stefan Petrasch, Christian J. Silva, Saskia D Mesquida-Pesci, Karina Gallegos, Casper van den Abeele, Victor Papin, Francisco Javier Fernández-Acero, Steven J. Knapp, Bárbara Blanco-Ulate
Software Mentions: 5
Published: over 5 years ago
10.1016/j.celrep.2021.108735
Specification and epigenomic resetting of the pig germline exhibit conservation with the human lineageCited by: 38
Author(s): Qifan Zhu, Fei Sang, Sarah Withey, Walfred W.C. Tang, Sabine Dietmann, Doris Klisch, Priscila Ramos‐Ibeas, Haixin Zhang, Cristina E. Requena, Petra Hájková, Matt Loose, M. Azim Surani, Ramiro Alberio
Software Mentions: 5
Published: almost 4 years ago
10.1155/2021/8880585
Gene Regulatory Network of Human GM-CSF-Secreting T Helper CellsCited by: 3
Author(s): Szabolcs Éliás, Angelika Schmidt, David Green, Jesper Tegnér
Software Mentions: 5
Published: over 3 years ago
10.1186/s12864-015-1624-z
Distinctive expansion of gene families associated with plant cell wall degradation, secondary metabolism, and nutrient uptake in the genomes of grapevine trunk pathogensCited by: 132
Author(s): Abraham Morales‐Cruz, Katherine C. H. Amrine, Bárbara Blanco-Ulate, Daniel P. Lawrence, Renaud Travadon, Philippe E. Rolshausen, Kendra Baumgartner, Dario Cantu
Software Mentions: 4
Published: over 9 years ago
10.1186/1471-2164-15-1081
Adaptive genomic structural variation in the grape powdery mildew pathogen, Erysiphe necatorCited by: 137
Author(s): Laura M. Jones, Summaira Riaz, Abraham Morales‐Cruz, Katherine C. H. Amrine, Brianna McGuire, W. D. Gubler, Michael Walker, Dario Cantu
Software Mentions: 4
Published: almost 10 years ago
10.1093/gbe/evaa094
piRNA and Transposon Dynamics in Drosophila: A Female StoryCited by: 17
Author(s): Bastien Saint-Leandre, Pierre Capy, Aurélie Hua-Van, Jonathan Filée
Software Mentions: 4
Published: over 4 years ago
10.7554/eLife.45310
A cis-carotene derived apocarotenoid regulates etioplast and chloroplast developmentCited by: 45
Author(s): Christopher I. Cazzonelli, Xin Hou, Yağiz Alagöz, John Rivers, Namraj Dhami, Jiwon Lee, Shashikanth Marri, Barry J. Pogson
Software Mentions: 4
Published: almost 5 years ago
10.1534/g3.117.039909
Whole-Genome Sequence of the Metastatic PC3 and LNCaP Human Prostate Cancer Cell LinesCited by: 45
Author(s): Inge Seim, Penny L. Jeffery, Patrick B. Thomas, Colleen C. Nelson, Lisa K. Chopin
Software Mentions: 3
Published: over 7 years ago
10.1371/journal.pone.0077147
The Fumagillin Gene Cluster, an Example of Hundreds of Genes under veA Control in Aspergillus fumigatusCited by: 45
Author(s): Sourabh Dhingra, Abigail Lind, Hsiao‐Ching Lin, Yi Tang, Antonis Rokas, Ana M. Calvo
Software Mentions: 2
Published: about 11 years ago
10.3389/fpls.2019.00654
Ovule Gene Expression Analysis in Sexual and Aposporous Apomictic Hypericum perforatum L. (Hypericaceae) AccessionsCited by: 13
Author(s): Giulio Galla, Andrea Basso, Simone Grisan, Michele Bellucci, Fulvio Pupilli, Gianni Barcaccia
Software Mentions: 1
Published: over 5 years ago
10.1534/g3.120.401365
The Complete Genome Sequence of the <i>Staphylococcus</i> Bacteriophage MetroidCited by: 1
Author(s): Adele Crane, Joy Abaidoo, Gabriella Beltran, Danielle Fry, Colleen Furey, Noe Green, Ravneet Johal, Bruno La Rosa, Catalina Lopez Jimenez, Linh Luong, Garett Maag, Jade Porche, Lauren Reyes, Aspen Robinson, Samantha Sabbara, Lucia Soto Herrera, Angelica Urquidez Negrete, Pauline Wilson, Kerry Geiler-Samerotte, Susanne Pfeifer
Software Mentions: 1
Published: about 4 years ago
10.1186/s13104-019-4843-6
A de novo transcriptome assembly for the bath sponge Spongia officinalis, adjusting for microsymbiontsCited by: 4
Author(s): Tereza Manousaki, Vasiliki Koutsouveli, Jacques Lagnel, Spyridon Kollias, Costas S. Tsigenopoulos, Christos Arvanitidis, Antoniοs Magoulas, C. Dounas, Thanos Dailianis
Software Mentions: 1
Published: almost 5 years ago
10.3389/fmicb.2020.01136
Replication of Influenza D Viruses of Bovine and Swine Origin in Ovine Respiratory Explants and Their Attachment to the Respiratory Tract of Bovine, Sheep, Goat, Horse, and SwineCited by: 12
Author(s): Eva Mazzetto, Alessio Bortolami, Alice Fusaro, Elisa Mazzacan, Silvia Maniero, Marta Vascellari, Maria Serena Beato, Eliana Schiavon, Chiara Chiapponi, Calogero Terregino, Isabella Monne, Francesco Bonfante
Software Mentions: 1
Published: over 4 years ago
10.1371/journal.pntd.0007945
Gene expression profiling of Trypanosoma cruzi in the presence of heme points to glycosomal metabolic adaptation of epimastigotes inside the vectorCited by: 7
Author(s): Márcia Cristina Paes, Francis Monique de Souza Saraiva, Natália Pereira de Almeida Nogueira, Carolina S. D. Vieira, Felipe A. Dias, Ana Rossini, Vitor Lima Coelho, Andrea Pane, Fei Sang, Marcos Alcocer
Software Mentions: 1
Published: almost 5 years ago
10.1371/journal.pbio.3000393
Single-molecule correlated chemical probing reveals large-scale structural communication in the ribosome and the mechanism of the antibiotic spectinomycin in living cellsCited by: 19
Author(s): Arnab Sengupta, Greggory M. Rice, Kevin M. Weeks
Software Mentions: 1
Published: about 5 years ago