Projects: pypi: scikit-learn

https://packages.ecosyste.ms/registries/pypi.org/packages/scikit-learn

A set of python modules for machine learning and data mining
72 versions
Latest release: about 2 years ago
5,918 dependent packages
43,777,417 downloads last month

Enhanced Analysis
Educational Contributors: a.joly@ulg.ac.be vanderplas@astro.washington.edu bh00038@cvplws63.eps.surrey.ac.uk ha258@cornell.edu satra@mit.edu zl2480@columbia.edu pinto@alum.mit.edu jz4721@nyu.edu matteo.visconti.gr@dartmouth.edu vighneshbirodkar@nyu.edu robert.l.marchman@dartmouth.edu rs2715@stern.nyu.edu claire.savard@colorado.edu aaaagrawal@iitb.ac.in ihaque@cs.stanford.edu rspeer@mit.edu mluessi@nmr.mgh.harvard.edu amitibo@tx.technion.ac.il ericchang2017@u.northwestern.edu jkarno@seas.upenn.edu minghui.liu@trincoll.edu m.lyra@sussex.ac.uk andrew.knyazev@ucdenver.edu lamb@cs.stanford.edu camilo@neurostat.mit.edu martino.sorbaro@ed.ac.uk t.sheerman-chase@surrey.ac.uk cgohlke@uci.edu batulaa@drexel.edu kcarnold@alum.mit.edu apw@seas.harvard.edu abie@alum.mit.edu rossbar@berkeley.edu alceballosa@unal.edu.co fhoang7@berkeley.edu hechen@seas.upenn.edu stefan@sun.ac.za deepyaman.datta@utexas.edu rebekah.kim@columbia.edu shubham.bhardwaj2015@vit.ac.in slama@berkeley.edu nisingh@wharton.upenn.edu kanikas3@vt.edu jdlabal@stanford.edu kjells@uw.edu markus.loning.17@ucl.ac.uk k_nzw@klis.tsukuba.ac.jp dkirkby@uci.edu balawson@bu.edu c.brummitt@columbia.edu choo8@illinois.edu giorgio.patrini@anu.edu.au shangwuy@andrew.cmu.edu rafael.possas@sydney.edu.au olsonran@msu.edu brian.mcfee@nyu.edu naj273@nyu.edu dgrusak@trinity.edu emd222@cornell.edu voth0@sewanee.edu trishnendu.dd2014@cs.iiests.ac.in apeng@berkeley.edu boucher@cs.umass.edu lunt@ctbp.ucsd.edu bakhbari@mgh.harvard.edu piraka@brandeis.edu neal.lathia@cl.cam.ac.uk razhoshia@post.bgu.ac.il michal.romaniuk06@ic.ac.uk m.batchkarov@sussex.ac.uk lemin@cs.colostate.edu rudvlf0413@korea.ac.kr vredev16@msu.edu raschkas@msu.edu ali.baharev@univie.ac.at a.krasoulis@sms.ed.ac.uk arokem@berkeley.edu gabrielvr@al.insper.edu.br eric.sanchez1234@email.bakersfieldcollege.edu fcchou@stanford.edu rofuyu@cs.utexas.edu glemaitre@visor.udg.edu naoyaiijima@hiroshima-u.ac.jp ayushgup@iitk.ac.in joel@vlan-2666-10-17-16-173.staff.wireless.sydney.edu.au jam7w2@mail.missouri.edu j.hale09@imperial.ac.uk tw991@nyu.edu patel_zeel@iitgn.ac.in vincent.lostanlen@nyu.edu stvjc@channing.harvard.edu ritchieng@u.nus.edu bansalsi@usc.edu rbarnes@umn.edu rrohan@cs.cmu.edu liutong.zhou@columbia.edu mdh386@nyu.edu mlf419@nyu.edu shreyave@usc.edu jin.siy@northeastern.edu samuel_ainsworth@brown.edu cwijes1@lsu.edu wadawson@ucdavis.edu xinyuliu@umich.edu rz258@cornell.edu daniel.mallia21@myhunter.cuny.edu argriffi@ncsu.edu filipj@umich.edu kms15@case.edu sam.dixon@berkeley.edu khong008@e.ntu.edu.sg jnelso11@gmu.edu jclawton@umich.edu jaehyunahn@sogang.ac.kr ijpulidos@unal.edu.co gstupp@scripps.edu justhube@umich.edu noamkeidar@campus.technion.ac.il nityamd@nyu.edu css459@nyu.edu alyee@ucsd.edu andersk@mit.edu dhanus@mit.edu coreylevinson@uchicago.edu cailean.carter@quadram.ac.uk bral4884@colorado.edu dschult@colgate.edu dpwe@ee.columbia.edu dylan.cashman@tufts.edu pawelsendyk@berkeley.edu qzhang90@gatech.edu mhaberla@calpoly.edu saketk@student.unimelb.edu.au eunjikim@dm.snu.ac.kr erinrhof@uw.edu ksivaman@purdue.edu garmstrong@ucsd.edu konstantin.shmelkov@polytechnique.edu e175774@ie.u-ryukyu.ac.jp hermidal@cs.umd.edu jbearer@hmc.edu jmarin@csail.mit.edu
Repository Activity:
Repository Owner: scikit-learn (organization)
Repositories related to the scikit-learn Python machine learning library. Academic
README Analysis:
Science Score: 100/100
Starting Score: 100 points
Bonuses:
  • +2840 Educational commit emails
    142 contributors with educational email addresses
  • +20 Academic repository owner
    Repository owned by academic institution
  • +15 Institutional repository owner
    Repository owned by research institution
  • +6 Science terms in README
    3 scientific terms found in README
Penalties:
  • -10 PyPI ecosystem
    General-purpose ecosystem

Very Likely Science (100)

Papers Mentioning scikit-learn 2,431

10.3389/fmed.2020.00177
Effects of Label Noise on Deep Learning-Based Skin Cancer Classification
Cited by: 31
Author(s): Achim Hekler, Jakob Nikolas Kather, Eva Krieghoff-Henning, Jochen Utikal, Friedegund Meier, Frank Friedrich Gellrich, Julius Upmeier zu Belzen, Lars E. French, Justin Gabriel Schlager, Kamran Ghoreschi, Tabea Wilhelm, Heinz Kutzner, Carola Berking, Markus V. Heppt, Sebastian Haferkamp, Wiebke Sondermann, Dirk Schadendorf, Bastian Schilling, Benjamin Izar, Roman C. Maron, Max Schmitt, Stefan Fröhling, Daniel B. Lipka, Titus J. Brinker
Software Mentions: 4
Published: over 5 years ago
10.1016/j.molcel.2019.11.010
Functional Translatome Proteomics Reveal Converging and Dose-Dependent Regulation by mTORC1 and eIF2α
Cited by: 70
Author(s): Kevin Klann, Georg Tascher, Christian Münch
Software Mentions: 4
Published: almost 6 years ago
10.3390/ijms20194833
Skin Doctor: Machine Learning Models for Skin Sensitization Prediction that Provide Estimates and Indicators of Prediction Reliability
Cited by: 12
Author(s): Anke Wilm, Conrad Stork, Christoph Bauer, Andreas Schepky, Jochen Kühnl, Johannes Kirchmair
Software Mentions: 4
Published: about 6 years ago
10.1371/journal.pone.0222907
A comparison of machine learning algorithms for the surveillance of autism spectrum disorder
Cited by: 18
Author(s): Scott H. Lee, Matthew J. Maenner, Charles M. Heilig
Software Mentions: 4
Published: about 6 years ago
10.3389/fimmu.2020.552596
Toward a Better Understanding of Bioassays for the Development of Biopharmaceuticals by Exploring the Structure-Antibody-Dependent Cellular Cytotoxicity Relationship in Human Primary Cells
Cited by: 2
Author(s): Sébastien Wieckowski, Cécile Avenal, Arturo V. Orjalo, Daniel Gygax, Florian Cymer
Software Mentions: 4
Published: about 5 years ago
10.7554/eLife.40162
Motion sensing superpixels (MOSES) is a systematic computational framework to quantify and discover cellular motion phenotypes
Cited by: 8
Author(s): Felix Zhou, Carlos Ruiz‐Puig, Richard Owen, Michael J. White, Jens Rittscher, Xin Lü
Software Mentions: 4
Published: over 6 years ago
10.3390/jpm11080686
JDSNMF: Joint Deep Semi-Non-Negative Matrix Factorization for Learning Integrative Representation of Molecular Signals in Alzheimer’s Disease
Cited by: 5
Author(s): Sehwan Moon, Hyunju Lee
Software Mentions: 4
Published: over 4 years ago
10.7554/eLife.62865
Developmental hourglass and heterochronic shifts in fin and limb development
Cited by: 7
Author(s): Koh Onimaru, Kaori Tatsumi, Chiharu Tanegashima, Mitsutaka Kadota, Osamu Nishimura, Shigehiro Kuraku
Software Mentions: 4
Published: over 4 years ago
10.3389/fgene.2018.00682
Embedding of Genes Using Cancer Gene Expression Data: Biological Relevance and Potential Application on Biomarker Discovery
Cited by: 26
Author(s): Chi Tung Choy, Chi Hang Wong, Stephen L. Chan
Software Mentions: 4
Published: almost 7 years ago
10.3389/fgene.2021.648329
Deep Learning Reveals Key Immunosuppression Genes and Distinct Immunotypes in Periodontitis
Cited by: 10
Author(s): Wanchen Ning, Aneesha Acharya, Zhenjie Sun, Anthony Chukwunonso Ogbuehi, Cong Liu, Shiting Hua, Qiyun Ou, Muhui Zeng, Xiangqiong Liu, Yupei Deng, Rainer Haak, Dirk Ziebolz, Gerhard Schmalz, George Pelekos, Yan Wang, Xianda Hu
Software Mentions: 4
Published: over 4 years ago
10.7554/eLife.56261
Training deep neural density estimators to identify mechanistic models of neural dynamics
Cited by: 99
Author(s): Pedro J. Gonçalves, Jan-Matthis Lueckmann, Michael Deistler, Marcel Nonnenmacher, Kaan Öcal, Giacomo Bassetto, Chaitanya Chintaluri, William F Podlaski, Sara A. Haddad, Tim P. Vogels, David S. Greenberg, Jakob H. Macke
Software Mentions: 4
Published: about 5 years ago
10.1128/mSystems.00960-20
Human Gene Functional Network-Informed Prediction of HIV-1 Host Dependency Factors
Cited by: 3
Author(s): Chen Fu, Shiping Yang, Xiaodi Yang, Xianyi Lian, Yan Huang, Xiaobao Dong, Ziding Zhang
Software Mentions: 4
Published: almost 5 years ago
10.3389/fnhum.2019.00295
Theories and Methods for Labeling Cognitive Workload: Classification and Transfer Learning
Cited by: 18
Author(s): Ryan McKendrick, Bradley Feest, Amanda E. Harwood, Brian Falcone
Software Mentions: 4
Published: about 6 years ago
10.1371/journal.pmed.1002683
Variable generalization performance of a deep learning model to detect pneumonia in chest radiographs: A cross-sectional study
Cited by: 809
Author(s): John R. Zech, Marcus A. Badgeley, Manway Liu, Anthony Costa, J. Titano, Eric K. Oermann
Software Mentions: 4
Published: almost 7 years ago
10.1371/journal.pmed.1002697
Automated detection of moderate and large pneumothorax on frontal chest X-rays using deep convolutional neural networks: A retrospective study
Cited by: 146
Author(s): Andrew G. Taylor, Clinton Mielke, John Mongan
Software Mentions: 4
Published: almost 7 years ago
10.1186/s12859-017-1751-4
Quantiprot - a Python package for quantitative analysis of protein sequences
Cited by: 8
Author(s): Bogumił M. Konopka, Marta Anna Marciniak, Witold Dyrka
Software Mentions: 4
Published: over 8 years ago
10.1371/journal.pone.0203839
Using wearable sensors to classify subject-specific running biomechanical gait patterns based on changes in environmental weather conditions
Cited by: 40
Author(s): Nizam Uddin Ahamed, Dylan Kobsar, Lauren C. Benson, Christian A. Clermont, Russell Kohrs, Sean T. Osis, Reed Ferber
Software Mentions: 4
Published: about 7 years ago
10.1128/mSystems.00211-19
Identification of Primary Antimicrobial Resistance Drivers in Agricultural Nontyphoidal Salmonella enterica Serovars by Using Machine Learning
Cited by: 16
Author(s): Finlay Maguire, Muhammad Attiq Rehman, Catherine D. Carrillo, Moussa S. Diarra, Robert G. Beiko
Software Mentions: 4
Published: about 6 years ago
10.1371/journal.pgen.1009713
Multitrait GWAS to connect disease variants and biological mechanisms
Cited by: 12
Author(s): Hanna Julienne, Vincent Laville, Zachary R. McCaw, Zihuai He, Vincent Guillemot, Carla Lasry, Andrey Ziyatdinov, Cyril Nerin, Amaury Vaysse, Pierre Lechat, Hervé Ménager, Wilfried Le Goff, Marie‐Pierre Dubé, Peter Kraft, Iuliana Ionita‐Laza, Bjarni J. Vilhjálmsson, Hugues Aschard
Software Mentions: 4
Published: about 4 years ago
10.1371/journal.pgen.1008466
Paralog buffering contributes to the variable essentiality of genes in cancer cell lines
Cited by: 59
Author(s): Barbara De Kegel, Colm J. Ryan
Software Mentions: 4
Published: about 6 years ago
10.1371/journal.pone.0249424
miRGTF-net: Integrative miRNA-gene-TF network analysis reveals key drivers of breast cancer recurrence
Cited by: 15
Author(s): Stepan Nersisyan, A. V. Galatenko, Vladimir Galatenko, M. Yu. Shkurnikov, Alexander G. Tonevitsky
Software Mentions: 4
Published: over 4 years ago
10.3389/fgene.2020.618478
ATACgraph: Profiling Genome-Wide Chromatin Accessibility From ATAC-seq
Cited by: 7
Author(s): Rita Jui-Hsien Lu, Yen-Ting Liu, Chih-Wei Huang, Ming‐Ren Yen, Chung‐Yen Lin, Pao‐Yang Chen
Software Mentions: 4
Published: almost 5 years ago
10.1016/j.media.2020.101871
Accurate brain age prediction with lightweight deep neural networks
Cited by: 199
Author(s): Peng Han, Weikang Gong, Christian F. Beckmann, Andrea Vedaldi, Stephen M. Smith
Software Mentions: 4
Published: almost 5 years ago
10.1186/s12916-019-1292-y
Repeated clinical malaria episodes are associated with modification of the immune system in children
Cited by: 33
Author(s): Yaw Bediako, Rebecca N. Adams, Adam J. Reid, John Joseph Valletta, Francis M. Ndungu, Jan Sodenkamp, Jedidah Mwacharo, Joyce M. Ngoi, Domtila Kimani, Oscar Kai, Juliana Wambua, George Nyangweso, Etienne P. de Villiers, Mandy Sanders, Magda E. Lotkowska, Jing-wen Lin, Sabrina Manni, John W.G. Addy, Mario Recker, Chris Newbold, Matthew Berriman, Philip Bejon, Kevin Marsh, Jean Langhorne
Software Mentions: 4
Published: over 6 years ago
10.1371/journal.pgen.1008935
Horizontal transmission and recombination maintain forever young bacterial symbiont genomes
Cited by: 82
Author(s): Shelbi L. Russell, Evan Pepper-Tunick, Jesper Svedberg, Ashley Byrne, Jennie Ruelas Castillo, Christopher Vollmers, Roxanne A. Beinart, Russell Corbett-Detig
Software Mentions: 4
Published: about 5 years ago
10.1186/s12967-020-02400-1
Collapsing the list of myocardial infarction-related differentially expressed genes into a diagnostic signature
Cited by: 11
Author(s): German Osmak, Natalia Baulina, Philipp Koshkin, О. О. Фаворова
Software Mentions: 4
Published: over 5 years ago
10.3390/s21186020
Biometric Identification Based on Eye Movement Dynamic Features
Cited by: 3
Author(s): Katarzyna Harężlak, Michal Blasiak, Paweł Kasprowski
Software Mentions: 4
Published: about 4 years ago
10.3390/s21134546
Diagnostic of Operation Conditions and Sensor Faults Using Machine Learning in Sucker-Rod Pumping Wells
Cited by: 6
Author(s): João Nascimento, André Laurindo Maitelli, C. W. S. P. Maitelli, Anderson Luiz de Oliveira Cavalcanti
Software Mentions: 4
Published: over 4 years ago
10.1093/scan/nsaa141
HyPyP: a Hyperscanning Python Pipeline for inter-brain connectivity analysis
Cited by: 38
Author(s): Anaël Ayrolles, Florence Brun, Yi‐Ping Phoebe Chen, Amir Djalovski, Yann Beauxis, Richard Delorme, Thomas Bourgeron, Suzanne Dikker, Guillaume Dumas
Software Mentions: 4
Published: about 5 years ago
10.1371/journal.pcbi.1008347
Integrating across neuroimaging modalities boosts prediction accuracy of cognitive ability
Cited by: 30
Author(s): Javier Rasero, A. Sentis, Fang‐Cheng Yeh, Timothy Verstynen
Software Mentions: 4
Published: over 4 years ago
10.3389/fncel.2021.668230
Impaired Adaptation and Laminar Processing of the Oddball Paradigm in the Primary Visual Cortex of Fmr1 KO Mouse
Cited by: 4
Author(s): Alexandr Pak, Samuel T. Kissinger, Alexander A. Chubykin
Software Mentions: 4
Published: over 4 years ago
10.3389/fncom.2020.580632
DNNBrain: A Unifying Toolbox for Mapping Deep Neural Networks and Brains
Cited by: 11
Author(s): Xiayu Chen, Ming Zhou, Zhengxin Gong, Wei Xu, Xingyu Liu, Taicheng Huang, Zonglei Zhen, Jia Liu
Software Mentions: 4
Published: almost 5 years ago
10.1371/journal.pcbi.1008001
Longitudinal wastewater sampling in buildings reveals temporal dynamics of metabolites
Cited by: 2
Author(s): Ethan D. Evans, Dai Cl, Siavash Isazadeh, Shinkyu Park, Carlo Ratti, Eric J. Alm
Software Mentions: 4
Published: over 5 years ago
10.3390/s21093204
Hand Gesture Recognition Using EGaIn-Silicone Soft Sensors
Cited by: 10
Author(s): Sungtae Shin, Han Ul Yoon, Byung Hoon Yoo
Software Mentions: 4
Published: over 4 years ago
10.1371/journal.pcbi.1009014
Galaxy-ML: An accessible, reproducible, and scalable machine learning toolkit for biomedicine
Cited by: 8
Author(s): Qiang Gu, Anup Kumar, Simon Bray, Allison Creason, Alireza Khanteymoori, Vahid Jalili, Björn Grüning, Jeremy Goecks
Software Mentions: 4
Published: over 4 years ago
10.1186/s12864-020-6722-x
MethGET: web-based bioinformatics software for correlating genome-wide DNA methylation and gene expression
Cited by: 15
Author(s): Chin-Sheng Teng, Bing-Heng Wu, Ming‐Ren Yen, Pao‐Yang Chen
Software Mentions: 4
Published: over 5 years ago
10.3389/fbioe.2020.00959
What Has Been Trending in the Research of Polyhydroxyalkanoates? A Systematic Review
Cited by: 25
Author(s): Maciej Guzik, Tomasz Witko, Alexander Steinbüchel, Magdalena Wojnarowska, Mariusz Sołtysik, Sławomir Wawak
Software Mentions: 4
Published: about 5 years ago
10.3389/fcimb.2021.663068
Taxonomic and Functional Dysregulation in Salivary Microbiomes During Oral Carcinogenesis
Cited by: 7
Author(s): Jiung Wen Chen, Jer Horng Wu, Wei Fan Chiang, Yuh Ling Chen, Wei Wu, Li-Wha Wu
Software Mentions: 4
Published: about 4 years ago
10.3390/s21124172
Uplink vs. Downlink: Machine Learning-Based Quality Prediction for HTTP Adaptive Video Streaming
Cited by: 7
Author(s): Frank Loh, Fabian Poignée, Florian Wamser, Ferdinand Leidinger, Tobias Hoßfeld
Software Mentions: 4
Published: over 4 years ago
10.1371/journal.pcbi.1007348
Learning unsupervised feature representations for single cell microscopy images with paired cell inpainting
Cited by: 64
Author(s): Alex X. Lu, Oren Kraus, Sam Cooper, Alan M. Moses
Software Mentions: 4
Published: about 6 years ago
10.1038/s42003-020-01233-4
A gene prioritization method based on a swine multi-omics knowledgebase and a deep learning model
Cited by: 28
Author(s): Yuhua Fu, Jingya Xu, Zhenshuang Tang, Lu Wang, Yin Ding, Yu Fan, Dongdong Zhang, Fei Deng, Yanping Zhang, Haohao Zhang, Haiyan Wang, Wenhui Xing, Lilin Yin, Shilin Zhu, Mengjin Zhu, Mei Yu, Xinyun Li, Xiaolei Liu, Xiaohui Yuan, Zhao Song
Software Mentions: 4
Published: about 5 years ago
10.1038/s41598-021-94696-2
Improving prediction of COVID-19 evolution by fusing epidemiological and mobility data
Cited by: 25
Author(s): Santi García-Cremades, Juan Morales-García, Rocío Hernández-Sanjaime, Raquel Martínez‐España, Andrés Bueno-Crespo, Enrique Hernández-Orallo, José J. López-Espín, José M. Cecilia
Software Mentions: 4
Published: over 4 years ago
10.1186/s12864-015-2270-1
Comprehensive evaluation of AmpliSeq transcriptome, a novel targeted whole transcriptome RNA sequencing methodology for global gene expression analysis
Cited by: 66
Author(s): Wenli Li, Amy Turner, Praful Aggarwal, Andrea Matter, Erin Storvick, Donna K. Arnett, Ulrich Broeckel
Software Mentions: 4
Published: almost 10 years ago
10.1371/journal.pcbi.1008219
A simple, scalable approach to building a cross-platform transcriptome atlas
Cited by: 12
Author(s): Paul W. Angel, Nadia Rajab, Yidi Deng, Chris M. Pacheco, Tyrone Chen, Kim‐Anh Lê Cao, Jarny Choi, Christine A. Wells
Software Mentions: 4
Published: about 5 years ago
10.1371/journal.pcbi.1008914
WormPose: Image synthesis and convolutional networks for pose estimation in C. elegans
Cited by: 29
Author(s): Laetitia Hebert, Tosif Ahamed, Á. S. Costa, Liam O’Shaughnessy, Greg J. Stephens
Software Mentions: 4
Published: over 4 years ago
10.1186/s12859-017-1586-z
MOST: most-similar ligand based approach to target prediction
Cited by: 25
Author(s): Tao Huang, Hong Mi, Chengyuan Lin, Ling Zhao, Linda L. D. Zhong, Fengbin Liu, Ge Zhang, Aiping Lu, Zhaoxiang Bian
Software Mentions: 4
Published: over 8 years ago
10.1186/s12864-015-1491-7
Leaps and lulls in the developmental transcriptome of Dictyostelium discoideum
Cited by: 53
Author(s): Rafael D. Rosengarten, Balaji Santhanam, Danny Fuller, Mariko Katoh-Kurasawa, William F. Loomis, Blaž Zupan, Gad Shaulsky
Software Mentions: 4
Published: over 10 years ago
10.1093/bib/bbz170
Deep learning-based clustering approaches for bioinformatics
Cited by: 104
Author(s): Md. Rezaul Karim, Oya Beyan, Achille Zappa, Ivan G. Costa, Dietrich Rebholz‐Schuhmann, Michael Cochez, Stefan Decker
Software Mentions: 4
Published: almost 6 years ago
10.1371/journal.pcbi.1006520
Molecular characterization of breast and lung tumors by integration of multiple data types with functional sparse-factor analysis
Cited by: 13
Author(s): Tycho Bismeijer, Sander Canisius, Lodewyk Wessels
Software Mentions: 4
Published: about 7 years ago
10.1186/s13058-019-1159-3
On-treatment biomarkers can improve prediction of response to neoadjuvant chemotherapy in breast cancer
Cited by: 32
Author(s): Richard J. Bownes, Arran Turnbull, Carlos Martínez-Pérez, David Cameron, Andrew H. Sims, Olga Oikonomidou
Software Mentions: 4
Published: over 6 years ago
10.3389/fncom.2018.00056
Modern Machine Learning as a Benchmark for Fitting Neural Responses
Cited by: 52
Author(s): Ari S. Benjamin, Hugo L. Fernandes, Tucker Tomlinson, Pavan Ramkumar, Chris VerSteeg, Raeed H. Chowdhury, Lee E. Miller, Konrad Kording
Software Mentions: 4
Published: over 7 years ago
10.3390/s21041157
Machine Learning and Simulation-Optimization Coupling for Water Distribution Network Contamination Source Detection
Cited by: 14
Author(s): Luka Grbčić, Lado Kranjčević, Siniša Družeta
Software Mentions: 4
Published: over 4 years ago
10.7150/thno.55676
A panel of selected serum protein biomarkers for the detection of aggressive prostate cancer
Cited by: 12
Author(s): Jin Song, Shiyong Ma, Lori J. Sokoll, Rodrigo Vargas Eguez, Naseruddin Höti, Hui Zhang, Phaedre Mohr, Renu Dua, Dattatraya Patil, Kristen Douglas May, Sierra Williams, Rebecca S. Arnold, Martin G. Sanda, Daniel W. Chan, Zhen Zhang
Software Mentions: 4
Published: almost 5 years ago
10.1186/s12864-016-3320-z
Stable feature selection based on the ensemble L 1 -norm support vector machine for biomarker discovery
Cited by: 29
Author(s): Myungjin Moon, Kenta Nakai
Software Mentions: 4
Published: almost 9 years ago
10.1038/s41598-021-84003-4
Combined unsupervised-supervised machine learning for phenotyping complex diseases with its application to obstructive sleep apnea
Cited by: 12
Author(s): Eun Yeol, Jeong Whun Kim, Young-Min Lee, Sung Woo Cho, Heeyoung Kim, Jae Kyoung Kim
Software Mentions: 4
Published: over 4 years ago
10.1093/cercor/bhx138
Attention Selectively Reshapes the Geometry of Distributed Semantic Representation
Cited by: 87
Author(s): Samuel A. Nastase, Andrew C. Connolly, Nikolaas N. Oosterhof, Yaroslav O. Halchenko, J. Swaroop Guntupalli, Matteo Visconti di Oleggio Castello, Jason Gors, M. Ida Gobbini, James V. Haxby
Software Mentions: 4
Published: over 8 years ago
10.1186/s12859-018-2150-1
Identification of residue pairing in interacting β-strands from a predicted residue contact map
Cited by: 4
Author(s): Wenzhi Mao, Tong Wang, Wenxuan Zhang, H. Gong
Software Mentions: 4
Published: over 7 years ago
10.3390/cells10092300
Quasar: Easy Machine Learning for Biospectroscopy
Cited by: 39
Author(s): Marko Toplak, Stuart Read, Christophe Sandt, Ferenc Borondics
Software Mentions: 4
Published: about 4 years ago
10.1038/s41598-021-83922-6
Explainable AI reveals changes in skin microbiome composition linked to phenotypic differences
Cited by: 47
Author(s): Anna Paola Carrieri, Niina Haiminen, Sean Maudsley-Barton, Laura‐Jayne Gardiner, Barry Murphy, Andrew E. Mayes, Sarah Paterson, Sally Grimshaw, Martyn Winn, Cameron Shand, Panagiotis E. Hadjidoukas, Will Rowe, Stacy S. Hawkins, Ashley MacGuire-Flanagan, Jane Tazzioli, John Kenny, Laxmi Parida, Michael Hoptroff, Edward O. Pyzer‐Knapp
Software Mentions: 4
Published: over 4 years ago
10.1038/s41598-020-74500-3
SHIFT: speedy histological-to-immunofluorescent translation of a tumor signature enabled by deep learning
Cited by: 25
Author(s): Erik Burlingame, Mary McDonnell, Geoffrey F. Schau, Guillaume Thibault, Christian Lanciault, Terry K. Morgan, Brett Johnson, Christopher L. Corless, Joe W. Gray, Young Hwan Chang
Software Mentions: 4
Published: about 5 years ago
10.1016/j.celrep.2015.12.082
Single-Cell RNA-Sequencing Reveals a Continuous Spectrum of Differentiation in Hematopoietic Cells
Cited by: 157
Author(s): Iain C. Macaulay, Valentine Svensson, Charlotte Labalette, Lauren Ferreira, Fiona Hamey, Thierry Voet, Sarah A. Teichmann, Ana Cvejic
Software Mentions: 4
Published: almost 10 years ago
10.1016/j.cels.2019.11.006
Guiding the Refinement of Biochemical Knowledgebases with Ensembles of Metabolic Networks and Machine Learning
Cited by: 44
Author(s): Gregory L. Medlock, Jason A. Papin
Software Mentions: 4
Published: almost 6 years ago
10.1038/s41598-020-77063-5
Machine learning approaches reveal genomic regions associated with sugarcane brown rust resistance
Cited by: 18
Author(s): Alexandre Hild Aono, Everardo Andrade da Costa, Hugo Vianna Silva Rody, James Shiniti Nagai, Ricardo José Gonzaga Pimenta, Melina Cristina Mancini, Fernanda Raquel Camilo dos Santos, Luciana Rossini Pinto, Marcos Guimarães de Andrade Landell, Anete Pereira de Souza, Reginaldo Massanobu Kuroshu
Software Mentions: 4
Published: almost 5 years ago
10.1371/journal.pcbi.1006498
Full-Length Envelope Analyzer (FLEA): A tool for longitudinal analysis of viral amplicons
Cited by: 5
Author(s): Kemal Eren, Steven Weaver, Robert Ketteringham, Morné Valentyn, Melissa Smith, Venkatesh Kumar, Sanjay Mohan, Sergei L. Kosakovsky Pond, Ben Murrell
Software Mentions: 4
Published: almost 7 years ago
10.1371/journal.pcbi.1008377
Active probing to highlight approaching transitions to ictal states in coupled neural mass models
Cited by: 2
Author(s): Vinícius Rezende Carvalho, Márcio Flávio Dutra Moraes, Sydney S. Cash, Eduardo M. A. M. Mendes
Software Mentions: 4
Published: almost 5 years ago
10.1186/s12859-019-2612-0
Barcode identification for single cell genomics
Cited by: 15
Author(s): Akshay Tambe, Lior Pachter
Software Mentions: 4
Published: almost 7 years ago
10.1186/s12872-021-02147-7
Integration of transcriptomic data identifies key hallmark genes in hypertrophic cardiomyopathy
Cited by: 2
Author(s): Jing Xu, Xiangdong Liu, Qiang Dai
Software Mentions: 4
Published: over 4 years ago
10.3390/cancers13163965
Multicenter DSC–MRI-Based Radiomics Predict IDH Mutation in Gliomas
Cited by: 21
Author(s): Georgios C. Manikis, Georgios Ioannidis, Loizos Siakallis, Katerina Nikiforaki, Cassia Michael, Diana Vozlic, Katarina Surlan-Popović, Max Wintermark, Sotirios Bisdas, Kostas Marias
Software Mentions: 4
Published: about 4 years ago
10.1016/j.mex.2020.101208
Optimization methods for the imputation of missing values in Educational Institutions Data
Cited by: 0
Author(s): Davide Aureli, Renato Bruni, Cinzia Daraio
Software Mentions: 4
Published: almost 5 years ago
10.1371/journal.pcbi.1008390
Ten simple rules for writing a paper about scientific software
Cited by: 1
Author(s): Joseph D. Romano, Jason H. Moore
Software Mentions: 4
Published: almost 5 years ago
10.1016/j.chom.2018.06.005
Mother-to-Infant Microbial Transmission from Different Body Sites Shapes the Developing Infant Gut Microbiome
Cited by: 714
Author(s): Pamela Ferretti, Edoardo Pasolli, Adrian Tett, Francesco Asnicar, Valentina Gorfer, Sabina Fedi, Federica Armanini, Duy Tin Truong, Serena Manara, Moreno Zolfo, Francesco Beghini, Roberto Bertorelli, Veronica De Sanctis, Ilaria Bariletti, Rosarita Canto, Rosanna Clementi, Marina Cologna, Tiziana Crifò, Giuseppina Cusumano, Stefania Gottardi, Claudia Innamorati, Caterina Masè, Daniela Postai, Daniela Savoi, Sabrina Duranti, Gabriele Andrea Lugli, Leonardo Mancabelli, Francesca Turroni, Chiara Ferrario, Christian Milani, Marta Mangifesta, Rosaria Anzalone, Alice Viappiani, Moran Yassour, Hera Vlamakis, Ramnik J. Xavier, María Carmen Collado, Omry Koren, Saverio Tateo, Massimo Soffiati, Anna Pedrotti, Marco Ventura, Curtis Huttenhower, Peer Bork, Nicola Segata
Software Mentions: 4
Published: over 7 years ago
10.1371/journal.pcbi.1008244
Alcoholic liver disease: A registry view on comorbidities and disease prediction
Cited by: 10
Author(s): Dhouha Grissa, Ditlev Nytoft Rasmussen, Aleksander Krag, Søren Brunak, Lars Juhl Jensen
Software Mentions: 4
Published: about 5 years ago
10.1038/s41598-020-64270-3
PATH - Prediction of Amyloidogenicity by Threading and Machine Learning
Cited by: 17
Author(s): Jakub W Wojciechowski, Małgorzata Kotulska
Software Mentions: 4
Published: over 5 years ago
10.1038/s41598-020-64870-z
Correlation-centred variable selection of a gene expression signature to predict breast cancer metastasis
Cited by: 5
Author(s): Shiori Hikichi, Masahiro Sugimoto, Masaru Tomita
Software Mentions: 4
Published: over 5 years ago
10.1038/s41598-019-55978-y
Rumen Bacteria and Serum Metabolites Predictive of Feed Efficiency Phenotypes in Beef Cattle
Cited by: 30
Author(s): Brooke A. Clemmons, Cameron Martino, Joshua B. Powers, Shawn R. Campagna, Brynn H. Voy, Dallas R. Donohoe, James Gaffney, Mallory Embree, Phillip R. Myer
Software Mentions: 4
Published: almost 6 years ago
10.1186/s40168-018-0470-z
Optimizing taxonomic classification of marker-gene amplicon sequences with QIIME 2’s q2-feature-classifier plugin
Cited by: 2,605
Author(s): Nicholas A. Bokulich, Benjamin Kaehler, Jai Ram Rideout, Matthew R. Dillon, Evan Bolyen, Rob Knight, Gavin A. Huttley, J. Gregory Caporaso
Software Mentions: 4
Published: over 7 years ago
10.3389/fgene.2019.01182
Graph Embedding Deep Learning Guides Microbial Biomarkers' Identification
Cited by: 19
Author(s): Qiang Zhu, Xingpeng Jiang, Qing Zhu, Min Pan, Tingting He
Software Mentions: 4
Published: almost 6 years ago
10.3390/biom11040549
Conformational Plasticity-Rigidity Axis of the Coagulation Factor VII Zymogen Elucidated by Atomistic Simulations of the N-Terminally Truncated Factor VIIa Protease Domain
Cited by: 6
Author(s): Jesper J. Madsen, Ole H. Olsen
Software Mentions: 4
Published: over 4 years ago
10.3390/biom10040524
Uncovering Prognosis-Related Genes and Pathways by Multi-Omics Analysis in Lung Cancer
Cited by: 30
Author(s): Ken Asada, Kazuma Kobayashi, Samuel Joutard, Masashi Tubaki, Satoshi Takahashi, Ken Takasawa, Masaaki Komatsu, Syuzo Kaneko, Jun Sese, Ryuji Hamamoto
Software Mentions: 4
Published: over 5 years ago
10.1371/journal.pcbi.1009183
COVIDomic: A multi-modal cloud-based platform for identification of risk factors associated with COVID-19 severity
Cited by: 5
Author(s): В. А. Наумов, Evgeny Putin, Stefan Pushkov, E. Kozlova, Konstantin Romantsov, Alexander Kalashnikov, Fedor Galkin, Nina Tihonova, Anastasia Shneyderman, Egor Galkin, Arsenii Zinkevich, Stephanie M. Cope, Ramanathan Sethuraman, Tudor I. Oprea, Alexander T. Pearson, Savaş Tay, Nishant Agrawal, Alexey Dubovenko, Quentin Vanhaelen, Ivan V. Ozerov, Alex Aliper, Evgeny Izumchenko, Alex Zhavoronkov
Software Mentions: 4
Published: over 4 years ago
10.1016/j.celrep.2019.08.077
Modeling Cell-Cell Interactions from Spatial Molecular Data with Spatial Variance Component Analysis
Cited by: 129
Author(s): Damien Arnol, Denis Schapiro, Bernd Bodenmiller, Julio Sáez-Rodríguez, Oliver Stegle
Software Mentions: 4
Published: about 6 years ago
10.1371/journal.pcbi.1008689
Data-driven method to infer the seizure propagation patterns in an epileptic brain from intracranial electroencephalography
Cited by: 27
Author(s): Viktor Sip, Meysam Hashemi, Anirudh Nihalani Vattikonda, Michael Woodman, Huifang Wang, Julia Scholly, Samuel Médina Villalon, Maxime Guye, Fabricē Bartolomei, Viktor K. Jirsa
Software Mentions: 4
Published: over 4 years ago
10.3390/cancers13153768
Machine Learning Approaches to Classify Primary and Metastatic Cancers Using Tissue of Origin-Based DNA Methylation Profiles
Cited by: 12
Author(s): Vijayachitra Modhukur, Shakshi Sharma, Mainak Mondal, Ankita Lawarde, Keiu Kask, Rajesh Sharma, Andres Salumets
Software Mentions: 4
Published: over 4 years ago
10.1038/s41598-019-39142-0
Unlocking HDR-mediated nucleotide editing by identifying high-efficiency target sites using machine learning
Cited by: 30
Author(s): Aidan O’Brien, Laurence O.W. Wilson, Gaétan Burgio, Denis C. Bauer
Software Mentions: 4
Published: over 6 years ago
10.7554/eLife.44889
Identification of compounds that rescue otic and myelination defects in the zebrafish adgrg6 (gpr126) mutant
Cited by: 19
Author(s): Elvira Diamantopoulou, Sarah Baxendale, Antonio de la Vega de León, Anzar Asad, Celia J. Holdsworth, Leïla Abbas, Valerie J. Gillet, Giselle R. Wiggin, Tanya T. Whitfield
Software Mentions: 4
Published: over 6 years ago
10.3390/cancers13102366
Sequence Neighborhoods Enable Reliable Prediction of Pathogenic Mutations in Cancer Genomes
Cited by: 6
Author(s): Shayantan Banerjee, Karthik Raman, Balaraman Ravindran
Software Mentions: 4
Published: over 4 years ago
10.1186/s12859-021-04278-2
Single-cell classification using graph convolutional networks
Cited by: 19
Author(s): Tianyu Wang, Junqiang Bai, Sheida Nabavi
Software Mentions: 4
Published: over 4 years ago
10.1038/s41598-018-34162-8
Remotely-sensed productivity clusters capture global biodiversity patterns
Cited by: 16
Author(s): Nicholas C. Coops, Sean P. Kearney, Douglas K. Bolton, Volker C. Radeloff
Software Mentions: 4
Published: about 7 years ago
10.1371/journal.pbio.3001306
Dynamic landscape of protein occupancy across the Escherichia coli chromosome
Cited by: 18
Author(s): Peter L. Freddolino, Haley M. Amemiya, Thomas J. Goss, Saeed Tavazoie
Software Mentions: 4
Published: over 4 years ago
10.1186/s12938-020-00795-y
Optimal length of R–R interval segment window for Lorenz plot detection of paroxysmal atrial fibrillation by machine learning
Cited by: 6
Author(s): Masaya Kisohara, Yoshio Masuda, Emi Yuda, Naonori Ueda, Junichiro Hayano
Software Mentions: 4
Published: over 5 years ago
10.1186/s12859-021-04070-2
Large-scale labeling and assessment of sex bias in publicly available expression data
Cited by: 10
Author(s): Emily Flynn, Annie C. Y. Chang, Russ B. Altman
Software Mentions: 4
Published: over 4 years ago
10.1371/journal.pone.0249583
Innovation indicators based on firm websites—Which website characteristics predict firm-level innovation activity?
Cited by: 8
Author(s): Janna Axenbeck, Patrick Breithaupt
Software Mentions: 4
Published: over 4 years ago
10.1038/s41598-018-27189-4
A Nasal Brush-based Classifier of Asthma Identified by Machine Learning Analysis of Nasal RNA Sequence Data
Cited by: 47
Author(s): Gaurav Pandey, O.P. Pandey, Angela Rogers, Mehmet Eren Ahsen, Gabriel E. Hoffman, Benjamin A. Raby, Scott T. Weiss, Eric E. Schadt, Supinda Bunyavanich
Software Mentions: 4
Published: over 7 years ago
10.1186/s13062-018-0211-z
Profiling microbial strains in urban environments using metagenomic sequencing data
Cited by: 26
Author(s): Moreno Zolfo, Francesco Asnicar, Paolo Manghi, Edoardo Pasolli, Adrian Tett, Nicola Segata
Software Mentions: 4
Published: almost 8 years ago
10.1038/s41598-017-12730-8
Doping colloidal bcc crystals — interstitial solids and meta-stable clusters
Cited by: 8
Author(s): Ruben Higler, Joris Sprakel
Software Mentions: 4
Published: about 8 years ago
10.1038/srep34838
lncScore: alignment-free identification of long noncoding RNA from assembled novel transcripts
Cited by: 39
Author(s): Jian Zhao, Xiaofeng Song, Kai Wang
Software Mentions: 4
Published: about 9 years ago
10.1371/journal.pone.0228422
Data-driven diagnosis of spinal abnormalities using feature selection and machine learning algorithms
Cited by: 42
Author(s): Md. Raihan-Al-Masud, M. Rubaiyat Hossain Mondal
Software Mentions: 4
Published: over 5 years ago
10.1186/s12859-021-04164-x
Comprehensive machine-learning-based analysis of microRNA–target interactions reveals variable transferability of interaction rules across species
Cited by: 5
Author(s): Gilad Ben Or, Isana Veksler-Lublinsky
Software Mentions: 4
Published: over 4 years ago
10.1371/journal.pone.0243915
On transformative adaptive activation functions in neural networks for gene expression inference
Cited by: 5
Author(s): Vladimír Kunc, Jǐŕı Kléma
Software Mentions: 4
Published: almost 5 years ago
10.1038/srep36493
Big genomics and clinical data analytics strategies for precision cancer prognosis
Cited by: 18
Author(s): Ghim Siong Ow, Vladimir A. Kuznetsov
Software Mentions: 4
Published: almost 9 years ago