Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: pypi: scipy

https://packages.ecosyste.ms/registries/pypi.org/packages/scipy

Fundamental algorithms for scientific computing in Python
93 versions
Latest release: about 1 year ago
10,709 dependent packages
64,812,363 downloads last month

Papers Mentioning scipy 1,071

10.3390/ijms21218004
MRI Radiomic Features to Predict IDH1 Mutation Status in Gliomas: A Machine Learning Approach using Gradient Tree Boosting
Cited by: 21
Author(s): Yu Sakai, Chen Yang, Shingo Kihira, Nadejda M. Tsankova, Fahad Khan, Adı́lia Hormigo, Albert Lai, Timothy F. Cloughesy, Kambiz Nael
Software Mentions: 3
Published: about 4 years ago
10.1371/journal.pcbi.1007921
Signal-to-signal neural networks for improved spike estimation from calcium imaging data
Cited by: 8
Author(s): Jilt Sebastian, Mriganka Sur, Hema A. Murthy, Mathew Magimai-Doss
Software Mentions: 3
Published: over 3 years ago
10.1371/journal.pcbi.1007822
Biophysically grounded mean-field models of neural populations under electrical stimulation
Cited by: 36
Author(s): Caglar Cakan, Klaus Obermayer
Software Mentions: 3
Published: over 4 years ago
10.1371/journal.pcbi.1006184
Interplay of multiple pathways and activity-dependent rules in STDP
Cited by: 8
Author(s): Gaëtan Vignoud, Laurent Venance, Jonathan Touboul
Software Mentions: 3
Published: over 6 years ago
10.1093/bioinformatics/btaa928
BiasAway: command-line and web server to generate nucleotide composition-matched DNA background sequences
Cited by: 14
Author(s): Aziz Khan, Rafael Riudavets Puig, Paul Boddie, Anthony Mathelier
Software Mentions: 3
Published: about 4 years ago
10.3390/toxins13080555
The Allosteric Activation of α7 nAChR by α-Conotoxin MrIC Is Modified by Mutations at the Vestibular Site
Cited by: 5
Author(s): Alican Gulsevin, Roger L. Papke, Clare Stokes, Hue N. T. Tran, Aihua Jin, Irina Vetter, Jens Meiler
Software Mentions: 3
Published: over 3 years ago
10.7554/eLife.36928
Spatial sampling in human visual cortex is modulated by both spatial and feature-based attention
Cited by: 21
Author(s): Daniel Marten van Es, Jan Theeuwes, Tomas Knapen
Software Mentions: 3
Published: almost 6 years ago
10.1371/journal.pbio.3000814
Ratiometric quorum sensing governs the trade-off between bacterial vertical and horizontal antibiotic resistance propagation
Cited by: 4
Author(s): Alvaro Banderas, Arthur Carcano, Elisa Sia, Shuang Li, Ariel B. Lindner
Software Mentions: 3
Published: over 4 years ago
10.3389/fncel.2020.607843
Imaging Subthreshold Voltage Oscillation With Cellular Resolution in the Inferior Olive in vitro
Cited by: 3
Author(s): Kevin Dorgans, Bernd Kühn, Marylka Yoe Uusisaari
Software Mentions: 3
Published: almost 4 years ago
10.1111/tpj.13640
A computational approach for inferring the cell wall properties that govern guard cell dynamics
Cited by: 43
Author(s): Hugh Woolfenden, Gildas Bourdais, Michaela Kopischke, Eva Miedes, Antonio Molina, Silke Robatzek, Richard J. Morris
Software Mentions: 3
Published: about 7 years ago
10.3389/fncom.2017.00068
A Low-Rank Method for Characterizing High-Level Neural Computations
Cited by: 6
Author(s): Joel Thomas Kaardal, Frédéric E. Theunissen, Tatyana O. Sharpee
Software Mentions: 3
Published: over 7 years ago
10.3389/fncom.2021.627620
Fast Simulations of Highly-Connected Spiking Cortical Models Using GPUs
Cited by: 23
Author(s): Bruno Golosio, Gianmarco Tiddia, Chiara De Luca, Elena Pastorelli, Francesco Simula, P. Paolucci
Software Mentions: 3
Published: almost 4 years ago
10.3389/fncom.2019.00075
Extracting Reproducible Time-Resolved Resting State Networks Using Dynamic Mode Decomposition
Cited by: 25
Author(s): James Kunert-Graf, Kristian Eschenburg, David J. Galas, J. Nathan Kutz, Swati Rane, Bingni W. Brunton
Software Mentions: 3
Published: about 5 years ago
10.1098/rstb.2013.0067
Attention in natural scenes: contrast affects rapid visual processing and fixations alike
Cited by: 27
Author(s): Bernard Marius ’t Hart, Hannah Claudia Elfriede Fanny Schmidt, Ingo Klein-Harmeyer, Wolfgang Einhäuser
Software Mentions: 3
Published: about 11 years ago
10.1063/4.0000087
Reproducibility of protein x-ray diffuse scattering and potential utility for modeling atomic displacement parameters
Cited by: 4
Author(s): Zhen Su, M. Dasgupta, Frédéric Poitevin, I.I. Mathews, H. van den Bedem, Michael E. Wall, Chun Hong Yoon, Mark A. Wilson
Software Mentions: 3
Published: over 3 years ago
10.7717/peerj.996
NxRepair: error correction in<i>de novo</i>sequence assembly using Nextera mate pairs
Cited by: 20
Author(s): Rebecca R. Murphy, Jared O’Connell, A.J. Cox, Ole Schulz-Trieglaff
Software Mentions: 3
Published: over 9 years ago
10.26508/lsa.201800278
A network of human functional gene interactions from knockout fitness screens in cancer cells
Cited by: 79
Author(s): Eiru Kim, Merve Dede, Walter F. Lenoir, Gang Wang, Sanjana Srinivasan, Medina Colic, Traver Hart
Software Mentions: 3
Published: over 5 years ago
10.1523/JNEUROSCI.1578-18.2018
Insensitivity of place cells to the value of spatial goals in a two-choice flexible navigation task
Cited by: 33
Author(s): Éléonore Duvelle, Roddy M. Grieves, Vincent Hok, Bruno Poucet, Angelo Arleo, Kate J. Jeffery, Étienne Save
Software Mentions: 3
Published: almost 6 years ago
10.3390/v11110988
Evolution of a Landscape Phage Library in a Mouse Xenograft Model of Human Breast Cancer
Cited by: 10
Author(s): James W. Gillespie, Liping Yang, Laura M. De Plano, Murray Stackhouse, Valery A. Petrenko
Software Mentions: 3
Published: about 5 years ago
10.1093/bioinformatics/btaa711
A semi-supervised learning framework for quantitative structure–activity regression modelling
Cited by: 5
Author(s): Oliver P. Watson, Isidro Cortés-Ciriano, James A Watson
Software Mentions: 3
Published: over 4 years ago
10.3389/fendo.2021.698511
Mutational Landscape of the Proglucagon-Derived Peptides
Cited by: 7
Author(s): Peter Lindquist, Jakob Sture Madsen, Hans Bräuner‐Osborne, Mette M. Rosenkilde, Alexander S. Hauser
Software Mentions: 3
Published: over 3 years ago
10.15252/msb.20188557
<i>De novo</i> gene signature identification from single‐cell <scp>RNA</scp> ‐seq with hierarchical Poisson factorization
Cited by: 75
Author(s): Hanna Mendes Levitin, Jinzhou Yuan, Yim Ling Cheng, Francisco J. R. Ruiz, Erin C. Bush, Jeffrey N. Bruce, Peter Canoll, Antonio Iavarone, Anna Lasorella, David M. Blei, Peter A. Sims
Software Mentions: 3
Published: almost 6 years ago
10.3389/fgene.2021.648229
A Benchmark of Genetic Variant Calling Pipelines Using Metagenomic Short-Read Sequencing
Cited by: 13
Author(s): Sergio Andreu‐Sánchez, Lianmin Chen, Daoming Wang, Hannah E. Augustijn, Alexandra Zhernakova, Jingyuan Fu
Software Mentions: 3
Published: over 3 years ago
10.3390/s16030373
Estimating the Underwater Diffuse Attenuation Coefficient with a Low-Cost Instrument: The KdUINO DIY Buoy
Cited by: 29
Author(s): Raúl Bardají, Albert-Miquel Sánchez, Carine Simon, Marcel Robert Wernand, Jaume Piera
Software Mentions: 3
Published: over 8 years ago
10.15252/msb.20209530
Protein quality control and regulated proteolysis in the genome‐reduced organism <i>Mycoplasma pneumoniae</i>
Cited by: 14
Author(s): Raul Burgos, Marc Weber, Sira Martínez, María Lluch‐Senar, Luís Serrano
Software Mentions: 3
Published: almost 4 years ago
10.3390/healthcare8040402
Applying the Minimal Detectable Change of a Static and Dynamic Balance Test Using a Portable Stabilometric Platform to Individually Assess Patients with Balance Disorders
Cited by: 7
Author(s): Juan de la Torre, Javier Marín, Marco Polo, José J. Marín
Software Mentions: 3
Published: about 4 years ago
10.3390/genes10080613
Meta-Analysis of Cancer Triploidy: Rearrangements of Genome Complements in Male Human Tumors Are Characterized by XXY Karyotypes
Cited by: 12
Author(s): Ninel M. Vainshelbaum, Pawel Zayakin, Regīna Kleina, Alessandro Giuliani, Jekaterina Ērenpreisa
Software Mentions: 3
Published: over 5 years ago
10.15252/msb.202110243
Tensor‐structured decomposition improves systems serology analysis
Cited by: 9
Author(s): Zhixin Cyrillus Tan, Madeleine C Murphy, Hakan S Alpay, Scott D Taylor, Aaron S. Meyer
Software Mentions: 3
Published: about 3 years ago
10.1186/s12859-020-3513-y
ICEKAT: an interactive online tool for calculating initial rates from continuous enzyme kinetic traces
Cited by: 25
Author(s): Michael D. Olp, Kelsey S. Kalous, Brian C. Smith
Software Mentions: 3
Published: over 4 years ago
10.15252/msb.20199208
Impact of C‐terminal amino acid composition on protein expression in bacteria
Cited by: 17
Author(s): Marc Weber, Raul Burgos, Eva Yus, Jun Yang, María Lluch‐Senar, Luís Serrano
Software Mentions: 3
Published: over 4 years ago
10.3390/s17061263
Comparative Study of Neural Network Frameworks for the Next Generation of Adaptive Optics Systems
Cited by: 17
Author(s): Carlos González-Gutiérrez, Joana Santos, Mario Martínez‐Zarzuela, Alastair Basden, James Osborn, Francisco Javier Díaz Pernas, Francisco Javier de Cos Juez
Software Mentions: 3
Published: over 7 years ago
10.1002/1878-0261.13041
Characterization of fragment sizes, copy number aberrations and 4‐mer end motifs in cell‐free DNA of hepatocellular carcinoma for enhanced liquid biopsy‐based cancer detection
Cited by: 10
Author(s): Chao Jin, Xiaonan Liu, Wenyuan Zheng, Liping Su, Liu Yang, Xu Guo, Xiaoming Gu, Hongping Li, Bo Xu, Gang Wang, Jing Yu, Qiong Zhang, Dan Bao, Shaogui Wan, Fei Xu, Xiaohuan Lai, Jiayun Liu, Jinliang Xing
Software Mentions: 3
Published: over 3 years ago
10.7554/eLife.56053
Population coupling predicts the plasticity of stimulus responses in cortical circuits
Cited by: 24
Author(s): Yann Sweeney, Claudia Clopath
Software Mentions: 3
Published: over 4 years ago
10.1002/mgg3.1057
Candidate modifier genes for immune function in 22q11.2 deletion syndrome
Cited by: 3
Author(s): Catherina T. Pinnaro, Travis S. Henry, Heather J. Major, Mrutyunjaya Parida, Lucy E. DesJardin, J. Robert Manak, Benjamin W. Darbro
Software Mentions: 3
Published: almost 5 years ago
10.3390/molecules23061242
Substructural Connectivity Fingerprint and Extreme Entropy Machines—A New Method of Compound Representation and Analysis
Cited by: 6
Author(s): Krzysztof Rataj, Wojciech Marian Czarnecki, Sabina Podlewska, Agnieszka Pocha, Andrzej J. Bojarski
Software Mentions: 3
Published: over 6 years ago
10.3390/sports7110232
Relationship between Cyclic and Non-Cyclic Force-Velocity Characteristics in BMX Cyclists
Cited by: 3
Author(s): Micah Gross, Thomy Gross
Software Mentions: 3
Published: about 5 years ago
10.1021/acssynbio.0c00318
Synthetic Lateral Inhibition in Periodic Pattern Forming Microbial Colonies
Cited by: 11
Author(s): Salva Duran-Nebreda, Jordi Pla, Blai Vidiella, Jordi Piñero, Núria Conde-Pueyo, Ricard V. Solé
Software Mentions: 3
Published: almost 4 years ago
10.1107/S160057752000778X
A ray-tracing algorithm for <i>ab initio</i> calculation of thermal load in undulator-based synchrotron beamlines
Cited by: 7
Author(s): Luca Rebuffi, Xianbo Shi, Manuel Sánchez del Río, R. Reininger
Software Mentions: 3
Published: over 4 years ago
10.3389/fimmu.2021.636289
Predicting Lyme Disease From Patients' Peripheral Blood Mononuclear Cells Profiled With RNA-Sequencing
Cited by: 7
Author(s): Daniel J. B. Clarke, Alison W. Rebman, Allison Bailey, Megan L. Wojciechowicz, Sherry L. Jenkins, John Erol Evangelista, Matteo Danieletto, Jinshui Fan, Mark W. Eshoo, Michael R. Mosel, William H. Robinson, Nitya S. Ramadoss, Jason Bobe, Mark J. Soloski, Avi Ma’ayan
Software Mentions: 3
Published: over 3 years ago
10.1186/s12859-019-2892-4
MHCSeqNet: a deep neural network model for universal MHC binding prediction
Cited by: 48
Author(s): Poomarin Phloyphisut, Natapol Pornputtapong, Sira Sriswasdi, Ekapol Chuangsuwanich
Software Mentions: 3
Published: over 5 years ago
10.1074/mcp.O115.055467
Global Membrane Protein Interactome Analysis using In vivo Crosslinking and Mass Spectrometry-based Protein Correlation Profiling
Cited by: 61
Author(s): Mark Larance, Kathryn J. Kirkwood, Michele Tinti, Alejandro Brenes Murillo, Michael A. J. Ferguson, Angus I. Lamond
Software Mentions: 3
Published: over 8 years ago
10.7554/eLife.67851
Distinct synaptic transfer functions in same-type photoreceptors
Cited by: 6
Author(s): Cornelius Schröder, Jonathan Oesterle, Philipp Berens, Takeshi Yoshimatsu, Tom Baden
Software Mentions: 3
Published: over 3 years ago
10.1186/s40168-016-0225-7
Microbiota Transfer Therapy alters gut ecosystem and improves gastrointestinal and autism symptoms: an open-label study
Cited by: 832
Author(s): Dae Wook Kang, James B. Adams, Ann C. Gregory, Thomas J. Borody, Lauren Chittick, Alessio Fasano, Alexander Khoruts, E. Geis, Juan Maldonado, Sharon McDonough-Means, Elena L. Pollard, Simon Roux, Michael J. Sadowsky, Karen Schwarzberg Lipson, Matthew B. Sullivan, J. Gregory Caporaso, Rosa Krajmalnik‐Brown
Software Mentions: 3
Published: almost 8 years ago
10.1038/s41598-020-61180-2
Combined behavioral and electrophysiological evidence for a direct cortical effect of prefrontal tDCS on disorders of consciousness
Cited by: 50
Author(s): Bertrand Hermann, Federico Raimondo, Lukas Hirsch, Yu Huang, Mélanie Denis-Valente, Pauline Pérez, Denis A. Engemann, Frédéric Faugeras, Nicolas Weiss, Sophie Demeret, Benjamin Rohaut, Lucas C. Parra, Jacobo Sitt, Lionel Naccache
Software Mentions: 3
Published: over 4 years ago
10.1186/s40168-018-0495-3
Genomic variation and biogeography of Antarctic haloarchaea
Cited by: 31
Author(s): Bernhard Tschitschko, Susanne Erdmann, Matthew Z. DeMaere, Simon Roux, Pratibha Panwar, Michelle A. Allen, Timothy J. Williams, Sarah Brazendale, Alyce M. Hancock, Emiley A. Eloe‐Fadrosh, Ricardo Cavicchioli
Software Mentions: 3
Published: over 6 years ago
10.3389/fmed.2021.714221
Disease Severity and Prognosis of SARS-CoV-2 Infection in Hospitalized Patients Is Not Associated With Viral Load in Nasopharyngeal Swab
Cited by: 8
Author(s): Elisabetta Cocconcelli, G. Castelli, Francesco Onelia, Enrico Lavezzo, Chiara Giraudo, Nicol Bernardinello, Giulia Fichera, Davide Leoni, Marco Trevenzoli, Marina Saetta, Annamaria Cattelan, Andrea Crisanti, Paolo Spagnolo, Elisabetta Balestro
Software Mentions: 3
Published: about 3 years ago
10.1038/s41598-020-62525-7
Decoding of Pain Perception using EEG Signals for a Real-Time Reflex System in Prostheses: A Case Study
Cited by: 22
Author(s): Zied Tayeb, Rohit Bose, Andrei Dragomir, Luke Osborn, Nitish V. Thakor, Gordon Cheng
Software Mentions: 3
Published: over 4 years ago
10.3389/fpsyg.2013.00455
Fixations on objects in natural scenes: dissociating importance from salience
Cited by: 28
Author(s): Bernard Marius ’t Hart, Hannah Claudia Elfriede Fanny Schmidt, Christine Roth, Wolfgang Einhäuser
Software Mentions: 3
Published: almost 12 years ago
10.1038/s41598-019-45673-3
Precipitation extremes and depth-duration-frequency under internal climate variability
Cited by: 8
Author(s): Udit Bhatia, Auroop R. Ganguly
Software Mentions: 3
Published: over 5 years ago
10.1038/s41598-019-41345-4
Single-trial classification of awareness state during anesthesia by measuring critical dynamics of global brain activity
Cited by: 17
Author(s): Leandro M. Alonso, Guillermo Solovey, Toru Yanagawa, Alex Proekt, Guillermo A. Cecchi, Marcelo O. Magnasco
Software Mentions: 3
Published: over 5 years ago
10.1038/s41598-019-40965-0
Transposable elements contribute to fungal genes and impact fungal lifestyle
Cited by: 49
Author(s): Anna Muszewska, Kamil Steczkiewicz, Marta M. Stepniewska-Dziubinska, Krzysztof Ginalski
Software Mentions: 3
Published: over 5 years ago
10.1038/s41598-020-72781-2
Integrating metabolomics and targeted gene expression to uncover potential biomarkers of fungal/oomycetes-associated disease susceptibility in grapevine
Cited by: 29
Author(s): Marisa Maia, António E. N. Ferreira, Rui Nascimento, Filipa Monteiro, Francisco Traquete, A. Marques, Jorge Cunha, Carlos Cordeiro, Andreia Figueiredo, Marta Sousa Silva
Software Mentions: 3
Published: about 4 years ago
10.1038/s41598-018-37835-6
Differentiating between cancer and normal tissue samples using multi-hit combinations of genetic mutations
Cited by: 20
Author(s): Sajal Dash, Nicholas A. Kinney, Robin Varghese, Harold R. Garner, Wu-chun Feng, Ramu Anandakrishnan
Software Mentions: 3
Published: almost 6 years ago
10.1038/s41598-018-36041-8
Characterizing early drug resistance-related events using geometric ensembles from HIV protease dynamics
Cited by: 20
Author(s): Olivier Sheik Amamuddy, Nigel T. Bishop, Özlem Tastan Bishop
Software Mentions: 3
Published: almost 6 years ago
10.1007/978-1-4939-7493-1_6
Phosphoproteomics-Based Profiling of Kinase Activities in Cancer Cells
Cited by: 24
Author(s): Jakob Wirbel, Pedro R. Cutillas, Julio Sáez-Rodríguez
Software Mentions: 3
Published: almost 7 years ago
10.1038/s41598-020-76599-w
Integrating single-cell RNA-seq and imaging with SCOPE-seq2
Cited by: 15
Author(s): Zhouzerui Liu, Jinzhou Yuan, Anna Lasorella, Antonio Iavarone, Jeffrey N. Bruce, Peter Canoll, Peter A. Sims
Software Mentions: 3
Published: about 4 years ago
10.3389/fmolb.2018.00115
Why the Energy Landscape of Barnase Is Hierarchical
Cited by: 5
Author(s): Maya J. Pandya, Stefanie Schiffers, Andrea M. Hounslow, Nicola J. Baxter, Mike Williamson
Software Mentions: 3
Published: almost 6 years ago
10.3389/fmolb.2021.639423
A Validated Mathematical Model of the Cytokine Release Syndrome in Severe COVID-19
Cited by: 17
Author(s): Ruy Freitas Reis, Alexandre Bittencourt Pigozzo, Carla Rezende Barbosa Bonin, Bárbara de Melo Quintela, Lara Turetta Pompei, Ana Carolina Maciel Vieira, L. L. E. Silva, Maicom Peters Xavier, Rodrigo Weber dos Santos, Marcelo Lobosco
Software Mentions: 3
Published: over 3 years ago
10.1186/s13073-021-00894-y
Deconvolution of cell type-specific drug responses in human tumor tissue with single-cell RNA-seq
Cited by: 36
Author(s): Wenting Zhao, Athanassios Dovas, Eleonora F. Spinazzi, Hanna Mendes Levitin, Matei Banu, Pavan S. Upadhyayula, Tejaswi Sudhakar, Tamara Marie, Marc L. Otten, Michael B. Sisti, Jeffrey N. Bruce, Peter Canoll, Peter A. Sims
Software Mentions: 3
Published: over 3 years ago
10.1038/s41598-018-29390-x
Role of extrinsic mechanical force in the development of the RA-I tactile mechanoreceptor
Cited by: 0
Author(s): Trung Quang Pham, Takumi Kawaue, Takayuki Hoshi, Yoshihiro Tanaka, Takaki Miyata, Akihito Sano
Software Mentions: 3
Published: over 6 years ago
10.1038/s41598-020-77549-2
Automated measurement of long-term bower behaviors in Lake Malawi cichlids using depth sensing and action recognition
Cited by: 3
Author(s): Zachary V. Johnson, Manu Tej Sharma Arrojwala, Vineeth Aljapur, Tyrone Lee, Tucker J. Lancaster, Mark C. Lowder, Karen Gu, Joseph Stockert, Rachel L. Lecesne, Jean Michael Moorman, J. Todd Streelman, Patrick T. McGrath
Software Mentions: 3
Published: almost 4 years ago
10.1152/jn.00201.2021
Within-cycle instantaneous frequency profiles report oscillatory waveform dynamics
Cited by: 21
Author(s): Andrew Quinn, Vítor Lopes‐dos‐Santos, Norden E. Huang, Wei Kuang Liang, Juan C-H., Jia-Rong Yeh, Anna C. Nobre, David Dupret, Mark W. Woolrich
Software Mentions: 3
Published: about 3 years ago
10.3389/fpsyg.2018.00612
ExGUtils: A Python Package for Statistical Analysis With the ex-Gaussian Probability Density
Cited by: 22
Author(s): Carmen Moret-Tatay, D. Gamermann, Esperanza Navarro‐Pardo, Pedro Fernández de Córdoba Castellá
Software Mentions: 3
Published: over 6 years ago
10.3389/fpsyg.2014.01390
Jointly structuring triadic spaces of meaning and action: book sharing from 3 months on
Cited by: 62
Author(s): Nicole Rossmanith, Alan Costall, Andreas Reichelt, Beatriz López, Vasudevi Reddy
Software Mentions: 3
Published: almost 10 years ago
10.1038/s41598-020-77765-w
Machine learning issues and opportunities in ultrafast particle classification for label-free microflow cytometry
Cited by: 4
Author(s): Alessio Lugnan, Emmanuel Gooskens, Jeremy Vatin, Joni Dambre, Peter Bienstman
Software Mentions: 3
Published: almost 4 years ago
10.7554/eLife.36953
Wnt/PCP controls spreading of Wnt/β-catenin signals by cytonemes in vertebrates
Cited by: 96
Author(s): Benjamin Mattes, Yonglong Dang, Gediminas Greicius, Lilian T. Kaufmann, Benedikt Prunsche, Jakob Rosenbauer, Johannes Stegmaier, Ralf Mikut, Suat Özbek, G. Ulrich Nienhaus, Alexander Schug, David M. Virshup, Steffen Scholpp
Software Mentions: 3
Published: over 6 years ago
10.1038/s41598-017-17500-0
Blood plasma/IgG N-glycome biosignatures associated with major depressive disorder symptom severity and the antidepressant response
Cited by: 24
Author(s): Dong Ik Park, Jerko Štambuk, Genadij Razdorov, Maja Pučić‐Baković, Daniel Martins-de-Souza, Gordan Lauc, Christoph W. Turck
Software Mentions: 3
Published: almost 7 years ago
10.1038/s41598-017-17071-0
Bayesian Analysis of MicroScale Thermophoresis Data to Quantify Affinity of Protein:Protein Interactions with Human Survivin
Cited by: 7
Author(s): María-José García-Bonete, Mikael Jensen, Christian V. Recktenwald, Sandra Rocha, Volker Stadler, Maria Bokarewa, Gergely Katona
Software Mentions: 3
Published: almost 7 years ago
10.1038/s41598-017-13259-6
RIFS: a randomly restarted incremental feature selection algorithm
Cited by: 28
Author(s): Yuting Ye, Ruochi Zhang, Weiwei Zheng, Shuai Liu, Fengfeng Zhou
Software Mentions: 3
Published: about 7 years ago
10.1038/s41598-017-12989-x
Impact of sequencing depth and read length on single cell RNA sequencing data of T cells
Cited by: 62
Author(s): Simone Rizzetto, Auda A. Eltahla, Peijie Lin, Rowena A. Bull, Andrew R. Lloyd, Joshua W. K. Ho, Vanessa Venturi, Fabio Luciani
Software Mentions: 3
Published: about 7 years ago
10.1186/s13073-020-00809-3
Improved analysis of CRISPR fitness screens and reduced off-target effects with the BAGEL2 gene essentiality classifier
Cited by: 49
Author(s): Eiru Kim, Traver Hart
Software Mentions: 3
Published: almost 4 years ago
10.1038/s41598-017-06741-8
Porcine familial adenomatous polyposis model enables systematic analysis of early events in adenoma progression
Cited by: 22
Author(s): Tatiana Flisikowska, Monika Stachowiak, Hongen Xu, Alexandra Wagner, Alejandra Hernandez-Caceres, Christine Wurmser, Carolin Perleberg, Hubert Pausch, Anna Perkowska, Konrad Fischer, Dmitrij Frishman, R. Fries, M. Świtoński, Alexander Kind, Dieter Saur, Angelika Schnieke, Krzysztof Flisikowski
Software Mentions: 3
Published: over 7 years ago
10.1038/srep42765
Duration of SHIV production by infected cells is not exponentially distributed: Implications for estimates of infection parameters and antiviral efficacy
Cited by: 31
Author(s): C. Beauchemin, Tomoyuki Miura, Shingo Iwami
Software Mentions: 3
Published: almost 8 years ago
10.1038/srep38084
Circulating cell-free DNA, telomere length and bilirubin in the Vienna Active Ageing Study: exploratory analysis of a randomized, controlled trial
Cited by: 16
Author(s): Anela Tosevska, Bernhard Franzke, Marlene Hofmann, Immina Vierheilig, Barbara Schober-Halper, Stefan Oesen, Oliver Neubauer, Barbara Wessner, Karl‐Heinz Wagner
Software Mentions: 3
Published: almost 8 years ago
10.3389/fpsyg.2018.01815
Creative Argumentation: When and Why People Commit the Metaphoric Fallacy
Cited by: 11
Author(s): Francesca Ervas, Antonio Ledda, Amitash Ojha, G. A. Pierro, Bipin Indurkhya
Software Mentions: 3
Published: about 6 years ago
10.3390/membranes5040702
Lipid Diffusion in Supported Lipid Bilayers: A Comparison between Line-Scanning Fluorescence Correlation Spectroscopy and Single-Particle Tracking
Cited by: 26
Author(s): Markus Rose, Nehad Hirmiz, Jose M. Moran‐Mirabal, Cécile Fradin
Software Mentions: 3
Published: about 9 years ago
10.7554/eLife.50340
Experience shapes activity dynamics and stimulus coding of VIP inhibitory cells
Cited by: 53
Author(s): Marina Garrett, Sahar Manavi, Kate Roll, Douglas R. Ollerenshaw, Peter A. Groblewski, Nicholas D. Ponvert, Justin Kiggins, Linzy Casal, Kyla Mace, Ali Williford, Arielle Leon, Xiaoxuan Jia, Peter Ledochowitsch, Michael A. Buice, Wayne Wakeman, Ştefan Mihalaş, Shawn R. Olsen
Software Mentions: 3
Published: over 4 years ago
10.1038/srep11988
Exploring Host-Microbiome Interactions using an in Silico Model of Biomimetic Robots and Engineered Living Cells
Cited by: 17
Author(s): Keith C. Heyde, Warren C. Ruder
Software Mentions: 3
Published: over 9 years ago
10.1038/sdata.2017.85
An ab initio electronic transport database for inorganic materials
Cited by: 127
Author(s): Francesco Ricci, Wei Chen, Umut Aydemir, G. Jeffrey Snyder, Gian‐Marco Rignanese, Anubhav Jain, Geoffroy Hautier
Software Mentions: 3
Published: over 7 years ago
10.3390/ijms22115802
OCRDetector: Accurately Detecting Open Chromatin Regions via Plasma Cell-Free DNA Sequencing Data
Cited by: 3
Author(s): Jiayin Wang, Liubin Chen, Xuanping Zhang, Yao Tong, Tian Zheng
Software Mentions: 3
Published: over 3 years ago
10.1186/s13014-021-01847-w
DeepBeam: a machine learning framework for tuning the primary electron beam of the PRIMO Monte Carlo software
Cited by: 4
Author(s): Zbisław Tabor, Damian Kabat, M.P.R. Waligórski
Software Mentions: 3
Published: over 3 years ago
10.1186/s12859-020-03845-3
Validation of a yellow fever vaccine model using data from primary vaccination in children and adults, re-vaccination and dose-response in adults and studies with immunocompromised individuals
Cited by: 3
Author(s): Carla Rezende Barbosa Bonin, Guilherme Côrtes Fernandes, Reinaldo de Menezes Martins, Luiz Antônio Bastos Camacho, Andréa Teixeira-Carvalho, Lícia Maria Henrique da Mota, Sheila Maria Barbosa de Lima, Ana Carolina Campi-Azevedo, Olindo Assis Martins‐Filho, Rodrigo Weber dos Santos, Marcelo Lobosco
Software Mentions: 3
Published: almost 4 years ago
10.3390/ijms21155476
A Structural Model for Bax∆2-Mediated Activation of Caspase 8-Dependent Apoptosis
Cited by: 2
Author(s): Bing Xie, Qi Yao, Jialing Xiang, David D. L. Minh
Software Mentions: 3
Published: over 4 years ago
10.3390/s19051082
High-Index Glass Ball Retroreflectors for Measuring Lateral Positions
Cited by: 4
Author(s): A. Egidi, Alessandro Balsamo, Marco Pisani
Software Mentions: 3
Published: over 5 years ago
10.3390/s20082403
Analyzing the Effectiveness of the Brain–Computer Interface for Task Discerning Based on Machine Learning
Cited by: 3
Author(s): Jakub Browarczyk, Adam Kurowski, Bożena Kostek
Software Mentions: 3
Published: over 4 years ago
10.1038/s41598-021-90255-x
Modular barcode beads for microfluidic single cell genomics
Cited by: 12
Author(s): Cyrille L. Delley, Adam R. Abate
Software Mentions: 3
Published: over 3 years ago
10.1186/s13073-019-0665-3
Identifying chemogenetic interactions from CRISPR screens with drugZ
Cited by: 106
Author(s): Medina Colic, Gang Wang, Michal Zimmermann, Keith Mascall, Megan McLaughlin, Lori Bertolet, Walter F. Lenoir, Jason Moffat, Stéphane Angers, Daniel Durocher, Traver Hart
Software Mentions: 3
Published: over 5 years ago
10.1371/journal.ppat.1008337
Comprehensive analysis of iron utilization by Mycobacterium tuberculosis
Cited by: 52
Author(s): Lei Zhang, R. Curtis Hendrickson, Virginia Meikle, Elliot J. Lefkowitz, Thomas R. Ioerger, Michael Niederweis
Software Mentions: 3
Published: almost 5 years ago
10.3389/fneur.2020.578571
Cognitive Processing Impacts High Frequency Intracranial EEG Activity of Human Hippocampus in Patients With Pharmacoresistant Focal Epilepsy
Cited by: 5
Author(s): Jan Cimbálník, Martin Pail, Petr Klimeš, Vojtech Travnicek, Róbert Román, Adam Vajčner, Milan Brázdil
Software Mentions: 3
Published: about 4 years ago
10.1038/s41598-021-91861-5
Evaluation of the Intel RealSense T265 for tracking natural human head motion
Cited by: 16
Author(s): Peter Hausamann, Christian Sinnott, Martin Däumer, Paul R. MacNeilage
Software Mentions: 3
Published: over 3 years ago
10.3390/s18113743
Characterizing Focused Attention and Working Memory Using EEG
Cited by: 35
Author(s): Zainab Mohamed, Mohamed El Halaby, Tamer Said, Doaa M. Shawky, Ashraf H. Badawi
Software Mentions: 3
Published: about 6 years ago
10.3389/fnbot.2020.589532
Robust Trajectory Generation for Robotic Control on the Neuromorphic Research Chip Loihi
Cited by: 7
Author(s): Carlo Michaelis, Andrew B. Lehr, Christian Tetzlaff
Software Mentions: 3
Published: almost 4 years ago
10.1080/14756366.2016.1260565
Exploring the first Rimonabant analog-opioid peptide hybrid compound, as bivalent ligand for CB1 and opioid receptors
Cited by: 26
Author(s): Adriano Mollica, Sveva Pelliccia, Valeria Famiglini, Azzurra Stefanucci, Giorgia Macedonio, Annalisa Chiavaroli, Giustino Orlando, Luigi Brunetti, Claudio Ferrante, Stefano Pieretti, Ettore Novellino, Sándor Benyhe, Ferenc Zádor, Anna Erdei, Edina Szűcs, Reza Samavati, Szalbolch Dvrorasko, Csaba Tömböly, Rino Ragno, Alexandros Patsilinakos, Romano Silvestri
Software Mentions: 3
Published: almost 8 years ago
10.1007/s10827-015-0565-5
Reconstruction of recurrent synaptic connectivity of thousands of neurons from simulated spiking activity
Cited by: 41
Author(s): Yury V. Zaytsev, Abigail Morrison, Moritz Deger
Software Mentions: 3
Published: over 9 years ago
10.3389/fnins.2018.00041
Understanding the Generation of Network Bursts by Adaptive Oscillatory Neurons
Cited by: 22
Author(s): Tanguy Fardet, Mathieu Ballandras, Samuel Bottani, Stéphane Métens, Pascal Monceau
Software Mentions: 3
Published: almost 7 years ago
10.1007/s10822-014-9720-8
Efficient calculation of SAMPL4 hydration free energies using OMEGA, SZYBKI, QUACPAC, and Zap TK
Cited by: 13
Author(s): Benjamin A. Ellingson, Matthew T. Geballe, S. Włodek, Christopher I. Bayly, A. Geoffrey Skillman, Anthony Nicholls
Software Mentions: 3
Published: over 10 years ago
10.3390/jcm10132753
Fecal Microbial Transplantation versus Mesalamine Enema for Treatment of Active Left-Sided Ulcerative Colitis—Results of a Randomized Controlled Trial
Cited by: 19
Author(s): Jan Březina, Lukáš Bajer, Pavel Wohl, Dana Ďuricová, P Hrabák, Aleš Novotný, Jana Koželuhová, Milan Lukáš, Jakub Mrázek, K. Fliegerová, Simona Kvasnová, Chahrazed Mekadim, Jan Mareš, Julius Špičák, Pavel Drastich
Software Mentions: 3
Published: over 3 years ago
10.3390/ijms22062784
Urinary Exosomes Identify Inflammatory Pathways in Vancomycin Associated Acute Kidney Injury
Cited by: 12
Author(s): Linda Awdishu, Amy Le, Jordan Amato, Vidhyut Jani, Soma Bal, Robert H. Mills, Marvic Carrillo-Terrazas, David J. Gonzalez, Ashita J. Tolwani, Anjali Acharya, Jorge Cerdá, Melanie S. Joy, Paola Nicoletti, Etienne Macedo, Sucheta M. Vaingankar, Ravindra L. Mehta, Satish P. RamachandraRao
Software Mentions: 3
Published: over 3 years ago
10.1038/s41598-021-94330-1
The expression of FLNA and CLU in PBMCs as a novel screening marker for hepatocellular carcinoma
Cited by: 13
Author(s): Rathasapa Patarat, Shoji Riku, Pattapon Kunadirek, Natthaya Chuaypen, Pisit Tangkijvanich, Apiwat Mutirangura, Charoenchai Puttipanyalears
Software Mentions: 3
Published: over 3 years ago
10.1186/s13321-021-00537-9
QPHAR: quantitative pharmacophore activity relationship: method and validation
Cited by: 5
Author(s): Stefan Michael Kohlbacher, Thomas Langer, Thomas Seidel
Software Mentions: 3
Published: over 3 years ago