Projects: pypi: scikit-learn

https://packages.ecosyste.ms/registries/pypi.org/packages/scikit-learn

A set of python modules for machine learning and data mining
72 versions
Latest release: about 2 years ago
5,918 dependent packages
43,777,417 downloads last month

Enhanced Analysis
Educational Contributors: a.joly@ulg.ac.be vanderplas@astro.washington.edu bh00038@cvplws63.eps.surrey.ac.uk ha258@cornell.edu satra@mit.edu zl2480@columbia.edu pinto@alum.mit.edu jz4721@nyu.edu matteo.visconti.gr@dartmouth.edu vighneshbirodkar@nyu.edu robert.l.marchman@dartmouth.edu rs2715@stern.nyu.edu claire.savard@colorado.edu aaaagrawal@iitb.ac.in ihaque@cs.stanford.edu rspeer@mit.edu mluessi@nmr.mgh.harvard.edu amitibo@tx.technion.ac.il ericchang2017@u.northwestern.edu jkarno@seas.upenn.edu minghui.liu@trincoll.edu m.lyra@sussex.ac.uk andrew.knyazev@ucdenver.edu lamb@cs.stanford.edu camilo@neurostat.mit.edu martino.sorbaro@ed.ac.uk t.sheerman-chase@surrey.ac.uk cgohlke@uci.edu batulaa@drexel.edu kcarnold@alum.mit.edu apw@seas.harvard.edu abie@alum.mit.edu rossbar@berkeley.edu alceballosa@unal.edu.co fhoang7@berkeley.edu hechen@seas.upenn.edu stefan@sun.ac.za deepyaman.datta@utexas.edu rebekah.kim@columbia.edu shubham.bhardwaj2015@vit.ac.in slama@berkeley.edu nisingh@wharton.upenn.edu kanikas3@vt.edu jdlabal@stanford.edu kjells@uw.edu markus.loning.17@ucl.ac.uk k_nzw@klis.tsukuba.ac.jp dkirkby@uci.edu balawson@bu.edu c.brummitt@columbia.edu choo8@illinois.edu giorgio.patrini@anu.edu.au shangwuy@andrew.cmu.edu rafael.possas@sydney.edu.au olsonran@msu.edu brian.mcfee@nyu.edu naj273@nyu.edu dgrusak@trinity.edu emd222@cornell.edu voth0@sewanee.edu trishnendu.dd2014@cs.iiests.ac.in apeng@berkeley.edu boucher@cs.umass.edu lunt@ctbp.ucsd.edu bakhbari@mgh.harvard.edu piraka@brandeis.edu neal.lathia@cl.cam.ac.uk razhoshia@post.bgu.ac.il michal.romaniuk06@ic.ac.uk m.batchkarov@sussex.ac.uk lemin@cs.colostate.edu rudvlf0413@korea.ac.kr vredev16@msu.edu raschkas@msu.edu ali.baharev@univie.ac.at a.krasoulis@sms.ed.ac.uk arokem@berkeley.edu gabrielvr@al.insper.edu.br eric.sanchez1234@email.bakersfieldcollege.edu fcchou@stanford.edu rofuyu@cs.utexas.edu glemaitre@visor.udg.edu naoyaiijima@hiroshima-u.ac.jp ayushgup@iitk.ac.in joel@vlan-2666-10-17-16-173.staff.wireless.sydney.edu.au jam7w2@mail.missouri.edu j.hale09@imperial.ac.uk tw991@nyu.edu patel_zeel@iitgn.ac.in vincent.lostanlen@nyu.edu stvjc@channing.harvard.edu ritchieng@u.nus.edu bansalsi@usc.edu rbarnes@umn.edu rrohan@cs.cmu.edu liutong.zhou@columbia.edu mdh386@nyu.edu mlf419@nyu.edu shreyave@usc.edu jin.siy@northeastern.edu samuel_ainsworth@brown.edu cwijes1@lsu.edu wadawson@ucdavis.edu xinyuliu@umich.edu rz258@cornell.edu daniel.mallia21@myhunter.cuny.edu argriffi@ncsu.edu filipj@umich.edu kms15@case.edu sam.dixon@berkeley.edu khong008@e.ntu.edu.sg jnelso11@gmu.edu jclawton@umich.edu jaehyunahn@sogang.ac.kr ijpulidos@unal.edu.co gstupp@scripps.edu justhube@umich.edu noamkeidar@campus.technion.ac.il nityamd@nyu.edu css459@nyu.edu alyee@ucsd.edu andersk@mit.edu dhanus@mit.edu coreylevinson@uchicago.edu cailean.carter@quadram.ac.uk bral4884@colorado.edu dschult@colgate.edu dpwe@ee.columbia.edu dylan.cashman@tufts.edu pawelsendyk@berkeley.edu qzhang90@gatech.edu mhaberla@calpoly.edu saketk@student.unimelb.edu.au eunjikim@dm.snu.ac.kr erinrhof@uw.edu ksivaman@purdue.edu garmstrong@ucsd.edu konstantin.shmelkov@polytechnique.edu e175774@ie.u-ryukyu.ac.jp hermidal@cs.umd.edu jbearer@hmc.edu jmarin@csail.mit.edu
Repository Activity:
Repository Owner: scikit-learn (organization)
Repositories related to the scikit-learn Python machine learning library. Academic
README Analysis:
Science Score: 100/100
Starting Score: 100 points
Bonuses:
  • +2840 Educational commit emails
    142 contributors with educational email addresses
  • +20 Academic repository owner
    Repository owned by academic institution
  • +15 Institutional repository owner
    Repository owned by research institution
  • +6 Science terms in README
    3 scientific terms found in README
Penalties:
  • -10 PyPI ecosystem
    General-purpose ecosystem

Very Likely Science (100)

Papers Mentioning scikit-learn 2,431

10.3390/s21051740
Mobility Prediction Using a Weighted Markov Model Based on Mobile User Classification
Cited by: 34
Author(s): Ming Yan, Shuijing Li, Chien Aun Chan, Yinghua Shen, Ying Yu
Software Mentions: 1
Published: over 4 years ago
10.3390/s21061957
Identifying Fall Risk Predictors by Monitoring Daily Activities at Home Using a Depth Sensor Coupled to Machine Learning Algorithms
Cited by: 12
Author(s): Amandine Dubois, Titus Bihl, Jean‐Pierre Bresciani
Software Mentions: 1
Published: over 4 years ago
10.3390/s21061994
Distinguishing Planting Structures of Different Complexity from UAV Multispectral Images
Cited by: 10
Author(s): Qi Ma, Wenting Han, Shenjin Huang, Sining Dong, Guang Li, Haipeng Chen
Software Mentions: 1
Published: over 4 years ago
10.3390/s21072298
Prediction of Fruity Aroma Intensity and Defect Presence in Virgin Olive Oil Using an Electronic Nose
Cited by: 17
Author(s): Pablo Cano Marchal, Chiara Sanmartin, S. Satorres Martínez, Juan Gómez Ortega, Fabio Mencarelli, Javier Gámez García
Software Mentions: 1
Published: over 4 years ago
10.3390/s21072293
Hyperspectral Classification of Blood-Like Substances Using Machine Learning Methods Combined with Genetic Algorithms in Transductive and Inductive Scenarios
Cited by: 3
Author(s): F.M. Palka, Wojciech Książek, Paweł Pławiak, Michał Romaszewski, Kamil Książek
Software Mentions: 1
Published: over 4 years ago
10.3390/s21082647
High-Accuracy Guide Star Catalogue Generation with a Machine Learning Classification Algorithm
Cited by: 4
Author(s): Jianming Zhang, Junxiang Lian, Zhaoxiang Yi, Shuwang Yang, Ying Shan
Software Mentions: 1
Published: over 4 years ago
10.1007/s00216-021-03179-w
Spatially aware clustering of ion images in mass spectrometry imaging data using deep learning
Cited by: 16
Author(s): Wanqiu Zhang, Marc Claesen, Thomas Moerman, M. Reid Groseclose, Etienne Waelkens, Bart De Moor, Nico Verbeeck
Software Mentions: 1
Published: over 4 years ago
10.3390/s21082849
Evolutionary Algorithm for Improving Decision Tree with Global Discretization in Manufacturing
Cited by: 7
Author(s): Sungbum Jun
Software Mentions: 1
Published: over 4 years ago
10.3390/s21092979
Additive Ensemble Neural Network with Constrained Weighted Quantile Loss for Probabilistic Electric-Load Forecasting
Cited by: 12
Author(s): Manuel López-Martín, Antonio Sánchez-Esguevillas, Luís Hernández-Callejo, Juan Ignacio Arribas, Belén Carro
Software Mentions: 1
Published: over 4 years ago
10.3390/s21093012
A Survey of Spoofer Detection Techniques via Radio Frequency Fingerprinting with Focus on the GNSS Pre-Correlation Sampled Data
Cited by: 7
Author(s): Wenbo Wang, Inmaculada Sánchez, Gianluca Caparra, Andy McKeown, T. Whitworth, Elena Simona Lohan
Software Mentions: 1
Published: over 4 years ago
10.3390/s21103338
Developing Relative Humidity and Temperature Corrections for Low-Cost Sensors Using Machine Learning
Cited by: 12
Author(s): Ivan Vajs, Dejan Drajić, Nenad Gligorić, Ilija Radovanović, Ivan Popović
Software Mentions: 1
Published: over 4 years ago
10.1186/s13195-020-00715-1
Combination of snapshot hyperspectral retinal imaging and optical coherence tomography to identify Alzheimer’s disease patients
Cited by: 21
Author(s): Sophie Lemmens, Toon Van Craenendonck, Jan Van Eijgen, Lies De Groef, Rose Bruffaerts, Danilo Andrade De Jesus, Wouter Charle, Murali Jayapala, Gordana Sunaric-Mégevand, Arnout Standaert, Jan Theunis, Karel Van Keer, Mathieu Vandenbulcke, Lieve Moons, Rik Vandenberghe, Patrick De Boever, Ingeborg Stalmans
Software Mentions: 1
Published: almost 5 years ago
10.3390/s21124212
A Framework for Continuous Authentication Based on Touch Dynamics Biometrics for Mobile Banking Applications
Cited by: 8
Author(s): Priscila Morais Argôlo Bonfim Estrela, Robson de Oliveira Albuquerque, Dino Macedo Amaral, William Ferreira Giozza, Rafael Timóteo de Sousa Júnior
Software Mentions: 1
Published: over 4 years ago
10.3390/s21124205
A Spatio-Temporal Ensemble Deep Learning Architecture for Real-Time Defect Detection during Laser Welding on Low Power Embedded Computing Boards
Cited by: 25
Author(s): Christian Knaak, Jakob von Eßen, Moritz Kröger, Frederic Schulze, Peter Abels, Arnold Gillner
Software Mentions: 1
Published: over 4 years ago
10.3390/s21134605
Received Signal Strength Fingerprinting-Based Indoor Location Estimation Employing Machine Learning
Cited by: 24
Author(s): Ladislav Polák, Stanislav Rozum, Martin Slanina, Tomáš Bravenec, Tomáš Fryza, Aggelos Pikrakis
Software Mentions: 1
Published: over 4 years ago
10.1186/s12859-017-1817-3
Segmentation and classification of two-channel C. elegans nucleus-labeled fluorescence images
Cited by: 7
Author(s): Mengdi Zhao, Jie An, Haiwen Li, Jiazhi Zhang, Shang-Tong Li, Xuemei Li, Meng‐Qiu Dong, Heng Mao, Louis Tao
Software Mentions: 1
Published: about 8 years ago
10.1186/s13195-021-00826-3
Artificial intelligence-based computational framework for drug-target prioritization and inference of novel repositionable drugs for Alzheimer’s disease
Cited by: 23
Author(s): Shingo Tsuji, Takeshi Hase, Ayako Yachie‐Kinoshita, Taiko Nishino, Samik Ghosh, Masataka Kikuchi, Kuniyasu Shimokawa, Hiroyuki Aburatani, Hiroaki Kitano, Hiroshi Tanaka
Software Mentions: 1
Published: over 4 years ago
10.3390/s21134328
Crop Classification Based on Red Edge Features Analysis of GF-6 WFV Data
Cited by: 21
Author(s): Yupeng Kang, Qingyan Meng, Miao Liu, Youfeng Zou, Xuemiao Wang
Software Mentions: 1
Published: over 4 years ago
10.7554/eLife.68980
Decoding the brain state-dependent relationship between pupil dynamics and resting state fMRI signal fluctuation
Cited by: 9
Author(s): Filip Sobczak, Patricia Pais‐Roldán, Kengo Takahashi, Xin Yu
Software Mentions: 1
Published: about 4 years ago
10.7554/eLife.62514
Molecular mechanism for direct actin force-sensing by α-catenin
Cited by: 54
Author(s): Lin Mei, Santiago Espinosa de los Reyes, Matthew J. Reynolds, Rachel Leicher, Shixin Liu, Gregory M. Alushin
Software Mentions: 1
Published: about 5 years ago
10.3390/s21144716
Application of Machine Learning for Fenceline Monitoring of Odor Classes and Concentrations at a Wastewater Treatment Plant
Cited by: 12
Author(s): Federico Cangialosi, Edoardo Bruno, Gabriella De Santis
Software Mentions: 1
Published: over 4 years ago
10.3390/s21144929
Crack Detection in Images of Masonry Using CNNs
Cited by: 12
Author(s): Mitchell J. Hallee, Rebecca Napolitano, Wesley F. Reinhart, Branko Glišić
Software Mentions: 1
Published: over 4 years ago
10.1186/s13195-021-00886-5
Predicting progression and cognitive decline in amyloid-positive patients with Alzheimer’s disease
Cited by: 10
Author(s): Hákon Valur Dansson, Lena Stempfle, Hildur Egilsdóttir, Alexander Schliep, Erik Portelius, Kaj Blennow, Henrik Zetterberg, Fredrik Johansson
Software Mentions: 1
Published: about 4 years ago
10.3390/s21155234
Forecasting of Typhoon-Induced Wind-Wave by Using Convolutional Deep Learning on Fused Data of Remote Sensing and Ground Measurements
Cited by: 9
Author(s): Chih-Chiang Wei, Hao‐Chun Chang
Software Mentions: 1
Published: over 4 years ago
10.3390/s21165595
Use of Hyperspectral Imaging for the Quantification of Organic Contaminants on Copper Surfaces for Electronic Applications
Cited by: 2
Author(s): Tim Englert, Florian Gruber, Jan Stiedl, Simon Green, Timo Jacob, Karsten Rebner, Wulf Grählert
Software Mentions: 1
Published: about 4 years ago
10.3390/s21175868
Development of a Low-Cost Electronic Nose for Detection of Pathogenic Fungi and Applying It to Fusarium oxysporum and Rhizoctonia solani
Cited by: 13
Author(s): Piotr Borowik, Ludwik Adamowicz, Rafał Tarakowski, Przemysław Wacławik, Tomasz Oszako, Sławomir Ślusarski, Miłosz Tkaczyk
Software Mentions: 1
Published: about 4 years ago
10.3390/s21175694
CAPformer: Pedestrian Crossing Action Prediction Using Transformer
Cited by: 11
Author(s): Javier Lorenzo, Ignacio Parra Alonso, Rubén Izquierdo, Augusto Luis Ballardini, Ana Jesús Hernández, David Fernández Llorca, Miguel Ángel Sotelo
Software Mentions: 1
Published: about 4 years ago
10.3390/s21175923
Object Positioning Algorithm Based on Multidimensional Scaling and Optimization for Synthetic Gesture Data Generation
Cited by: 2
Author(s): Borja Saez-Mingorance, Antonio Escobar-Molero, Javier Mèndez, Encarnación Castillo, Diego P. Morales
Software Mentions: 1
Published: about 4 years ago
10.1186/s13015-021-00197-2
A novel method for inference of acyclic chemical compounds with bounded branch-height based on artificial neural networks and integer programming
Cited by: 4
Author(s): Naveed Ahmed Azam, Jianshen Zhu, Yanming Sun, Yu Shi, Aleksandar Shurbevski, Liang Zhao, Hiroshi Nagamochi, Tatsuya Akutsu
Software Mentions: 1
Published: about 4 years ago
10.3390/s21186229
A Cost-Effective CNN-LSTM-Based Solution for Predicting Faulty Remote Water Meter Reading Devices in AMI Systems
Cited by: 4
Author(s): Jaeseung Lee, Woojin Choi, Jibum Kim
Software Mentions: 1
Published: about 4 years ago
10.1186/s12859-021-04291-5
Feature selection for RNA cleavage efficiency at specific sites using the LASSO regression model in Arabidopsis thaliana
Cited by: 11
Author(s): Daishin Ueno, Harunori Kawabe, Satoshi Yamasaki, Taku Demura, Ko Kato
Software Mentions: 1
Published: over 4 years ago
10.1016/j.str.2018.01.016
Disease Variants of FGFR3 Reveal Molecular Basis for the Recognition and Additional Roles for Cdc37 in Hsp90 Chaperone System
Cited by: 13
Author(s): Tom D. Bunney, Alison J. Inglis, Domenico Sanfelice, Brendan Farrell, Christopher J. Kerr, Gary S. Thompson, Glenn R. Masson, N. Thiyagarajan, Dmitri I. Svergun, Roger L. Williams, Alexander L. Breeze, Matilda Katan
Software Mentions: 1
Published: over 7 years ago
10.1186/s13643-021-01640-6
Iterative guided machine learning-assisted systematic literature reviews: a diabetes case study
Cited by: 7
Author(s): John Zimmerman, Robin Soler, James Lavinder, Murphy Sarah, Charisma Y. Atkins, LaShonda R. Hulbert, Richard Lusk, Boon Peng Ng
Software Mentions: 1
Published: over 4 years ago
10.7554/eLife.63035
Canonical goal-selective representations are absent from prefrontal cortex in a spatial working memory task requiring behavioral flexibility
Cited by: 13
Author(s): Claudia Böhm, Albert K. Lee
Software Mentions: 1
Published: almost 5 years ago
10.3390/toxins11060346
Recombinant Antibodies against Mycolactone
Cited by: 8
Author(s): L. Naranjo, Fortunato Ferrara, Nicolas Blanchard, Caroline Demangel, Sara D’Angelo, Andre A. Teixera, Andrew Bradbury
Software Mentions: 1
Published: over 6 years ago
10.1038/s41398-018-0098-6
Brain-specific functional relationship networks inform autism spectrum disorder gene prediction
Cited by: 45
Author(s): Marlena Duda, Hongjiu Zhang, Hongdong Li, Dennis P. Wall, Margit Burmeister, Yuanfang Guan
Software Mentions: 1
Published: over 7 years ago
10.1038/s41398-020-0684-2
Development of an early-warning system for high-risk patients for suicide attempt using deep learning and electronic health records
Cited by: 48
Author(s): Le Zheng, Oliver Wang, Shiying Hao, Chengyin Ye, Modi Liu, Minjie Xia, Alex N. Sabo, Liliana Markovic, Frank Stearns, Laura Kanov, Karl G. Sylvester, Eric Widen, Doff B. McElhinney, Wei Zhang, Jiayu Liao, Xuefeng B. Ling
Software Mentions: 1
Published: over 5 years ago
10.1038/s41398-020-00867-6
Daily estimates of clinical severity of symptoms in bipolar disorder from smartphone-based self-assessments
Cited by: 10
Author(s): Jonas Busk, Maria Faurholt‐Jepsen, Mads Frost, Jakob E. Bardram, Lars Vedel Kessing, Ole Winther
Software Mentions: 1
Published: over 5 years ago
10.1038/s41398-020-01045-4
Defining data-driven subgroups of obsessive–compulsive disorder with different treatment responses based on resting-state functional connectivity
Cited by: 14
Author(s): Seo‐Young Kwak, Minah Kim, Taekwan Kim, Yoobin Kwak, Sae-Sook Oh, Silvia Kyungjin Lho, Sun Young Moon, Tae Young Lee, Jun Soo Kwon
Software Mentions: 1
Published: about 5 years ago
10.1186/s12859-017-1879-2
A boosting approach for prediction of protein-RNA binding residues
Cited by: 35
Author(s): Yongjun Tang, Diwei Liu, Zixiang Wang, Ting Wen, Lei Deng
Software Mentions: 1
Published: about 8 years ago
10.1128/mBio.00915-18
Candida albicans-Induced Epithelial Damage Mediates Translocation through Intestinal Barriers
Cited by: 118
Author(s): Stefanie Allert, Toni M. Förster, Carl-Magnus Svensson, Jonathan P. Richardson, Tony Pawlik, Betty Hebecker, Sven Rudolphi, Marc Juraschitz, Martin Schaller, Mariana Blagojevic, Joachim Morschhäuser, Marc Thilo Figge, Ilse D. Jacobsen, Julian R. Naglik, Lydia Kasper, Selene Mogavero, Bernhard Hube
Software Mentions: 1
Published: over 7 years ago
10.1371/journal.pcbi.1008184
Machine learning assisted intraoperative assessment of brain tumor margins using HRMAS NMR spectroscopy
Cited by: 12
Author(s): Doruk Cakmakci, Emin Onur Karakaslar, Elisa Ruhland, Marie‐Pierre Chenard, F. Proust, Martial Piotto, Izzie Jacques Namer, A. Ercüment Çiçek
Software Mentions: 1
Published: almost 5 years ago
10.1371/journal.pcbi.1008100
Local field potentials in a pre-motor region predict learned vocal sequences
Cited by: 4
Author(s): Daril E. Brown, Jairo Ismahar Chavez, Derek Hung Nguyen, Adam Kadwory, Bradley Voytek, Ezequiel M. Arneodo, Timothy Q. Gentner, Vikash Gilja
Software Mentions: 1
Published: about 4 years ago
10.1371/journal.pcbi.1004977
Machine Learning Meta-analysis of Large Metagenomic Datasets: Tools and Biological Insights
Cited by: 383
Author(s): Edoardo Pasolli, Duy Tin Truong, Faizan Malik, Levi Waldron, Nicola Segata
Software Mentions: 1
Published: over 9 years ago
10.1371/journal.pcbi.1008207
A genotype imputation method for de-identified haplotype reference information by using recurrent neural network
Cited by: 9
Author(s): Kazuyuki Kojima, Shu Tadaka, Fumiki Katsuoka, Gen Tamiya, Masayuki Yamamoto, Kengo Kinoshita
Software Mentions: 1
Published: about 5 years ago
10.1371/journal.pcbi.1005938
Across-subjects classification of stimulus modality from human MEG high frequency activity
Cited by: 20
Author(s): Britta U. Westner, Sarang S. Dalal, Simon Hanslmayr, Tobias Staudigl
Software Mentions: 1
Published: over 7 years ago
10.1371/journal.pcbi.1005286
Decoding Single Molecule Time Traces with Dynamic Disorder
Cited by: 2
Author(s): Wonseok Hwang, Il Buem Lee, Seok Cheol Hong, Changbong Hyeon
Software Mentions: 1
Published: almost 9 years ago
10.1371/journal.pcbi.1008764
Extracellular matrix density regulates the formation of tumour spheroids through cell migration
Cited by: 25
Author(s): Inês G. Gonçalves, José Manuel García Aznar
Software Mentions: 1
Published: over 4 years ago
10.1128/mBio.02785-20
Predictive Rules of Efflux Inhibition and Avoidance in Pseudomonas aeruginosa
Cited by: 25
Author(s): Jitender Mehla, Giuliano Malloci, Rachael A. Mansbach, César A. López, Ruslan Tsivkovski, Keith M. Haynes, Inga V. Leus, Sally B. Grindstaff, Robert H. Cascella, Napoleon D’Cunha, Liam Herndon, Nicolas W. Hengartner, Enrico Margiotta, Alessio Atzori, Attilio Vittorio Vargiu, Pedro D. Manrique, John K. Walker, Olga Lomovskaya, Paolo Ruggerone, S. Gnanakaran, Valentin V. Rybenkov, Helen I. Zgurskaya
Software Mentions: 1
Published: over 4 years ago
10.1371/journal.pcbi.1005939
Interactions between species introduce spurious associations in microbiome studies
Cited by: 28
Author(s): Rajita Menon, Vivek Ramanan, Kirill S. Korolev
Software Mentions: 1
Published: almost 8 years ago
10.1371/journal.pcbi.1005819
Improving virtual screening of G protein-coupled receptors via ligand-directed modeling
Cited by: 8
Author(s): Thomas Coudrat, John Simms, Arthur Christopoulos, Denise Wootten, Patrick M. Sexton
Software Mentions: 1
Published: almost 8 years ago
10.1371/journal.pcbi.1007879
Towards a data-driven characterization of behavioral changes induced by the seasonal flu
Cited by: 22
Author(s): Nicolò Gozzi, Daniela Perrotta, Daniela Paolotti, Nicola Perra
Software Mentions: 1
Published: over 5 years ago
10.1371/journal.pcbi.1006801
Allosteric mechanism of the circadian protein Vivid resolved through Markov state model and machine learning analysis
Cited by: 18
Author(s): Haoming Zhou, Zheng Dong, Gennady M. Verkhivker, Brian D. Zoltowski, Peng Tao
Software Mentions: 1
Published: over 6 years ago
10.1371/journal.pcbi.1005786
Machine learning to design integral membrane channelrhodopsins for efficient eukaryotic expression and plasma membrane localization
Cited by: 90
Author(s): Claire N. Bedbrook, Kevin Yang, Austin J. Rice, Viviana Gradinaru, Frances H. Arnold
Software Mentions: 1
Published: about 8 years ago
10.1371/journal.pcbi.1005219
Computational Discovery of Putative Leads for Drug Repositioning through Drug-Target Interaction Prediction
Cited by: 27
Author(s): Edgar D. Coelho, Joel P. Arrais, José Luís Oliveira
Software Mentions: 1
Published: almost 9 years ago
10.1371/journal.pcbi.1008951
Systematic comparison and prediction of the effects of missense mutations on protein-DNA and protein-RNA interactions
Cited by: 5
Author(s): Yao Jiang, Huifang Liu, Rong Liu
Software Mentions: 1
Published: over 4 years ago
10.1371/journal.pcbi.1007544
Nonlinear mixed selectivity supports reliable neural computation
Cited by: 43
Author(s): W. Jeffrey Johnston, Stéphanie Palmer, David J. Freedman
Software Mentions: 1
Published: over 5 years ago
10.1371/journal.pcbi.1008898
Machine learning-based investigation of the cancer protein secretory pathway
Cited by: 5
Author(s): Rasool Saghaleyni, Azam Sheikh Muhammad, Pramod Bangalore, Jens Nielsen, Jonathan L. Robinson
Software Mentions: 1
Published: over 4 years ago
10.7554/eLife.26023
Topological analysis of multicellular complexity in the plant hypocotyl
Cited by: 33
Author(s): Matthew D. B. Jackson, Hao Xu, Salva Duran-Nebreda, Petra Stamm, George W. Bassel
Software Mentions: 1
Published: over 8 years ago
10.1371/journal.pbio.1002549
Short Time-Scale Sensory Coding in S1 during Discrimination of Whisker Vibrotactile Sequences
Cited by: 29
Author(s): Leah M. McGuire, Gregory Telian, Keven J. Laboy-Juárez, Toshio Miyashita, Dong Hoon Lee, Katherine A. Smith, Daniel E. Feldman
Software Mentions: 1
Published: about 9 years ago
10.3390/plants9121719
Fine-Scale Patterns of Genetic Structure in the Host Plant Chamaecrista fasciculata (Fabaceae) and Its Nodulating Rhizobia Symbionts
Cited by: 2
Author(s): Mahboubeh Hosseinalizadeh Nobarinezhad, Lisa E. Wallace
Software Mentions: 1
Published: almost 5 years ago
10.1371/journal.pcbi.1004515
At the Edge of Chaos: How Cerebellar Granular Layer Network Dynamics Can Provide the Basis for Temporal Filters
Cited by: 43
Author(s): Christian Rössert, Paul Dean, John Porrill
Software Mentions: 1
Published: about 10 years ago
10.34133/2020/4261965
Semisupervised Deep State-Space Model for Plant Growth Modeling
Cited by: 3
Author(s): Shun Shibata, Ryosuke Mizuno, Hiroshi Mineno
Software Mentions: 1
Published: almost 6 years ago
10.1098/rstb.2020.0424
The cognitive and perceptual correlates of ideological attitudes: a data-driven approach
Cited by: 51
Author(s): Leor Zmigrod, Ian W. Eisenberg, Patrick G. Bissett, Trevor W. Robbins, Russell A. Poldrack
Software Mentions: 1
Published: over 4 years ago
10.1371/journal.pcbi.1006730
Network-guided prediction of aromatase inhibitor response in breast cancer
Cited by: 5
Author(s): Matthew Ruffalo, Roby Thomas, Jian Chen, Adrian V. Lee, Steffi Oesterreich, Ziv Bar‐Joseph
Software Mentions: 1
Published: over 6 years ago
10.3390/ph14080758
Should We Embed in Chemistry? A Comparison of Unsupervised Transfer Learning with PCA, UMAP, and VAE on Molecular Fingerprints
Cited by: 7
Author(s): Mario Lovrić, Tomislav Đuričić, Han T. N. Tran, Hussain Hussain, Emanuel Lacić, Morten Arendt Rasmussen, Roman Kern
Software Mentions: 1
Published: over 4 years ago
10.3390/ph14050472
Descriptors of Cytochrome Inhibitors and Useful Machine Learning Based Methods for the Design of Safer Drugs
Cited by: 23
Author(s): Tyler Beck, Kyle R. Beck, Jordan Morningstar, Menny M Benjamin, Russell A. Norris
Software Mentions: 1
Published: over 4 years ago
10.1371/journal.pcbi.1007571
ORSO (Online Resource for Social Omics): A data-driven social network connecting scientists to genomics datasets
Cited by: 2
Author(s): Christopher A. Lavender, Andrew J. Shapiro, Frank Day, David C. Fargo
Software Mentions: 1
Published: almost 6 years ago
10.3390/ph14080790
Predicting the Skin Sensitization Potential of Small Molecules with Machine Learning Models Trained on Biologically Meaningful Descriptors
Cited by: 4
Author(s): Anke Wilm, Marina Garcia de Lomana, Conrad Stork, Neann Mathai, Steffen Hirte, Ulf Norinder, Jochen Kühnl, Johannes Kirchmair
Software Mentions: 1
Published: about 4 years ago
10.7717/peerj-cs.443
Feature-based detection of automated language models: tackling GPT-2, GPT-3 and Grover
Cited by: 14
Author(s): Leon Fröhling, Arkaitz Zubiaga
Software Mentions: 1
Published: over 4 years ago
10.7717/peerj-cs.565
Convolutional neural network-based ensemble methods to recognize Bangla handwritten character
Cited by: 2
Author(s): Mir Moynuddin Ahmed Shibly, Tahmina Akter Tisha, Tanzina Akter Tani, Shamim Ripon
Software Mentions: 1
Published: over 4 years ago
10.1371/journal.pcbi.1005734
Sequence features of viral and human Internal Ribosome Entry Sites predictive of their activity
Cited by: 22
Author(s): Alexey A. Gritsenko, Shira Weingarten-Gabbay, Shani Elias-Kirma, Ronit Nir, Dick de Ridder, Eran Segal
Software Mentions: 1
Published: about 8 years ago
10.1371/journal.pcbi.1006437
An automated approach to the quantitation of vocalizations and vocal learning in the songbird
Cited by: 17
Author(s): David G. Mets, Michael S. Brainard
Software Mentions: 1
Published: about 7 years ago
10.1186/s12859-016-1206-3
A genetic algorithm-based weighted ensemble method for predicting transposon-derived piRNAs
Cited by: 64
Author(s): Dingfang Li, Laima Luo, Wen Zhang, Feng Liu, Fei Luo
Software Mentions: 1
Published: about 9 years ago
10.1371/journal.pcbi.1008699
Tumor hepatitis B virus RNA identifies a clinically and molecularly distinct subset of hepatocellular carcinoma
Cited by: 4
Author(s): Huat Chye Lim, John D. Gordan
Software Mentions: 1
Published: over 4 years ago
10.1371/journal.pcbi.1007148
Interpreting neural decoding models using grouped model reliance
Cited by: 6
Author(s): Simon Valentin, Maximilian Harkotte, Tzvetan Popov
Software Mentions: 1
Published: almost 6 years ago
10.1128/mSystems.00098-16
Individualized Responses of Gut Microbiota to Dietary Intervention Modeled in Humanized Mice
Cited by: 44
Author(s): Samuel A. Smits, Ángela Marcobal, Steven K. Higginbottom, Justin L. Sonnenburg, Purna C. Kashyap
Software Mentions: 1
Published: about 9 years ago
10.7717/peerj-cs.551
ECOVNet: a highly effective ensemble based deep learning model for detecting COVID-19
Cited by: 33
Author(s): Nihad Karim Chowdhury, Muhammad Ashad Kabir, Md. Muhtadir Rahman, Mohammad Shahadat Hossain
Software Mentions: 1
Published: over 4 years ago
10.7717/peerj-cs.680
The classification of skateboarding tricks <i>via</i> transfer learning pipelines
Cited by: 7
Author(s): Muhammad Amirul Abdullah, M. Z. Ibrahim, Muhammad Nur Aiman Shapiee, Muhammad Aizzat Zakaria, Mohd Azraai Mohd Razman, Rabiu Muazu Musa, Noor Azuan Abu Osman, Anwar P. P. Abdul Majeed
Software Mentions: 1
Published: about 4 years ago
10.1371/journal.pcbi.1005999
Integrating linear optimization with structural modeling to increase HIV neutralization breadth
Cited by: 8
Author(s): Alexander M. Sevy, Swetasudha Panda, James E. Crowe, Jens Meiler, Yevgeniy Vorobeychik
Software Mentions: 1
Published: over 7 years ago
10.18632/aging.102823
Development and validation of a nomogram to predict coronary heart disease in patients with rheumatoid arthritis in northern China
Cited by: 7
Author(s): Tingting Wei, Bowen Yang, Haina Liu, Fangran Xin, Ling Fu
Software Mentions: 1
Published: over 5 years ago
10.7717/peerj-cs.670
Comparison of machine learning techniques to handle imbalanced COVID-19 CBC datasets
Cited by: 3
Author(s): Márcio Dorn, Bruno Iochins Grisci, Pedro Henrique Narloch, Bruno César Feltes, Eduardo Avila, Alessandro Kahmann, Clarice Sampaio Alho
Software Mentions: 1
Published: about 4 years ago
10.7717/peerj-cs.554
Toward fault tolerant modelling for SCADA based electricity distribution networks, machine learning approach
Cited by: 1
Author(s): Aladdin Masri, Muhannad Al-Jabi
Software Mentions: 1
Published: over 4 years ago
10.7717/peerj-cs.683
SSMFN: a fused spatial and sequential deep learning model for methylation site prediction
Cited by: 3
Author(s): Favorisen Rosyking Lumbanraja, Bharuno Mahesworo, Tjeng Wawan Cenggoro, Digdo Sudigyo, Bens Pardamean
Software Mentions: 1
Published: about 4 years ago
10.18632/aging.202954
Predicting intraventricular hemorrhage growth with a machine learning-based, radiomics-clinical model
Cited by: 11
Author(s): Dongqin Zhu, Qian Chen, Yingying Xiang, Chenyi Zhan, Mingyue Zhang, Chao Chen, Qichuan Zhuge, Weijian Chen, Xiaoming Yang, Yunjun Yang
Software Mentions: 1
Published: over 4 years ago
10.7717/peerj.10734
Fat mass prediction equations and reference ranges for Saudi Arabian Children aged 8–12 years using machine technique method
Cited by: 1
Author(s): Rabab B. Alkutbe, Abdulrahman Alruban, Hmidan A. Alturki, Anas A. Sattar, Hazzaa M. Al-Hazzaa, Gail Rees
Software Mentions: 1
Published: over 4 years ago
10.7717/peerj.4411
Detection of linear features including bone and skin areas in ultrasound images of joints
Cited by: 3
Author(s): Artur Bąk, Jakub Segen, Kamil Wereszczyński, Paweł Mielnik, Marcin Fojcik, Marek Kulbacki
Software Mentions: 1
Published: over 7 years ago
10.7717/peerj.11396
BACPHLIP: predicting bacteriophage lifestyle from conserved protein domains
Cited by: 87
Author(s): Adam J. Hockenberry, Claus O. Wilke
Software Mentions: 1
Published: over 4 years ago
10.1371/journal.pgen.1009313
Pleiotropy and epistasis within and between signaling pathways defines the genetic architecture of fungal virulence
Cited by: 9
Author(s): Cullen Roth, Debra Murray, Alexandria Scott, Ci Fu, Anna Floyd Averette, Sheng Sun, Joseph Heitman, Paul M. Magwene
Software Mentions: 1
Published: almost 5 years ago
10.1371/journal.pgen.1009307
Genomic analyses of glycine decarboxylase neurogenic mutations yield a large-scale prediction model for prenatal disease
Cited by: 2
Author(s): Joseph Farris, Suhail Alam, Arpitha Mysore Rajashekara, Kasturi Haldar
Software Mentions: 1
Published: almost 5 years ago
10.1371/journal.pgen.1005928
S/HIC: Robust Identification of Soft and Hard Sweeps Using Machine Learning
Cited by: 158
Author(s): Daniel R. Schrider, Andrew D. Kern
Software Mentions: 1
Published: over 9 years ago
10.7717/peerj.8207
Pelvic floor pressure distribution profile in urinary incontinence: a classification study with feature selection
Cited by: 2
Author(s): Adriano Carafini, Isabel C. N. Sacco, Marcus Fraga Vieira
Software Mentions: 1
Published: almost 6 years ago
10.7717/peerj.1750
Computational inference of H3K4me3 and H3K27ac domain length
Cited by: 8
Author(s): Julian Zubek, Michael L. Stitzel, Duygu Ucar, Dariusz Plewczynski
Software Mentions: 1
Published: over 9 years ago
10.1371/journal.pmed.1002705
Mobile detection of autism through machine learning on home video: A development and prospective validation study
Cited by: 129
Author(s): Qandeel Tariq, Jena Daniels, Jessey Schwartz, Peter Washington, Haik Kalantarian, Dennis P. Wall
Software Mentions: 1
Published: almost 7 years ago
10.1371/journal.pntd.0008924
Enhancing fine-grained intra-urban dengue forecasting by integrating spatial interactions of human movements between urban regions
Cited by: 7
Author(s): Kang Liu, Meng Zhang, Guikai Xi, Aiping Deng, Tie Song, Qinglan Li, Min Kang, Ling Yin
Software Mentions: 1
Published: almost 5 years ago
10.7554/eLife.70576
PARROT is a flexible recurrent neural network framework for analysis of large protein datasets
Cited by: 8
Author(s): Daniel Griffith, Alex S. Holehouse
Software Mentions: 1
Published: about 4 years ago
10.1371/journal.pntd.0005989
Mitochondrial dual-coding genes in Trypanosoma brucei
Cited by: 17
Author(s): Laura E. Kirby, Donna J. Koslowsky
Software Mentions: 1
Published: about 8 years ago
10.1371/journal.pntd.0009530
Dipeptidyl peptidase III as a DNA marker to investigate epidemiology and taxonomy of Old World Leishmania species
Cited by: 0
Author(s): Insaf Bel Hadj Ali, Hamed Chouaieb, Yusr Saadi Ben Aoun, Emna Harigua‐Souiai, Hejer Souguir, Alia Yaacoub, Oussaïma El Dbouni, Zoubir Harrat, Maowia M. Mukhtar, M. Ben Saïd, Nabil Haddad, Akila Fathallah-Mili, Ikram Guizani
Software Mentions: 1
Published: over 4 years ago
10.7717/peerj.6101
Remote sensing tree classification with a multilayer perceptron
Cited by: 15
Author(s): G Rex Sumsion, Michael S. Bradshaw, Kimball T Hill, Lucas D G Pinto, Stephen R. Piccolo
Software Mentions: 1
Published: over 6 years ago
10.1371/journal.pone.0205348
Automated classification of synaptic vesicles in electron tomograms of C. elegans using machine learning
Cited by: 7
Author(s): Kristin Verena Kaltdorf, M. Theiß, Sebastian M. Markert, Mei Zhen, Thomas Dandekar, Christian Stigloher, Philip Kollmannsberger
Software Mentions: 1
Published: about 7 years ago