Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: pypi: scythe

https://packages.ecosyste.ms/registries/pypi.org/packages/scythe

Find best matching set of transcripts for one-to-one orthologous genes from two or more species
1 version
Latest release: over 10 years ago
15 downloads last month

Papers Mentioning scythe 15

Infection Strategies Deployed by Botrytis cinerea, Fusarium acuminatum, and Rhizopus stolonifer as a Function of Tomato Fruit Ripening Stage
Cited by: 56
Author(s): Stefan Petrasch, Christian J. Silva, Saskia D Mesquida-Pesci, Karina Gallegos, Casper van den Abeele, Victor Papin, Francisco Javier Fernández-Acero, Steven J. Knapp, Bárbara Blanco-Ulate
Software Mentions: 5
Published: almost 6 years ago

10.1016/j.celrep.2021.108735

Specification and epigenomic resetting of the pig germline exhibit conservation with the human lineage
Cited by: 38
Author(s): Qifan Zhu, Fei Sang, Sarah Withey, Walfred W.C. Tang, Sabine Dietmann, Doris Klisch, Priscila Ramos‐Ibeas, Haixin Zhang, Cristina E. Requena, Petra Hájková, Matt Loose, M. Azim Surani, Ramiro Alberio
Software Mentions: 5
Published: almost 4 years ago

10.1155/2021/8880585

Gene Regulatory Network of Human GM-CSF-Secreting T Helper Cells
Cited by: 3
Author(s): Szabolcs Éliás, Angelika Schmidt, David Green, Jesper Tegnér
Software Mentions: 5
Published: over 3 years ago

10.1186/s12864-015-1624-z

Distinctive expansion of gene families associated with plant cell wall degradation, secondary metabolism, and nutrient uptake in the genomes of grapevine trunk pathogens
Cited by: 132
Author(s): Abraham Morales‐Cruz, Katherine C. H. Amrine, Bárbara Blanco-Ulate, Daniel P. Lawrence, Renaud Travadon, Philippe E. Rolshausen, Kendra Baumgartner, Dario Cantu
Software Mentions: 4
Published: over 9 years ago

10.1186/1471-2164-15-1081

Adaptive genomic structural variation in the grape powdery mildew pathogen, Erysiphe necator
Cited by: 137
Author(s): Laura M. Jones, Summaira Riaz, Abraham Morales‐Cruz, Katherine C. H. Amrine, Brianna McGuire, W. D. Gubler, Michael Walker, Dario Cantu
Software Mentions: 4
Published: about 10 years ago

10.1093/gbe/evaa094

piRNA and Transposon Dynamics in Drosophila: A Female Story
Cited by: 17
Author(s): Bastien Saint-Leandre, Pierre Capy, Aurélie Hua-Van, Jonathan Filée
Software Mentions: 4
Published: over 4 years ago

10.7554/eLife.45310

A cis-carotene derived apocarotenoid regulates etioplast and chloroplast development
Cited by: 45
Author(s): Christopher I. Cazzonelli, Xin Hou, Yağiz Alagöz, John Rivers, Namraj Dhami, Jiwon Lee, Shashikanth Marri, Barry J. Pogson
Software Mentions: 4
Published: almost 5 years ago

10.1534/g3.117.039909

Whole-Genome Sequence of the Metastatic PC3 and LNCaP Human Prostate Cancer Cell Lines
Cited by: 45
Author(s): Inge Seim, Penny L. Jeffery, Patrick B. Thomas, Colleen C. Nelson, Lisa K. Chopin
Software Mentions: 3
Published: over 7 years ago

10.1371/journal.pone.0077147

The Fumagillin Gene Cluster, an Example of Hundreds of Genes under veA Control in Aspergillus fumigatus
Cited by: 45
Author(s): Sourabh Dhingra, Abigail Lind, Hsiao‐Ching Lin, Yi Tang, Antonis Rokas, Ana M. Calvo
Software Mentions: 2
Published: about 11 years ago

10.3389/fpls.2019.00654

Ovule Gene Expression Analysis in Sexual and Aposporous Apomictic Hypericum perforatum L. (Hypericaceae) Accessions
Cited by: 13
Author(s): Giulio Galla, Andrea Basso, Simone Grisan, Michele Bellucci, Fulvio Pupilli, Gianni Barcaccia
Software Mentions: 1
Published: over 5 years ago

10.1534/g3.120.401365

The Complete Genome Sequence of the <i>Staphylococcus</i> Bacteriophage Metroid
Cited by: 1
Author(s): Adele Crane, Joy Abaidoo, Gabriella Beltran, Danielle Fry, Colleen Furey, Noe Green, Ravneet Johal, Bruno La Rosa, Catalina Lopez Jimenez, Linh Luong, Garett Maag, Jade Porche, Lauren Reyes, Aspen Robinson, Samantha Sabbara, Lucia Soto Herrera, Angelica Urquidez Negrete, Pauline Wilson, Kerry Geiler-Samerotte, Susanne Pfeifer
Software Mentions: 1
Published: over 4 years ago

10.1186/s13104-019-4843-6

A de novo transcriptome assembly for the bath sponge Spongia officinalis, adjusting for microsymbionts
Cited by: 4
Author(s): Tereza Manousaki, Vasiliki Koutsouveli, Jacques Lagnel, Spyridon Kollias, Costas S. Tsigenopoulos, Christos Arvanitidis, Antoniοs Magoulas, C. Dounas, Thanos Dailianis
Software Mentions: 1
Published: about 5 years ago

10.3389/fmicb.2020.01136

Replication of Influenza D Viruses of Bovine and Swine Origin in Ovine Respiratory Explants and Their Attachment to the Respiratory Tract of Bovine, Sheep, Goat, Horse, and Swine
Cited by: 12
Author(s): Eva Mazzetto, Alessio Bortolami, Alice Fusaro, Elisa Mazzacan, Silvia Maniero, Marta Vascellari, Maria Serena Beato, Eliana Schiavon, Chiara Chiapponi, Calogero Terregino, Isabella Monne, Francesco Bonfante
Software Mentions: 1
Published: over 4 years ago

10.1371/journal.pntd.0007945

Gene expression profiling of Trypanosoma cruzi in the presence of heme points to glycosomal metabolic adaptation of epimastigotes inside the vector
Cited by: 7
Author(s): Márcia Cristina Paes, Francis Monique de Souza Saraiva, Natália Pereira de Almeida Nogueira, Carolina S. D. Vieira, Felipe A. Dias, Ana Rossini, Vitor Lima Coelho, Andrea Pane, Fei Sang, Marcos Alcocer
Software Mentions: 1
Published: almost 5 years ago

10.1371/journal.pbio.3000393

Single-molecule correlated chemical probing reveals large-scale structural communication in the ribosome and the mechanism of the antibiotic spectinomycin in living cells
Cited by: 19
Author(s): Arnab Sengupta, Greggory M. Rice, Kevin M. Weeks
Software Mentions: 1
Published: over 5 years ago